Query 011188
Match_columns 491
No_of_seqs 331 out of 3284
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 02:59:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.2E-69 1.8E-73 541.9 46.0 389 73-464 43-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.3E-63 1.1E-67 499.0 44.5 395 73-468 2-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 5.5E-60 1.9E-64 474.4 36.2 374 80-460 31-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 7.2E-59 2.5E-63 467.0 33.6 379 79-464 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 6E-58 2.1E-62 458.1 38.3 372 83-462 18-389 (400)
6 1xti_A Probable ATP-dependent 100.0 3.2E-57 1.1E-61 451.4 38.7 369 86-460 8-380 (391)
7 3i5x_A ATP-dependent RNA helic 100.0 6.6E-57 2.3E-61 470.1 34.9 357 93-450 79-461 (563)
8 1hv8_A Putative ATP-dependent 100.0 1E-55 3.5E-60 436.6 41.3 356 85-454 5-361 (367)
9 1fuu_A Yeast initiation factor 100.0 1.2E-57 4E-62 455.1 23.8 376 81-464 16-392 (394)
10 3fht_A ATP-dependent RNA helic 100.0 2.9E-55 9.8E-60 440.4 41.2 368 82-459 21-401 (412)
11 3pey_A ATP-dependent RNA helic 100.0 4.2E-55 1.4E-59 436.6 41.2 357 84-451 3-370 (395)
12 3sqw_A ATP-dependent RNA helic 100.0 3.6E-55 1.2E-59 457.3 35.8 366 84-450 15-410 (579)
13 3fmp_B ATP-dependent RNA helic 100.0 1.5E-55 5E-60 450.8 23.3 364 85-458 91-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 5.7E-53 2E-57 412.0 37.5 336 93-452 1-336 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 2.1E-52 7.1E-57 432.8 34.2 342 88-447 23-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.7E-53 5.8E-58 436.9 20.2 369 80-459 113-492 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 5.5E-51 1.9E-55 418.1 34.8 341 86-448 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 5.2E-50 1.8E-54 402.2 28.2 326 97-451 10-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 4.1E-47 1.4E-51 406.3 34.5 338 85-440 7-410 (715)
20 2ykg_A Probable ATP-dependent 100.0 3.2E-48 1.1E-52 414.7 25.3 343 99-446 4-524 (696)
21 4a2p_A RIG-I, retinoic acid in 100.0 7E-48 2.4E-52 401.8 26.8 332 105-441 4-511 (556)
22 2zj8_A DNA helicase, putative 100.0 1.9E-47 6.5E-52 408.7 29.9 332 87-439 2-388 (720)
23 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-47 4.7E-52 408.6 26.6 332 87-440 2-390 (702)
24 1tf5_A Preprotein translocase 100.0 2E-47 6.7E-52 395.5 26.0 380 38-440 17-547 (844)
25 3l9o_A ATP-dependent RNA helic 100.0 4.6E-47 1.6E-51 416.5 29.7 330 87-438 163-597 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 1E-46 3.4E-51 393.0 28.1 334 107-446 3-515 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 4.7E-46 1.6E-50 401.7 29.6 333 104-441 244-752 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 9.4E-45 3.2E-49 371.7 34.4 323 108-440 9-477 (494)
29 2xgj_A ATP-dependent RNA helic 100.0 1.9E-44 6.6E-49 392.5 37.4 319 104-446 83-508 (1010)
30 4ddu_A Reverse gyrase; topoiso 100.0 2.6E-45 8.7E-50 402.5 29.0 320 104-451 75-503 (1104)
31 4a2w_A RIG-I, retinoic acid in 100.0 4.8E-45 1.7E-49 397.7 27.4 332 104-440 244-751 (936)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 4.8E-45 1.6E-49 400.8 20.3 320 103-452 53-468 (1054)
33 4gl2_A Interferon-induced heli 100.0 4.2E-45 1.4E-49 390.8 19.1 325 107-437 6-517 (699)
34 2fsf_A Preprotein translocase 100.0 3.8E-44 1.3E-48 369.9 24.0 321 104-440 71-585 (853)
35 4f92_B U5 small nuclear ribonu 100.0 1.9E-44 6.4E-49 408.8 23.6 346 93-447 66-482 (1724)
36 1nkt_A Preprotein translocase 100.0 7.3E-43 2.5E-47 360.6 31.1 337 103-454 107-637 (922)
37 4a4z_A Antiviral helicase SKI2 100.0 9.1E-43 3.1E-47 379.4 32.0 306 108-436 39-490 (997)
38 1gm5_A RECG; helicase, replica 100.0 2E-43 6.8E-48 373.0 24.5 333 95-453 356-711 (780)
39 4f92_B U5 small nuclear ribonu 100.0 2.1E-42 7.1E-47 392.1 33.0 343 93-447 911-1317(1724)
40 2eyq_A TRCF, transcription-rep 100.0 7.1E-42 2.4E-46 377.7 34.6 324 91-438 586-922 (1151)
41 2oca_A DAR protein, ATP-depend 100.0 1.7E-42 5.8E-47 357.0 23.0 312 107-436 112-453 (510)
42 3fe2_A Probable ATP-dependent 100.0 4.3E-41 1.5E-45 311.8 25.9 239 60-298 3-241 (242)
43 2whx_A Serine protease/ntpase/ 100.0 4.7E-43 1.6E-47 363.9 10.7 325 91-461 155-504 (618)
44 2jlq_A Serine protease subunit 100.0 1.2E-41 4E-46 343.4 15.7 311 105-461 1-337 (451)
45 2fwr_A DNA repair protein RAD2 100.0 3E-41 1E-45 344.3 16.5 294 107-438 92-454 (472)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-39 3.9E-44 346.7 25.5 336 83-440 69-445 (773)
47 1yks_A Genome polyprotein [con 100.0 3E-42 1E-46 346.1 4.5 288 119-460 4-324 (440)
48 2wv9_A Flavivirin protease NS2 100.0 7.1E-41 2.4E-45 349.5 12.8 306 108-458 215-556 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 3E-40 1E-44 339.5 14.4 280 107-442 216-518 (666)
50 2z83_A Helicase/nucleoside tri 100.0 3E-39 1E-43 326.3 13.7 276 114-438 12-313 (459)
51 3h1t_A Type I site-specific re 100.0 2.9E-38 1E-42 330.7 20.3 304 108-427 178-545 (590)
52 2v6i_A RNA helicase; membrane, 100.0 8.8E-38 3E-42 313.1 20.4 269 122-435 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 6.6E-37 2.2E-41 281.2 22.7 215 78-293 11-227 (228)
54 3dmq_A RNA polymerase-associat 100.0 4.9E-37 1.7E-41 335.1 24.9 335 107-453 152-628 (968)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 1E-36 3.6E-41 284.4 21.8 225 74-298 9-243 (253)
56 1z63_A Helicase of the SNF2/RA 100.0 2.8E-36 9.6E-41 309.8 25.5 328 107-454 36-467 (500)
57 3bor_A Human initiation factor 100.0 3E-36 1E-40 278.2 22.5 213 78-295 22-235 (237)
58 3dkp_A Probable ATP-dependent 100.0 3.9E-36 1.3E-40 279.2 22.2 230 64-297 3-243 (245)
59 3ber_A Probable ATP-dependent 100.0 6.4E-36 2.2E-40 277.7 22.5 207 83-294 40-247 (249)
60 1vec_A ATP-dependent RNA helic 100.0 2E-35 6.8E-40 267.0 24.4 202 86-292 3-205 (206)
61 2oxc_A Probable ATP-dependent 100.0 1E-35 3.5E-40 273.4 22.7 210 78-293 16-227 (230)
62 1q0u_A Bstdead; DEAD protein, 100.0 5E-36 1.7E-40 273.5 20.4 207 85-296 3-213 (219)
63 1qde_A EIF4A, translation init 100.0 1.8E-35 6.3E-40 270.8 23.5 212 79-296 7-218 (224)
64 3rc3_A ATP-dependent RNA helic 100.0 9.1E-36 3.1E-40 310.0 24.0 275 118-437 150-444 (677)
65 2pl3_A Probable ATP-dependent 100.0 4.4E-35 1.5E-39 270.5 25.7 227 62-295 6-233 (236)
66 3fmo_B ATP-dependent RNA helic 100.0 3.3E-35 1.1E-39 280.0 25.2 214 74-295 77-298 (300)
67 2gxq_A Heat resistant RNA depe 100.0 6.6E-35 2.2E-39 263.8 25.2 204 87-294 2-205 (207)
68 3jux_A Protein translocase sub 100.0 5.2E-34 1.8E-38 288.5 33.3 330 108-453 75-606 (822)
69 3mwy_W Chromo domain-containin 100.0 3.4E-34 1.2E-38 308.3 29.9 397 38-454 170-698 (800)
70 3ly5_A ATP-dependent RNA helic 100.0 1E-34 3.4E-39 271.7 22.1 205 86-291 52-259 (262)
71 1z3i_X Similar to RAD54-like; 100.0 2.1E-33 7.1E-38 294.9 34.3 323 108-438 55-528 (644)
72 1t6n_A Probable ATP-dependent 100.0 1.9E-34 6.5E-39 263.3 21.4 207 82-293 10-219 (220)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.1E-32 3.6E-37 298.5 26.2 312 107-436 270-707 (1038)
74 2ipc_A Preprotein translocase 100.0 2.2E-29 7.7E-34 259.3 32.2 318 104-440 76-700 (997)
75 2p6n_A ATP-dependent RNA helic 100.0 2.1E-30 7.3E-35 229.6 18.8 181 283-466 9-190 (191)
76 2jgn_A DBX, DDX3, ATP-dependen 100.0 4.1E-30 1.4E-34 226.8 18.4 168 300-467 15-182 (185)
77 1c4o_A DNA nucleotide excision 100.0 1.6E-28 5.3E-33 257.6 26.3 176 263-448 379-560 (664)
78 2d7d_A Uvrabc system protein B 100.0 1.6E-27 5.4E-32 249.8 26.9 175 263-447 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 1.5E-27 5.3E-32 206.3 18.8 150 301-451 6-155 (163)
80 1t5i_A C_terminal domain of A 100.0 1.3E-27 4.5E-32 208.3 16.3 160 303-463 4-164 (172)
81 1fuk_A Eukaryotic initiation f 100.0 5.7E-28 2E-32 209.5 13.6 159 304-463 3-162 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 6.9E-27 2.4E-31 204.7 16.7 152 302-454 5-163 (175)
83 3eaq_A Heat resistant RNA depe 99.9 4.5E-26 1.5E-30 205.6 17.4 147 306-453 7-153 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.6E-25 5.5E-30 211.3 16.4 147 305-452 3-149 (300)
85 3b6e_A Interferon-induced heli 99.9 2.4E-25 8.3E-30 202.2 13.1 166 105-273 30-216 (216)
86 2vl7_A XPD; helicase, unknown 99.9 1.6E-23 5.6E-28 215.3 24.5 301 104-437 4-520 (540)
87 2yjt_D ATP-dependent RNA helic 99.9 1.1E-26 3.6E-31 202.5 0.0 149 304-453 3-152 (170)
88 1rif_A DAR protein, DNA helica 99.9 2.4E-24 8.1E-29 203.9 9.2 156 107-279 112-267 (282)
89 3crv_A XPD/RAD3 related DNA he 99.9 2.2E-21 7.4E-26 200.3 30.8 309 108-438 3-531 (551)
90 3llm_A ATP-dependent RNA helic 99.9 2.8E-22 9.6E-27 184.2 16.3 182 95-290 48-232 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 8.7E-20 3E-24 189.7 24.2 317 107-437 2-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 3.5E-20 1.2E-24 170.0 13.8 139 107-277 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 5.1E-20 1.8E-24 171.7 12.5 127 312-438 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 3.2E-09 1.1E-13 110.2 10.1 146 110-273 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.7 2.1E-06 7.3E-11 89.5 23.3 70 106-182 178-247 (624)
96 4b3f_X DNA-binding protein smu 98.7 5.3E-07 1.8E-11 94.6 18.3 68 108-183 189-257 (646)
97 3upu_A ATP-dependent DNA helic 98.6 1.9E-06 6.7E-11 86.4 19.1 133 104-271 21-162 (459)
98 3e1s_A Exodeoxyribonuclease V, 98.5 9.6E-07 3.3E-11 90.7 12.7 123 107-272 188-314 (574)
99 3lfu_A DNA helicase II; SF1 he 98.3 4.9E-05 1.7E-09 79.8 22.3 71 107-183 8-78 (647)
100 2wjy_A Regulator of nonsense t 98.3 6.9E-06 2.3E-10 87.5 14.7 70 106-182 354-423 (800)
101 2xzl_A ATP-dependent helicase 98.3 5.2E-06 1.8E-10 88.5 13.4 71 106-183 358-428 (802)
102 3hgt_A HDA1 complex subunit 3; 98.2 1.1E-05 3.6E-10 75.3 12.9 122 313-439 106-238 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.0007 2.4E-08 65.4 12.6 70 108-183 163-232 (385)
104 3vkw_A Replicase large subunit 97.4 0.00053 1.8E-08 67.1 9.6 107 125-273 163-269 (446)
105 3ec2_A DNA replication protein 97.2 0.0015 5.2E-08 56.0 9.8 38 110-148 16-62 (180)
106 3cpe_A Terminase, DNA packagin 97.2 0.0063 2.1E-07 62.8 15.6 72 108-185 163-234 (592)
107 1xx6_A Thymidine kinase; NESG, 97.2 0.0012 4.2E-08 57.2 8.3 39 123-169 8-46 (191)
108 2orw_A Thymidine kinase; TMTK, 97.1 0.0015 5.2E-08 56.3 8.5 39 123-169 3-41 (184)
109 2b8t_A Thymidine kinase; deoxy 97.1 0.00055 1.9E-08 60.9 5.6 91 123-246 12-102 (223)
110 2j9r_A Thymidine kinase; TK1, 97.0 0.00088 3E-08 58.7 6.2 38 124-169 29-66 (214)
111 3te6_A Regulatory protein SIR3 97.0 0.007 2.4E-07 56.8 12.8 27 123-150 45-71 (318)
112 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0032 1.1E-07 66.7 10.2 109 107-243 10-120 (724)
113 3e2i_A Thymidine kinase; Zn-bi 96.7 0.0022 7.4E-08 56.1 6.1 39 123-169 28-66 (219)
114 2orv_A Thymidine kinase; TP4A 96.7 0.0035 1.2E-07 55.4 7.4 39 123-169 19-57 (234)
115 1uaa_A REP helicase, protein ( 96.6 0.004 1.4E-07 65.5 8.1 71 108-184 2-72 (673)
116 2kjq_A DNAA-related protein; s 96.5 0.0019 6.5E-08 53.6 4.1 18 122-139 35-52 (149)
117 1a5t_A Delta prime, HOLB; zinc 96.5 0.0061 2.1E-07 58.0 8.1 41 109-150 3-50 (334)
118 1l8q_A Chromosomal replication 96.5 0.011 3.8E-07 55.9 9.9 26 123-149 37-62 (324)
119 2zpa_A Uncharacterized protein 96.4 0.0074 2.5E-07 62.1 8.4 112 108-274 175-288 (671)
120 2v1u_A Cell division control p 96.2 0.03 1E-06 54.2 11.5 19 123-141 44-62 (387)
121 1w4r_A Thymidine kinase; type 96.2 0.0068 2.3E-07 52.2 5.9 38 123-168 20-57 (195)
122 2p65_A Hypothetical protein PF 96.2 0.033 1.1E-06 47.4 10.5 26 123-149 43-68 (187)
123 2w58_A DNAI, primosome compone 96.1 0.027 9.2E-07 49.0 9.7 25 124-149 55-79 (202)
124 3kl4_A SRP54, signal recogniti 96.1 0.015 5.2E-07 57.0 8.4 55 232-286 178-235 (433)
125 1jbk_A CLPB protein; beta barr 96.0 0.12 4E-06 44.0 13.4 24 124-148 44-67 (195)
126 1gm5_A RECG; helicase, replica 95.9 0.024 8.1E-07 60.1 9.8 88 320-407 406-498 (780)
127 2chg_A Replication factor C sm 95.9 0.039 1.3E-06 48.4 9.9 40 232-272 101-140 (226)
128 1d2n_A N-ethylmaleimide-sensit 95.9 0.054 1.9E-06 49.6 10.9 18 124-141 65-82 (272)
129 2z4s_A Chromosomal replication 95.8 0.047 1.6E-06 54.0 10.9 24 124-148 131-154 (440)
130 1g5t_A COB(I)alamin adenosyltr 95.8 0.039 1.3E-06 47.5 8.8 141 124-283 29-172 (196)
131 3u4q_A ATP-dependent helicase/ 95.8 0.019 6.5E-07 64.6 8.5 72 107-182 9-80 (1232)
132 3n70_A Transport activator; si 95.7 0.065 2.2E-06 43.8 9.6 22 120-141 21-42 (145)
133 2qby_B CDC6 homolog 3, cell di 95.7 0.041 1.4E-06 53.2 9.7 24 124-148 46-69 (384)
134 1fnn_A CDC6P, cell division co 95.6 0.025 8.5E-07 54.8 7.7 23 125-148 46-68 (389)
135 3h4m_A Proteasome-activating n 95.6 0.047 1.6E-06 50.4 9.3 55 84-140 12-68 (285)
136 2qgz_A Helicase loader, putati 95.5 0.017 5.7E-07 54.2 5.9 26 123-149 152-177 (308)
137 3bos_A Putative DNA replicatio 95.4 0.03 1E-06 50.0 7.3 19 122-140 51-69 (242)
138 3co5_A Putative two-component 95.3 0.019 6.4E-07 47.1 4.8 20 120-139 24-43 (143)
139 3eie_A Vacuolar protein sortin 95.3 0.11 3.6E-06 49.0 10.7 52 84-141 13-69 (322)
140 3syl_A Protein CBBX; photosynt 95.2 0.042 1.4E-06 51.4 7.8 25 124-149 68-92 (309)
141 3u61_B DNA polymerase accessor 95.0 0.022 7.7E-07 53.8 5.3 40 232-271 104-143 (324)
142 3dm5_A SRP54, signal recogniti 95.0 0.063 2.2E-06 52.6 8.4 131 125-286 102-236 (443)
143 2qby_A CDC6 homolog 1, cell di 94.8 0.084 2.9E-06 50.8 8.9 25 123-148 45-69 (386)
144 3uk6_A RUVB-like 2; hexameric 94.8 0.27 9.1E-06 47.1 12.4 25 123-148 70-94 (368)
145 2dr3_A UPF0273 protein PH0284; 94.7 0.098 3.3E-06 46.9 8.6 52 122-182 22-73 (247)
146 1sxj_E Activator 1 40 kDa subu 94.5 0.12 4.2E-06 49.2 9.2 42 232-274 133-174 (354)
147 3pfi_A Holliday junction ATP-d 94.5 0.1 3.4E-06 49.5 8.3 18 124-141 56-73 (338)
148 3cf0_A Transitional endoplasmi 94.4 0.31 1.1E-05 45.3 11.4 56 84-140 10-66 (301)
149 1jr3_A DNA polymerase III subu 94.4 0.18 6.1E-06 48.4 10.0 39 232-271 118-156 (373)
150 2gno_A DNA polymerase III, gam 94.3 0.12 4.2E-06 48.1 8.4 40 231-271 80-119 (305)
151 1njg_A DNA polymerase III subu 94.3 0.34 1.2E-05 42.8 11.2 24 125-149 47-70 (250)
152 3oiy_A Reverse gyrase helicase 94.1 0.15 5.2E-06 49.7 9.1 84 325-408 58-148 (414)
153 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.2 6.8E-06 44.3 9.1 21 122-142 22-42 (235)
154 1iqp_A RFCS; clamp loader, ext 94.1 0.12 4.2E-06 48.4 8.0 39 232-271 109-147 (327)
155 4b4t_J 26S protease regulatory 94.0 0.46 1.6E-05 45.8 11.6 54 84-140 143-199 (405)
156 1sxj_D Activator 1 41 kDa subu 93.8 0.25 8.4E-06 46.9 9.6 38 233-271 133-170 (353)
157 2qp9_X Vacuolar protein sortin 93.5 0.19 6.4E-06 48.1 8.2 19 123-141 84-102 (355)
158 1sxj_C Activator 1 40 kDa subu 93.4 0.31 1.1E-05 46.1 9.6 39 232-271 109-147 (340)
159 3pvs_A Replication-associated 93.4 0.13 4.6E-06 50.7 7.1 18 124-141 51-68 (447)
160 4b4t_H 26S protease regulatory 93.1 0.15 5.2E-06 50.0 6.7 55 83-140 203-260 (467)
161 2eyq_A TRCF, transcription-rep 93.0 0.31 1.1E-05 54.2 10.0 81 325-405 646-731 (1151)
162 1sxj_A Activator 1 95 kDa subu 93.0 0.26 8.9E-06 49.7 8.7 41 232-274 147-189 (516)
163 1sxj_B Activator 1 37 kDa subu 92.8 0.15 5.1E-06 47.7 6.2 38 233-271 107-144 (323)
164 3vfd_A Spastin; ATPase, microt 92.6 0.18 6.1E-06 48.9 6.6 19 123-141 148-166 (389)
165 1w5s_A Origin recognition comp 92.6 0.23 7.7E-06 48.4 7.3 17 124-140 51-69 (412)
166 2zan_A Vacuolar protein sortin 92.4 0.67 2.3E-05 45.7 10.6 54 83-140 128-184 (444)
167 3hjh_A Transcription-repair-co 92.4 0.49 1.7E-05 47.1 9.5 65 331-407 382-446 (483)
168 2q6t_A DNAB replication FORK h 92.3 0.31 1.1E-05 48.1 8.0 38 123-167 200-237 (444)
169 1hqc_A RUVB; extended AAA-ATPa 92.2 0.21 7.1E-06 46.9 6.3 18 123-140 38-55 (324)
170 2l8b_A Protein TRAI, DNA helic 92.2 0.17 5.7E-06 42.7 4.8 120 110-273 36-158 (189)
171 2r6a_A DNAB helicase, replicat 92.1 0.54 1.8E-05 46.5 9.4 39 122-167 202-240 (454)
172 3hu3_A Transitional endoplasmi 91.9 0.21 7E-06 50.0 6.1 18 123-140 238-255 (489)
173 1t6n_A Probable ATP-dependent 91.8 0.35 1.2E-05 42.4 7.0 73 332-407 83-166 (220)
174 4ddu_A Reverse gyrase; topoiso 91.6 0.45 1.5E-05 52.6 8.9 84 325-408 115-205 (1104)
175 3cmu_A Protein RECA, recombina 91.6 0.29 1E-05 56.7 7.5 39 123-169 1427-1465(2050)
176 2p6n_A ATP-dependent RNA helic 91.4 1.4 5E-05 37.6 10.4 73 159-241 54-130 (191)
177 2l82_A Designed protein OR32; 91.4 1.7 5.9E-05 32.3 9.0 51 334-384 5-55 (162)
178 1ls1_A Signal recognition part 91.4 1.8 6E-05 40.0 11.5 52 232-283 179-231 (295)
179 2px0_A Flagellar biosynthesis 91.3 1.1 3.8E-05 41.4 10.0 20 123-142 105-124 (296)
180 2ehv_A Hypothetical protein PH 91.2 0.18 6.1E-06 45.2 4.5 23 120-142 27-49 (251)
181 1nlf_A Regulatory protein REPA 91.2 0.9 3.1E-05 41.5 9.4 23 120-142 27-49 (279)
182 3ber_A Probable ATP-dependent 91.2 1.2 4.2E-05 39.8 10.1 73 331-407 111-194 (249)
183 1oyw_A RECQ helicase, ATP-depe 90.9 0.76 2.6E-05 46.4 9.3 60 330-389 64-123 (523)
184 1n0w_A DNA repair protein RAD5 90.9 0.89 3E-05 40.3 8.9 21 122-142 23-43 (243)
185 2chq_A Replication factor C sm 90.8 0.35 1.2E-05 45.0 6.4 17 125-141 40-56 (319)
186 2zr9_A Protein RECA, recombina 90.4 0.19 6.4E-06 47.9 4.0 39 122-168 60-98 (349)
187 2fna_A Conserved hypothetical 90.2 8.1 0.00028 36.0 15.6 52 217-273 124-178 (357)
188 2hjv_A ATP-dependent RNA helic 90.0 0.98 3.4E-05 37.4 7.7 74 159-242 35-112 (163)
189 2v1x_A ATP-dependent DNA helic 89.9 0.88 3E-05 46.6 8.8 60 330-389 83-144 (591)
190 1xp8_A RECA protein, recombina 89.9 0.53 1.8E-05 45.0 6.7 39 122-168 73-111 (366)
191 4a1f_A DNAB helicase, replicat 89.9 0.28 9.7E-06 46.2 4.7 39 121-167 44-82 (338)
192 3cf2_A TER ATPase, transitiona 89.6 0.41 1.4E-05 50.6 6.1 55 84-139 472-527 (806)
193 1u94_A RECA protein, recombina 89.3 0.27 9.1E-06 46.9 4.0 38 122-167 62-99 (356)
194 1vma_A Cell division protein F 89.2 3.6 0.00012 38.1 11.6 18 125-142 106-123 (306)
195 2rb4_A ATP-dependent RNA helic 88.9 1.5 5.1E-05 36.8 8.2 73 159-241 34-110 (175)
196 1qvr_A CLPB protein; coiled co 88.9 0.62 2.1E-05 50.2 7.0 24 124-148 192-215 (854)
197 3m6a_A ATP-dependent protease 88.8 0.6 2.1E-05 47.4 6.5 19 122-140 107-125 (543)
198 1r6b_X CLPA protein; AAA+, N-t 88.3 1.8 6.1E-05 45.9 10.1 19 123-141 207-225 (758)
199 2z43_A DNA repair and recombin 88.2 0.7 2.4E-05 43.4 6.1 58 123-182 107-165 (324)
200 3io5_A Recombination and repai 88.1 0.81 2.8E-05 42.5 6.2 90 125-246 30-124 (333)
201 3hr8_A Protein RECA; alpha and 88.1 0.3 1E-05 46.5 3.4 39 123-169 61-99 (356)
202 1fuk_A Eukaryotic initiation f 87.7 1.4 4.9E-05 36.4 7.2 74 159-242 30-107 (165)
203 2jgn_A DBX, DDX3, ATP-dependen 87.5 1.6 5.5E-05 37.0 7.5 72 159-240 46-121 (185)
204 4b4t_M 26S protease regulatory 87.5 0.57 2E-05 45.8 5.1 56 82-140 174-232 (434)
205 3jvv_A Twitching mobility prot 87.3 0.78 2.7E-05 43.6 5.9 18 122-139 122-139 (356)
206 3eaq_A Heat resistant RNA depe 87.3 1.5 5.2E-05 38.1 7.4 71 159-239 31-105 (212)
207 2eyu_A Twitching motility prot 87.3 0.37 1.3E-05 43.7 3.5 20 120-139 22-41 (261)
208 3u4q_B ATP-dependent helicase/ 86.4 1.4 4.8E-05 49.2 8.2 89 126-244 4-92 (1166)
209 3fe2_A Probable ATP-dependent 86.3 4.2 0.00014 36.0 10.0 73 331-407 102-184 (242)
210 3cmu_A Protein RECA, recombina 86.3 1.4 4.7E-05 51.3 8.0 48 120-176 1078-1125(2050)
211 2oxc_A Probable ATP-dependent 86.2 1.3 4.3E-05 39.1 6.4 72 331-407 92-174 (230)
212 3iuy_A Probable ATP-dependent 86.2 2.8 9.7E-05 36.6 8.7 74 330-407 93-175 (228)
213 1v5w_A DMC1, meiotic recombina 85.7 1.1 3.9E-05 42.3 6.1 65 116-182 110-180 (343)
214 3e70_C DPA, signal recognition 85.5 1.6 5.3E-05 41.0 6.8 54 233-286 211-265 (328)
215 2gxq_A Heat resistant RNA depe 85.4 2.9 0.0001 35.7 8.3 73 331-407 72-152 (207)
216 1t5i_A C_terminal domain of A 85.4 1.6 5.4E-05 36.6 6.3 75 159-243 31-109 (172)
217 2pl3_A Probable ATP-dependent 85.3 3.2 0.00011 36.5 8.6 73 330-407 96-179 (236)
218 1e9r_A Conjugal transfer prote 85.3 0.91 3.1E-05 44.6 5.4 44 122-173 52-95 (437)
219 3bor_A Human initiation factor 85.2 2.5 8.5E-05 37.4 7.8 74 331-407 98-181 (237)
220 3pxi_A Negative regulator of g 85.0 3.3 0.00011 43.9 9.9 105 114-271 504-627 (758)
221 1xti_A Probable ATP-dependent 85.0 2.5 8.6E-05 40.3 8.4 74 331-407 76-160 (391)
222 3cf2_A TER ATPase, transitiona 84.8 1.3 4.5E-05 46.8 6.5 16 124-139 239-254 (806)
223 1vec_A ATP-dependent RNA helic 84.7 2.6 9E-05 36.1 7.6 72 331-406 71-153 (206)
224 2ffh_A Protein (FFH); SRP54, s 84.7 8.4 0.00029 37.4 11.8 18 125-142 100-117 (425)
225 3cmw_A Protein RECA, recombina 84.5 1.4 4.7E-05 50.5 6.9 90 123-247 1431-1523(1706)
226 1p9r_A General secretion pathw 84.4 1.8 6E-05 42.2 6.8 27 113-139 155-183 (418)
227 2i4i_A ATP-dependent RNA helic 84.4 4.5 0.00015 38.9 10.0 72 158-239 275-350 (417)
228 2i1q_A DNA repair and recombin 83.6 1.1 3.9E-05 41.8 5.0 27 116-142 86-117 (322)
229 4b4t_L 26S protease subunit RP 83.2 1.1 3.6E-05 43.9 4.7 18 123-140 215-232 (437)
230 2j37_W Signal recognition part 82.5 4.9 0.00017 40.0 9.3 35 125-167 103-137 (504)
231 1wrb_A DJVLGB; RNA helicase, D 82.4 14 0.00047 32.7 11.7 72 332-407 101-182 (253)
232 3ly5_A ATP-dependent RNA helic 82.2 7.4 0.00025 34.9 9.8 74 330-407 125-209 (262)
233 1ypw_A Transitional endoplasmi 82.2 4 0.00014 43.5 9.1 18 122-139 237-254 (806)
234 3gk5_A Uncharacterized rhodane 82.1 1.3 4.4E-05 33.8 4.0 46 321-366 45-90 (108)
235 3i32_A Heat resistant RNA depe 81.9 2.9 9.9E-05 38.6 7.0 74 159-242 28-105 (300)
236 3b85_A Phosphate starvation-in 81.8 1.4 4.8E-05 38.3 4.5 31 109-139 8-38 (208)
237 4ag6_A VIRB4 ATPase, type IV s 80.9 1.6 5.6E-05 42.0 5.1 42 121-170 33-74 (392)
238 3g5j_A Putative ATP/GTP bindin 80.8 2.2 7.6E-05 33.6 5.1 48 319-366 76-125 (134)
239 3i5x_A ATP-dependent RNA helic 80.7 12 0.00042 37.6 12.0 78 158-242 338-419 (563)
240 1gku_B Reverse gyrase, TOP-RG; 80.3 3.7 0.00013 45.2 8.2 76 330-407 98-183 (1054)
241 1pzn_A RAD51, DNA repair and r 80.3 2.5 8.7E-05 40.0 6.1 20 123-142 131-150 (349)
242 4b4t_K 26S protease regulatory 79.9 1.7 5.9E-05 42.3 4.8 18 123-140 206-223 (428)
243 1j8m_F SRP54, signal recogniti 79.7 8.1 0.00028 35.5 9.2 18 125-142 100-117 (297)
244 2zts_A Putative uncharacterize 79.4 1.1 3.8E-05 39.8 3.2 53 122-182 29-81 (251)
245 3hws_A ATP-dependent CLP prote 79.1 3.2 0.00011 39.4 6.5 21 122-142 50-70 (363)
246 1wp9_A ATP-dependent RNA helic 78.9 7.7 0.00026 37.9 9.6 72 330-406 51-132 (494)
247 2oap_1 GSPE-2, type II secreti 78.7 1.1 3.7E-05 45.0 3.0 31 109-139 245-276 (511)
248 2bjv_A PSP operon transcriptio 78.5 1.7 5.8E-05 39.2 4.1 20 121-140 27-46 (265)
249 1kgd_A CASK, peripheral plasma 78.4 1.3 4.5E-05 37.3 3.1 18 122-139 4-21 (180)
250 3b9p_A CG5977-PA, isoform A; A 78.3 4 0.00014 37.4 6.7 18 123-140 54-71 (297)
251 3bh0_A DNAB-like replicative h 78.1 2.3 7.9E-05 39.6 5.0 51 121-180 66-116 (315)
252 3sqw_A ATP-dependent RNA helic 78.1 17 0.00058 36.9 12.0 78 159-243 288-369 (579)
253 2r44_A Uncharacterized protein 78.0 1.3 4.5E-05 41.5 3.3 22 119-140 42-63 (331)
254 1xwi_A SKD1 protein; VPS4B, AA 77.8 4 0.00014 38.0 6.6 51 84-140 7-62 (322)
255 4f4c_A Multidrug resistance pr 77.7 0.94 3.2E-05 51.2 2.5 40 232-271 1234-1273(1321)
256 4b4t_I 26S protease regulatory 77.6 2 6.9E-05 41.6 4.5 18 123-140 216-233 (437)
257 3vaa_A Shikimate kinase, SK; s 77.6 1.5 5E-05 37.7 3.2 22 121-142 23-44 (199)
258 3nwn_A Kinesin-like protein KI 77.2 1.8 6E-05 41.1 3.9 24 116-139 96-121 (359)
259 2gza_A Type IV secretion syste 76.9 1.6 5.6E-05 41.5 3.6 20 120-139 172-191 (361)
260 2r8r_A Sensor protein; KDPD, P 76.8 2.6 9E-05 37.0 4.6 18 125-142 8-25 (228)
261 3nbx_X ATPase RAVA; AAA+ ATPas 76.6 1.5 5E-05 43.9 3.3 26 114-139 32-57 (500)
262 3fht_A ATP-dependent RNA helic 76.6 5.7 0.00019 38.1 7.6 74 159-242 266-343 (412)
263 1ofh_A ATP-dependent HSL prote 76.6 5.6 0.00019 36.5 7.2 19 123-141 50-68 (310)
264 3a8t_A Adenylate isopentenyltr 76.4 1.4 4.9E-05 41.3 3.0 19 124-142 41-59 (339)
265 1yks_A Genome polyprotein [con 76.4 3.4 0.00011 40.5 5.9 68 159-238 177-245 (440)
266 1qhx_A CPT, protein (chloramph 76.2 1.3 4.4E-05 37.1 2.5 19 123-141 3-21 (178)
267 1tf7_A KAIC; homohexamer, hexa 75.8 10 0.00035 38.0 9.4 52 120-180 278-329 (525)
268 3trf_A Shikimate kinase, SK; a 75.8 1.7 5.9E-05 36.5 3.2 20 123-142 5-24 (185)
269 3flh_A Uncharacterized protein 75.7 2.2 7.6E-05 33.4 3.6 46 321-366 61-108 (124)
270 1lvg_A Guanylate kinase, GMP k 75.5 1.8 6E-05 37.2 3.2 18 122-139 3-20 (198)
271 2qmh_A HPR kinase/phosphorylas 75.5 1.4 4.8E-05 37.9 2.4 17 123-139 34-50 (205)
272 3pey_A ATP-dependent RNA helic 75.3 6.8 0.00023 37.2 7.8 76 159-244 243-322 (395)
273 1qde_A EIF4A, translation init 75.3 2.7 9.3E-05 36.6 4.5 72 331-407 82-163 (224)
274 1bg2_A Kinesin; motor protein, 75.1 2.2 7.6E-05 39.8 3.9 23 117-139 70-94 (325)
275 1tue_A Replication protein E1; 75.0 4.4 0.00015 35.0 5.4 49 96-147 29-81 (212)
276 1gmx_A GLPE protein; transfera 74.9 3.4 0.00012 31.3 4.4 46 321-366 48-94 (108)
277 3tau_A Guanylate kinase, GMP k 74.9 1.9 6.4E-05 37.3 3.2 18 122-139 7-24 (208)
278 2d7d_A Uvrabc system protein B 74.7 34 0.0012 35.3 13.3 78 159-246 445-526 (661)
279 2qor_A Guanylate kinase; phosp 74.6 1.4 4.9E-05 37.9 2.4 21 120-140 9-29 (204)
280 3iij_A Coilin-interacting nucl 74.6 1.6 5.5E-05 36.6 2.6 22 121-142 9-30 (180)
281 2cvh_A DNA repair and recombin 74.3 2.9 9.9E-05 36.1 4.4 21 122-142 19-39 (220)
282 3dc4_A Kinesin-like protein NO 74.3 2.1 7.2E-05 40.3 3.6 23 117-139 87-111 (344)
283 3t0q_A AGR253WP; kinesin, alph 74.2 2.4 8.1E-05 40.1 3.9 25 116-140 77-103 (349)
284 1v8k_A Kinesin-like protein KI 74.2 2.3 8E-05 41.0 3.9 22 118-139 148-171 (410)
285 3exa_A TRNA delta(2)-isopenten 74.1 1.7 5.7E-05 40.4 2.7 17 125-141 5-21 (322)
286 3lw7_A Adenylate kinase relate 73.9 1.5 5E-05 36.4 2.2 17 125-141 3-19 (179)
287 2pt7_A CAG-ALFA; ATPase, prote 73.8 1.6 5.5E-05 41.0 2.6 20 120-139 168-187 (330)
288 1q0u_A Bstdead; DEAD protein, 73.8 1.6 5.4E-05 38.0 2.5 73 331-407 72-158 (219)
289 3foz_A TRNA delta(2)-isopenten 73.7 1.8 6.3E-05 40.0 2.9 18 125-142 12-29 (316)
290 1u0j_A DNA replication protein 73.7 7.3 0.00025 35.1 6.8 44 95-141 73-122 (267)
291 2h58_A Kinesin-like protein KI 73.6 2.5 8.7E-05 39.5 3.9 25 115-139 71-97 (330)
292 3b6u_A Kinesin-like protein KI 73.5 2.5 8.5E-05 40.3 3.9 23 117-139 94-118 (372)
293 2vvg_A Kinesin-2; motor protei 73.5 2.6 8.8E-05 39.8 3.9 22 118-139 83-106 (350)
294 1t5c_A CENP-E protein, centrom 73.4 2.5 8.7E-05 39.9 3.9 24 116-139 69-94 (349)
295 2ze6_A Isopentenyl transferase 73.3 1.9 6.5E-05 38.7 3.0 17 125-141 3-19 (253)
296 2nr8_A Kinesin-like protein KI 73.3 2.5 8.7E-05 40.0 3.9 24 116-139 95-120 (358)
297 1hv8_A Putative ATP-dependent 73.2 7.7 0.00026 36.3 7.4 74 159-242 238-315 (367)
298 1ojl_A Transcriptional regulat 73.2 2.5 8.5E-05 39.1 3.8 20 121-140 23-42 (304)
299 2y65_A Kinesin, kinesin heavy 73.1 2.6 9E-05 40.0 3.9 23 117-139 77-101 (365)
300 2zfi_A Kinesin-like protein KI 73.1 2.6 9E-05 40.1 3.9 24 116-139 81-106 (366)
301 1zp6_A Hypothetical protein AT 73.1 1.6 5.5E-05 37.0 2.3 19 121-139 7-25 (191)
302 1f9v_A Kinesin-like protein KA 73.1 2.3 8E-05 40.1 3.6 25 116-140 76-102 (347)
303 4etp_A Kinesin-like protein KA 73.0 2.7 9.3E-05 40.6 4.1 25 116-140 132-158 (403)
304 2x8a_A Nuclear valosin-contain 73.0 0.99 3.4E-05 41.2 1.0 53 84-139 5-60 (274)
305 3tr0_A Guanylate kinase, GMP k 73.0 2.1 7.3E-05 36.6 3.1 19 122-140 6-24 (205)
306 1goj_A Kinesin, kinesin heavy 73.0 2.6 8.9E-05 39.9 3.9 22 118-139 74-97 (355)
307 1y63_A LMAJ004144AAA protein; 72.9 1.8 6.2E-05 36.6 2.6 20 122-141 9-28 (184)
308 4a14_A Kinesin, kinesin-like p 72.9 2.7 9.2E-05 39.7 3.9 23 117-139 76-100 (344)
309 2j41_A Guanylate kinase; GMP, 72.9 2.2 7.4E-05 36.6 3.1 20 121-140 4-23 (207)
310 4a2p_A RIG-I, retinoic acid in 72.7 5 0.00017 40.4 6.3 72 331-406 55-137 (556)
311 1c4o_A DNA nucleotide excision 72.7 16 0.00054 37.9 10.1 77 159-245 439-519 (664)
312 3b5x_A Lipid A export ATP-bind 72.7 9.4 0.00032 38.9 8.3 40 231-271 496-535 (582)
313 3gbj_A KIF13B protein; kinesin 72.6 2.7 9.2E-05 39.8 3.9 24 116-139 84-109 (354)
314 3lre_A Kinesin-like protein KI 72.5 2.7 9.2E-05 39.8 3.9 23 117-139 98-122 (355)
315 1x88_A Kinesin-like protein KI 72.5 2.5 8.7E-05 40.1 3.7 24 116-139 80-105 (359)
316 1ex7_A Guanylate kinase; subst 72.3 2.3 7.8E-05 36.2 3.0 16 124-139 2-17 (186)
317 1kag_A SKI, shikimate kinase I 72.2 2.6 9E-05 34.9 3.4 18 123-140 4-21 (173)
318 3bgw_A DNAB-like replicative h 71.9 3.9 0.00013 40.1 5.1 38 122-167 196-233 (444)
319 3ney_A 55 kDa erythrocyte memb 71.8 2.5 8.5E-05 36.3 3.1 19 121-139 17-35 (197)
320 2heh_A KIF2C protein; kinesin, 71.8 2.8 9.4E-05 40.2 3.7 24 117-140 127-152 (387)
321 2db3_A ATP-dependent RNA helic 71.6 11 0.00039 36.6 8.4 69 162-240 303-375 (434)
322 3d8b_A Fidgetin-like protein 1 71.6 7.4 0.00025 36.8 6.8 19 123-141 117-135 (357)
323 1lv7_A FTSH; alpha/beta domain 71.4 1.8 6.1E-05 38.8 2.3 18 123-140 45-62 (257)
324 2j0s_A ATP-dependent RNA helic 71.3 8.7 0.0003 36.8 7.4 73 159-241 276-352 (410)
325 1kht_A Adenylate kinase; phosp 71.3 2 6.7E-05 36.3 2.4 20 123-142 3-22 (192)
326 2qz4_A Paraplegin; AAA+, SPG7, 71.3 2.4 8.2E-05 37.9 3.2 19 123-141 39-57 (262)
327 2jtq_A Phage shock protein E; 71.3 9.2 0.00031 27.2 5.8 45 321-366 29-76 (85)
328 2wbe_C Bipolar kinesin KRP-130 71.2 2.7 9.3E-05 40.1 3.6 23 117-139 93-117 (373)
329 3cob_A Kinesin heavy chain-lik 71.1 2.6 8.8E-05 40.1 3.4 24 116-139 71-96 (369)
330 3fmo_B ATP-dependent RNA helic 71.1 7.7 0.00026 35.7 6.6 116 321-446 149-284 (300)
331 1ixz_A ATP-dependent metallopr 71.0 1.8 6.2E-05 38.7 2.2 53 84-139 11-65 (254)
332 1wv9_A Rhodanese homolog TT165 70.9 4.2 0.00014 29.8 3.9 39 327-366 50-88 (94)
333 3ipz_A Monothiol glutaredoxin- 70.9 18 0.00061 27.3 7.7 65 321-385 7-77 (109)
334 3eme_A Rhodanese-like domain p 70.6 2.6 9E-05 31.6 2.8 38 328-365 53-90 (103)
335 3u06_A Protein claret segregat 70.6 2.9 9.8E-05 40.5 3.6 25 115-139 129-155 (412)
336 3foj_A Uncharacterized protein 70.6 2.5 8.7E-05 31.5 2.6 39 328-366 53-91 (100)
337 3a00_A Guanylate kinase, GMP k 70.4 2.9 9.9E-05 35.3 3.3 16 124-139 2-17 (186)
338 1z6g_A Guanylate kinase; struc 70.4 3 0.0001 36.4 3.5 20 120-139 20-39 (218)
339 4akg_A Glutathione S-transfera 70.2 5.4 0.00019 48.1 6.5 49 93-142 890-942 (2695)
340 1s2m_A Putative ATP-dependent 70.2 12 0.00042 35.5 8.2 73 159-241 258-334 (400)
341 3iwh_A Rhodanese-like domain p 70.2 2.8 9.4E-05 31.7 2.8 39 327-365 52-90 (103)
342 2owm_A Nckin3-434, related to 69.9 3.3 0.00011 40.4 3.9 23 117-139 129-153 (443)
343 3kb2_A SPBC2 prophage-derived 69.9 2.1 7.1E-05 35.4 2.2 18 125-142 3-20 (173)
344 2yjt_D ATP-dependent RNA helic 72.6 0.94 3.2E-05 37.8 0.0 73 159-241 30-106 (170)
345 2ewv_A Twitching motility prot 69.6 2.2 7.4E-05 40.9 2.5 19 121-139 134-152 (372)
346 3crm_A TRNA delta(2)-isopenten 69.6 2.6 8.7E-05 39.3 2.9 18 125-142 7-24 (323)
347 2rep_A Kinesin-like protein KI 69.4 3.1 0.00011 39.7 3.5 24 116-139 107-132 (376)
348 3bfn_A Kinesin-like protein KI 69.3 2.7 9.3E-05 40.2 3.1 21 119-139 93-115 (388)
349 1cr0_A DNA primase/helicase; R 69.2 4.7 0.00016 36.9 4.8 23 120-142 32-54 (296)
350 1sky_E F1-ATPase, F1-ATP synth 69.1 7 0.00024 38.4 6.0 24 119-142 147-170 (473)
351 2ius_A DNA translocase FTSK; n 69.1 7 0.00024 38.9 6.2 18 123-140 167-184 (512)
352 1ly1_A Polynucleotide kinase; 69.1 2.2 7.6E-05 35.5 2.3 16 125-140 4-19 (181)
353 4gp7_A Metallophosphoesterase; 68.9 2.1 7E-05 35.8 2.0 18 122-139 8-25 (171)
354 1fuu_A Yeast initiation factor 68.8 12 0.00041 35.4 7.8 72 330-406 88-169 (394)
355 3nwj_A ATSK2; P loop, shikimat 68.5 3.6 0.00012 36.8 3.6 22 121-142 46-67 (250)
356 4dzz_A Plasmid partitioning pr 68.5 6.9 0.00024 33.3 5.4 32 210-244 55-86 (206)
357 4a74_A DNA repair and recombin 68.1 4.8 0.00016 35.0 4.4 19 122-140 24-42 (231)
358 1rj9_A FTSY, signal recognitio 67.8 5.1 0.00018 37.0 4.6 17 123-139 102-118 (304)
359 1znw_A Guanylate kinase, GMP k 67.8 3.5 0.00012 35.5 3.3 21 119-139 16-36 (207)
360 3t15_A Ribulose bisphosphate c 67.7 2.9 9.9E-05 38.4 2.9 18 124-141 37-54 (293)
361 1knq_A Gluconate kinase; ALFA/ 67.7 2.3 7.7E-05 35.4 2.0 19 123-141 8-26 (175)
362 3d3q_A TRNA delta(2)-isopenten 67.6 3 0.0001 39.1 3.0 18 125-142 9-26 (340)
363 3dkp_A Probable ATP-dependent 67.5 3.4 0.00012 36.6 3.3 74 331-407 98-183 (245)
364 1f2t_A RAD50 ABC-ATPase; DNA d 67.5 3.8 0.00013 33.2 3.3 15 125-139 25-39 (149)
365 4eun_A Thermoresistant glucoki 67.5 3.5 0.00012 35.3 3.2 19 122-140 28-46 (200)
366 3cm0_A Adenylate kinase; ATP-b 67.4 2.5 8.4E-05 35.6 2.2 20 123-142 4-23 (186)
367 1iy2_A ATP-dependent metallopr 67.3 2.4 8.3E-05 38.5 2.3 16 124-139 74-89 (278)
368 4f4c_A Multidrug resistance pr 67.3 7.1 0.00024 44.1 6.5 41 231-271 570-610 (1321)
369 3zyw_A Glutaredoxin-3; metal b 67.2 20 0.00069 27.1 7.3 66 321-386 5-76 (111)
370 1w36_B RECB, exodeoxyribonucle 67.0 10 0.00035 42.3 7.6 57 125-181 18-78 (1180)
371 2wv9_A Flavivirin protease NS2 67.0 7.6 0.00026 40.3 6.2 68 159-238 410-478 (673)
372 3kta_A Chromosome segregation 66.3 3.8 0.00013 34.2 3.2 15 125-139 28-42 (182)
373 1um8_A ATP-dependent CLP prote 66.1 3.7 0.00013 39.1 3.5 19 123-141 72-90 (376)
374 1s96_A Guanylate kinase, GMP k 65.8 3.9 0.00013 35.7 3.2 20 120-139 13-32 (219)
375 1xjc_A MOBB protein homolog; s 65.8 6.5 0.00022 32.7 4.4 25 125-150 6-30 (169)
376 2c95_A Adenylate kinase 1; tra 65.6 3.2 0.00011 35.1 2.6 22 121-142 7-28 (196)
377 1zuh_A Shikimate kinase; alpha 65.6 3.8 0.00013 33.7 3.0 19 124-142 8-26 (168)
378 2v6i_A RNA helicase; membrane, 65.5 8.2 0.00028 37.6 5.8 67 159-237 171-238 (431)
379 4anj_A Unconventional myosin-V 65.4 7.5 0.00026 42.3 5.9 65 84-149 96-169 (1052)
380 1ak2_A Adenylate kinase isoenz 65.3 4.5 0.00015 35.6 3.6 20 123-142 16-35 (233)
381 2yvu_A Probable adenylyl-sulfa 65.3 5.9 0.0002 33.2 4.2 20 123-142 13-32 (186)
382 2jlq_A Serine protease subunit 65.2 8.9 0.0003 37.6 6.1 68 159-238 188-256 (451)
383 1zu4_A FTSY; GTPase, signal re 65.2 5.9 0.0002 36.9 4.5 19 124-142 106-124 (320)
384 3pxg_A Negative regulator of g 65.1 7.5 0.00026 38.4 5.5 26 123-149 201-226 (468)
385 2v54_A DTMP kinase, thymidylat 65.0 2.9 0.0001 35.7 2.2 19 122-140 3-21 (204)
386 3eph_A TRNA isopentenyltransfe 65.0 3.4 0.00012 39.7 2.8 18 125-142 4-21 (409)
387 3vkg_A Dynein heavy chain, cyt 64.9 15 0.00052 44.9 8.8 49 93-142 873-925 (3245)
388 2iut_A DNA translocase FTSK; n 64.8 9.6 0.00033 38.4 6.2 25 124-149 215-239 (574)
389 2r2a_A Uncharacterized protein 64.7 4.4 0.00015 34.8 3.3 18 125-142 7-24 (199)
390 4fcw_A Chaperone protein CLPB; 64.6 4.3 0.00015 37.3 3.5 19 124-142 48-66 (311)
391 2c9o_A RUVB-like 1; hexameric 64.6 3.7 0.00013 40.5 3.1 19 123-141 63-81 (456)
392 3t61_A Gluconokinase; PSI-biol 64.6 3 0.0001 35.7 2.3 18 124-141 19-36 (202)
393 3uie_A Adenylyl-sulfate kinase 64.4 3.7 0.00013 35.1 2.8 21 122-142 24-44 (200)
394 2oca_A DAR protein, ATP-depend 64.2 80 0.0027 31.0 13.1 74 161-243 349-426 (510)
395 2rhm_A Putative kinase; P-loop 63.8 3.2 0.00011 35.0 2.2 19 124-142 6-24 (193)
396 2fsf_A Preprotein translocase 63.7 16 0.00056 38.5 7.8 80 320-405 104-200 (853)
397 2v9p_A Replication protein E1; 63.7 4.5 0.00015 37.4 3.3 19 121-139 124-142 (305)
398 3gx8_A Monothiol glutaredoxin- 63.6 43 0.0015 25.7 8.7 55 322-376 6-69 (121)
399 3o8b_A HCV NS3 protease/helica 63.5 10 0.00034 39.2 6.1 67 158-238 395-461 (666)
400 1nij_A Hypothetical protein YJ 63.5 4.8 0.00017 37.4 3.6 15 125-139 6-20 (318)
401 1via_A Shikimate kinase; struc 63.3 4.7 0.00016 33.5 3.2 19 124-142 5-23 (175)
402 1tev_A UMP-CMP kinase; ploop, 63.1 3 0.0001 35.2 2.0 19 124-142 4-22 (196)
403 2bdt_A BH3686; alpha-beta prot 63.1 4.4 0.00015 34.1 3.0 16 125-140 4-19 (189)
404 3p32_A Probable GTPase RV1496/ 63.1 58 0.002 30.4 11.2 16 125-140 81-96 (355)
405 2yan_A Glutaredoxin-3; oxidore 63.0 27 0.00092 25.9 7.2 62 325-386 10-77 (105)
406 2xau_A PRE-mRNA-splicing facto 63.0 16 0.00056 38.5 7.9 75 159-239 303-393 (773)
407 4a2q_A RIG-I, retinoic acid in 62.9 13 0.00046 39.4 7.3 72 331-406 296-378 (797)
408 3tbk_A RIG-I helicase domain; 62.9 8.3 0.00028 38.6 5.5 72 331-406 52-134 (555)
409 1m7g_A Adenylylsulfate kinase; 62.9 4.3 0.00015 35.0 2.9 33 109-142 12-44 (211)
410 3c8u_A Fructokinase; YP_612366 62.6 4.1 0.00014 35.1 2.7 17 123-139 22-38 (208)
411 3hix_A ALR3790 protein; rhodan 62.3 6.3 0.00021 29.7 3.4 41 326-366 47-88 (106)
412 1in4_A RUVB, holliday junction 62.2 4.6 0.00016 37.8 3.2 17 124-140 52-68 (334)
413 1tq1_A AT5G66040, senescence-a 62.1 5.1 0.00017 31.5 3.0 39 328-366 79-118 (129)
414 1nks_A Adenylate kinase; therm 61.7 5.4 0.00018 33.5 3.3 18 125-142 3-20 (194)
415 2r62_A Cell division protease 61.6 2.4 8.3E-05 38.2 1.1 19 123-141 44-62 (268)
416 3fb4_A Adenylate kinase; psych 61.6 3.7 0.00013 35.5 2.3 18 125-142 2-19 (216)
417 3lnc_A Guanylate kinase, GMP k 61.4 3.6 0.00012 36.1 2.2 20 120-139 24-43 (231)
418 1gvn_B Zeta; postsegregational 61.2 3.3 0.00011 38.0 1.9 16 125-140 35-50 (287)
419 1e6c_A Shikimate kinase; phosp 61.0 4.3 0.00015 33.5 2.5 19 124-142 3-21 (173)
420 1htw_A HI0065; nucleotide-bind 60.9 5 0.00017 33.0 2.8 19 121-139 31-49 (158)
421 4db1_A Myosin-7; S1DC, cardiac 60.8 9.1 0.00031 40.3 5.3 64 85-149 125-196 (783)
422 1zak_A Adenylate kinase; ATP:A 60.8 6.4 0.00022 34.2 3.7 19 124-142 6-24 (222)
423 2plr_A DTMP kinase, probable t 60.7 3.5 0.00012 35.4 1.9 20 123-142 4-23 (213)
424 3b9q_A Chloroplast SRP recepto 60.6 8.2 0.00028 35.6 4.5 18 123-140 100-117 (302)
425 2bwj_A Adenylate kinase 5; pho 60.6 4.5 0.00015 34.3 2.6 21 122-142 11-31 (199)
426 1zd8_A GTP:AMP phosphotransfer 60.5 4.2 0.00014 35.6 2.4 18 123-140 7-24 (227)
427 1tf5_A Preprotein translocase 60.4 24 0.00081 37.3 8.3 70 330-405 123-209 (844)
428 2pez_A Bifunctional 3'-phospho 60.4 3.8 0.00013 34.2 2.1 19 123-141 5-23 (179)
429 3dl0_A Adenylate kinase; phosp 60.4 4 0.00014 35.3 2.3 18 125-142 2-19 (216)
430 1ye8_A Protein THEP1, hypothet 60.3 5.5 0.00019 33.4 3.0 15 125-139 2-16 (178)
431 3f9v_A Minichromosome maintena 60.1 4.7 0.00016 41.2 3.0 15 125-139 329-343 (595)
432 2whx_A Serine protease/ntpase/ 60.0 17 0.00058 37.3 7.2 68 159-238 355-423 (618)
433 2iyv_A Shikimate kinase, SK; t 59.8 6.3 0.00022 32.9 3.4 19 124-142 3-21 (184)
434 1qxn_A SUD, sulfide dehydrogen 59.7 8.8 0.0003 30.5 4.1 40 327-366 78-118 (137)
435 3eiq_A Eukaryotic initiation f 59.7 38 0.0013 32.1 9.5 74 330-406 107-190 (414)
436 1ry6_A Internal kinesin; kines 59.2 6.4 0.00022 37.2 3.6 18 122-139 82-101 (360)
437 1w7j_A Myosin VA; motor protei 59.1 10 0.00034 40.1 5.3 65 84-149 109-181 (795)
438 2i3b_A HCR-ntpase, human cance 58.9 6.6 0.00022 33.3 3.3 41 231-274 103-145 (189)
439 1lkx_A Myosin IE heavy chain; 58.8 17 0.00058 37.7 6.9 78 72-150 35-120 (697)
440 2v26_A Myosin VI; calmodulin-b 58.8 14 0.00047 39.0 6.3 65 84-149 92-165 (784)
441 2qt1_A Nicotinamide riboside k 58.7 2.8 9.7E-05 36.0 1.0 18 122-139 20-37 (207)
442 2cdn_A Adenylate kinase; phosp 58.6 4.5 0.00015 34.5 2.3 19 124-142 21-39 (201)
443 2jaq_A Deoxyguanosine kinase; 58.5 6.7 0.00023 33.3 3.4 17 125-141 2-18 (205)
444 3tif_A Uncharacterized ABC tra 58.5 4.3 0.00015 35.9 2.2 18 121-138 29-46 (235)
445 1qf9_A UMP/CMP kinase, protein 58.5 5.8 0.0002 33.3 2.9 18 125-142 8-25 (194)
446 2k0z_A Uncharacterized protein 58.5 16 0.00055 27.5 5.2 39 328-366 53-91 (110)
447 1cke_A CK, MSSA, protein (cyti 58.4 5.7 0.0002 34.5 3.0 19 124-142 6-24 (227)
448 1jjv_A Dephospho-COA kinase; P 58.4 4.6 0.00016 34.6 2.3 16 125-140 4-19 (206)
449 1w9i_A Myosin II heavy chain; 58.2 11 0.00037 39.6 5.3 64 85-149 126-197 (770)
450 3sr0_A Adenylate kinase; phosp 58.2 7.2 0.00025 33.6 3.5 18 125-142 2-19 (206)
451 1g8x_A Myosin II heavy chain f 58.1 13 0.00045 40.4 6.2 64 84-148 125-196 (1010)
452 1aky_A Adenylate kinase; ATP:A 58.1 6.5 0.00022 34.1 3.3 20 123-142 4-23 (220)
453 3tqc_A Pantothenate kinase; bi 58.0 18 0.00061 33.6 6.3 15 126-140 95-109 (321)
454 3qks_A DNA double-strand break 57.9 6.8 0.00023 33.6 3.3 15 125-139 25-39 (203)
455 2pt5_A Shikimate kinase, SK; a 57.9 4.8 0.00016 33.0 2.2 18 125-142 2-19 (168)
456 3l9o_A ATP-dependent RNA helic 57.8 11 0.00037 41.7 5.6 71 324-405 220-296 (1108)
457 1ukz_A Uridylate kinase; trans 57.7 4.8 0.00016 34.3 2.3 16 125-140 17-32 (203)
458 3auy_A DNA double-strand break 57.6 6.2 0.00021 37.6 3.2 15 125-139 27-41 (371)
459 2wem_A Glutaredoxin-related pr 57.5 26 0.00091 26.9 6.3 53 324-376 12-71 (118)
460 3k1j_A LON protease, ATP-depen 57.4 8.9 0.00031 39.2 4.6 22 119-140 56-77 (604)
461 3qf7_A RAD50; ABC-ATPase, ATPa 57.2 6.5 0.00022 37.4 3.3 16 125-140 25-40 (365)
462 2if2_A Dephospho-COA kinase; a 57.0 4.9 0.00017 34.3 2.2 16 125-140 3-18 (204)
463 2v3c_C SRP54, signal recogniti 56.9 6.3 0.00021 38.5 3.2 19 124-142 100-118 (432)
464 2f1r_A Molybdopterin-guanine d 56.9 4.6 0.00016 33.7 1.9 16 125-140 4-19 (171)
465 1g8p_A Magnesium-chelatase 38 56.9 2.9 9.8E-05 39.3 0.7 18 123-140 45-62 (350)
466 2wwf_A Thymidilate kinase, put 56.8 5.4 0.00019 34.2 2.5 21 122-142 9-29 (212)
467 3asz_A Uridine kinase; cytidin 56.8 5.9 0.0002 34.0 2.7 18 123-140 6-23 (211)
468 2fsx_A RV0390, COG0607: rhodan 56.7 14 0.00047 29.7 4.8 38 329-366 78-116 (148)
469 1q57_A DNA primase/helicase; d 56.5 8.5 0.00029 38.3 4.2 50 122-179 241-290 (503)
470 1nn5_A Similar to deoxythymidy 56.3 5.4 0.00019 34.2 2.4 21 122-142 8-28 (215)
471 3umf_A Adenylate kinase; rossm 56.3 6.6 0.00023 34.2 2.9 19 124-142 30-48 (217)
472 2z0m_A 337AA long hypothetical 56.1 29 0.001 31.7 7.7 71 331-406 56-136 (337)
473 1wik_A Thioredoxin-like protei 56.0 60 0.002 24.1 8.9 48 330-377 13-66 (109)
474 2cbz_A Multidrug resistance-as 55.8 5.1 0.00018 35.4 2.2 19 121-139 29-47 (237)
475 2pbr_A DTMP kinase, thymidylat 55.7 5.4 0.00018 33.5 2.3 17 126-142 3-19 (195)
476 3be4_A Adenylate kinase; malar 55.7 8.5 0.00029 33.3 3.6 19 124-142 6-24 (217)
477 1c9k_A COBU, adenosylcobinamid 55.7 10 0.00035 31.8 3.9 44 126-181 2-45 (180)
478 2og2_A Putative signal recogni 55.6 11 0.00037 35.7 4.5 16 125-140 159-174 (359)
479 4gl2_A Interferon-induced heli 55.6 3.1 0.00011 43.5 0.8 70 332-405 57-142 (699)
480 1kk8_A Myosin heavy chain, str 55.3 11 0.00037 40.1 4.8 64 85-149 123-194 (837)
481 2ce7_A Cell division protein F 55.1 5.2 0.00018 39.6 2.3 17 124-140 50-66 (476)
482 2z0h_A DTMP kinase, thymidylat 55.0 5.7 0.00019 33.5 2.3 17 126-142 3-19 (197)
483 1sgw_A Putative ABC transporte 54.8 5.7 0.0002 34.5 2.3 19 121-139 33-51 (214)
484 3ice_A Transcription terminati 54.7 30 0.001 33.1 7.2 33 109-141 157-192 (422)
485 3tlx_A Adenylate kinase 2; str 54.4 8 0.00027 34.2 3.2 20 123-142 29-48 (243)
486 1g41_A Heat shock protein HSLU 54.2 7.5 0.00026 38.0 3.2 18 123-140 50-67 (444)
487 2wci_A Glutaredoxin-4; redox-a 54.2 32 0.0011 27.2 6.4 62 324-385 27-94 (135)
488 2xxa_A Signal recognition part 54.1 11 0.00038 36.7 4.5 35 125-166 102-136 (433)
489 2vli_A Antibiotic resistance p 54.1 4.4 0.00015 33.8 1.4 20 123-142 5-24 (183)
490 3nhv_A BH2092 protein; alpha-b 54.0 6.8 0.00023 31.5 2.5 38 329-366 70-109 (144)
491 3cmw_A Protein RECA, recombina 53.9 15 0.00052 42.2 6.0 39 122-168 33-71 (1706)
492 1e4v_A Adenylate kinase; trans 53.9 7.5 0.00026 33.5 2.9 18 125-142 2-19 (214)
493 3a4m_A L-seryl-tRNA(SEC) kinas 53.8 5.9 0.0002 35.5 2.3 19 124-142 5-23 (260)
494 3b6e_A Interferon-induced heli 53.5 17 0.00057 30.9 5.2 73 331-407 82-170 (216)
495 4e22_A Cytidylate kinase; P-lo 53.4 8.3 0.00029 34.3 3.2 20 122-141 26-45 (252)
496 1vee_A Proline-rich protein fa 53.2 18 0.0006 28.5 4.8 38 329-366 72-110 (134)
497 1uf9_A TT1252 protein; P-loop, 53.1 7.8 0.00027 32.8 2.9 19 126-144 11-29 (203)
498 2ycu_A Non muscle myosin 2C, a 53.0 13 0.00046 40.3 5.2 63 85-148 100-170 (995)
499 2ff7_A Alpha-hemolysin translo 53.0 5.9 0.0002 35.3 2.1 21 120-140 32-52 (247)
500 2dfs_A Myosin-5A; myosin-V, in 52.9 14 0.00047 40.6 5.3 63 85-148 110-180 (1080)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.2e-69 Score=541.95 Aligned_cols=389 Identities=41% Similarity=0.708 Sum_probs=358.1
Q ss_pred CceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 011188 73 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 152 (491)
Q Consensus 73 ~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~ 152 (491)
.+.+.+.+.|.|+.+|+++++++.+++++.+.||.+|+|+|.++|+.+++++++++++|||||||++|++|++.++...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCcccc
Q 011188 153 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR 232 (491)
Q Consensus 153 ~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~ 232 (491)
......++++|||+||++|+.|+++++++++...++++..++||.....+...+..+++|+|+||++|.+++.+....+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 43344578899999999999999999999998888999999999988888888888999999999999999998888899
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhc--CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 310 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
++++||+||||++.+++|...+..++..+ ++..|++++|||+++.+..++..++.++..+.+.... .....+.+.+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 99999999999999999999999999875 5788999999999999999999999998888776654 44556778888
Q ss_pred ccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc
Q 011188 311 IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 390 (491)
Q Consensus 311 ~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 390 (491)
.+....|...+.+++..... ++||||++++.++.+++.|+..++++..+||++++.+|..+++.|++|+.+|||||++
T Consensus 282 ~~~~~~k~~~l~~~l~~~~~--~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp ECCGGGHHHHHHHHHHHCCT--TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred EeCcHHHHHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh
Confidence 88888899999999887543 4999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCc-ccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 011188 391 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSPELAAM 464 (491)
Q Consensus 391 ~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~l~~~ 464 (491)
+++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++ .+...+..+.+.++++++++|++|.+|
T Consensus 360 ~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999999994 578899999999999999999998764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-63 Score=499.04 Aligned_cols=395 Identities=45% Similarity=0.720 Sum_probs=354.6
Q ss_pred CceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 011188 73 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 152 (491)
Q Consensus 73 ~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~ 152 (491)
.+.+.+...|.++.+|+++++++.+.+++...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CC-------------CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHH
Q 011188 153 FL-------------APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 219 (491)
Q Consensus 153 ~~-------------~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~ 219 (491)
.. ....++++||++||++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11234789999999999999999999998888899999999988888888888889999999999
Q ss_pred HHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc--CC--CCceEEeccCCcHHHHHHHHHHccCCcEEEec
Q 011188 220 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 295 (491)
Q Consensus 220 l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
|.+++......+.++++||+||||++.+++|...+..++... ++ ..|++++|||+++.+..+...++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999998887788999999999999999999999999998753 22 67899999999999999999999888777665
Q ss_pred CCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHH
Q 011188 296 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 375 (491)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~ 375 (491)
... .....+.+.+..+....+...+.++++....+.++||||++++.++.+++.|+..++.+..+||++++++|..+++
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 242 RVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 543 3445566777777888899999999998767789999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCC
Q 011188 376 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 455 (491)
Q Consensus 376 ~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 455 (491)
.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.+.++
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhccCC
Q 011188 456 KVSPELAAMGRGA 468 (491)
Q Consensus 456 ~~~~~l~~~~~~~ 468 (491)
++|.+|.+++...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999998765
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.5e-60 Score=474.43 Aligned_cols=374 Identities=33% Similarity=0.572 Sum_probs=333.9
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCC
Q 011188 80 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 159 (491)
Q Consensus 80 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 159 (491)
..+.+..+|+++++++.+.+.+...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 334556789999999999999999999999999999999999999999999999999999999999876532 236
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEE
Q 011188 160 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 239 (491)
Q Consensus 160 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIi 239 (491)
+++||++|+++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 78999999999999999999999988899999999999888887888888999999999999999888788889999999
Q ss_pred ccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC-hhhHH
Q 011188 240 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKY 318 (491)
Q Consensus 240 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 318 (491)
||||++.+++|...+..++..+++..|++++|||+++.+.++...++.+|..+.+.... .....+.+.+..+. ...+.
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHH
T ss_pred ccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999999999999999999998888888888888877655443 23334455544444 44588
Q ss_pred HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC
Q 011188 319 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 398 (491)
Q Consensus 319 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 398 (491)
..+.+++.... ..++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 265 ~~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 265 DTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 88888887764 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHH
Q 011188 399 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE 460 (491)
Q Consensus 399 ~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 460 (491)
++++||++++|+++..|+||+||+||.|+.|.+++|+++.+...++.+.+.+...-.++|..
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999999999998887776666643
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.2e-59 Score=466.95 Aligned_cols=379 Identities=32% Similarity=0.565 Sum_probs=320.5
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCC
Q 011188 79 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 158 (491)
Q Consensus 79 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 158 (491)
...+....+|+++++++.+.+.+.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3455667889999999999999999999999999999999999999999999999999999999999887642 23
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
+.++||++|+++|+.|+.+.+.+++...++.+...+++.........+. .+++|+|+||++|.+.+......+.++++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6789999999999999999999999888889999999887766666655 668999999999999998877788899999
Q ss_pred EEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeee-eccChhh
Q 011188 238 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSESQ 316 (491)
Q Consensus 238 IiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (491)
|+||||++.+++|...+..++..+++..|++++|||++..+..+...++.++..+......... ..+.+.+ .......
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREEW 266 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSSTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHHh
Confidence 9999999999999999999999999999999999999999999999999888887766554333 3334433 3344455
Q ss_pred HHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCC
Q 011188 317 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 396 (491)
Q Consensus 317 k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 396 (491)
+...+.+++.... .+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 267 ~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETLT-ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSSC-CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 8888888887753 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 011188 397 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 464 (491)
Q Consensus 397 i~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 464 (491)
+|++++||++++|++..+|+||+||+||.|+.|.|++|+++.+...++.+.+.++....++|..+.++
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999888898887664
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6e-58 Score=458.12 Aligned_cols=372 Identities=30% Similarity=0.511 Sum_probs=330.0
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEE
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 162 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 162 (491)
.+..+|+++++++.+.+.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+.++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 345689999999999999999999999999999999999999999999999999999999999887542 236689
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 242 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEa 242 (491)
||++|+++|+.|+.+.+.++....++.+..++|+.........+..+++|+|+||++|.+.+......+.++++||+|||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988889999999988777666667778999999999999988887777889999999999
Q ss_pred cccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHH
Q 011188 243 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 322 (491)
Q Consensus 243 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 322 (491)
|++.+.+|...+..++..+++..+++++|||++..+......++..+..+..... .....+.+.+.......+...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHH
Confidence 9999888888999999999889999999999999999988888888876644332 33445666666777778888888
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCE
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 402 (491)
.++... ..+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 251 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 251 TLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 888765 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHH
Q 011188 403 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 462 (491)
Q Consensus 403 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 462 (491)
||++++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.+...-+++|..+.
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred EEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccc
Confidence 999999999999999999999999999999999999999988888877666666665543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-57 Score=451.43 Aligned_cols=369 Identities=28% Similarity=0.514 Sum_probs=325.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
.+|+++++++.+.+.+...||.+|+|+|.++++.++.++++++.+|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886542 235689999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcC-CcEEEeChHHHHHHHhccCccccCccEEEEcccc
Q 011188 166 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah 243 (491)
+|+++|+.|+.+++.++.... ++++..++|+.........+..+ ++|+|+||++|..++......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987665 78899999988766665555543 7999999999999988877788999999999999
Q ss_pred ccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHH
Q 011188 244 RMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 322 (491)
Q Consensus 244 ~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 322 (491)
++.++ ++...+..++...++..|++++|||+++....+...++..+..+............+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67788888888888899999999999999999999999999888776654444455666777777888888888
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCE
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 402 (491)
+++... ...++||||+++++++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888875 5578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc-cHHHHHHHHHHHHHhCCCCCHH
Q 011188 403 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPE 460 (491)
Q Consensus 403 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 460 (491)
||++++|+++..|+||+||+||.|+.|.+++++++. +..++..+.+.+...-+++|..
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999976 4566777777766656666654
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.6e-57 Score=470.09 Aligned_cols=357 Identities=32% Similarity=0.495 Sum_probs=297.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
+++.+++.+...||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998775321 223568999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEECCccChhhHHHh-hcCCcEEEeChHHHHHHHhcc-CccccCccEEEEccccc
Q 011188 171 LAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 244 (491)
Q Consensus 171 L~~q~~~~~~~~~~----~~~~~v~~~~~g~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lIiDEah~ 244 (491)
|+.|+++.+.++.. ...+.+..++++.....+...+ ..+++|+|+||++|.+++.+. ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998642 2246678888888776666655 447899999999999888764 33577899999999999
Q ss_pred cccCCcHHHHHHHHhhcC-------CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCC---cccccceeeeeeccCh
Q 011188 245 MLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKANHAIRQHVDIVSE 314 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 314 (491)
+.+++|...+..++..++ +..|++++|||+++.+..++..++..+..+.+.... ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999988876652 367899999999999999999888887776654322 1222334444433332
Q ss_pred -hhHH----HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q 011188 315 -SQKY----NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 386 (491)
Q Consensus 315 -~~k~----~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLv 386 (491)
..+. ..+...+.....+.++||||+++..++.+++.|+.. ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2222 223333343345679999999999999999999876 89999999999999999999999999999999
Q ss_pred EeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHH
Q 011188 387 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 450 (491)
Q Consensus 387 aT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 450 (491)
||+++++|||+|++++||++++|.++.+|+||+||+||.|+.|.|++|+++.+...++.+.+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988888876654
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-55 Score=436.60 Aligned_cols=356 Identities=37% Similarity=0.598 Sum_probs=316.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
..+|+++++++.+.+.+.+.|+.+|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .+.++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 467999999999999999999999999999999999988 6999999999999999999998876542 367899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc
Q 011188 164 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah 243 (491)
|++|+++|+.|+.+.+.++....++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888888999998887665555544 68999999999999988877778899999999999
Q ss_pred ccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHH
Q 011188 244 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 323 (491)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 323 (491)
++.+++|...+..++..+++..+++++|||++.........++.++..+.... ...+.+.+.......+...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99999999999999999999999999999999998888888887665544322 2245555666677788888888
Q ss_pred HHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEE
Q 011188 324 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 403 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V 403 (491)
++. ..+.++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 776 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhC
Q 011188 404 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 454 (491)
Q Consensus 404 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 454 (491)
|++++|+|+.+|+||+||+||.|++|.+++++++.+...++.+.+.+...-
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999988888877765443
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-57 Score=455.09 Aligned_cols=376 Identities=33% Similarity=0.564 Sum_probs=188.6
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCC
Q 011188 81 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 160 (491)
Q Consensus 81 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 160 (491)
..++..+|+++++++.+.+.+...|+.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45567789999999999999999999999999999999999999999999999999999999999887542 2467
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 161 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 161 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
++||++|+++|+.|+.+.+.++....++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999998888899999999887655554444 57999999999999988877778899999999
Q ss_pred cccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccCh-hhHHH
Q 011188 241 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYN 319 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~ 319 (491)
|||++.+.++...+..++..+++..+++++|||+++....+...++..|..+........ ...+.+.+..... ..+..
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHHH
Confidence 999999999999999999999999999999999999998999999988888776654422 2233333333332 33666
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 399 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 399 (491)
.+.+++... ...++||||+++++++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 666666654 3468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 011188 400 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 464 (491)
Q Consensus 400 ~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 464 (491)
+++||++++|+++.+|+||+||+||.|++|.+++++++.+...++.+.+.+...-..+|..+.++
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 99999999999999999999999999999999999999999999999998888877777766543
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.9e-55 Score=440.42 Aligned_cols=368 Identities=28% Similarity=0.453 Sum_probs=313.4
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCC
Q 011188 82 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 159 (491)
Q Consensus 82 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 159 (491)
..+..+|+++++++.+++.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 455788999999999999999999999999999999999987 8999999999999999999999887652 235
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccccCccEE
Q 011188 160 PIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYL 237 (491)
Q Consensus 160 ~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~l 237 (491)
+++||++|+++|+.|+.+.+.++.... ++.+....++....... ...++|+|+||++|.+++.+ ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999987653 57777777766543322 34579999999999998865 45667899999
Q ss_pred EEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee-ccChh
Q 011188 238 VLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IVSES 315 (491)
Q Consensus 238 IiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 315 (491)
|+||||++.+ .++...+..+...+++..|++++|||+++.+..+...++.++..+...... .....+.+.+. .....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRD 251 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChH
Confidence 9999999987 678888889999999999999999999999999999999888877665544 23334444443 34456
Q ss_pred hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccC
Q 011188 316 QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 395 (491)
Q Consensus 316 ~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 395 (491)
.+...+..++.... ..++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 252 ~~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 252 EKFQALCNLYGAIT-IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHHS-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHhhcC-CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 77788888777654 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC------ChhHHHHhhhhcccCCCcceEEEEeCccc-HHHHHHHHHHHHHhCCCCCH
Q 011188 396 DVKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVSP 459 (491)
Q Consensus 396 di~~~~~VI~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 459 (491)
|+|++++||++++|+ +..+|+||+||+||.|+.|.+++++++.+ ...+..+.+.+...-..++.
T Consensus 331 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 331 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 999999999999994 67899999999999999999999998764 67777777777655555543
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.2e-55 Score=436.60 Aligned_cols=357 Identities=31% Similarity=0.527 Sum_probs=307.0
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCE
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 161 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 161 (491)
...+|+++++++.+++.+.+.++.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999998 8999999999999999999999887642 24678
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcc
Q 011188 162 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 241 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDE 241 (491)
+||++|+++|+.|+.+.+.+++...++.+...+++...... ..+++|+|+||++|.+.+......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999998888888888776543322 33679999999999999988777889999999999
Q ss_pred cccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeecc-ChhhHHH
Q 011188 242 ADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQKYN 319 (491)
Q Consensus 242 ah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~ 319 (491)
||++.+ .++...+..+...+++..|++++|||+++.+..+...++..+..+........ ...+.+.+... ....+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHH
Confidence 999887 67888899999999999999999999999999999999888877765554422 23344444333 4556666
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 399 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 399 (491)
.+..++... ...++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 666666554 4568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC------ChhHHHHhhhhcccCCCcceEEEEeCccc-HHHHHHHHHHHH
Q 011188 400 VKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILE 451 (491)
Q Consensus 400 ~~~VI~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 451 (491)
+++||++++|+ ++.+|+||+||+||.|++|.+++++.+.+ ......+.+.+.
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999 99999999999999999999999998754 444555555443
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.6e-55 Score=457.25 Aligned_cols=366 Identities=31% Similarity=0.480 Sum_probs=302.9
Q ss_pred CcCCcccCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC
Q 011188 84 PVKSFRDVG----FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 157 (491)
Q Consensus 84 ~~~~f~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 157 (491)
+..+|+++. +++++++++...||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+...... ..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-ST
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-cc
Confidence 344555543 99999999999999999999999999999 678999999999999999999999998774321 23
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcC----CCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhcc-Cccc
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH-NTNL 231 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~----~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~-~~~l 231 (491)
.++++|||+||++|+.|+.+++.++.. ...+.+..++++.....+...+. .+++|+|+||++|.+++... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 367899999999999999999998752 23467888888887776666664 37899999999999988764 3457
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcC-------CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCC---ccc
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKA 301 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 301 (491)
..+++|||||||++.+++|...+..++..++ +..|+++||||+++.+..++..++..+..+.+.... ...
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999999999999988877653 367999999999999999999888887776654322 122
Q ss_pred ccceeeeeeccCh-hhHH----HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHH
Q 011188 302 NHAIRQHVDIVSE-SQKY----NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWV 373 (491)
Q Consensus 302 ~~~~~~~~~~~~~-~~k~----~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~i~~~~~~~~r~~~ 373 (491)
...+.+.+..... ..+. ..+...+.....+.++||||+++..++.+++.|+.. ++.+..+||++++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 2334444433332 2222 233333343345679999999999999999999876 8999999999999999999
Q ss_pred HHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHH
Q 011188 374 LSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 450 (491)
Q Consensus 374 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 450 (491)
++.|++|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.|++|+++.+..+++.+.+..
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888776653
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.5e-55 Score=450.78 Aligned_cols=364 Identities=28% Similarity=0.467 Sum_probs=174.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 162 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 162 (491)
..+|+++++++.+++.+..++|..|+|+|.++++.++.+ +++++++|||||||++|++|++..+... ..++++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~~ 165 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQC 165 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCCE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCcE
Confidence 678999999999999999999999999999999999987 8999999999999999999999877542 235689
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccccCccEEEEc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLD 240 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiD 240 (491)
|||+|+++|+.|+.+.+.++.... ++.+....++....... ...++|+|+||++|.+++.+ ....+.++++||||
T Consensus 166 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred EEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 999999999999999999887653 56677777665443221 33578999999999998865 45567899999999
Q ss_pred ccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC-hhhHH
Q 011188 241 EADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKY 318 (491)
Q Consensus 241 Eah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 318 (491)
|||++.+ .+|...+..+...+++..|++++|||++..+..++..++.++..+.+.... .....+.+.+..+. ...+.
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------------
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCceEEEEEeCCHHHHH
Confidence 9999987 578888889999999999999999999999999999999888887776554 23334444443333 34566
Q ss_pred HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC
Q 011188 319 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 398 (491)
Q Consensus 319 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 398 (491)
..+..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 322 ~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 322 QALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 6666666654 345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCC------ChhHHHHhhhhcccCCCcceEEEEeCccc-HHHHHHHHHHHHHhCCCCC
Q 011188 399 DVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 458 (491)
Q Consensus 399 ~~~~VI~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 458 (491)
++++||+||+|. +..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.+...-..++
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 999999999995 56899999999999999999999998764 6677777777655544444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-53 Score=412.01 Aligned_cols=336 Identities=33% Similarity=0.551 Sum_probs=286.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
+++.+.+.+.++|+.+|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998764 56799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHH
Q 011188 173 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 252 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~ 252 (491)
.|+.+.+.+++...++.+..++++.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999887666555544 48999999999999988877778899999999999999999999
Q ss_pred HHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCC
Q 011188 253 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 332 (491)
Q Consensus 253 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 332 (491)
.+..++...+...+++++|||+++........++.++..+... .....+.+.+.......+ .....+.. ..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHh-CCCC
Confidence 9999999998899999999999999988888888777665322 122233333333333222 22233433 3456
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCCh
Q 011188 333 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 412 (491)
Q Consensus 333 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~ 412 (491)
++||||+++++++.+++.|+ .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999999886 57899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 413 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 413 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
.+|+||+||+||.|++|.+++|+. .+....+.+.+.+..
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999 788888887776643
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.1e-52 Score=432.80 Aligned_cols=342 Identities=21% Similarity=0.307 Sum_probs=278.9
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 88 FRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 88 f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
+.++++++.+.+.|+. .||..|+|+|.++|+.+++++++++.+|||+|||++|++|++.. ...+|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVis 91 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVIC 91 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEe
Confidence 3457889999999998 69999999999999999999999999999999999999999753 45899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hh---hcCCcEEEeChHHHH------HHHhccCccccCc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DL---QKGVEIVIATPGRLI------DMLESHNTNLRRV 234 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~---~~~~~Iiv~T~~~l~------~~l~~~~~~l~~~ 234 (491)
|+++|+.|+.+.+.++ ++.+..+.++........ .+ ....+|+|+||++|. +.+.. ...+.++
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 9999999999999997 477778888776544322 22 346899999999874 22222 3346789
Q ss_pred cEEEEccccccccCC--cHHHHHH--HHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee
Q 011188 235 TYLVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 310 (491)
Q Consensus 235 ~~lIiDEah~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
++|||||||++.+++ |.+.+.. .+....+..+++++|||+++.+......++..+....+.... ...++...+.
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~ 244 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVR 244 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEE
Confidence 999999999999987 7766654 344445678999999999998887777777655433333322 1122222222
Q ss_pred cc--ChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe
Q 011188 311 IV--SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 388 (491)
Q Consensus 311 ~~--~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT 388 (491)
.. ....+...+.+++.....+.++||||++++.++.+++.|+..++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred eCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 22 2245566677777655567799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 389 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 389 ~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
+++++|||+|++++||++++|.|++.|+||+||+||.|+.|.|++|+++.|......++
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988776655544
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-53 Score=436.94 Aligned_cols=369 Identities=29% Similarity=0.484 Sum_probs=260.3
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC
Q 011188 80 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 157 (491)
Q Consensus 80 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 157 (491)
..|.++..|...++++.+.+.+.+.++..|+++|.++++.++++ +++++++|||+|||++|+++++..+... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~ 187 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----V 187 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----C
Confidence 34555666777789999999999999999999999999999998 8999999999999999999999887652 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
.++++||++|+++|+.|+.+.+.+++...++.+...+++..... ...+++|+|+||++|.+.+......+.++++|
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lI 263 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVF 263 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEE
Confidence 36689999999999999999999998777777666555543221 23368999999999999988877788999999
Q ss_pred EEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeee-eccChh
Q 011188 238 VLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSES 315 (491)
Q Consensus 238 IiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 315 (491)
|+||||++.+ .++...+..+...+++..|++++|||+++.+..+...+..++..+.+........ .+.+.+ ......
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~ 342 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVE-GIKQLYMDCQSEE 342 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CH
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcc-cceEEEEECCchH
Confidence 9999999987 6788999999999999999999999999999999999988887776555443222 233333 333455
Q ss_pred hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccC
Q 011188 316 QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 395 (491)
Q Consensus 316 ~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 395 (491)
.+...+..++... ..+++||||+++++++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 6677777766654 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCC------CChhHHHHhhhhcccCCCcceEEEEeCc-ccHHHHHHHHHHHHHhCCCCCH
Q 011188 396 DVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSP 459 (491)
Q Consensus 396 di~~~~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 459 (491)
|+|++++||+++.| .++..|+||+||+||.|+.|.+++|+.+ .+...+..+.+.+......+|.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 7899999999999999999999999985 4566677777776655555554
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.5e-51 Score=418.15 Aligned_cols=341 Identities=21% Similarity=0.338 Sum_probs=275.3
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 86 KSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
.+|+++++++.+.+.+++ .|+..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 579999999999999998 89999999999999999999999999999999999999998853 356999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH---HH-hhcCCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RD-LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~---~~-~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
|+|+++|+.|+.+.+.+++ +.+..+.++....... .. .....+|+|+||++|............++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999999864 6677777766544332 22 23458999999999853222222334688999999
Q ss_pred cccccccCC--cHHHHHHH---HhhcCCCCceEEeccCCcHHHHHH-HHHHccCCcEEEecCCCcccccceeeeeeccCh
Q 011188 241 EADRMLDMG--FEPQIKKI---LSQIRPDRQTLYWSATWPKEVEHL-ARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 314 (491)
Q Consensus 241 Eah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
|||++.+++ |.+.+..+ ...+ +..+++++|||+++.+... ...+......+...... ..++.. .....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~~--~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNIRY--MLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTEEE--EEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCceEE--EEEeC
Confidence 999999887 66665543 3334 5689999999998876554 44343333333333322 122222 22333
Q ss_pred hhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecccccc
Q 011188 315 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 394 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 394 (491)
..+...+.+++... .+.++||||++++.++.+++.|+..++.+..+||++++++|..+++.|++|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 55677788877765 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHH
Q 011188 395 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 448 (491)
Q Consensus 395 idi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 448 (491)
||+|++++||++++|.|++.|+||+||+||.|+.|.|++|+++.|....+.++.
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888776665544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.2e-50 Score=402.25 Aligned_cols=326 Identities=24% Similarity=0.291 Sum_probs=262.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 011188 97 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 176 (491)
Q Consensus 97 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 176 (491)
+.+.+++....+|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ++++||++||++|+.|+.
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHHHH
Confidence 344455433348999999999999999999999999999999999988876532 678999999999999999
Q ss_pred HHHHHhcCCCCceEEEEECCccC---hhhHHHhhcC-CcEEEeChHHHHHHHhccCccccCccEEEEcccccccc-----
Q 011188 177 QESTKFGASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD----- 247 (491)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~g~~~---~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~----- 247 (491)
+.+.+++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++..
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999987 78999999999877 4455666665 89999999999887764 5567899999999997654
Q ss_pred ------CCcHHH-HHHHHhhcC-----------CCCceEEeccC-CcHHHH-HHHHHHccCCcEEEecCCCcccccceee
Q 011188 248 ------MGFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIRQ 307 (491)
Q Consensus 248 ------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
.+|... +..++..++ +..|++++||| .|..+. .+...++.- .+.... .....+.+
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~i~~ 233 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF----TVGRLV-SVARNITH 233 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC----CSSCCC-CCCCSEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc----CcCccc-cccccchh
Confidence 667777 778887776 78999999999 565443 333333321 111111 22334455
Q ss_pred eeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceE-EEcCCCCHHHHHHHHHHHhCCCCcEEE
Q 011188 308 HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMT 386 (491)
Q Consensus 308 ~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~i~~~~~~~~r~~~~~~f~~g~~~vLv 386 (491)
.+... .+...+.++++.. +.++||||+++..++.+++.|+..++.+. .+||. +|. ++.|++|+.+|||
T Consensus 234 ~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 234 VRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp EEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 54444 4566677777773 47899999999999999999999999998 89984 444 9999999999999
Q ss_pred E----eccccccCCCCC-CCEEEEcCCC--CChhHHHHhhhhcccCC----CcceEEEEeCcccHHHHHHHHHHHH
Q 011188 387 A----TDVAARGLDVKD-VKYVINYDFP--GSLEDYVHRIGRTGRAG----AKGTAYTFFTAANARFAKELITILE 451 (491)
Q Consensus 387 a----T~~~~~Gidi~~-~~~VI~~~~p--~s~~~~~Qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 451 (491)
| |+++++|+|+|+ +++||++++| .++.+|+||+||+||.| +.|.+++|+ .+...+..+.+.+.
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9 999999999999 9999999999 99999999999999988 479999998 66777777777776
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.1e-47 Score=406.28 Aligned_cols=338 Identities=21% Similarity=0.248 Sum_probs=266.3
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
..+|+++++++.+.+.+...||.+|+|+|.++++. +.+++++++++|||||||++|.++++..+..+ +.+++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78899999999999999999999999887742 67899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc
Q 011188 164 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah 243 (491)
|++|+++|+.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++......+.++++||+||+|
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999997654 3478888888877654432 2368999999999999888766668899999999999
Q ss_pred ccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccce--------eeeeeccC--
Q 011188 244 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAI--------RQHVDIVS-- 313 (491)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-- 313 (491)
.+.+..+...++.++..++ ..++|++|||+++ ...+...+. .+. +............+ ...+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 9988888988988888776 8899999999976 455655543 211 11110000000000 00011111
Q ss_pred ------hhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCC--------------------------------
Q 011188 314 ------ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-------------------------------- 355 (491)
Q Consensus 314 ------~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-------------------------------- 355 (491)
...+...+.+.+ .+++++||||+++++++.++..|....
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 123333333333 356799999999999999999997642
Q ss_pred ----CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cC-------CCCChhHHHHhhh
Q 011188 356 ----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-------FPGSLEDYVHRIG 420 (491)
Q Consensus 356 ----~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~-------~p~s~~~~~Qr~G 420 (491)
..+..+||+++.++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 24889999999999999999999999999999999999999999999999 88 7999999999999
Q ss_pred hcccCCC--cceEEEEeCcccH
Q 011188 421 RTGRAGA--KGTAYTFFTAANA 440 (491)
Q Consensus 421 R~gR~g~--~g~~~~~~~~~~~ 440 (491)
||||.|. .|.|++++++.+.
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGG
T ss_pred hcCCCCCCCCceEEEEeCCchH
Confidence 9999984 6999999987653
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.2e-48 Score=414.68 Aligned_cols=343 Identities=22% Similarity=0.307 Sum_probs=229.9
Q ss_pred HHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 011188 99 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 178 (491)
Q Consensus 99 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 178 (491)
..+..+|+.+|+|+|.+++++++.++++|+++|||+|||++|++|++.++...+ ...+.++|||+||++|+.||.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 455678899999999999999999999999999999999999999998887643 12246799999999999999999
Q ss_pred HHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc-cccCccEEEEccccccccCC-cHHHHHH
Q 011188 179 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKK 256 (491)
Q Consensus 179 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lIiDEah~~~~~~-~~~~~~~ 256 (491)
+.++....++++..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988888999999999877677777777899999999999999988766 68899999999999988654 2222222
Q ss_pred HHhh-----cCCCCceEEeccCCc--------HHHHHHHHH---------------------HccCCcEEEecCCCcccc
Q 011188 257 ILSQ-----IRPDRQTLYWSATWP--------KEVEHLARQ---------------------YLYNPYKVIIGSPDLKAN 302 (491)
Q Consensus 257 i~~~-----~~~~~~~i~~SAT~~--------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 302 (491)
.+.. ..+.+++++||||+. +....+... +...|.............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 112222211 111121111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 011188 303 -------------------------------------------------------------------------------- 302 (491)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (491)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------cceeeeee----------------ccChhhHHHHHHHHHHhhc---cCCe
Q 011188 303 ------------------------------HAIRQHVD----------------IVSESQKYNKLVKLLEDIM---DGSR 333 (491)
Q Consensus 303 ------------------------------~~~~~~~~----------------~~~~~~k~~~l~~~l~~~~---~~~~ 333 (491)
..+.+.+. ......|...|.+++.... ++.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000 0013457777888887752 4568
Q ss_pred EEEEeCCcccHHHHHHHHHhCC----CceEEE--------cCCCCHHHHHHHHHHHhC-CCCcEEEEeccccccCCCCCC
Q 011188 334 ILIFMDTKKGCDQITRQLRMDG----WPALSI--------HGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 334 ~lVf~~~~~~~~~l~~~L~~~~----~~~~~i--------~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~ 400 (491)
+||||+++..++.+++.|+..+ +++..+ |+++++++|..++++|++ |+.+|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999887 788888 559999999999999998 999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHH
Q 011188 401 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 401 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 446 (491)
++||+||+|+|+..|+||+|| ||. +.|.++++++..+......+
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999 998 78999999998766444433
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7e-48 Score=401.80 Aligned_cols=332 Identities=21% Similarity=0.248 Sum_probs=207.9
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 105 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 105 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
+..+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+|+++|+.||.+.+.++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999998887643 22367799999999999999999999988
Q ss_pred CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc-cccCccEEEEccccccccCCcHHHH-HHHHhh--
Q 011188 185 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ-- 260 (491)
Q Consensus 185 ~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lIiDEah~~~~~~~~~~~-~~i~~~-- 260 (491)
..++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+++....+ ...+..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999877777777777899999999999999988766 7889999999999999887643332 222222
Q ss_pred --cCCCCceEEeccCCcH-----------HHHHHHHHH------------------ccCCcEEEecCCCccccc------
Q 011188 261 --IRPDRQTLYWSATWPK-----------EVEHLARQY------------------LYNPYKVIIGSPDLKANH------ 303 (491)
Q Consensus 261 --~~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~------ 303 (491)
..+..+++++|||++. .+..+...+ ...|..............
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 1356899999999842 122222221 112221111111000000
Q ss_pred ----c---------------------e-----eeee--------------------------------------------
Q 011188 304 ----A---------------------I-----RQHV-------------------------------------------- 309 (491)
Q Consensus 304 ----~---------------------~-----~~~~-------------------------------------------- 309 (491)
. . .+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0000
Q ss_pred ---------------------------------------------eccChhhHHHHHHHHHHhh---ccCCeEEEEeCCc
Q 011188 310 ---------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTK 341 (491)
Q Consensus 310 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~~ 341 (491)
.......|...|.+++.+. ..+.++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0000244666677777654 4567999999999
Q ss_pred ccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhC-CCCcEEEEeccccccCCCCCCCEEEEcCC
Q 011188 342 KGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDF 408 (491)
Q Consensus 342 ~~~~~l~~~L~~~------------~~~~~~i~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~~ 408 (491)
.+++.+++.|+.. |.....+||++++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 4455667888999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 409 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 409 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
|+|+..|+||+|| ||. +.|.+++|+++.+..
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999 999 899999999987543
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.9e-47 Score=408.68 Aligned_cols=332 Identities=19% Similarity=0.218 Sum_probs=270.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
+|+++++++.+.+.+...||.+|+|+|.++++. +.+++++++++|||||||++|.+|++..+... +.+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887742 6789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc
Q 011188 166 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 245 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~ 245 (491)
+|+++|+.|+++.++++.. .++++..++|+....... ...++|+|+||++|..++......+.++++||+||+|.+
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976653 478899999876554332 246899999999999888876666889999999999999
Q ss_pred ccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeee------eeccC-----h
Q 011188 246 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH------VDIVS-----E 314 (491)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~ 314 (491)
.++.+...+..++..+++..|+|++|||+++ ..++...+.... +..... ...+... +.... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~r----p~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSDWR----PVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECCCC----SSEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCCCC----CCcceEEEEeCCeeeccccchhhh
Confidence 9888899999999888778999999999976 455555443211 111100 1111111 11111 1
Q ss_pred hhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC---------------------------------CCceEEE
Q 011188 315 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSI 361 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~i 361 (491)
..+...+.+.+ .+++++||||++++.++.++..|.+. ...+..+
T Consensus 224 ~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 22333344433 34679999999999999999998653 1248999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cC----CCCChhHHHHhhhhcccCC--CcceE
Q 011188 362 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD----FPGSLEDYVHRIGRTGRAG--AKGTA 431 (491)
Q Consensus 362 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~----~p~s~~~~~Qr~GR~gR~g--~~g~~ 431 (491)
||++++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.| ..|.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 380 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEG 380 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999998 66 5899999999999999998 46899
Q ss_pred EEEeCccc
Q 011188 432 YTFFTAAN 439 (491)
Q Consensus 432 ~~~~~~~~ 439 (491)
++++++.+
T Consensus 381 ~~l~~~~~ 388 (720)
T 2zj8_A 381 IIVSTSDD 388 (720)
T ss_dssp EEECSSSC
T ss_pred EEEecCcc
Confidence 99999877
No 23
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-47 Score=408.61 Aligned_cols=332 Identities=18% Similarity=0.271 Sum_probs=264.5
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 87 SFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 87 ~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
+|++++ +++.+.+.+...||.+|+|+|.++++.+++++++++++|||||||++|.+|++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 578888 9999999999999999999999999999999999999999999999999999988764 567999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
++|+++|+.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++.+....+.++++||+||+|.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999997654 3478899999887654321 23689999999999998888666688999999999999
Q ss_pred cccCCcHHHHHHHHhhc---CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeee------eccChh
Q 011188 245 MLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV------DIVSES 315 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 315 (491)
+.++++...+..++..+ .++.|++++|||+++ ..++...+. .+. +..... ...+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r----~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-ADY-YVSDWR----PVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CEE-EECCCC----SSCEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CCc-ccCCCC----CccceEEEeeCCeeeccCcc
Confidence 99888888888776655 578999999999986 455655443 221 111111 11111111 011110
Q ss_pred -------hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC------------------------------CCce
Q 011188 316 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------GWPA 358 (491)
Q Consensus 316 -------~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------~~~~ 358 (491)
.+...+.+.+ .+++++||||+++++++.++..|... +..+
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 1334444443 35679999999999999999988642 1357
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cC---CCCChhHHHHhhhhcccCCC--cc
Q 011188 359 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD---FPGSLEDYVHRIGRTGRAGA--KG 429 (491)
Q Consensus 359 ~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~---~p~s~~~~~Qr~GR~gR~g~--~g 429 (491)
..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|. .|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G 379 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 379 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 88999999999999999999999999999999999999999999998 66 68899999999999999984 68
Q ss_pred eEEEEeCcccH
Q 011188 430 TAYTFFTAANA 440 (491)
Q Consensus 430 ~~~~~~~~~~~ 440 (491)
.|++++++.+.
T Consensus 380 ~~~~l~~~~~~ 390 (702)
T 2p6r_A 380 EAIIIVGKRDR 390 (702)
T ss_dssp EEEEECCGGGH
T ss_pred eEEEEecCccH
Confidence 99999998763
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2e-47 Score=395.48 Aligned_cols=380 Identities=18% Similarity=0.234 Sum_probs=285.6
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHhhcCceEe-cCCCCCCcCCcccCCCCHHHH---H-HHHHCCCCCCcHH
Q 011188 38 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVE-GRDVPKPVKSFRDVGFPDYVM---Q-EISKAGFFEPTPI 112 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~f~~~~l~~~~~---~-~l~~~~~~~~~~~ 112 (491)
+.+..+.+.-+.+....+.+..++++++..........+. +. +++++ +++.+. + .....|+ .|+|+
T Consensus 17 r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-------~ld~~-l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 17 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-------TTDDL-LVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-------ChHHH-HHHHHHHHHHHHHHHcCC-CCcHH
Confidence 3455555666677788889999999999665544222211 11 12221 222211 0 1114799 99999
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEE
Q 011188 113 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 192 (491)
Q Consensus 113 Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~ 192 (491)
|..+++.+++|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++++..++..+++++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999998 999999999999999999865443 5679999999999999999999999989999999
Q ss_pred EECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc------CccccCccEEEEccccccc-cCC---------------
Q 011188 193 IYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG--------------- 249 (491)
Q Consensus 193 ~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lIiDEah~~~-~~~--------------- 249 (491)
++||.+.. .+....+++|+|+||++| .+++... ...++.+.++|+||||+|+ +.+
T Consensus 158 i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 99998653 334445789999999999 6666543 3557889999999999988 653
Q ss_pred cHHHHHHHHhhcC---------CCCceE-----------------EeccCCcHH---HHHH--HHHHcc-CCcEEE----
Q 011188 250 FEPQIKKILSQIR---------PDRQTL-----------------YWSATWPKE---VEHL--ARQYLY-NPYKVI---- 293 (491)
Q Consensus 250 ~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~---~~~~--~~~~~~-~~~~~~---- 293 (491)
|...+..++..++ +.+|++ ++|||.+.. +... +..++. +...++
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 6788899999986 367887 899998643 3322 222222 111111
Q ss_pred ---ecCCC----------------------cc------cccce-------------------------------------
Q 011188 294 ---IGSPD----------------------LK------ANHAI------------------------------------- 305 (491)
Q Consensus 294 ---~~~~~----------------------~~------~~~~~------------------------------------- 305 (491)
++... .. ....+
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 00000 00 00000
Q ss_pred ----------eeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHH
Q 011188 306 ----------RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 374 (491)
Q Consensus 306 ----------~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~ 374 (491)
.+.+.......|...+.+.+... ..+.++||||+|++.++.|+..|+..|+++..+||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 01123345678888898888764 4567899999999999999999999999999999999888887776
Q ss_pred HHHhCCCCcEEEEeccccccCCCC--------CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 375 SEFKAGKSPIMTATDVAARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 375 ~~f~~g~~~vLvaT~~~~~Gidi~--------~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
+.|+.| .|+|||++++||+||+ ++.+||+++.|.|...|+||+||+||.|.+|.++.|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 666655 6999999999999999 788999999999999999999999999999999999997763
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-47 Score=416.48 Aligned_cols=330 Identities=16% Similarity=0.201 Sum_probs=261.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
.|..+++++.+...+....+++|+|+|.++++.++.++++|+++|||||||++|++|++..+.. +.++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 5666667666666666677789999999999999999999999999999999999999988755 77899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
|+++|+.|+++.+.++.. .+..++|+... ..+++|+|+||++|.+++......+.++++|||||||++.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999998764 46667777654 3458999999999999998877778899999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCceEEeccCCcHH--HHHHHHHHccCCcEEEecCCCcccccceeeeeec---------cChh
Q 011188 247 DMGFEPQIKKILSQIRPDRQTLYWSATWPKE--VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI---------VSES 315 (491)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 315 (491)
+++|...+..++..+++..|+++||||+++. +..+.......+..+....... ..+.+.+.. +...
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS---SCEEEEEEETTSSCCEEEEETT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEeecCCcceeeeeccc
Confidence 9999999999999999999999999999764 3355555555555554433221 111111100 0000
Q ss_pred ----------------------------------------hH---HHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHH
Q 011188 316 ----------------------------------------QK---YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQ 350 (491)
Q Consensus 316 ----------------------------------------~k---~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~ 350 (491)
.+ ...+..++..+. ...++||||+++..|+.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 00 222333333322 345899999999999999999
Q ss_pred HHhCCCc---------------------------------------eEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccc
Q 011188 351 LRMDGWP---------------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 391 (491)
Q Consensus 351 L~~~~~~---------------------------------------~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 391 (491)
|...++. +..+||+|++.+|..+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653322 7899999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCC--------CChhHHHHhhhhcccCC--CcceEEEEeCcc
Q 011188 392 ARGLDVKDVKYVINYDFP--------GSLEDYVHRIGRTGRAG--AKGTAYTFFTAA 438 (491)
Q Consensus 392 ~~Gidi~~~~~VI~~~~p--------~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 438 (491)
++|||+|++++||+++.| .|+.+|+||+||+||.| ..|.|++++.+.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999977653 47778999999999999 578888888775
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1e-46 Score=392.96 Aligned_cols=334 Identities=21% Similarity=0.302 Sum_probs=235.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+|+++|+.||.+.+.++....
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4899999999999999999999999999999999999998887743 1236779999999999999999999998888
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc-cccCccEEEEccccccccCC-cHHHHHHHHhhc---
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI--- 261 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~--- 261 (491)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999977777777777899999999999999988766 78899999999999998875 223333333332
Q ss_pred --CCCCceEEeccCCcHH-----------HHHHHHHHc------------------cCCcEEEecCCCccccccee----
Q 011188 262 --RPDRQTLYWSATWPKE-----------VEHLARQYL------------------YNPYKVIIGSPDLKANHAIR---- 306 (491)
Q Consensus 262 --~~~~~~i~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 306 (491)
.+..+++++|||++.. +..+...+. ..|.......... ......
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc-ccChHHHHHH
Confidence 2567999999998431 112222111 1111111000000 000000
Q ss_pred -------e---------------------------ee-------------------------------------------
Q 011188 307 -------Q---------------------------HV------------------------------------------- 309 (491)
Q Consensus 307 -------~---------------------------~~------------------------------------------- 309 (491)
. .+
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 00
Q ss_pred ----------------------------------------------eccChhhHHHHHHHHHHhh---ccCCeEEEEeCC
Q 011188 310 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 340 (491)
Q Consensus 310 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~ 340 (491)
.......|...+.+++... .+..++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0001134666777777664 245799999999
Q ss_pred cccHHHHHHHHHhCC------------CceEEEcCCCCHHHHHHHHHHHhC-CCCcEEEEeccccccCCCCCCCEEEEcC
Q 011188 341 KKGCDQITRQLRMDG------------WPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 407 (491)
Q Consensus 341 ~~~~~~l~~~L~~~~------------~~~~~i~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 407 (491)
+.+++.+++.|+..+ .....+||++++.+|..++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998763 344455679999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHH
Q 011188 408 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 408 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 446 (491)
+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 999 89999999998866555444
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.7e-46 Score=401.68 Aligned_cols=333 Identities=21% Similarity=0.239 Sum_probs=214.7
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.++.+|+|+|.++++.++.++++|+++|||+|||++|++|++..+...+ ...++++|||+|+++|+.||.+.+.++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999998887642 2236789999999999999999999998
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc-cccCccEEEEccccccccCCcHHH-HHHHHhh-
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQ-IKKILSQ- 260 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lIiDEah~~~~~~~~~~-~~~i~~~- 260 (491)
...++++..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++........ +..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999987777777778899999999999999987766 788999999999999987653322 2233222
Q ss_pred ---cCCCCceEEeccCCcH-----------HHHHHHHHH------------------ccCCcEEEecCCCccccc-----
Q 011188 261 ---IRPDRQTLYWSATWPK-----------EVEHLARQY------------------LYNPYKVIIGSPDLKANH----- 303 (491)
Q Consensus 261 ---~~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~----- 303 (491)
..+..+++++|||+.. .+..+...+ ...+..............
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1566899999999842 222222211 122211111000000000
Q ss_pred ---------c------------ee----------eee-------------------------------------------
Q 011188 304 ---------A------------IR----------QHV------------------------------------------- 309 (491)
Q Consensus 304 ---------~------------~~----------~~~------------------------------------------- 309 (491)
. +. +.+
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 000
Q ss_pred ----------------------------------------------eccChhhHHHHHHHHHHhh---ccCCeEEEEeCC
Q 011188 310 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 340 (491)
Q Consensus 310 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~ 340 (491)
.......|...|.+++... ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0000134666667777653 345799999999
Q ss_pred cccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhC-CCCcEEEEeccccccCCCCCCCEEEEcC
Q 011188 341 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 407 (491)
Q Consensus 341 ~~~~~~l~~~L~~~------------~~~~~~i~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 407 (491)
+..++.+++.|+.. |..+..+||++++.+|..++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999863 4556677899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 408 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 408 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
+|+|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999 999 899999999886543
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.4e-45 Score=371.70 Aligned_cols=323 Identities=22% Similarity=0.267 Sum_probs=253.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 8999999999999998 99999999999999999988877662 266799999999999999999999875445
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCce
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 267 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~ 267 (491)
..+..++|+...... ......++|+|+||++|.+.+......+.++++||+||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 678888887655433 3334467999999999999888777778899999999999998765555566666666678899
Q ss_pred EEeccCCcHH---HHHHHHHHccCCcEEEecCCCcc-c---ccceee---------------------------------
Q 011188 268 LYWSATWPKE---VEHLARQYLYNPYKVIIGSPDLK-A---NHAIRQ--------------------------------- 307 (491)
Q Consensus 268 i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~--------------------------------- 307 (491)
+++|||+... +..+...+............... . ......
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999633 33444333222111110000000 0 000000
Q ss_pred ------------------------------------------------------------e-------------------
Q 011188 308 ------------------------------------------------------------H------------------- 308 (491)
Q Consensus 308 ------------------------------------------------------------~------------------- 308 (491)
.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence 0
Q ss_pred ----------------eeccChhhHHHHHHHHHHhh---ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcC------
Q 011188 309 ----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG------ 363 (491)
Q Consensus 309 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~------ 363 (491)
........|...+.+++... ..+.++||||+++..++.+++.|+..++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 00002344667777777775 35679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 364 --DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 364 --~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999998754
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=392.48 Aligned_cols=319 Identities=18% Similarity=0.231 Sum_probs=253.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.+| +|+|+|.++++.+++++++++++|||+|||++|.++++..+.. +.++||++|+++|++|+++.+.++.
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHh
Confidence 344 6999999999999999999999999999999999988877754 6789999999999999999999876
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCC
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 263 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~ 263 (491)
. .+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||||++.+++++..+..++..+++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 4 566777776543 35799999999999988887777899999999999999999999999999999999
Q ss_pred CCceEEeccCCcHHHHHHHHH---HccCCcEEEecCCCcccccceeeeeec---------cChh----------------
Q 011188 264 DRQTLYWSATWPKEVEHLARQ---YLYNPYKVIIGSPDLKANHAIRQHVDI---------VSES---------------- 315 (491)
Q Consensus 264 ~~~~i~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---------------- 315 (491)
..+++++|||+++.. +++.+ ....+..+....... ..+.+.+.. +...
T Consensus 223 ~~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp TCEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred CCeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 999999999998743 33333 334455544433211 112222111 0000
Q ss_pred -------------h------H--------HHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhCCCc---------
Q 011188 316 -------------Q------K--------YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWP--------- 357 (491)
Q Consensus 316 -------------~------k--------~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~--------- 357 (491)
. | ...+..++..+. ...++||||+++..|+.++..|...++.
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 0 0 112233333322 2348999999999999999999775442
Q ss_pred ------------------------------eEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE--
Q 011188 358 ------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-- 405 (491)
Q Consensus 358 ------------------------------~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~-- 405 (491)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCC
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred --cCC----CCChhHHHHhhhhcccCCCc--ceEEEEeCcc-cHHHHHHH
Q 011188 406 --YDF----PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA-NARFAKEL 446 (491)
Q Consensus 406 --~~~----p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~-~~~~~~~l 446 (491)
||. |.++.+|+||+||+||.|.+ |.|++++++. +...+..+
T Consensus 459 ~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 459 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred cccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 89999999999999999974 9999999876 44444443
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.6e-45 Score=402.55 Aligned_cols=320 Identities=23% Similarity=0.289 Sum_probs=258.4
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.+| +|+|+|.++++.++++++++++||||||||++|+++++..+.. ++++|||+||++||.|+.+.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHhh
Confidence 566 7999999999999999999999999999999888887776633 7789999999999999999999987
Q ss_pred CCCCceEEEEECCccC---hhhHHHhhcC-CcEEEeChHHHHHHHhccCccccCccEEEEcccccccc-----------C
Q 011188 184 ASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-----------M 248 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~---~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~-----------~ 248 (491)
..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++.. +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999887 5566667665 99999999999887764 5567899999999986554 7
Q ss_pred CcHHH-HHHHHhhcC-----------CCCceEEeccC-CcHHHH-HHHHHHccCCcEEEecCCCcccccceeeeeeccCh
Q 011188 249 GFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 314 (491)
Q Consensus 249 ~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
+|... +..++..++ +..|++++||| .|..+. .+....+. +.+.... .....+.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS-- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC--
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec--
Confidence 77777 888888776 78999999999 555443 23333332 1111111 2334455555444
Q ss_pred hhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceE-EEcCCCCHHHHHHHHHHHhCCCCcEEEE----ec
Q 011188 315 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA----TD 389 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~i~~~~~~~~r~~~~~~f~~g~~~vLva----T~ 389 (491)
.+...+.+++... +.++||||++++.++.++..|+..++.+. .+||. |.+ ++.|++|+.+|||| |+
T Consensus 296 -~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCC
Confidence 4566677777773 47899999999999999999999999998 99992 455 99999999999999 99
Q ss_pred cccccCCCCC-CCEEEEcCCCC----------------------------------------------------------
Q 011188 390 VAARGLDVKD-VKYVINYDFPG---------------------------------------------------------- 410 (491)
Q Consensus 390 ~~~~Gidi~~-~~~VI~~~~p~---------------------------------------------------------- 410 (491)
++++|||+|+ +++||+||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------ChhHHHHhhhhcccCCCcc--eEEEEeCcccHHHHHHHHHHHH
Q 011188 411 --------------SLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILE 451 (491)
Q Consensus 411 --------------s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~ 451 (491)
+..+|+||+||+||.+..| .++.++..+|...+..|.+.++
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999975432 3444444477888888887776
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.8e-45 Score=397.67 Aligned_cols=332 Identities=21% Similarity=0.252 Sum_probs=214.0
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.++.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...+.++|||+|+++|+.||.+++.++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4677999999999999999999999999999999999999988776542 1236679999999999999999999998
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc-cccCccEEEEccccccccCCc-HHHHHHHHhh-
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQ- 260 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lIiDEah~~~~~~~-~~~~~~i~~~- 260 (491)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++||+||||++...+. ...+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999877666666667789999999999999987666 688999999999999987653 2222233322
Q ss_pred ---cCCCCceEEeccCCcH-----------HHHHHHHH------------------HccCCcEEEecCCCccccc-----
Q 011188 261 ---IRPDRQTLYWSATWPK-----------EVEHLARQ------------------YLYNPYKVIIGSPDLKANH----- 303 (491)
Q Consensus 261 ---~~~~~~~i~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~----- 303 (491)
..+..+++++|||+.. .+..+... +...|..............
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1456899999999842 22222211 1222222221111000000
Q ss_pred ------------c---------ee----------eee-------------------------------------------
Q 011188 304 ------------A---------IR----------QHV------------------------------------------- 309 (491)
Q Consensus 304 ------------~---------~~----------~~~------------------------------------------- 309 (491)
. +. +.+
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 000
Q ss_pred ----------------------------------------------eccChhhHHHHHHHHHHhh---ccCCeEEEEeCC
Q 011188 310 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 340 (491)
Q Consensus 310 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~ 340 (491)
.......|...|.++|.+. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 0000234566666777664 345799999999
Q ss_pred cccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhC-CCCcEEEEeccccccCCCCCCCEEEEcC
Q 011188 341 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 407 (491)
Q Consensus 341 ~~~~~~l~~~L~~~------------~~~~~~i~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 407 (491)
+..++.+++.|+.. |.....+||++++.+|.+++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999876 4555667899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 408 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 408 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
+|+|+..|+||+|| ||. +.|.++.|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999 999 78999999987644
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.8e-45 Score=400.80 Aligned_cols=320 Identities=20% Similarity=0.286 Sum_probs=256.0
Q ss_pred HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 103 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 103 ~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
..||. | |+|.++|+.+++++|+++++|||||||+ |.+|++..+.. .++++|||+||++|+.|+.+.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 47888 9 9999999999999999999999999998 88888888765 2678999999999999999999999
Q ss_pred cCCCCc----eEEEEECCccChhh---HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHH
Q 011188 183 GASSKI----KSTCIYGGVPKGPQ---VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 255 (491)
Q Consensus 183 ~~~~~~----~v~~~~~g~~~~~~---~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~ 255 (491)
+...++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||++++ +...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999887663 334445 89999999999987665 66899999999999998 467777
Q ss_pred HHHhhc-----------CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 256 KILSQI-----------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 256 ~i~~~~-----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
.++..+ +...|++++|||++.. ..+...++.++..+.+.... .....+.+.+. ...+...+.++
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHH
Confidence 777665 3567899999999876 43333333333333222222 22233444333 34455666677
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEE----eccccccCCCCCC
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARGLDVKDV 400 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~~ 400 (491)
+... +.++||||++++.|+.+++.|+.. +++..+||++. .+++.|++|+.+|||| |+++++|||+|+|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 7654 468999999999999999999988 99999999984 6889999999999999 8999999999995
Q ss_pred -CEEEEcCCC----------------------------------------------------------------------
Q 011188 401 -KYVINYDFP---------------------------------------------------------------------- 409 (491)
Q Consensus 401 -~~VI~~~~p---------------------------------------------------------------------- 409 (491)
++||+++.|
T Consensus 343 I~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 422 (1054)
T 1gku_B 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 422 (1054)
T ss_dssp CCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEE
T ss_pred ccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeeccee
Confidence 999999999
Q ss_pred -CChhHHHHhhhhcccCCCcc--eEEEEeCcccHHHHHHHHHHHHH
Q 011188 410 -GSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 410 -~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
.+..+|+||+||+||.|..| .+++++..++...+..|.+.++.
T Consensus 423 ~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 423 FPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 48888888888888888887774
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.2e-45 Score=390.78 Aligned_cols=325 Identities=23% Similarity=0.303 Sum_probs=227.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH-HHHHHHhcCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGAS 185 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~-~~~~~~~~~~ 185 (491)
.+|+|+|.++++.++.++++|+++|||+|||++|++|++..+...+. ...+.++|||+|+++|+.|| .+++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 48999999999999999999999999999999999999887765210 11236799999999999999 9999998765
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHH------hccCccccCccEEEEccccccccCC-cHHHHHHHH
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKIL 258 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l------~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~ 258 (491)
++.+..++|+.........+...++|+|+||++|.+.+ ......+.++++|||||||++.... +...+...+
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48899999998877777777788999999999999888 3445677899999999999986543 222222222
Q ss_pred hh----cC---------CCCceEEeccCCcH-----------HHHHHHHHHcc------------------CCcEEEe-c
Q 011188 259 SQ----IR---------PDRQTLYWSATWPK-----------EVEHLARQYLY------------------NPYKVII-G 295 (491)
Q Consensus 259 ~~----~~---------~~~~~i~~SAT~~~-----------~~~~~~~~~~~------------------~~~~~~~-~ 295 (491)
.. .. +.++++++|||+.. .+..+...+.. .|..... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 11 66799999999975 12222222211 1111110 0
Q ss_pred CCCcccc--c-------------ceeeeee--------------------------------------------------
Q 011188 296 SPDLKAN--H-------------AIRQHVD-------------------------------------------------- 310 (491)
Q Consensus 296 ~~~~~~~--~-------------~~~~~~~-------------------------------------------------- 310 (491)
....... . .+.....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 0000000
Q ss_pred ----------------------------cc-------------------------ChhhHHHHHHHHHHhhc---c-CCe
Q 011188 311 ----------------------------IV-------------------------SESQKYNKLVKLLEDIM---D-GSR 333 (491)
Q Consensus 311 ----------------------------~~-------------------------~~~~k~~~l~~~l~~~~---~-~~~ 333 (491)
.. ....|...|.+++.... + +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00 01122223334444321 2 679
Q ss_pred EEEEeCCcccHHHHHHHHHhC------CCceEEEcCC--------CCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC
Q 011188 334 ILIFMDTKKGCDQITRQLRMD------GWPALSIHGD--------KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 399 (491)
Q Consensus 334 ~lVf~~~~~~~~~l~~~L~~~------~~~~~~i~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 399 (491)
+||||+++..++.+++.|+.. |+++..+||+ |++.+|..++++|++|+.+|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCc
Q 011188 400 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 437 (491)
Q Consensus 400 ~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 437 (491)
+++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999976654 44545443
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.8e-44 Score=369.88 Aligned_cols=321 Identities=20% Similarity=0.236 Sum_probs=232.4
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|. .|+|+|..+++.+++|+ |+.++||+|||++|++|++..... ++.++||+||++||.|.++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 354 89999999999999998 999999999999999999866543 5679999999999999999999999
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhccC------ccccCccEEEEccccccc-cCC------
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRML-DMG------ 249 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~~~~~lIiDEah~~~-~~~------ 249 (491)
..+++++.+++||.+.. .+....+++|+|+||++| .+++.... ..++++.++|+||||+|+ +.+
T Consensus 140 ~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 99999999999998653 444555799999999999 78776542 557899999999999998 443
Q ss_pred ---------cHHHHHHHHhhcCC--------------------CCceE------------------------EeccCCcH
Q 011188 250 ---------FEPQIKKILSQIRP--------------------DRQTL------------------------YWSATWPK 276 (491)
Q Consensus 250 ---------~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~~~ 276 (491)
|...+..++..+++ .+|++ ++|||.+.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 55677788777764 45543 88999754
Q ss_pred HHHHH-----HHHHccC--------C-----------------------------cEEEecCCCccccccee--------
Q 011188 277 EVEHL-----ARQYLYN--------P-----------------------------YKVIIGSPDLKANHAIR-------- 306 (491)
Q Consensus 277 ~~~~~-----~~~~~~~--------~-----------------------------~~~~~~~~~~~~~~~~~-------- 306 (491)
....+ +..++.. + ..+.+.... .....+.
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~-~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNEN-QTLASITFQNYFRLY 376 (853)
T ss_dssp -----------------------------------------------------------CCCCC-EEEEEEEHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccc-cccceeehHHHHhhh
Confidence 22111 1111110 0 001111110 0000011
Q ss_pred ---------------------------------------eeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHH
Q 011188 307 ---------------------------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQ 346 (491)
Q Consensus 307 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~ 346 (491)
+.+.......|...+.+.+... ..+.++||||+|++.++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 1123356678999999988765 456789999999999999
Q ss_pred HHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC--------------------------
Q 011188 347 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------- 400 (491)
Q Consensus 347 l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~-------------------------- 400 (491)
|+..|++.|+++..+||+..+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999999999999999999988888888889888 599999999999999873
Q ss_pred -----------CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 401 -----------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 401 -----------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987764
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-44 Score=408.76 Aligned_cols=346 Identities=19% Similarity=0.266 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCC---CCCCCCEEEEEccc
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL---APGDGPIVLVLAPT 168 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~~vlil~Pt 168 (491)
||+.....+ .||.+|+++|.++++.++ +++|++++||||||||++|.+|++..+...... ....+.++|+++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 455443333 378899999999999887 578999999999999999999999998764321 22357889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC--ccccCccEEEEccccccc
Q 011188 169 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRML 246 (491)
Q Consensus 169 ~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lIiDEah~~~ 246 (491)
++||+|+.+.+.+.....+++|..++|+....... ..+++|+|||||++..++.+.. ..++++++|||||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999987778899999999988654332 3468999999999866655432 236789999999999776
Q ss_pred cCCcHHHHHHHHh-------hcCCCCceEEeccCCcHHHHHHHHHHccCCc--EEEecCCCcccccceeeeeeccChh--
Q 011188 247 DMGFEPQIKKILS-------QIRPDRQTLYWSATWPKEVEHLARQYLYNPY--KVIIGSPDLKANHAIRQHVDIVSES-- 315 (491)
Q Consensus 247 ~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-- 315 (491)
+ ..+..++.++. ..++..|+|++|||+|+ .+++++++...+. ...+... ..+..+.+.+......
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcch
Confidence 6 56777766554 34678899999999986 5667766544321 1122211 2233444443332221
Q ss_pred -hHHHH----HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC------------------------------------
Q 011188 316 -QKYNK----LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------------ 354 (491)
Q Consensus 316 -~k~~~----l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------ 354 (491)
..... +.+.+.+...++++||||++++.|+.+++.|.+.
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (1724)
T 4f92_B 297 IKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDL 376 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHH
Confidence 12222 2333344445678999999999999998887431
Q ss_pred -CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cCC------CCChhHHHHhhhhcc
Q 011188 355 -GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF------PGSLEDYVHRIGRTG 423 (491)
Q Consensus 355 -~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~~------p~s~~~~~Qr~GR~g 423 (491)
...+..+||+|++++|..+++.|++|.++|||||+++++|||+|..++||. |++ |.++.+|.||+||||
T Consensus 377 l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 377 LPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred hhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 123789999999999999999999999999999999999999999999985 443 468999999999999
Q ss_pred cCCC--cceEEEEeCcccHHHHHHHH
Q 011188 424 RAGA--KGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 424 R~g~--~g~~~~~~~~~~~~~~~~l~ 447 (491)
|.|. .|.++++..+++......++
T Consensus 457 R~g~d~~G~~ii~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGELQYYLSLL 482 (1724)
T ss_dssp CTTTCSCEEEEEEEESTTCCHHHHHT
T ss_pred CCCCCCccEEEEEecchhHHHHHHHH
Confidence 9875 58999998888766655544
No 36
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.3e-43 Score=360.59 Aligned_cols=337 Identities=19% Similarity=0.250 Sum_probs=264.4
Q ss_pred HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 103 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 103 ~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
..|+ .|+|+|..+++.+++|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3577 99999999999999987 999999999999999999766554 557999999999999999999999
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc------CccccCccEEEEccccccc-cC------
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM------ 248 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lIiDEah~~~-~~------ 248 (491)
...+++++.+++||.+.. .+....+++|+|+||++| .+++... ...++.+.++|+||||+|+ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 999999999999998643 344455789999999999 7777654 3557889999999999998 32
Q ss_pred ---------CcHHHHHHHHhhcC---------CCCceE-----------------EeccCCcHH---HHHHH--HHHccC
Q 011188 249 ---------GFEPQIKKILSQIR---------PDRQTL-----------------YWSATWPKE---VEHLA--RQYLYN 288 (491)
Q Consensus 249 ---------~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~---~~~~~--~~~~~~ 288 (491)
+|...+..++..++ +.+|++ ++|||.+.. +.... ..++..
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47788999999997 678888 899998643 33222 222221
Q ss_pred Cc--------EEEecCCC----------------------cc------ccccee--------------------------
Q 011188 289 PY--------KVIIGSPD----------------------LK------ANHAIR-------------------------- 306 (491)
Q Consensus 289 ~~--------~~~~~~~~----------------------~~------~~~~~~-------------------------- 306 (491)
.. .+.+.... .. ....+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 11 11111100 00 000000
Q ss_pred ---------------------eeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCC
Q 011188 307 ---------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 364 (491)
Q Consensus 307 ---------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~ 364 (491)
+.+.......|...+.+.+.+. ..+.++||||+|++.++.|+..|++.|+++..+|++
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 1122345677888888888765 456689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC--------------------------------------------
Q 011188 365 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------------------------- 400 (491)
Q Consensus 365 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~-------------------------------------------- 400 (491)
..+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888888888877 599999999999999965
Q ss_pred --------CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHH----HHHHHHHHHhC
Q 011188 401 --------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA----KELITILEEAG 454 (491)
Q Consensus 401 --------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~ 454 (491)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.-+- ..+..++.+.+
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLN 637 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTT
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhC
Confidence 4999999999999999999999999999999999998775332 34555555543
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.1e-43 Score=379.38 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=243.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
+|+|+|.++++.+++++++++++|||+|||++|++++...+.. +.++||++|+++|+.|+++.+.++.. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 7999999999999999999999999999999999988776554 67899999999999999999998654 4
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCce
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 267 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~ 267 (491)
+.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++...+..++..+++..++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 6788888876542 347999999999999988877778899999999999999999999999999999999999
Q ss_pred EEeccCCcHHHHHHHHHHcc---CCcEEEecCCCcccccceeeee-----------------------------------
Q 011188 268 LYWSATWPKEVEHLARQYLY---NPYKVIIGSPDLKANHAIRQHV----------------------------------- 309 (491)
Q Consensus 268 i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 309 (491)
|++|||+++.. ++..++.. .+..+...... ...+.+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 99999997644 45544431 22222211111 00111110
Q ss_pred ----------------------------------------------------------eccChhhHHHHHHHHHHhhccC
Q 011188 310 ----------------------------------------------------------DIVSESQKYNKLVKLLEDIMDG 331 (491)
Q Consensus 310 ----------------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~ 331 (491)
.......+...+...+... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 0001223344555555543 34
Q ss_pred CeEEEEeCCcccHHHHHHHHHhCCC---------------------------------------ceEEEcCCCCHHHHHH
Q 011188 332 SRILIFMDTKKGCDQITRQLRMDGW---------------------------------------PALSIHGDKSQAERDW 372 (491)
Q Consensus 332 ~~~lVf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~i~~~~~~~~r~~ 372 (491)
.++||||++++.|+.++..|...++ .+..+|+++++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 5899999999999999999977655 4789999999999999
Q ss_pred HHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCC---------ChhHHHHhhhhcccCC--CcceEEEEeC
Q 011188 373 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------SLEDYVHRIGRTGRAG--AKGTAYTFFT 436 (491)
Q Consensus 373 ~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~---------s~~~~~Qr~GR~gR~g--~~g~~~~~~~ 436 (491)
+++.|++|.++|||||+++++|||+|+ ..||+++.|. |+.+|+||+|||||.| ..|.+++++.
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999999 5556555554 9999999999999998 4577777773
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-43 Score=373.01 Aligned_cols=333 Identities=20% Similarity=0.253 Sum_probs=247.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc
Q 011188 95 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 168 (491)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 168 (491)
+.+.+.+...+| +||++|.++++.++++ .++++++|||||||++|++|++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344445567788 9999999999998865 589999999999999999999988765 6789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 169 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 169 ~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
++||.|+++.+.++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999988888999999998865443 333444 48999999988744 45578999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
+.... ...+.......++++||||+.+....+. +..+.....+.... .....+...+ .. ..+...+.+.
T Consensus 502 ~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~~~~--~~-~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQTML--VP-MDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCEECC--CC-SSTHHHHHHH
T ss_pred hhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceEEEE--ec-cchHHHHHHH
Confidence 63221 2223333457899999999866443332 23332222222111 1111222211 22 2234445555
Q ss_pred HHh-hccCCeEEEEeCCcc--------cHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecccc
Q 011188 325 LED-IMDGSRILIFMDTKK--------GCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 392 (491)
Q Consensus 325 l~~-~~~~~~~lVf~~~~~--------~~~~l~~~L~~---~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 392 (491)
+.. ...+.+++|||++.+ .++.+++.|+. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 543 445678999999764 47888888987 467899999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCC-ChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHh
Q 011188 393 RGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 453 (491)
Q Consensus 393 ~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 453 (491)
+|+|+|++++||+++.|. +...+.||+||+||.|+.|.|++++++.+.. ....++.+++.
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~~~rl~~l~~~ 711 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-AMERLRFFTLN 711 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-HHHHHHHHHTC
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-HHHHHHHHHhh
Confidence 999999999999999995 7889999999999999999999998854443 33344445544
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-42 Score=392.05 Aligned_cols=343 Identities=17% Similarity=0.200 Sum_probs=265.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
+.++..+.+...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+...+ +.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHH
Confidence 556777888888899999999999999975 567999999999999999999999988642 5679999999999
Q ss_pred HHHHHHHHH-HhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc--CccccCccEEEEccccccccC
Q 011188 172 AVQIQQEST-KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDM 248 (491)
Q Consensus 172 ~~q~~~~~~-~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lIiDEah~~~~~ 248 (491)
|.|.++.+. +|+...++++..++|+...+.. ...+++|+||||+++..++.+. ...++++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 999999987 4777788999999987653222 2345799999999997776553 234788999999999988774
Q ss_pred CcHHHHHHHHhh-------cCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccCh---hh--
Q 011188 249 GFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE---SQ-- 316 (491)
Q Consensus 249 ~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 316 (491)
.+..++.++.. .++..|+|++|||+++ ..++++++...+..+..-... ..+..+...+..... ..
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhh
Confidence 56666655543 4578899999999986 567777765554333322222 223334433332221 11
Q ss_pred --HHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC----------------------------------CCceEE
Q 011188 317 --KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----------------------------------GWPALS 360 (491)
Q Consensus 317 --k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~ 360 (491)
....+...+....+++++||||++++.|+.++..|... ...+..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 12234455666677789999999999999888766321 134789
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cC------CCCChhHHHHhhhhcccCCC--c
Q 011188 361 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD------FPGSLEDYVHRIGRTGRAGA--K 428 (491)
Q Consensus 361 i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~------~p~s~~~~~Qr~GR~gR~g~--~ 428 (491)
+|++|++.+|..+++.|++|.++|||||+++++|||+|...+||. |+ .|.++.+|.||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999998883 22 35689999999999999987 5
Q ss_pred ceEEEEeCcccHHHHHHHH
Q 011188 429 GTAYTFFTAANARFAKELI 447 (491)
Q Consensus 429 g~~~~~~~~~~~~~~~~l~ 447 (491)
|.|++++.+.+..++..++
T Consensus 1299 G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHHT
T ss_pred eEEEEEecchHHHHHHHHh
Confidence 8999999988877766553
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.1e-42 Score=377.68 Aligned_cols=324 Identities=20% Similarity=0.209 Sum_probs=253.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc----CC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 91 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 91 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~----~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
++++....+.+...--.+|||+|.++++.++. ++ ++++++|||+|||++|+++++..+.. +++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 34566666666544333689999999999886 65 89999999999999999888776554 679999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
++||++|+.|+++.+.++....++++..+.+....... ...+.. .++|+|+||+.|. ....+.++++||+|
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEe
Confidence 99999999999999998877777888888776544332 333444 4899999997663 34567899999999
Q ss_pred cccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHH
Q 011188 241 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 320 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 320 (491)
|+|++ ......++..++...++++||||+++....+....+.++.. +.... .....+...+.... +...
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~--i~~~~-~~r~~i~~~~~~~~---~~~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI--IATPP-ARRLAVKTFVREYD---SMVV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE--CCCCC-CBCBCEEEEEEECC---HHHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE--EecCC-CCccccEEEEecCC---HHHH
Confidence 99994 34455666777778999999999876655554443332221 11111 12223333332222 2333
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 398 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 398 (491)
...++.++..+++++|||++++.++.+++.|++. +..+..+||+|++.+|..++++|++|+.+|||||+++++|||+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 4445556667789999999999999999999886 78999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-CCChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 399 DVKYVINYDF-PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 399 ~~~~VI~~~~-p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
++++||+++. +++..+|.||+||+||.|+.|.|++++.+.
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999988 578999999999999999999999998764
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.7e-42 Score=356.98 Aligned_cols=312 Identities=18% Similarity=0.174 Sum_probs=239.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
.+|+|+|.++++.++.++++++++|||+|||++|+.++...+.. ...++|||+|+++|+.||.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 48999999999999999999999999999999999988877654 13489999999999999999999997766
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 266 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~ 266 (491)
+..+..++++.....+ .....+|+|+||+.|... ....+.++++||+||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888888766544 455689999999976442 234567899999999999874 567788888888899
Q ss_pred eEEeccCCcHHHHHHHH-HHccCCcEEEecCCCc-----ccccceeeee---------------------eccChhhHHH
Q 011188 267 TLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDL-----KANHAIRQHV---------------------DIVSESQKYN 319 (491)
Q Consensus 267 ~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~---------------------~~~~~~~k~~ 319 (491)
+++||||+++....... ..+..+..+.....+. .....+.... .......+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999765432211 1122332222111110 0000000000 1111223445
Q ss_pred HHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccccCC
Q 011188 320 KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLD 396 (491)
Q Consensus 320 ~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gid 396 (491)
.+.+++.... .+.++||||+ .++++.+++.|...+.++..+||+++..+|.++++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 5666665542 2345666666 899999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 397 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 397 i~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
+|++++||++++|+++..|.|++||+||.|+.+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999998875555554
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.3e-41 Score=311.79 Aligned_cols=239 Identities=65% Similarity=1.097 Sum_probs=220.3
Q ss_pred CCHHHHHHHHhhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHH
Q 011188 60 MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~ 139 (491)
.+.++++.+++...+.+.+...|.|+.+|+++++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHH
Q 011188 140 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 219 (491)
Q Consensus 140 ~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~ 219 (491)
|++|++.++..++......++++||++||++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987655555568889999999999999999999998888899999999998888888888889999999999
Q ss_pred HHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCC
Q 011188 220 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 298 (491)
Q Consensus 220 l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
|.+++......+.++++||+||||++.+++|...+..++..+++..|++++|||+++.+..+++.++.+|..+.+...+
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 9999988888889999999999999999999999999999999999999999999999999999999999988876643
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.7e-43 Score=363.86 Aligned_cols=325 Identities=18% Similarity=0.148 Sum_probs=241.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 91 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 91 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
+++++.+.+.+... ...++|+|+.+++.+++++++++++|||||||++|++|++..+.. .++++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555555444332 467899988889999999999999999999999999999988876 2678999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc
Q 011188 171 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 250 (491)
Q Consensus 171 L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~ 250 (491)
||.|+.+.+..+ .+. ..... .. .....+..+.++|.+.+.+.+... ..+.++++||+||||++ +.+|
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcCC------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 999999888632 222 11111 00 011234567888988887766554 45789999999999998 6667
Q ss_pred HHHHHHHHhhcC-CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc
Q 011188 251 EPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 329 (491)
Q Consensus 251 ~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 329 (491)
...+..++..++ ++.|+++||||++..+..+.. .++..+.+.... +. .+...+...+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh--
Confidence 777777777764 689999999999875443222 122222222110 00 001122233333
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEE------
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV------ 403 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V------ 403 (491)
..+++||||++++.++.+++.|++.++++..+||+ +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 35689999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred --------------EEcCCCCChhHHHHhhhhcccCCC-cceEEEEeC---cccHHHHHHHHHHHHHhCCCCCHHH
Q 011188 404 --------------INYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---AANARFAKELITILEEAGQKVSPEL 461 (491)
Q Consensus 404 --------------I~~~~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~l 461 (491)
|+++.|.+.++|+||+||+||.|. +|.+++|++ +.+...+..+...+.-....+|+.+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~ 504 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 504 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence 777779999999999999999965 899999998 7777788888887766666665533
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-41 Score=343.45 Aligned_cols=311 Identities=18% Similarity=0.131 Sum_probs=224.8
Q ss_pred CCCCCcHHHHHHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 105 GFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 105 ~~~~~~~~Q~~~i~~i~~~~~~-ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
|+.+|+|+|+ +++.+++++++ ++++|||||||++|++|++.++.. .++++||++||++|+.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCc-
Confidence 5678999985 79999998886 888999999999999999987765 2678999999999999999988532
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHh-hcC
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS-QIR 262 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~-~~~ 262 (491)
.+.. ....... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+...+..+.. ...
T Consensus 72 -----~v~~--~~~~~~~---~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRY--QTPAVKS---DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEE--CCTTCSC---CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeee--eeccccc---cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 2211 1111100 11334679999999998877654 45789999999999987 3333333322322 235
Q ss_pred CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcc
Q 011188 263 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 342 (491)
Q Consensus 263 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~ 342 (491)
++.|+++||||++.....+ +...+..+...... .. ..+. .+...+.+ ..+++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~---~~~~---------~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PE---RSWN---------TGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CS---SCCS---------SSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC---Cc---hhhH---------HHHHHHHh--CCCCEEEEcCCHH
Confidence 6799999999997643322 22233333222110 00 0000 11222333 2568999999999
Q ss_pred cHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcC---------------
Q 011188 343 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD--------------- 407 (491)
Q Consensus 343 ~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~--------------- 407 (491)
.++.+++.|++.++.+..+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999754 57899999999999999999999999999 9999999
Q ss_pred -----CCCChhHHHHhhhhcccCCC-cceEEEEeCccc---HHHHHHHHHHHHHhCCCCCHHH
Q 011188 408 -----FPGSLEDYVHRIGRTGRAGA-KGTAYTFFTAAN---ARFAKELITILEEAGQKVSPEL 461 (491)
Q Consensus 408 -----~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~l 461 (491)
.|.+..+|+||+||+||.|. .|.+++|+..++ ..........+...+.++|.++
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 788888875432 2222222344445666777555
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3e-41 Score=344.29 Aligned_cols=294 Identities=20% Similarity=0.226 Sum_probs=222.2
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
.+|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||||+++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999999887654 456999999999999999999995
Q ss_pred Cce-EEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 187 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 187 ~~~-v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
++. +..++|+... ..+|+|+||+.+...+... ..++++||+||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 466 7777766533 4689999999987765421 2458999999999999887653 44444 567
Q ss_pred ceEEeccCCcHH-------------------HHHHHHHHccCCcE--EEecCCCc-----------------------cc
Q 011188 266 QTLYWSATWPKE-------------------VEHLARQYLYNPYK--VIIGSPDL-----------------------KA 301 (491)
Q Consensus 266 ~~i~~SAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~-----------------------~~ 301 (491)
+++++|||+... ..++...++..+.. +.+..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999998621 22221111211111 11110000 00
Q ss_pred ccceeeee---------------------eccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEE
Q 011188 302 NHAIRQHV---------------------DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 360 (491)
Q Consensus 302 ~~~~~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 360 (491)
...+.+.+ .......|...+.+++.. ..+.++||||++++.++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 00000000 012234567778888877 356799999999999999999884 557
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCc-ceEEE--EeCc
Q 011188 361 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYT--FFTA 437 (491)
Q Consensus 361 i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~--~~~~ 437 (491)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+. +.+++ +++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999854 44444 4544
Q ss_pred c
Q 011188 438 A 438 (491)
Q Consensus 438 ~ 438 (491)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 3
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-39 Score=346.75 Aligned_cols=336 Identities=18% Similarity=0.258 Sum_probs=246.7
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCE
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 161 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 161 (491)
.++.+|+++++++.+.+.+...+ ..|++.|+++|+.++. ++++++++|||||||+ ++|++...... ..+.+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCce
Confidence 35678999999999999999887 6899999999988775 5679999999999999 45554222111 1112567
Q ss_pred EEEEcccHHHHHHHHHHHHHhc-CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 162 VLVLAPTRELAVQIQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~-~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
++|++|+++|+.|+.+.+.+.. ...+..+........ ......+|+++||+++.+.+... ..+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999998776543 222222221111100 11245789999999999877664 458899999999
Q ss_pred cccc-cccCCcH-HHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHH
Q 011188 241 EADR-MLDMGFE-PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 318 (491)
Q Consensus 241 Eah~-~~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 318 (491)
|+|. .++.++. ..+..+. ...++.+++++|||++. ..+.. ++.....+.+.... ..+.+.+......++.
T Consensus 216 Eah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC----CCEEEECCSSCCSCHH
T ss_pred CccccccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc----cceEEEEecCCchhHH
Confidence 9995 5553322 2333343 33468899999999964 34444 44444444433221 2344444333444444
Q ss_pred HHHHHHHHhh---ccCCeEEEEeCCcccHHHHHHHHHh-----------CCCceEEEcCCCCHHHHHHHHHHHh-----C
Q 011188 319 NKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRM-----------DGWPALSIHGDKSQAERDWVLSEFK-----A 379 (491)
Q Consensus 319 ~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-----------~~~~~~~i~~~~~~~~r~~~~~~f~-----~ 379 (491)
......+... ..++++||||+++++++.+++.|++ .++.+..+||++++++|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3333333222 2467999999999999999999975 5778999999999999999999999 9
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 380 GKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 380 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
|..+|||||+++++|||+|++++||+++. |.|..+|+||+||+||. ..|.|+.|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999999887 88999999999999999 89999999987654
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3e-42 Score=346.15 Aligned_cols=288 Identities=18% Similarity=0.183 Sum_probs=201.6
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCcc
Q 011188 119 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 198 (491)
Q Consensus 119 ~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~ 198 (491)
++++++++++++|||||||++|++|++..+... +++++|++||++||.|+++.+..+. +....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC------eEEecccce
Confidence 467899999999999999999999999887652 6789999999999999999887542 211111100
Q ss_pred ChhhHHHhhcCCcEEEeChHH---------HHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCCCceE
Q 011188 199 KGPQVRDLQKGVEIVIATPGR---------LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTL 268 (491)
Q Consensus 199 ~~~~~~~~~~~~~Iiv~T~~~---------l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i 268 (491)
.++||++ +...+.. ...+.++++||+||+|++ +.++...+..+.... ++..|++
T Consensus 71 --------------~v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 71 --------------AHGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp --------------CCCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred --------------eccCCccceeeecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 2455543 3332222 344789999999999998 333333333332222 3678999
Q ss_pred EeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHH
Q 011188 269 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 348 (491)
Q Consensus 269 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 348 (491)
+||||+++.+..+... ..+..... . .++...+ ..+...+.+ .++++||||++++.++.++
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~------------~---~~~~~~~-~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQ------------T---DIPSEPW-NTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEE------------C---CCCSSCC-SSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEeCCCCchhhhhhhc--CCCeeEee------------e---ccChHHH-HHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 9999997654322211 01111110 0 0111111 111222222 3568999999999999999
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE-------------------cCCC
Q 011188 349 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------------------YDFP 409 (491)
Q Consensus 349 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~-------------------~~~p 409 (491)
+.|+..++++..+|| ++|..+++.|++|+.+|||||+++++|||+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4688999999999999999999999999999 999996 8889
Q ss_pred CChhHHHHhhhhcccC-CCcceEEEEe---CcccHHHHHHHHHHHHHhCCCCCHH
Q 011188 410 GSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAGQKVSPE 460 (491)
Q Consensus 410 ~s~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~ 460 (491)
.+..+|+||+||+||. +++|.|++|+ ++.+...+..+...+.....++|..
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 9999999999999998 6899999996 6777777888887777777776654
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7.1e-41 Score=349.52 Aligned_cols=306 Identities=18% Similarity=0.203 Sum_probs=217.3
Q ss_pred CCcHHHH-----HHHHHhh------cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 011188 108 EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 176 (491)
Q Consensus 108 ~~~~~Q~-----~~i~~i~------~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 176 (491)
.|+++|+ ++|+.++ +++++++++|||||||++|++|++..+.. .++++||++||++||.|++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEccHHHHHHHHH
Confidence 8999999 9999888 89999999999999999999999988765 2678999999999999999
Q ss_pred HHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHH
Q 011188 177 QESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK 256 (491)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~ 256 (491)
+.+..+. +.. ..+... .....+.-+-+.+.+.+.+.+... ..+.++++||+||||++ +..+...+..
T Consensus 288 ~~l~~~~----i~~--~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~ 354 (673)
T 2wv9_A 288 EALRGLP----VRY--LTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGY 354 (673)
T ss_dssp HHTTTSC----CEE--CCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHH
T ss_pred HHHhcCC----eee--eccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHH
Confidence 9887653 211 000000 000112234555666665555543 56789999999999998 2212223333
Q ss_pred HHhhc-CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEE
Q 011188 257 ILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRIL 335 (491)
Q Consensus 257 i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~l 335 (491)
+...+ ++..|+++||||++..+..+... ..++..... ..+... ...++..+.+ .++++|
T Consensus 355 l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~---------------~~~~~~-~~~~l~~l~~--~~~~~l 414 (673)
T 2wv9_A 355 IATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS---------------EIPDRA-WSSGFEWITD--YAGKTV 414 (673)
T ss_dssp HHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSC-CSSCCHHHHS--CCSCEE
T ss_pred HHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee---------------ecCHHH-HHHHHHHHHh--CCCCEE
Confidence 33333 36789999999997653222110 111111100 011110 1112222222 467899
Q ss_pred EEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----------
Q 011188 336 IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN---------- 405 (491)
Q Consensus 336 Vf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~---------- 405 (491)
|||++++.++.+++.|+..++++..+||. +|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 99999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred ----------cCCCCChhHHHHhhhhcccC-CCcceEEEEe---CcccHHHHHHHHHHHHHhCCCCC
Q 011188 406 ----------YDFPGSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAGQKVS 458 (491)
Q Consensus 406 ----------~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~ 458 (491)
++.|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..+...+.-...+++
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 67899999999999999999 7899999996 46666666666665544444443
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-40 Score=339.49 Aligned_cols=280 Identities=22% Similarity=0.238 Sum_probs=212.1
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..++++|.++++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+++.+.+..
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~--- 281 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH--- 281 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---
Confidence 35667777777777788999999999999999999888752 5579999999999999999887654
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 266 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~ 266 (491)
+..+...+|+.. ...+++|+|+||++| +......+.++++||||||| +.+.+|...+..+++.++...+
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 233455556543 345689999999998 34556778889999999997 4566678888889988887766
Q ss_pred --eEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccH
Q 011188 267 --TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGC 344 (491)
Q Consensus 267 --~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~ 344 (491)
++++|||++..+. ...+....+.... ...+ ........ + ....++++||||++++.+
T Consensus 351 ~llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~i----~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPNIEEVALSN---TGEI----PFYGKAIP-------I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTTEEEEECBS---CSSE----EETTEEEC-------G-GGSSSSEEEEECSCHHHH
T ss_pred ceEEEECCCCCcccc------cCCcceEEEeecc---cchh----HHHHhhhh-------h-hhccCCcEEEEeCCHHHH
Confidence 6778999987311 1111111111100 0000 00000000 0 122467999999999999
Q ss_pred HHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE----------EcC-------
Q 011188 345 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----------NYD------- 407 (491)
Q Consensus 345 ~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI----------~~~------- 407 (491)
+.+++.|++.++++..+||++++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999999999999999999865 4566679999999999999997 99988 677
Q ss_pred ----CCCChhHHHHhhhhcccCCCcceEEEEeCcccHHH
Q 011188 408 ----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 442 (491)
Q Consensus 408 ----~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 442 (491)
.|.+.++|+||+||+|| |+.|. +.|+++.+...
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 99998765443
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3e-39 Score=326.34 Aligned_cols=276 Identities=19% Similarity=0.220 Sum_probs=197.1
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEE
Q 011188 114 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 193 (491)
Q Consensus 114 ~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~ 193 (491)
.....++.+++++++++|||||||++|++|++..+.. .++++||++||++|+.|+.+.+..+ .+...
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~ 78 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQ 78 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTS------CEEEC
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCc------eEeEE
Confidence 3334456678899999999999999999999988775 2678999999999999999988732 22111
Q ss_pred ECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc-----ccCCcHHHHHHHHhhcCCCCceE
Q 011188 194 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-----LDMGFEPQIKKILSQIRPDRQTL 268 (491)
Q Consensus 194 ~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~-----~~~~~~~~~~~i~~~~~~~~~~i 268 (491)
.+... .....+..+.++|.+.+...+... ..+.++++||+||||++ ...+|... +. ..+..|++
T Consensus 79 ~~~~~-----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~~--~~~~~~~i 147 (459)
T 2z83_A 79 TSAVQ-----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---KV--ELGEAAAI 147 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---HH--HTTSCEEE
T ss_pred ecccc-----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---Hh--ccCCccEE
Confidence 11100 011234567888998887776653 45789999999999983 33222111 11 23678999
Q ss_pred EeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHH
Q 011188 269 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 348 (491)
Q Consensus 269 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 348 (491)
+||||++..+..+... ..|+...... .+. .+...+...+.. ..+++||||++++.++.++
T Consensus 148 l~SAT~~~~~~~~~~~--~~pi~~~~~~---------------~~~-~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~ 207 (459)
T 2z83_A 148 FMTATPPGTTDPFPDS--NAPIHDLQDE---------------IPD-RAWSSGYEWITE--YAGKTVWFVASVKMGNEIA 207 (459)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECC---------------CCS-SCCSSCCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEEcCCCcchhhhccC--CCCeEEeccc---------------CCc-chhHHHHHHHHh--cCCCEEEEeCChHHHHHHH
Confidence 9999998654222110 1222221100 000 000111222333 2568999999999999999
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE--------------------cCC
Q 011188 349 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--------------------YDF 408 (491)
Q Consensus 349 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~--------------------~~~ 408 (491)
+.|+..++.+..+|+. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.
T Consensus 208 ~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~ 282 (459)
T 2z83_A 208 MCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPS 282 (459)
T ss_dssp HHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCE
T ss_pred HHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCC
Confidence 9999999999999995 6788999999999999999999999999999 99999 779
Q ss_pred CCChhHHHHhhhhcccCCC-cceEEEEeCcc
Q 011188 409 PGSLEDYVHRIGRTGRAGA-KGTAYTFFTAA 438 (491)
Q Consensus 409 p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~~~ 438 (491)
|.|..+|+||+||+||.|. .|.+++|+++.
T Consensus 283 p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 283 PITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999999997 89999999875
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.9e-38 Score=330.66 Aligned_cols=304 Identities=18% Similarity=0.201 Sum_probs=190.0
Q ss_pred CCcHHHHHHHHHhhc----C-CcEEEEcCCCChHHHHHHHHHHHHhhcCCC--CCCCCCCEEEEEcccHHHHHHHH-HHH
Q 011188 108 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQ-QES 179 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~----~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~~vlil~Pt~~L~~q~~-~~~ 179 (491)
.|+|+|.++++.++. + +++++++|||+|||++++. ++..+..... .....++++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 5699999999999999655 4444443211 11124688999999999999999 777
Q ss_pred HHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc----cCccccCccEEEEccccccccCCcHHHHH
Q 011188 180 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES----HNTNLRRVTYLVLDEADRMLDMGFEPQIK 255 (491)
Q Consensus 180 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~----~~~~l~~~~~lIiDEah~~~~~~~~~~~~ 255 (491)
..++.. +..+.++ ....+.+|+|+||++|...... ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~~----~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGDA----RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCSS----EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcchh----hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 776532 2222222 1234679999999999876542 23345678999999999987643 34566
Q ss_pred HHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEE-----------------ecCCCccc-------------ccce
Q 011188 256 KILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI-----------------IGSPDLKA-------------NHAI 305 (491)
Q Consensus 256 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-------------~~~~ 305 (491)
.++..++ ..++++||||+..........++..+.... ........ ...+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777775 467999999986433222233333322211 00000000 0000
Q ss_pred eeeeeccC-------hhhHHHH----HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCC--------ceEEEcCCCC
Q 011188 306 RQHVDIVS-------ESQKYNK----LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------PALSIHGDKS 366 (491)
Q Consensus 306 ~~~~~~~~-------~~~k~~~----l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~--------~~~~i~~~~~ 366 (491)
........ ...+... +.+.+.......++||||+++.+|+.+++.|++.+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 0112222 333344444557999999999999999999976543 2778899876
Q ss_pred HHHHHHHHHHHhCCCCc---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCC
Q 011188 367 QAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 427 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 427 (491)
. +|..++++|++++.+ |||||+++++|||+|++++||++++|+|+..|+||+||++|.+.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 88899999999999999999999999999999999999999875
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=8.8e-38 Score=313.06 Aligned_cols=269 Identities=17% Similarity=0.169 Sum_probs=191.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChh
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 201 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~ 201 (491)
.++++++++|||||||++|++|++..+.. .+++++|++||++|+.|+.+.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 36899999999999999999999977665 26789999999999999998775 2344433332111
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCCCceEEeccCCcHHHHH
Q 011188 202 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 280 (491)
Q Consensus 202 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~ 280 (491)
....+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... ++..++++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122456778898888776665 455789999999999997 332333333333332 5689999999999863221
Q ss_pred HHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEE
Q 011188 281 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 360 (491)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 360 (491)
+... ..+...... ..+ ..+...+.+.+.+ .++++||||+++++++.+++.|++.++++..
T Consensus 141 ~~~~--~~~i~~~~~---------------~~~-~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPIIDEET---------------RIP-DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCEEEEC---------------CCC-SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCceeeccc---------------cCC-HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1100 011111000 000 0111222333433 2568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCE-----------------EEEcCCCCChhHHHHhhhhcc
Q 011188 361 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY-----------------VINYDFPGSLEDYVHRIGRTG 423 (491)
Q Consensus 361 i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~-----------------VI~~~~p~s~~~~~Qr~GR~g 423 (491)
+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 577899999999999999999999999999 554 578889999999999999999
Q ss_pred cCCC-cceEEEEe
Q 011188 424 RAGA-KGTAYTFF 435 (491)
Q Consensus 424 R~g~-~g~~~~~~ 435 (491)
|.|. .|.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 45555555
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=281.21 Aligned_cols=215 Identities=51% Similarity=0.893 Sum_probs=187.6
Q ss_pred cCCCCCCcCCccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCC-C
Q 011188 78 GRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-A 155 (491)
Q Consensus 78 ~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~-~ 155 (491)
....|.|..+|++ +++++.+++++.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++.++...... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4567899999999 7999999999999999999999999999999999999999999999999999999888653221 1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCcc
Q 011188 156 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 235 (491)
Q Consensus 156 ~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 235 (491)
...++++||++||++|+.|+.+++.++. ..++.+..++|+.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2357889999999999999999999986 457889999999888888888888899999999999999888888889999
Q ss_pred EEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEE
Q 011188 236 YLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 293 (491)
Q Consensus 236 ~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 293 (491)
+||+||||++.+++|...+..++..++++.|++++|||+++.+.+++..++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999988765
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.9e-37 Score=335.08 Aligned_cols=335 Identities=16% Similarity=0.097 Sum_probs=230.4
Q ss_pred CCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 107 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
.+|+|||.+++..++.. .++|++++||+|||++++..+...+... ...++|||||+ .|+.||.+++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999988864 4799999999999999877665554431 24479999999 99999999997654
Q ss_pred CCCceEEEEECCccChhhHH---HhhcCCcEEEeChHHHHHHHhc-cCccccCccEEEEccccccccCCcH--HHHHHHH
Q 011188 185 SSKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFE--PQIKKIL 258 (491)
Q Consensus 185 ~~~~~v~~~~~g~~~~~~~~---~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiDEah~~~~~~~~--~~~~~i~ 258 (491)
++.+..+.++... .... ......+|+|+|++.+...... ..+...++++||+||||++.+.... ..+..+.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 3444444332211 1111 1112468999999988542111 1123457899999999999765421 1122222
Q ss_pred hhcCCCCceEEeccCCcH----HHHHHHHHHccC----------------------------------------------
Q 011188 259 SQIRPDRQTLYWSATWPK----EVEHLARQYLYN---------------------------------------------- 288 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~---------------------------------------------- 288 (491)
.......+++++|||+.. ++..+.......
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 223356679999999732 111111100000
Q ss_pred ----------------------------------CcEEEecCCCcccc--cceee-------------------------
Q 011188 289 ----------------------------------PYKVIIGSPDLKAN--HAIRQ------------------------- 307 (491)
Q Consensus 289 ----------------------------------~~~~~~~~~~~~~~--~~~~~------------------------- 307 (491)
...+.......... .....
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000000000 00000
Q ss_pred --------------------eeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHh-CCCceEEEcCCCC
Q 011188 308 --------------------HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKS 366 (491)
Q Consensus 308 --------------------~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~i~~~~~ 366 (491)
.........|...+.+++.. ..+.++||||+++..++.++..|+. .|+++..+||+++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 00123345678888888887 4567999999999999999999994 5999999999999
Q ss_pred HHHHHHHHHHHhCCC--CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHH
Q 011188 367 QAERDWVLSEFKAGK--SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 444 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 444 (491)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|+.+.++++....+....+
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee 619 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQS 619 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHH
Confidence 999999999999998 999999999999999999999999999999999999999999999999777776555444455
Q ss_pred HHHHHHHHh
Q 011188 445 ELITILEEA 453 (491)
Q Consensus 445 ~l~~~l~~~ 453 (491)
.+.+.+.+.
T Consensus 620 ~i~~~~~~k 628 (968)
T 3dmq_A 620 VLVRWYHEG 628 (968)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 555555443
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1e-36 Score=284.40 Aligned_cols=225 Identities=43% Similarity=0.730 Sum_probs=197.3
Q ss_pred ceEecCCCCC--CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcC
Q 011188 74 ITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 151 (491)
Q Consensus 74 ~~~~~~~~p~--~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~ 151 (491)
+.+.+...|. ++.+|+++++++.+++++...||..|+|+|.++++.+++++++++++|||+|||++|++|++.++...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 3455666666 88999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCC----CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc
Q 011188 152 PFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH 227 (491)
Q Consensus 152 ~~~----~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~ 227 (491)
... ....++++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 211 1223578999999999999999999999888889999999999888888888888999999999999999888
Q ss_pred CccccCccEEEEccccccccCCcHHHHHHHHhhc--CC--CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCC
Q 011188 228 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 298 (491)
Q Consensus 228 ~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
...+.++++||+||||++.+++|...+..++..+ +. ..|++++|||+++.+.++++.++.+|..+.+....
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 7788999999999999999999999999999854 33 67999999999999999999999999988876654
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.8e-36 Score=309.76 Aligned_cols=328 Identities=17% Similarity=0.214 Sum_probs=224.4
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 107 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.+|+|||.++++++. .++++|++++||+|||++++. ++..+... ....++|||||+ .|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 379999999998874 578899999999999998655 44444432 124579999995 6899999999999
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 262 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~ 262 (491)
... +++..+.++... ......+|+|+||+.+.+... .....+++||+||||++.+.. ......+..+
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l- 175 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL- 175 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-
Confidence 764 455555554422 112357999999999865432 223468999999999998754 2334455555
Q ss_pred CCCceEEeccCCcH----HHHHHHHHH--------------------------------ccCCcEEEecCCCc----ccc
Q 011188 263 PDRQTLYWSATWPK----EVEHLARQY--------------------------------LYNPYKVIIGSPDL----KAN 302 (491)
Q Consensus 263 ~~~~~i~~SAT~~~----~~~~~~~~~--------------------------------~~~~~~~~~~~~~~----~~~ 302 (491)
+..+.+++|||+.. ++..+.... +..++.+.....+. ..+
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSC
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCC
Confidence 35678999999832 111111111 11222221111100 000
Q ss_pred cceeeeee--------------------------------------------------------ccChhhHHHHHHHHHH
Q 011188 303 HAIRQHVD--------------------------------------------------------IVSESQKYNKLVKLLE 326 (491)
Q Consensus 303 ~~~~~~~~--------------------------------------------------------~~~~~~k~~~l~~~l~ 326 (491)
......+. ......|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 00000000 0112356666777777
Q ss_pred hhc-cCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhCC-CCc-EEEEeccccccCCCCCCCE
Q 011188 327 DIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 327 ~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~i~~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~Gidi~~~~~ 402 (491)
+.. .+.++||||++...++.++..|... ++.+..+||+++..+|..+++.|+++ ..+ +|++|+++++|+|+|.+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 653 5669999999999999999999875 89999999999999999999999988 555 7899999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhC
Q 011188 403 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 454 (491)
Q Consensus 403 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 454 (491)
||++|+|||+..|.||+||++|.|+...++++..-.....-+.+.+.+.++.
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~ 467 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 467 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCS
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999877654433222233344555554433
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3e-36 Score=278.20 Aligned_cols=213 Identities=31% Similarity=0.504 Sum_probs=179.5
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC
Q 011188 78 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 157 (491)
Q Consensus 78 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 157 (491)
..+.|.+..+|+++++++.+++.+...||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567778999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcC-CcEEEeChHHHHHHHhccCccccCccE
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTY 236 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 236 (491)
.++++||++|+++|+.|+.+.+++++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 3678999999999999999999999888888899999988776666666555 899999999999999887777889999
Q ss_pred EEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEec
Q 011188 237 LVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 295 (491)
Q Consensus 237 lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
||+||||++.+++|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+.
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999988876543
No 58
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=279.17 Aligned_cols=230 Identities=33% Similarity=0.564 Sum_probs=197.7
Q ss_pred HHHHHHhhcCceEecCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHH
Q 011188 64 EVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~ 139 (491)
++..+++...+.+.+.+.|.|+.+|+++ ++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH-HHhhcCCcEEEeChH
Q 011188 140 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPG 218 (491)
Q Consensus 140 ~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~-~~~~~~~~Iiv~T~~ 218 (491)
|++|++..+... ...++++||++||++|+.|+.+.+.++....++.+..++++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988652 234678999999999999999999999888888887776654322221 222456899999999
Q ss_pred HHHHHHhcc--CccccCccEEEEcccccccc---CCcHHHHHHHHhhc-CCCCceEEeccCCcHHHHHHHHHHccCCcEE
Q 011188 219 RLIDMLESH--NTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKV 292 (491)
Q Consensus 219 ~l~~~l~~~--~~~l~~~~~lIiDEah~~~~---~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 292 (491)
+|.+++... ...+.++++||+||||++.+ .+|...+..++..+ ++..|+++||||+++++.++++.++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999998875 46788999999999999988 56888888887765 4578999999999999999999999999998
Q ss_pred EecCC
Q 011188 293 IIGSP 297 (491)
Q Consensus 293 ~~~~~ 297 (491)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 87654
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=277.69 Aligned_cols=207 Identities=46% Similarity=0.712 Sum_probs=189.4
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEE
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 162 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 162 (491)
.+..+|+++++++.+.+.+...|+..|+++|.++++.+++++++++++|||+|||++|++|++..+...+ .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 3467899999999999999999999999999999999999999999999999999999999998887632 36789
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccccCccEEEEcc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 241 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiDE 241 (491)
||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+.+.. ....+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988888999999999887777777778899999999999998876 456688999999999
Q ss_pred ccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEe
Q 011188 242 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 294 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 294 (491)
||++.+++|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999989999999999999999999999999987754
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-35 Score=266.96 Aligned_cols=202 Identities=33% Similarity=0.576 Sum_probs=184.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
.+|+++++++.+++.+...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999887542 246789999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 166 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
+|+++|+.|+.+.+.++.... ++.+..++|+.........+..+++|+|+||++|.+.+......+.+++++|+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999988766 7888899998887777777777899999999999999988777888999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEE
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 292 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 292 (491)
+.+.+|...+..++..+++..|++++|||+++.+.++++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998899999999999999999999999888754
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1e-35 Score=273.41 Aligned_cols=210 Identities=31% Similarity=0.486 Sum_probs=181.9
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC
Q 011188 78 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 157 (491)
Q Consensus 78 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 157 (491)
++..|.+..+|+++++++.+.+.+...||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567778899999999999999999999999999999999999999999999999999999999999887642 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccE
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 236 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 236 (491)
.++++||++|+++|+.|+.+.+++++... ++++..++|+.....+...+ .+++|+|+||++|.+++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 36789999999999999999999987654 78888888887765554444 46899999999999998887778889999
Q ss_pred EEEccccccccCC-cHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEE
Q 011188 237 LVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 293 (491)
Q Consensus 237 lIiDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 293 (491)
+|+||||++.+++ |...+..++..+++..|++++|||+++.+.+++..++.+|..+.
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999987 99999999999998999999999999999999999988887664
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5e-36 Score=273.51 Aligned_cols=207 Identities=35% Similarity=0.581 Sum_probs=185.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
..+|+++++++.+.+.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999887642 23678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC----CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 165 LAPTRELAVQIQQESTKFGASS----KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~----~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
++||++|+.|+.+.+.++.... ++.+..++|+.........+..+++|+|+||++|.+.+......+.+++++|+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 9999999999999999987765 678888888876655555555678999999999999998877788899999999
Q ss_pred cccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecC
Q 011188 241 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 296 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
|||++.+++|...+..++..+++..|++++|||+++++.++++.++.+|..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999998999999999999999999999999998876544
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.8e-35 Score=270.84 Aligned_cols=212 Identities=30% Similarity=0.529 Sum_probs=183.2
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCC
Q 011188 79 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 158 (491)
Q Consensus 79 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 158 (491)
...++++.+|+++++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3567778899999999999999999999999999999999999999999999999999999999999887542 24
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 238 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lI 238 (491)
++++||++|+++|+.|+.+.+.++....++.+..++|+.........+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988888999999998876655555444 89999999999999888777888999999
Q ss_pred EccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecC
Q 011188 239 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 296 (491)
Q Consensus 239 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
+||||++.+++|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998776554
No 64
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=9.1e-36 Score=310.01 Aligned_cols=275 Identities=19% Similarity=0.144 Sum_probs=204.5
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCc
Q 011188 118 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 197 (491)
Q Consensus 118 ~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~ 197 (491)
...+++++++++||||||||+. ++..+.. .+..+|++|+++||.|+++.+.+. ++.+..++|+.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~ 213 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEE 213 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCe
Confidence 3456888999999999999984 3344443 223589999999999999999886 46777888875
Q ss_pred cChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC-CCCceEEeccCCcH
Q 011188 198 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSATWPK 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~ 276 (491)
.... ..-....+++++|++.+. ....+++|||||||++.+.+|+..+..++..++ ...+++++|||.+
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 4311 000112578888875441 246789999999999999999999999998887 7789999999953
Q ss_pred HHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCC
Q 011188 277 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 356 (491)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 356 (491)
.+..+.... .....+...... . ......... ..+... ....+|||+++++++.+++.|++.++
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r~--~--~l~~~~~~l----------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKRL--T--PISVLDHAL----------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCCS--S--CEEECSSCC----------CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CCceEEEEeeec--c--hHHHHHHHH----------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 344444433 334333221110 0 010000000 011111 23458899999999999999999999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhC--CCCcEEEEeccccccCCCCCCCEEEEcCC--------------CCChhHHHHhhh
Q 011188 357 PALSIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDF--------------PGSLEDYVHRIG 420 (491)
Q Consensus 357 ~~~~i~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~VI~~~~--------------p~s~~~~~Qr~G 420 (491)
.+..+||+|++++|..+++.|++ |+.+|||||+++++|||+ ++++||+++. |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 99999999999999999999999 889999999999999999 8999999998 789999999999
Q ss_pred hcccCCCc---ceEEEEeCc
Q 011188 421 RTGRAGAK---GTAYTFFTA 437 (491)
Q Consensus 421 R~gR~g~~---g~~~~~~~~ 437 (491)
||||.|.. |.|+.+...
T Consensus 425 RAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp TBTCTTSSCSSEEEEESSTT
T ss_pred CCCCCCCCCCCEEEEEEecc
Confidence 99999965 555554433
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=270.49 Aligned_cols=227 Identities=33% Similarity=0.511 Sum_probs=193.2
Q ss_pred HHHHHHHHhhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHH
Q 011188 62 EREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~ 141 (491)
.++++.+.++... ..+.+..+|+++++++.+.+.+...++..|+++|.++++.+++++++++++|||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 3455555544322 22456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHH
Q 011188 142 LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI 221 (491)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~ 221 (491)
+|++..+..... ....++++||++|+++|+.|+.+.+.+++...++.+..++|+.........+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999988865321 1123678999999999999999999999988889999999988776655554 46899999999999
Q ss_pred HHHhcc-CccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEec
Q 011188 222 DMLESH-NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 295 (491)
Q Consensus 222 ~~l~~~-~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
+.+... ...+.++++||+||||++.+++|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 887764 46678999999999999999999999999999999999999999999999999999999999877654
No 66
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=280.05 Aligned_cols=214 Identities=29% Similarity=0.433 Sum_probs=185.8
Q ss_pred ceEecCCCCC---CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 74 ITVEGRDVPK---PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 74 ~~~~~~~~p~---~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+.+...+.+. +..+|+++++++.+++.+..+||..|+++|.++|+.++.+ +++++++|||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3344444444 3678999999999999999999999999999999999997 8999999999999999999999987
Q ss_pred hcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-
Q 011188 149 NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES- 226 (491)
Q Consensus 149 ~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~- 226 (491)
... ..++++|||+||++||.|+.+.+.+++... ++.+...+++....... ..+++|+|+||++|.+++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 653 346789999999999999999999988654 67888888877654332 45679999999999999866
Q ss_pred cCccccCccEEEEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEec
Q 011188 227 HNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 295 (491)
Q Consensus 227 ~~~~l~~~~~lIiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
....+.++++|||||||++.+ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 456788999999999999998 689999999999999999999999999999999999999999888764
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.6e-35 Score=263.79 Aligned_cols=204 Identities=43% Similarity=0.699 Sum_probs=185.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
+|+++++++.+.+.+.+.++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998876532 123467899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
|+++|+.|+.+.+.++... +++..++|+.....+...+..+++|+|+||+++.+.+......+.+++++|+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998765 67888899888877777777889999999999999988877788999999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEe
Q 011188 247 DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 294 (491)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 294 (491)
+.+|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999987654
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.2e-34 Score=288.48 Aligned_cols=330 Identities=20% Similarity=0.222 Sum_probs=244.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|..+.-.+.+|+ |+.+.||+|||+++.+|++...+. |..|.||+|++.||.|-++++..+...++
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 78888888888777765 899999999999999999877665 66799999999999999999999999999
Q ss_pred ceEEEEECCc------------------------------------------------cChhhHHHhhcCCcEEEeChHH
Q 011188 188 IKSTCIYGGV------------------------------------------------PKGPQVRDLQKGVEIVIATPGR 219 (491)
Q Consensus 188 ~~v~~~~~g~------------------------------------------------~~~~~~~~~~~~~~Iiv~T~~~ 219 (491)
+++.+++... ......+.-...|||+++|...
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~E 224 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNE 224 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcc
Confidence 9999998721 1111222333458999999988
Q ss_pred H-HHHHhcc------CccccCccEEEEccccccccC-------------C---cHHHHHHH-------------------
Q 011188 220 L-IDMLESH------NTNLRRVTYLVLDEADRMLDM-------------G---FEPQIKKI------------------- 257 (491)
Q Consensus 220 l-~~~l~~~------~~~l~~~~~lIiDEah~~~~~-------------~---~~~~~~~i------------------- 257 (491)
| .++|... ......+.+.||||+|.++=. . ....+..+
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v 304 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTI 304 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCE
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeE
Confidence 6 3444432 223467899999999974400 0 00000000
Q ss_pred ----------------------------------Hhh---cC--------------------------------------
Q 011188 258 ----------------------------------LSQ---IR-------------------------------------- 262 (491)
Q Consensus 258 ----------------------------------~~~---~~-------------------------------------- 262 (491)
++. +.
T Consensus 305 ~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 384 (822)
T 3jux_A 305 ILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEA 384 (822)
T ss_dssp EECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHH
T ss_pred EECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHH
Confidence 000 00
Q ss_pred -----------------------CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCccccccee-eeeeccChhhHH
Q 011188 263 -----------------------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIR-QHVDIVSESQKY 318 (491)
Q Consensus 263 -----------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ 318 (491)
.-.++.+||+|...+..++.+.|..+ .+.+... ....... +.........|.
T Consensus 385 KEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn--kp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 385 KEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH--KPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS--SCCCCEECCCEEESSHHHHH
T ss_pred HcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC--CCcceeecCcEEEecHHHHH
Confidence 01378899999988777777766543 2333222 1122222 234456778899
Q ss_pred HHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCC
Q 011188 319 NKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 397 (491)
Q Consensus 319 ~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 397 (491)
..+.+.+... ..+.++||||+|++.++.++..|++.|+++..+||+..+.++..+...++.| .|+|||+++++|+||
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 9999988875 3567999999999999999999999999999999997666666666667666 599999999999999
Q ss_pred C--------CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHH----HHHHHHHHHHh
Q 011188 398 K--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF----AKELITILEEA 453 (491)
Q Consensus 398 ~--------~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~----~~~l~~~l~~~ 453 (491)
+ +..+||+++.|.|...|+||+||+||.|.+|.++.|++..|.-+ ...+..++...
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~ 606 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNIL 606 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHS
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHc
Confidence 8 56799999999999999999999999999999999999887433 23444444443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=308.33 Aligned_cols=397 Identities=15% Similarity=0.221 Sum_probs=261.2
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHhhcCceEe---cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHH
Q 011188 38 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVE---GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQA 114 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~ 114 (491)
.+|..+ +++...+.....+.....+.++.|........- ....+.....|..+...+... .-.+|+|||.
T Consensus 170 vKW~~L-~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~ 242 (800)
T 3mwy_W 170 VKWRRL-NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQL 242 (800)
T ss_dssp EEETTS-CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHH
T ss_pred EEecCC-CcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHH
Confidence 445555 455556666556666677888888765332111 111122223344443322221 1248999999
Q ss_pred HHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 011188 115 QGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 190 (491)
Q Consensus 115 ~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v 190 (491)
+++.+++ .+.+.|++++||+|||++++..+...+... .....+||||| ..|+.||.+++.++.+. +.+
T Consensus 243 egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p~--~~v 314 (800)
T 3mwy_W 243 TGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAPD--LNC 314 (800)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHSTT--CCE
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCCC--ceE
Confidence 9999876 788999999999999998666443332221 12445899999 57889999999999754 566
Q ss_pred EEEECCccChhhHHH------------hhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHH
Q 011188 191 TCIYGGVPKGPQVRD------------LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 258 (491)
Q Consensus 191 ~~~~~g~~~~~~~~~------------~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~ 258 (491)
.+.+|+......... .....+|+|+|++.+...... +....+++||+||||++.+.. ......+
T Consensus 315 ~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l 390 (800)
T 3mwy_W 315 ICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESL 390 (800)
T ss_dssp EECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHH
Confidence 666665543333222 123478999999998764332 112368899999999997643 3444555
Q ss_pred hhcCCCCceEEeccCC----cHHHHHHHHHHccC-----------------------------CcEEEecCCCcc--ccc
Q 011188 259 SQIRPDRQTLYWSATW----PKEVEHLARQYLYN-----------------------------PYKVIIGSPDLK--ANH 303 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT~----~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~ 303 (491)
..+ .....+++|||+ ..++..+...+... |+.+........ .+.
T Consensus 391 ~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~ 469 (800)
T 3mwy_W 391 NSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPS 469 (800)
T ss_dssp TTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCC
T ss_pred HHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCC
Confidence 555 345679999997 22233333222111 111110000000 000
Q ss_pred ceeeeee-------------------------------------------------------------------------
Q 011188 304 AIRQHVD------------------------------------------------------------------------- 310 (491)
Q Consensus 304 ~~~~~~~------------------------------------------------------------------------- 310 (491)
.....+.
T Consensus 470 k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~ 549 (800)
T 3mwy_W 470 KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLR 549 (800)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHH
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHH
Confidence 0000000
Q ss_pred -ccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCc---EE
Q 011188 311 -IVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP---IM 385 (491)
Q Consensus 311 -~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~---vL 385 (491)
......|...|.+++..+. .+.++||||+....++.|...|...++++..+||+++..+|..+++.|+++... +|
T Consensus 550 ~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~L 629 (800)
T 3mwy_W 550 GLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629 (800)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEE
T ss_pred HhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEE
Confidence 0012456777778887764 356999999999999999999999999999999999999999999999986554 89
Q ss_pred EEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhC
Q 011188 386 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 454 (491)
Q Consensus 386 vaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 454 (491)
++|.++++|||++.+++||+||+|||+..+.|++||++|.|+...+.++..-.....-..+.+.+.++.
T Consensus 630 lSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 630 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp EEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred EecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876655433333333444555554443
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=271.74 Aligned_cols=205 Identities=38% Similarity=0.586 Sum_probs=180.6
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 86 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 86 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
.+|++++ +++.+++.+...||.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566666 99999999999999999999999999999999999999999999999999999988763221 12367899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-CccccCccEEEEccc
Q 011188 164 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 242 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lIiDEa 242 (491)
|++||++|+.|+.+.+++++...+..+..++|+.........+..+++|+|+||+++.+++... ...+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988889999999998887777777788999999999999887764 366889999999999
Q ss_pred cccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcE
Q 011188 243 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYK 291 (491)
Q Consensus 243 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 291 (491)
|++.+++|...+..++..+++.+|+++||||+++.+.++++.++..+..
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999988876543
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-33 Score=294.94 Aligned_cols=323 Identities=18% Similarity=0.196 Sum_probs=221.1
Q ss_pred CCcHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 178 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~---------~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 178 (491)
.|+|||.+++.++. .+.+.|+.++||+|||++++..+...+...+ .......++|||||+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-DCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-TSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-cccCCCCcEEEEecH-HHHHHHHHH
Confidence 79999999999874 3457999999999999987665544443322 112234569999997 899999999
Q ss_pred HHHhcCCCCceEEEEECCccChh--hHHHhh------cCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc
Q 011188 179 STKFGASSKIKSTCIYGGVPKGP--QVRDLQ------KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 250 (491)
Q Consensus 179 ~~~~~~~~~~~v~~~~~g~~~~~--~~~~~~------~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~ 250 (491)
+.++... .+.+..++++..... ...... ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998754 455666666543221 111111 136899999999876532 2334578999999999998654
Q ss_pred HHHHHHHHhhcCCCCceEEeccCCcHHH----H---------------HHHHHHc-------------------------
Q 011188 251 EPQIKKILSQIRPDRQTLYWSATWPKEV----E---------------HLARQYL------------------------- 286 (491)
Q Consensus 251 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~----~---------------~~~~~~~------------------------- 286 (491)
. .....+..+ .....+++|||+-... . .+.+.+.
T Consensus 209 ~-~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 N-QTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp H-HHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2 233344444 3567899999962210 0 0000000
Q ss_pred ----cCCcEEEecCCCcc--cccceeeeee--------------------------------------------------
Q 011188 287 ----YNPYKVIIGSPDLK--ANHAIRQHVD-------------------------------------------------- 310 (491)
Q Consensus 287 ----~~~~~~~~~~~~~~--~~~~~~~~~~-------------------------------------------------- 310 (491)
..|+.+.-...... .+....+.+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00000000000000 0000000000
Q ss_pred ---------------------------ccChhhHHHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhCCCceEEE
Q 011188 311 ---------------------------IVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSI 361 (491)
Q Consensus 311 ---------------------------~~~~~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i 361 (491)
......|...+..++.... .+.++||||++...++.++..|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0012345556666666543 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCc---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEE--EeC
Q 011188 362 HGDKSQAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFT 436 (491)
Q Consensus 362 ~~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~--~~~ 436 (491)
||+++..+|..++++|++++.. +|++|+++++|+|++.+++||++|+|||+..+.|++||++|.|+...+++ |++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 9999999999999999998764 88999999999999999999999999999999999999999998875544 444
Q ss_pred cc
Q 011188 437 AA 438 (491)
Q Consensus 437 ~~ 438 (491)
..
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-34 Score=263.31 Aligned_cols=207 Identities=28% Similarity=0.524 Sum_probs=180.8
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCE
Q 011188 82 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 161 (491)
Q Consensus 82 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 161 (491)
+....+|+++++++.+.+.+...++..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 3345679999999999999999999999999999999999999999999999999999999999886542 23568
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEE
Q 011188 162 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 239 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIi 239 (491)
+||++|+++|+.|+.+.++++.... ++++..++|+.....+...+.. .++|+|+||+++.+++......+.+++++|+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999998765 7889999998876666655554 4699999999999998887778899999999
Q ss_pred cccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEE
Q 011188 240 DEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 293 (491)
Q Consensus 240 DEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 293 (491)
||||++.+ .+|...+..++..+++..|++++|||+++.+.++++.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 4688889999999988999999999999999999999999887654
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.1e-32 Score=298.52 Aligned_cols=312 Identities=14% Similarity=0.123 Sum_probs=212.8
Q ss_pred CCCcHHHHHHHHHhhc--------------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 107 FEPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~--------------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
..|+|+|.+|++.++. +++.+++++||||||+++ ++++..+... ....++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999998875 367999999999999997 5566544431 2346899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccC--ccccCccEEEEccccccccCC
Q 011188 173 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMG 249 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lIiDEah~~~~~~ 249 (491)
.|+.+.+..+.... +.++.+.......+. .+.+|+|+||++|...+.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 99999999987531 223444444444553 468999999999988776432 2356788999999999763
Q ss_pred cHHHHHHHHhhcCCCCceEEeccCCcHHH--------H-------------HHHHHHccCCcEEEecCCCccc-------
Q 011188 250 FEPQIKKILSQIRPDRQTLYWSATWPKEV--------E-------------HLARQYLYNPYKVIIGSPDLKA------- 301 (491)
Q Consensus 250 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~------- 301 (491)
...+..+...++ +.++++||||+.... . +....-...|+.+.........
T Consensus 416 -~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 416 -GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp -HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred -hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 344566666664 578999999986421 1 1111111223322211100000
Q ss_pred c----cceeeeeeccChhhHHHHHHH-HHHhhc----------cCCeEEEEeCCcccHHHHHHHHHhCC-----------
Q 011188 302 N----HAIRQHVDIVSESQKYNKLVK-LLEDIM----------DGSRILIFMDTKKGCDQITRQLRMDG----------- 355 (491)
Q Consensus 302 ~----~~~~~~~~~~~~~~k~~~l~~-~l~~~~----------~~~~~lVf~~~~~~~~~l~~~L~~~~----------- 355 (491)
. ..+.+. .......+...+.. ++.... .+.++||||+++..|..+++.|.+.+
T Consensus 494 d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 000000 01123334444443 223211 23589999999999999999997643
Q ss_pred -CceE-EEcCC----------C----------CH-----------------------------HHHHHHHHHHhCCCCcE
Q 011188 356 -WPAL-SIHGD----------K----------SQ-----------------------------AERDWVLSEFKAGKSPI 384 (491)
Q Consensus 356 -~~~~-~i~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~v 384 (491)
+++. .+|++ + ++ .+|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 4554 45542 2 22 14788999999999999
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCc----ceEEEEeC
Q 011188 385 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----GTAYTFFT 436 (491)
Q Consensus 385 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----g~~~~~~~ 436 (491)
||+|+++.+|+|+|.+ +++++|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 678899999999999999999998753 55665554
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.2e-29 Score=259.31 Aligned_cols=318 Identities=20% Similarity=0.238 Sum_probs=237.7
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++..... +..++||+||++||.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 688 99999999999999998 999999999999999999765553 5579999999999999999999999
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhccC------cccc---CccEEEEccccccc-cCCc--
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLR---RVTYLVLDEADRML-DMGF-- 250 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~---~~~~lIiDEah~~~-~~~~-- 250 (491)
..+++++.+++||.+. +.+....+++|+|+||++| .+++.... ..++ .+.++|+||+|.|+ +.+.
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 9999999999998764 3444456799999999999 78887652 4567 89999999999876 2110
Q ss_pred -------------HHHHHHHHhhcCC------------------------------------------------------
Q 011188 251 -------------EPQIKKILSQIRP------------------------------------------------------ 263 (491)
Q Consensus 251 -------------~~~~~~i~~~~~~------------------------------------------------------ 263 (491)
...+..++..++.
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 1122222222211
Q ss_pred ---------------------------------------------------------------------------CCceE
Q 011188 264 ---------------------------------------------------------------------------DRQTL 268 (491)
Q Consensus 264 ---------------------------------------------------------------------------~~~~i 268 (491)
-.++.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 02556
Q ss_pred EeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHH
Q 011188 269 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQI 347 (491)
Q Consensus 269 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l 347 (491)
+||+|...+..++...|..+. +.+.... .....-.....+.....|...+.+-+.+. ..+.||||+|.|.+..+.|
T Consensus 383 GMTGTA~tE~~Ef~~iY~l~V--v~IPTn~-p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEIYGMDV--VVVPTNR-PVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEESSCGGGHHHHHHHHCCCE--EECCCSS-CCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred ecCCCchHHHHHHHHHhCCCE--EEcCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 777777766666666665442 2222211 11111222333456778888888766654 4677999999999999999
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 011188 348 TRQLR--------------------------------------------------------------------------- 352 (491)
Q Consensus 348 ~~~L~--------------------------------------------------------------------------- 352 (491)
+..|+
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hCCCceEEEcCCCCHHHHHHHHHHHhCCC-CcEEEEeccccccCCCCCC-------------------C----------
Q 011188 353 -MDGWPALSIHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKDV-------------------K---------- 401 (491)
Q Consensus 353 -~~~~~~~~i~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~~-------------------~---------- 401 (491)
+.+++..++++.....+-+.+-+ .|. -.|-|||++++||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EAeIIAq---AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREAEIVAQ---AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHHHHHHT---TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHHHHHHh---cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 56778888887755444333333 333 3599999999999998521 1
Q ss_pred ---------------------------------------------EEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 402 ---------------------------------------------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 402 ---------------------------------------------~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
+||-...+.|...-.|-.||+||.|.+|.+..|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 89999999999999999999999999999988888
Q ss_pred cccH
Q 011188 437 AANA 440 (491)
Q Consensus 437 ~~~~ 440 (491)
-.|.
T Consensus 697 LeDd 700 (997)
T 2ipc_A 697 FDDD 700 (997)
T ss_dssp SSSH
T ss_pred CChH
Confidence 7654
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=229.56 Aligned_cols=181 Identities=37% Similarity=0.549 Sum_probs=150.5
Q ss_pred HHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 011188 283 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 362 (491)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~ 362 (491)
..++.+|..+.+.... .....+.|.+..++...|...|.+++... +.++||||+++..++.+++.|+..++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3466778777776655 45667888888889999999999988763 45899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc-cHH
Q 011188 363 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NAR 441 (491)
Q Consensus 363 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~ 441 (491)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 788
Q ss_pred HHHHHHHHHHHhCCCCCHHHHhhcc
Q 011188 442 FAKELITILEEAGQKVSPELAAMGR 466 (491)
Q Consensus 442 ~~~~l~~~l~~~~~~~~~~l~~~~~ 466 (491)
.+..+.+.++..++++|++|.++++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHccCcCCHHHHhhcC
Confidence 9999999999999999999998875
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=226.81 Aligned_cols=168 Identities=46% Similarity=0.707 Sum_probs=144.7
Q ss_pred ccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhC
Q 011188 300 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 379 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~ 379 (491)
.....+.|.+..++...|...|.+++....++.++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567889998899999999999999987667799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCH
Q 011188 380 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 459 (491)
Q Consensus 380 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 459 (491)
|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+++|+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC
Q 011188 460 ELAAMGRG 467 (491)
Q Consensus 460 ~l~~~~~~ 467 (491)
+|.+++..
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99999875
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.6e-28 Score=257.61 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=134.0
Q ss_pred CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCc
Q 011188 263 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 341 (491)
Q Consensus 263 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~ 341 (491)
...|++++|||++...... ........+...... ...+...+...+...+...+... ..+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-----~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL-----DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC-----CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC-----CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3578999999997643221 111111111111100 01112223334455555555543 3567999999999
Q ss_pred ccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC-----CCChhHHH
Q 011188 342 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 416 (491)
Q Consensus 342 ~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~-----p~s~~~~~ 416 (491)
..++.+++.|...++++..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.|..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HhhhhcccCCCcceEEEEeCcccHHHHHHHHH
Q 011188 417 HRIGRTGRAGAKGTAYTFFTAANARFAKELIT 448 (491)
Q Consensus 417 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 448 (491)
||+||+||.+ .|.+++|+++.+..+...+.+
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999994 899999999877655554443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.6e-27 Score=249.85 Aligned_cols=175 Identities=20% Similarity=0.236 Sum_probs=134.6
Q ss_pred CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCc
Q 011188 263 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 341 (491)
Q Consensus 263 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~ 341 (491)
...|++++|||++...... ........+....... . .+...+...+...+...+... ..+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~--p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLD--P---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCC--C---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCC--C---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3678999999997643222 1111222111111111 1 112222334455555555544 3567999999999
Q ss_pred ccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC-----CCChhHHH
Q 011188 342 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 416 (491)
Q Consensus 342 ~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~-----p~s~~~~~ 416 (491)
..++.+++.|+..++++..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 417 HRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 417 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
||+||+||. ..|.+++|+++.+..+...+.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 789999999987765554443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.5e-27 Score=206.26 Aligned_cols=150 Identities=41% Similarity=0.611 Sum_probs=140.4
Q ss_pred cccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC
Q 011188 301 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 380 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g 380 (491)
....+.+.+..++...|...|.+++... .+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456888888889999999999999875 446899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHH
Q 011188 381 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 451 (491)
Q Consensus 381 ~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 451 (491)
+.+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999888887663
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-27 Score=208.34 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=142.5
Q ss_pred cceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCC
Q 011188 303 HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 382 (491)
Q Consensus 303 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~ 382 (491)
..+.|.+..++...|...|.++++.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45778888888899999999999876 44689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc-cHHHHHHHHHHHHHhCCCCCHHH
Q 011188 383 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 461 (491)
Q Consensus 383 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 461 (491)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++. +...+..+.+.+.....++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999876 56778888888777777777765
Q ss_pred Hh
Q 011188 462 AA 463 (491)
Q Consensus 462 ~~ 463 (491)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 43
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=5.7e-28 Score=209.51 Aligned_cols=159 Identities=37% Similarity=0.628 Sum_probs=139.3
Q ss_pred ceeeeeeccChhh-HHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCC
Q 011188 304 AIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 382 (491)
Q Consensus 304 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~ 382 (491)
.+.|.+..++... |...|.++++.. ...++||||++++.++.++..|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4566666666666 999999999876 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHH
Q 011188 383 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 462 (491)
Q Consensus 383 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 462 (491)
+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+++|..+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777777776544
Q ss_pred h
Q 011188 463 A 463 (491)
Q Consensus 463 ~ 463 (491)
+
T Consensus 162 ~ 162 (165)
T 1fuk_A 162 T 162 (165)
T ss_dssp T
T ss_pred h
Confidence 3
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.9e-27 Score=204.75 Aligned_cols=152 Identities=30% Similarity=0.525 Sum_probs=134.0
Q ss_pred ccceeeeeeccChhh-HHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC
Q 011188 302 NHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 380 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g 380 (491)
...+.|.+..++... |...|.+++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 346777777777655 999999988875 456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCC------CChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhC
Q 011188 381 KSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 454 (491)
Q Consensus 381 ~~~vLvaT~~~~~Gidi~~~~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 454 (491)
+.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+...-
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999888888777765443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.5e-26 Score=205.61 Aligned_cols=147 Identities=35% Similarity=0.531 Sum_probs=133.0
Q ss_pred eeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q 011188 306 RQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 385 (491)
Q Consensus 306 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vL 385 (491)
.+....++...|...|.+++.... ++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 344455677889999999998654 5689999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHh
Q 011188 386 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 453 (491)
Q Consensus 386 vaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 453 (491)
|||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|++|+++.+......+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988888887776543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.6e-25 Score=211.33 Aligned_cols=147 Identities=34% Similarity=0.529 Sum_probs=130.5
Q ss_pred eeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcE
Q 011188 305 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 384 (491)
Q Consensus 305 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~v 384 (491)
+.+.+..+....|...|.+++.... +.++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566667788899999999998765 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 385 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 385 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999987777776665543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.4e-25 Score=202.17 Aligned_cols=166 Identities=23% Similarity=0.222 Sum_probs=122.6
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH-HHHHHHHhc
Q 011188 105 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKFG 183 (491)
Q Consensus 105 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q-~~~~~~~~~ 183 (491)
...+|+++|.++++.+++++++++.+|||+|||++++++++..+..... ...+.++||++|+++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4458999999999999999999999999999999999988877654210 1235679999999999999 888888887
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC------ccccCccEEEEccccccccCCcHHHH-HH
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN------TNLRRVTYLVLDEADRMLDMGFEPQI-KK 256 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~------~~l~~~~~lIiDEah~~~~~~~~~~~-~~ 256 (491)
.. ++.+..++|+.........+..+++|+|+||++|.+.+.... ..+.++++||+||||++.+.++...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 678888888877666666666678999999999998887643 55788999999999999876544443 23
Q ss_pred HHhhc-------------CCCCceEEeccC
Q 011188 257 ILSQI-------------RPDRQTLYWSAT 273 (491)
Q Consensus 257 i~~~~-------------~~~~~~i~~SAT 273 (491)
++... .+.+++++||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 167899999998
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.6e-23 Score=215.30 Aligned_cols=301 Identities=18% Similarity=0.245 Sum_probs=168.6
Q ss_pred CCCCCCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 104 AGFFEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~----i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
.+| +|+|+|.+++.. +..++++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 355 899999998754 4578999999999999999999998764 578999999999999999998
Q ss_pred HHhcCCCCceEEEEECCcc--------Ch------------------------hhH---------------HHhhcCCcE
Q 011188 180 TKFGASSKIKSTCIYGGVP--------KG------------------------PQV---------------RDLQKGVEI 212 (491)
Q Consensus 180 ~~~~~~~~~~v~~~~~g~~--------~~------------------------~~~---------------~~~~~~~~I 212 (491)
.++. +++..+.|... .. ..+ +.....++|
T Consensus 72 ~~l~----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLLG----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGGT----CCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred HhcC----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 8752 33333332210 00 000 111345799
Q ss_pred EEeChHHHHHHHhccCc-------cccCccEEEEccccccccCC-------cHHHHHH----H-----------------
Q 011188 213 VIATPGRLIDMLESHNT-------NLRRVTYLVLDEADRMLDMG-------FEPQIKK----I----------------- 257 (491)
Q Consensus 213 iv~T~~~l~~~l~~~~~-------~l~~~~~lIiDEah~~~~~~-------~~~~~~~----i----------------- 257 (491)
+|+|+..|++....... .+.+..++||||||++.+.. ....+.. +
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 227 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDY 227 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 99999999875433221 24577899999999874310 0000000 0
Q ss_pred -------Hhhc-C----------------------------------------------------------------CC-
Q 011188 258 -------LSQI-R----------------------------------------------------------------PD- 264 (491)
Q Consensus 258 -------~~~~-~----------------------------------------------------------------~~- 264 (491)
+... + |.
T Consensus 228 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~ 307 (540)
T 2vl7_A 228 INLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSD 307 (540)
T ss_dssp HHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSC
T ss_pred HHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHH
Confidence 0000 0 00
Q ss_pred --------Cc----eEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee--ccCh--hh---HHHHHHHHH
Q 011188 265 --------RQ----TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD--IVSE--SQ---KYNKLVKLL 325 (491)
Q Consensus 265 --------~~----~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~---k~~~l~~~l 325 (491)
.. +|++|||+.+.. . +...+...+... . ...+.+. .++. .. ....+.+.+
T Consensus 308 ~~~~l~~~~~~~~~~IltSATL~p~~-~-----~~~~f~~~~~~~-~----g~~~~~~~~~l~s~f~~r~~~~~~~~~~l 376 (540)
T 2vl7_A 308 VNQLIEDALNVKTFKVLMSGTLPESL-T-----LTNSYKIVVNES-Y----GRGEYYYCPNVTSELRKRNSNIPIYSILL 376 (540)
T ss_dssp HHHHHHHHTCCSSCEEEEESSCCTTC-C-----CTTEEEEECCCC------CCCEEEECTTCCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCeEEEcccCCCCc-c-----cchhcCCchhhe-e----cCCcceeccccCCCcccccCHHHHHHHHH
Confidence 01 255566654310 0 000000000000 0 0000000 0111 11 113444444
Q ss_pred Hhhc--cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEE--EeccccccCCCCC--
Q 011188 326 EDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT--ATDVAARGLDVKD-- 399 (491)
Q Consensus 326 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLv--aT~~~~~Gidi~~-- 399 (491)
..+. ..+++|||++|...++.+++.|+. .+ ..+++.. .+|..+++.|+.+. .||+ +|..+++|||+|+
T Consensus 377 ~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~ 450 (540)
T 2vl7_A 377 KRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKE 450 (540)
T ss_dssp HHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCc
Confidence 4432 345899999999999999998865 23 4556654 46788999999864 6777 7899999999997
Q ss_pred --CCEEEEcCCCCC-h-----------------------------hHHHHhhhhcccCCCcceEEEEeCc
Q 011188 400 --VKYVINYDFPGS-L-----------------------------EDYVHRIGRTGRAGAKGTAYTFFTA 437 (491)
Q Consensus 400 --~~~VI~~~~p~s-~-----------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 437 (491)
+++||++++|.. + ..+.|.+||+-|...+--+++++++
T Consensus 451 ~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 451 NLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp -CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred ccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 889999998851 1 3456999999998655445555554
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.1e-26 Score=202.50 Aligned_cols=149 Identities=33% Similarity=0.535 Sum_probs=134.4
Q ss_pred ceeeeeeccCh-hhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCC
Q 011188 304 AIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 382 (491)
Q Consensus 304 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~ 382 (491)
.+.+.+..++. ..|...|.++++.. .+.++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34555656666 77888888888764 44689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHh
Q 011188 383 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 453 (491)
Q Consensus 383 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 453 (491)
+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++++++.+...+..+.+.+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999999999999999999999888888887766443
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=2.4e-24 Score=203.88 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=127.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
.+|+|+|.++++.++.+++.++++|||+|||++++.++...+.. ...++||++|+++|+.||.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 48999999999999988889999999999999998877766544 13479999999999999999999998776
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 266 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~ 266 (491)
...+..++++..... ......+|+|+||+++.+. ....+.++++||+||||++. ...+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCe
Confidence 678888888765532 1224579999999987543 22346789999999999987 4577888888878999
Q ss_pred eEEeccCCcHHHH
Q 011188 267 TLYWSATWPKEVE 279 (491)
Q Consensus 267 ~i~~SAT~~~~~~ 279 (491)
++++|||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999976543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=2.2e-21 Score=200.29 Aligned_cols=309 Identities=17% Similarity=0.140 Sum_probs=199.4
Q ss_pred CCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~----i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+++|+|.+++.. +..++++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 799999998764 4578999999999999999999999972 6789999999999999999999987
Q ss_pred CCCCceEEEEECCccC---------------------------------hhhH------------------HHhhcCCcE
Q 011188 184 ASSKIKSTCIYGGVPK---------------------------------GPQV------------------RDLQKGVEI 212 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~---------------------------------~~~~------------------~~~~~~~~I 212 (491)
...++++..+.|.... .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7777888877764221 0111 223346899
Q ss_pred EEeChHHHHHHHhccCccc-cCccEEEEccccccccCC------------------------------------------
Q 011188 213 VIATPGRLIDMLESHNTNL-RRVTYLVLDEADRMLDMG------------------------------------------ 249 (491)
Q Consensus 213 iv~T~~~l~~~l~~~~~~l-~~~~~lIiDEah~~~~~~------------------------------------------ 249 (491)
||+|+..|++........+ ....++||||||++.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999988754433322 4678999999998765 1
Q ss_pred -------------cHHHHHHH----------------------------H----------------------------hh
Q 011188 250 -------------FEPQIKKI----------------------------L----------------------------SQ 260 (491)
Q Consensus 250 -------------~~~~~~~i----------------------------~----------------------------~~ 260 (491)
+...+..+ + ..
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 0 00
Q ss_pred cCCC-CceEEeccCCcHHHHHHHHHHccC-CcEE-----EecCCCcccccceeeeee-ccCh------hhHHHHHHHHHH
Q 011188 261 IRPD-RQTLYWSATWPKEVEHLARQYLYN-PYKV-----IIGSPDLKANHAIRQHVD-IVSE------SQKYNKLVKLLE 326 (491)
Q Consensus 261 ~~~~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~-~~~~------~~k~~~l~~~l~ 326 (491)
+... ..+|++|||+.+ ...+...+..+ +... .+.++. ..+..-.+. ..+. ..-...+.+.+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf---~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV---SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC---SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC---CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 1123 678999999976 44444444333 2211 011111 111111111 0111 122345555555
Q ss_pred hhc--cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe--ccccccCCCC----
Q 011188 327 DIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAARGLDVK---- 398 (491)
Q Consensus 327 ~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gidi~---- 398 (491)
.+. .++.+|||++|...++.+++. .+.++..-..+++. ...++.|+.....||++| ..+++|||+|
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 432 245899999999999999873 33444333334453 457777854444799998 6999999999
Q ss_pred -CCCEEEEcCCCCC------------------------------hhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 399 -DVKYVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 399 -~~~~VI~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
.+.+||...+|.. .....|.+||+-|...+--++++++..
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3788998876641 112348999999986665555566543
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=184.18 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=131.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 95 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
+.+.+.+.......++++|.++++.+..+++++++||||||||+++.++++..+.... ......+++++|+++|+.|
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHH
Confidence 3344444444455789999999999999999999999999999998888887766532 1224589999999999999
Q ss_pred HHHHHHHhc-CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc-ccCCcH-
Q 011188 175 IQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFE- 251 (491)
Q Consensus 175 ~~~~~~~~~-~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~-~~~~~~- 251 (491)
+.+.+.... ...+..+........ .....+++|+|+||++|.+++.. .+.++++||+||||++ .+.+|.
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 998887543 233333332211110 01123578999999999998876 3789999999999985 666665
Q ss_pred HHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCc
Q 011188 252 PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 290 (491)
Q Consensus 252 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 290 (491)
..++.++... ++.|++++|||++.+. +.+.+...|+
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 3555555554 5789999999998765 6555555544
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=8.7e-20 Score=189.67 Aligned_cols=317 Identities=18% Similarity=0.168 Sum_probs=192.0
Q ss_pred CCCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 107 FEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 107 ~~~~~~Q~~~i~~----i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.+|||.|.+.+.. +.+++++++.||||+|||++|++|++.++.. .+.+++|++||++|+.|+.+++.++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 4789999999864 5578999999999999999999999998865 2578999999999999999999987
Q ss_pred cCCCCceEEEEECCcc--C-hh---------------hH-----------------------------------------
Q 011188 183 GASSKIKSTCIYGGVP--K-GP---------------QV----------------------------------------- 203 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~--~-~~---------------~~----------------------------------------- 203 (491)
.....+++..+.|+.. . .. ..
T Consensus 75 ~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l 154 (620)
T 4a15_A 75 SSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEF 154 (620)
T ss_dssp HHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHH
T ss_pred hhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHH
Confidence 6655666666555321 0 00 00
Q ss_pred ---------------HHhhcCCcEEEeChHHHHHHHhccC----c-cccCccEEEEccccccccC---------------
Q 011188 204 ---------------RDLQKGVEIVIATPGRLIDMLESHN----T-NLRRVTYLVLDEADRMLDM--------------- 248 (491)
Q Consensus 204 ---------------~~~~~~~~Iiv~T~~~l~~~l~~~~----~-~l~~~~~lIiDEah~~~~~--------------- 248 (491)
+.....+||||+++..|++...... . ...+-.++||||||++.+.
T Consensus 155 ~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~ 234 (620)
T 4a15_A 155 YDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLN 234 (620)
T ss_dssp HHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHH
T ss_pred HHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHH
Confidence 0111135899999987655432211 1 1234569999999974410
Q ss_pred -----------Cc-------HHH-------HH-----------------------------------HH-------Hh--
Q 011188 249 -----------GF-------EPQ-------IK-----------------------------------KI-------LS-- 259 (491)
Q Consensus 249 -----------~~-------~~~-------~~-----------------------------------~i-------~~-- 259 (491)
.+ ... +. .+ ..
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 314 (620)
T 4a15_A 235 RADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYV 314 (620)
T ss_dssp HHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred ------h--------------------cC------------------------------CCCceEEeccCCcHHHHHHHH
Q 011188 260 ------Q--------------------IR------------------------------PDRQTLYWSATWPKEVEHLAR 283 (491)
Q Consensus 260 ------~--------------------~~------------------------------~~~~~i~~SAT~~~~~~~~~~ 283 (491)
. .. ....+|++|||+.+ ...+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~ 393 (620)
T 4a15_A 315 ENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSD 393 (620)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHH
T ss_pred HhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHH
Confidence 0 00 01245899999975 445555
Q ss_pred HHccCCcEEEecCCCcccccceeeee-eccC------hhhHHHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhC
Q 011188 284 QYLYNPYKVIIGSPDLKANHAIRQHV-DIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD 354 (491)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~ 354 (491)
.+..+...+.+.++.. ..+....+ ...+ +..-...+.+.+..+. .++.++||++|...++.+++.|+.
T Consensus 394 ~lGl~~~~~~~~spf~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~- 470 (620)
T 4a15_A 394 ITGFEIPFKKIGEIFP--PENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF- 470 (620)
T ss_dssp HHCCCCCEEECCCCSC--GGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS-
T ss_pred HhCCCceeeecCCCCC--HHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh-
Confidence 5444433343333321 11111111 1111 1112233444443322 245799999999999999998872
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe--ccccccCCCCC--CCEEEEcCCCCC-------------------
Q 011188 355 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAARGLDVKD--VKYVINYDFPGS------------------- 411 (491)
Q Consensus 355 ~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gidi~~--~~~VI~~~~p~s------------------- 411 (491)
+... ...+++..++..+++.|+ ++-.||+++ ..+++|||+|+ +.+||...+|..
T Consensus 471 -~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 471 -EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp -CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred -cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2222 444555678999999999 888899998 48999999986 789999888752
Q ss_pred ----------hhHHHHhhhhcccCCCcceEEEEeCc
Q 011188 412 ----------LEDYVHRIGRTGRAGAKGTAYTFFTA 437 (491)
Q Consensus 412 ----------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 437 (491)
.....|.+||+-|...+--++++++.
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11236999999998666555555554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=3.5e-20 Score=169.96 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
.+|+++|.++++.++.++++++++|||+|||++++.++... +.+++|++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999988766542 456999999999999999999985
Q ss_pred Cce-EEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 187 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 187 ~~~-v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
++. +..+.++... ..+|+|+|++.+....... ..++++|||||||++.+..+. .++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhc-cCC
Confidence 466 6666665432 4689999999987655421 245899999999999876643 455555 467
Q ss_pred ceEEeccCCcHH
Q 011188 266 QTLYWSATWPKE 277 (491)
Q Consensus 266 ~~i~~SAT~~~~ 277 (491)
+++++|||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.82 E-value=5.1e-20 Score=171.69 Aligned_cols=127 Identities=19% Similarity=0.268 Sum_probs=100.2
Q ss_pred cChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhCC-CCc-EEEE
Q 011188 312 VSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTA 387 (491)
Q Consensus 312 ~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~i~~~~~~~~r~~~~~~f~~g-~~~-vLva 387 (491)
.....|...|.+++.... .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|+++ ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999998863 5679999999999999999999875 99999999999999999999999998 677 7889
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEE--EEeCcc
Q 011188 388 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY--TFFTAA 438 (491)
Q Consensus 388 T~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~~ 438 (491)
|+++++|+|++.+++||+||+||++..|.||+||++|.|+.+.++ .|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999999987654 455544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.90 E-value=3.2e-09 Score=110.25 Aligned_cols=146 Identities=23% Similarity=0.334 Sum_probs=90.0
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHH--HHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 110 TPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 110 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT--~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.+.|.++++.++.++.+++.+++|+||| ++++++.+..+.. ..+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4455655554321 1356899999999999999888776543332
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCce
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 267 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~ 267 (491)
+..... ..... ....+ ..++-.+|+.. . +.........+++||||||+ |.+ ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 211000 00000 00000 01222222221 1 11111222378999999999 444 56778888888888888
Q ss_pred EEeccC
Q 011188 268 LYWSAT 273 (491)
Q Consensus 268 i~~SAT 273 (491)
+++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 887644
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.70 E-value=2.1e-06 Score=89.46 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
...+++.|.+|+..++.+.-+++.||+|+|||.+..- ++.++... .+.++|+++||..-+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999877899999999999987433 45555432 2567999999999999998888764
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.68 E-value=5.3e-07 Score=94.60 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|++-|.+|+..++..++ .||.||+|||||.+.+- ++.++..+ +.++|+++||..=+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 689999999999887665 78999999999987444 44555542 6689999999998888888887643
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.60 E-value=1.9e-06 Score=86.44 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred CCCCCCcHHHHHHHHHhhcC----C-cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 011188 104 AGFFEPTPIQAQGWPMALKG----R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 178 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~----~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 178 (491)
..|..|++-|.+++..++.. + .+++.|+.|||||.+. ..++..+.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 46778999999999976532 3 7999999999999763 44566665531 23689999998877666554
Q ss_pred HHHhcCCCCceEEEEECCccChhhHHHhh----cCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHH
Q 011188 179 STKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQI 254 (491)
Q Consensus 179 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~----~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~ 254 (491)
+. ..+..++. ..... .....+.. .....+..+++||+||++.+. ...+
T Consensus 94 ~~-------~~~~T~h~-------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~ 145 (459)
T 3upu_A 94 SG-------KEASTIHS-------ILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLF 145 (459)
T ss_dssp HS-------SCEEEHHH-------HHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHH
T ss_pred hc-------cchhhHHH-------HhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHH
Confidence 41 11110000 00000 00000000 112345678999999999654 4455
Q ss_pred HHHHhhcCCCCceEEec
Q 011188 255 KKILSQIRPDRQTLYWS 271 (491)
Q Consensus 255 ~~i~~~~~~~~~~i~~S 271 (491)
..++..++...+++++.
T Consensus 146 ~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 146 KILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEEC
Confidence 66666665555555443
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.46 E-value=9.6e-07 Score=90.69 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..+++.|.+++..++.++.+++.++.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~~----- 254 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEVTGR----- 254 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHTS-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhcc-----
Confidence 3689999999999999999999999999999763 334444443 266799999999888776654421
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHH----HhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM----LESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 262 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~----l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~ 262 (491)
.. .|..+++.. +.........+++|||||++.+. ...+..++..++
T Consensus 255 --~a------------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 255 --TA------------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp --CE------------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred --cH------------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 00 111111100 01112233468899999999764 556777788787
Q ss_pred CCCceEEecc
Q 011188 263 PDRQTLYWSA 272 (491)
Q Consensus 263 ~~~~~i~~SA 272 (491)
...+++++--
T Consensus 305 ~~~~lilvGD 314 (574)
T 3e1s_A 305 PGARVLLVGD 314 (574)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEec
Confidence 7777766543
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.33 E-value=4.9e-05 Score=79.84 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
..+++-|.+++.. ....++|.|+.|||||.+.+--+ .++.... .....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri-~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRI-AWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHH-HHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 35679999999999998755433 3444321 1123579999999999999999998763
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.30 E-value=6.9e-06 Score=87.51 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
...+++.|.+|+..++.+.-.++.||+|+|||.+.. .++.++... .+.++++++||..-+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999999888789999999999998743 355555542 2567999999999999988888764
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=5.2e-06 Score=88.54 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=56.6
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+..+++.|.+|+..++.+.-++|.||+|+|||.+..- ++.++... .+.++|+++||..-+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 4578999999999998877789999999999987443 44444331 25679999999999999999888753
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.24 E-value=1.1e-05 Score=75.32 Aligned_cols=122 Identities=9% Similarity=0.025 Sum_probs=90.0
Q ss_pred ChhhHHHHHHHHHHhhcc-CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccc
Q 011188 313 SESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 391 (491)
Q Consensus 313 ~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 391 (491)
....|+..|.+++..+.. +.++|||++..+..+.+..++...++....+.|.....++ + -.+....+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCC
Confidence 467899999999888754 5599999999999999999999999999999998554321 1 123455565667776
Q ss_pred cccCC-----CCCCCEEEEcCCCCChhHH-HHhhhhcccCC--C--cceEEEEeCccc
Q 011188 392 ARGLD-----VKDVKYVINYDFPGSLEDY-VHRIGRTGRAG--A--KGTAYTFFTAAN 439 (491)
Q Consensus 392 ~~Gid-----i~~~~~VI~~~~p~s~~~~-~Qr~GR~gR~g--~--~g~~~~~~~~~~ 439 (491)
.-|+| +..++.||.||..|++..- +|.+-|+.|.+ + .-.+|.+++...
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 77776 6789999999999999885 99999999973 2 345677777553
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.55 E-value=0.0007 Score=65.38 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998775556689999999999987666555544432 26679999999999887777776543
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.40 E-value=0.00053 Score=67.07 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=63.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
-.++.|+.|+|||... ..+.. ....+|++||++++..|.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVN--------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEEcCCCCCHHHHH-----HHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 3778899999999852 22222 123699999999999988887543210
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
.....-|.|.++++- .........+++|||||+-.+ + ...+..++...+. .+++++--+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 011234677666432 111212224889999999844 3 2333444444443 555555444
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.0015 Score=56.04 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=25.2
Q ss_pred cHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 110 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 110 ~~~Q~~~i~~i~---------~~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
.+.|.+++..+. .++.+++.+|+|+|||..+.. +...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~-i~~~~ 62 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA-TLKAI 62 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH-HHHHH
Confidence 445666665443 367899999999999976433 34443
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.20 E-value=0.0063 Score=62.83 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
.|+|+|...+..+-..+..++..+-|+|||.+....++..+... .+..+++++|+...|..+.+.++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 68999999998775556789999999999987665555555442 2567999999999998888887766543
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.16 E-value=0.0012 Score=57.15 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
++=.++.+++|+|||+..+- ++..+.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~~-------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAKI-------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHHH-------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHH-------CCCEEEEEEecc
Confidence 34578889999999987554 3444333 267799999874
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.11 E-value=0.0015 Score=56.34 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
++-.++.+++|+|||+.++- ++..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHH-------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHH-------CCCeEEEEeecc
Confidence 45578999999999987544 3333332 156788988873
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.10 E-value=0.00055 Score=60.87 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=51.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
+.-.++.+++|+|||+..+- ++..+.. .+.+++++.|...- . ....+....++. .
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~-------~g~kVli~~~~~d~--r---~~~~i~srlG~~---------~--- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEY-------ADVKYLVFKPKIDT--R---SIRNIQSRTGTS---------L--- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHH-------TTCCEEEEEECCCG--G---GCSSCCCCCCCS---------S---
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHh-------cCCEEEEEEeccCc--h---HHHHHHHhcCCC---------c---
Confidence 44578889999999987554 3444433 25678888875420 0 000111121111 0
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
..+-+.+...+...+.... .-.++++|||||++.+.
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233566666766665432 22458899999999754
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.04 E-value=0.00088 Score=58.72 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=26.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
+=.++.+++|+|||+.++-.+..+... +.+++++.|..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEecc
Confidence 336688999999998755544444333 67799999875
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.007 Score=56.79 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
+.++++.||+|+|||++.-. ++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 45799999999999987443 5566544
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.89 E-value=0.0032 Score=66.73 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=70.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..|++-|.+++.. ....++|.|..|||||.+..--+ .++.... ......+|+|+.|+..|.++.+.+.+.....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri-~~ll~~~---~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRI-AYLMAEK---HVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTT---CCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHH-HHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999999976 35689999999999998754433 3443321 1124569999999999999999888753110
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccc-cCccEEEEcccc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNL-RRVTYLVLDEAD 243 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l-~~~~~lIiDEah 243 (491)
...+-|+|...+...+.+ ....+ -.-.+-|+|+.+
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 024678888777554332 11111 012356777765
No 113
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.74 E-value=0.0022 Score=56.11 Aligned_cols=39 Identities=18% Similarity=0.027 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
|.=.++.+++|+|||+..+-. +..... .+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~-------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY-------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH-------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH-------cCCceEEEEecc
Confidence 444788999999999864443 344333 256789999865
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.71 E-value=0.0035 Score=55.44 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
++=.++.+++|+|||..++-.+..+... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 4557888999999998755544444333 67799998864
No 115
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.57 E-value=0.004 Score=65.48 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
.+++-|.+++... +..++|.|+.|||||.+.+--+...+.... .....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999753 577999999999999875443333332211 1245699999999999999999987643
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.50 E-value=0.0019 Score=53.60 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999975
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.49 E-value=0.0061 Score=58.04 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 109 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 109 ~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
+.|+|.+++..+. +++ .+++.||.|+|||..+.. +...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHhC
Confidence 4688888876554 343 389999999999986544 5555543
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.48 E-value=0.011 Score=55.90 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+..+++.||+|+|||..+-. +...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHH
Confidence 35799999999999976433 444443
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.39 E-value=0.0074 Score=62.12 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 108 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~--~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 689999999998876 33578999999999966444 3444332 268999998755443332211
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
.|-+..|+.+.. .....++||||||=.+. .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 133446655421 13358899999999875 66677776533
Q ss_pred ceEEeccCC
Q 011188 266 QTLYWSATW 274 (491)
Q Consensus 266 ~~i~~SAT~ 274 (491)
..++||.|.
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 246667674
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.03 Score=54.16 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
...+++.||+|+|||..+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 121
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.20 E-value=0.0068 Score=52.16 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 168 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 168 (491)
++=.++.+++|+|||...+-.+-.+... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 4557889999999997644433333333 5678999886
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.033 Score=47.38 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
..++++.+|+|+|||..+.. +...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~-~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG-LAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH-HHHHHH
Confidence 45799999999999976433 444443
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.13 E-value=0.027 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+.+++.+|+|+|||..+.. +...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6799999999999986433 444444
No 124
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.08 E-value=0.015 Score=56.96 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=38.4
Q ss_pred cCccEEEEccccccc---cCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHc
Q 011188 232 RRVTYLVLDEADRML---DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 286 (491)
Q Consensus 232 ~~~~~lIiDEah~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 286 (491)
.+++++|+|++-++. +..+...+..+...+.++.-++.++|+...+....++.+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468899999998654 3335567777777777777778888887655555555543
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.05 E-value=0.12 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
..+++.||+|+|||..+.. +...+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~-~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG-LAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHH
Confidence 5699999999999976433 44444
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.94 E-value=0.024 Score=60.13 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=70.7
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-cccccc
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARG 394 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~G 394 (491)
.+..++..+..+.+++|.+|++.-+...++.+++ .++++..+||+++..++...++.+.+|+.+|+|+| ..+...
T Consensus 406 all~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 485 (780)
T 1gm5_A 406 AQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED 485 (780)
T ss_dssp HHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC
T ss_pred HHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh
Confidence 3344444444567999999999988888777654 37899999999999999999999999999999999 456667
Q ss_pred CCCCCCCEEEEcC
Q 011188 395 LDVKDVKYVINYD 407 (491)
Q Consensus 395 idi~~~~~VI~~~ 407 (491)
+++.++.+||.-.
T Consensus 486 ~~~~~l~lVVIDE 498 (780)
T 1gm5_A 486 VHFKNLGLVIIDE 498 (780)
T ss_dssp CCCSCCCEEEEES
T ss_pred hhccCCceEEecc
Confidence 8888888888443
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.039 Score=48.39 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=24.8
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEecc
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 272 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 272 (491)
....+||+||+|.+.... ...+..++........+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 456799999999875432 3445555655555555555443
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.86 E-value=0.054 Score=49.63 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~ 141 (491)
..+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998643
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.82 E-value=0.047 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.041 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
..+++.||+|+|||..+.. +...+
T Consensus 131 ~~lll~Gp~G~GKTtLa~a-ia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQS-IGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999976433 44444
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.80 E-value=0.039 Score=47.50 Aligned_cols=141 Identities=17% Similarity=0.092 Sum_probs=72.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~-L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
..+++..++|.|||.+++--++..+.. |.+|+|+.-.+. ....=.+.+.++. +.+...-.+.....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L~----v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPHG----VEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGGT----CEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhCC----cEEEEcccccccCCC
Confidence 468888999999999877766666655 778888832221 0000011223331 222211111111110
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC--cHHHHHHHHhhcCCCCceEEeccCCcHHHHH
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKEVEH 280 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 280 (491)
...- +. ......+..... ...-.++++||+||+-.....+ -.+.+..++...+....+|+.+--.|+.+.+
T Consensus 97 ~~~~----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 97 NREA----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp GHHH----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred CcHH----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 0000 00 000111122211 1222578999999997654443 2456667777777777777777667777666
Q ss_pred HHH
Q 011188 281 LAR 283 (491)
Q Consensus 281 ~~~ 283 (491)
++.
T Consensus 170 ~AD 172 (196)
T 1g5t_A 170 LAD 172 (196)
T ss_dssp HCS
T ss_pred hCc
Confidence 543
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.75 E-value=0.019 Score=64.56 Aligned_cols=72 Identities=25% Similarity=0.222 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.++++-|.++|..- +++++|.|..|||||.+.+--++..+.... ......++|++++|+..|..+.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 37899999999764 789999999999999986555555544411 0113457999999999999999888763
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.67 E-value=0.065 Score=43.84 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcCCCChHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~ 141 (491)
...+.++++.+|+|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3466789999999999998543
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.041 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
..+++.+|+|+|||..+.. +...+
T Consensus 46 ~~vll~G~~G~GKT~la~~-l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKY-IFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHHH-HHHHH
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHH
Confidence 4699999999999976433 44443
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.58 E-value=0.025 Score=54.82 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=16.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
.+++.||+|+|||..+.. +...+
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHHHH-HHHHH
Confidence 699999999999986332 44443
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.58 E-value=0.047 Score=50.41 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=30.3
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH--hhcCCcEEEEcCCCChHHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM--ALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--i~~~~~~ii~~~TGsGKT~~~ 140 (491)
|..+|+++.-.+...+.+...=. .+ -...+.+.. +.....+++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887656666655543210 00 001111111 234567999999999999753
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.50 E-value=0.017 Score=54.23 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
++++++.||+|+|||..+.. +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57899999999999976443 444444
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.45 E-value=0.03 Score=50.00 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~ 140 (491)
.+..+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 138
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.27 E-value=0.019 Score=47.05 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+....++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999974
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.26 E-value=0.11 Score=49.03 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=29.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHh-----hcCCcEEEEcCCCChHHHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMA-----LKGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i-----~~~~~~ii~~~TGsGKT~~~~ 141 (491)
|..+|+++.-.+.+.+.+...=. .|. ..+.+ ...+.+++.+|+|+|||+.+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34568887666666666643210 000 00111 123569999999999998643
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.25 E-value=0.042 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.++++.+|+|+|||..+.. +...+.
T Consensus 68 ~~vll~G~~GtGKT~la~~-la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK-MAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH-HHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 4699999999999986433 334443
No 141
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.04 E-value=0.022 Score=53.75 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=25.2
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
...+++|+||+|.+........+..++...+...++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999862222445555565555555555543
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.01 E-value=0.063 Score=52.61 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=64.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc--ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA--PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~--Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
-+++++++|+|||+...- +..++.. .+.++++++ |.+.-+ .+++..++...++.+.....+
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~------ 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE------ 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC------
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC------
Confidence 478889999999987443 3344433 255566555 333322 233444443434443221111
Q ss_pred HHHhhcCCcEEEeChHHHH-HHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHH
Q 011188 203 VRDLQKGVEIVIATPGRLI-DMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 280 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~-~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 280 (491)
..|..+. +.+... ....++++|+|.+=+.... .....+..+.....++.-++.+.||...+...
T Consensus 165 ------------~dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 165 ------------KDAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp ------------CCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred ------------CCHHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 1122211 111110 0124678888887544322 12344555555555666667777776555545
Q ss_pred HHHHHc
Q 011188 281 LARQYL 286 (491)
Q Consensus 281 ~~~~~~ 286 (491)
.+..+.
T Consensus 231 ~a~~f~ 236 (443)
T 3dm5_A 231 QALAFK 236 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.084 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+..+++.||+|+|||..+.. +...+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 45799999999999976333 44433
No 144
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.80 E-value=0.27 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
++.+++.||+|+|||..+.. +...+
T Consensus 70 ~~~vLl~GppGtGKT~la~~-la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG-MAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH-HHHHh
Confidence 35799999999999986443 44444
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.74 E-value=0.098 Score=46.87 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=30.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.|.-+++.+++|+|||..++- ++..+.. .+..++++... +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~-~~~~~~~-------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQ-FLWNGLK-------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHH-HHHHHHH-------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 466789999999999976443 3333222 14456776643 2334555555544
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.52 E-value=0.12 Score=49.17 Aligned_cols=42 Identities=10% Similarity=0.278 Sum_probs=27.5
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
.+.+++|+||+|. ++......+.+++...++...+|+.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999998 44334556666777666666566655443
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.46 E-value=0.1 Score=49.50 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~ 141 (491)
.++++.+|+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999998643
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.43 E-value=0.31 Score=45.29 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=29.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~ 140 (491)
|..+|+++.-.+.+.+.+...-. .|..+....... +..++.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34578887655655555543100 000000000111 234567999999999999863
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.37 E-value=0.18 Score=48.37 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=22.5
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
....++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456799999999875432 334444455444444444443
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.34 E-value=0.12 Score=48.14 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=24.9
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
....+++|+||+|.|.... ...+.+.++..++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3467899999999986433 334455555544455444444
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.32 E-value=0.34 Score=42.80 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+++.||+|+|||..+.. +...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~-~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL-LAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 589999999999976433 344443
No 152
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.14 E-value=0.15 Score=49.74 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=67.1
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-ccc---ccCCC
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA---RGLDV 397 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~---~Gidi 397 (491)
+.....+.++||.+|++.-+..+++.++. .++.+..++|+.+..++...++.+..++.+|+|+|. .+. .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33344567899999999999999999988 578999999999999988889999999999999994 231 12555
Q ss_pred CCCCEEEEcCC
Q 011188 398 KDVKYVINYDF 408 (491)
Q Consensus 398 ~~~~~VI~~~~ 408 (491)
.++.+||.-..
T Consensus 138 ~~~~~iViDEa 148 (414)
T 3oiy_A 138 KRFDFVFVDDV 148 (414)
T ss_dssp CCCSEEEESCH
T ss_pred ccccEEEEeCh
Confidence 67888885443
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.12 E-value=0.2 Score=44.28 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.|.-+++.+|+|+|||+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456789999999999975433
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.07 E-value=0.12 Score=48.43 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=24.5
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+..++|+||+|.+.... ...+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 456799999999886432 344555565555555555543
No 155
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.46 Score=45.78 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=30.1
Q ss_pred CcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
|-.+|++.+=-+...+.+.+. .+..|--++.-. +...+.+|+.+|+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 457899886445555555432 011111111111 122467999999999999853
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.80 E-value=0.25 Score=46.95 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=24.5
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
...+|++||+|.+.... ...+..++...+....+++.+
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 56799999999876432 344555666655555555544
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.52 E-value=0.19 Score=48.05 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
.+.+++.+|+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998643
No 158
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.44 E-value=0.31 Score=46.11 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=25.7
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
...+++|+||+|.+.... ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 357899999999886432 445566666665555555543
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.41 E-value=0.13 Score=50.73 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~ 141 (491)
.++++.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998643
No 160
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.15 Score=49.97 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred CCcCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
.|-.+|++.+=-+.+.+.|.+.= +..|-.++.- -+.--+.+|+.+|+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~---Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATL---GIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHC---CCCCCCceEeeCCCCCcHHHHH
Confidence 45578998875566666664321 1111111111 0123467999999999999853
No 161
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.04 E-value=0.31 Score=54.21 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=67.0
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccccCCCCC
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKD 399 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi~~ 399 (491)
+.....+.+++|.|+++.-+...++.+++ .+..+..+++..+..++...++.+..|+.+|+|+| ..+...+.+.+
T Consensus 646 ~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 646 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp HHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred HHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 33344567999999999988888877764 35788999999999999999999999999999999 56666788888
Q ss_pred CCEEEE
Q 011188 400 VKYVIN 405 (491)
Q Consensus 400 ~~~VI~ 405 (491)
+.+||.
T Consensus 726 l~lvIi 731 (1151)
T 2eyq_A 726 LGLLIV 731 (1151)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 888773
No 162
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.02 E-value=0.26 Score=49.74 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=25.6
Q ss_pred cCccEEEEccccccccCC--cHHHHHHHHhhcCCCCceEEeccCC
Q 011188 232 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
....+|||||+|.+.... ....+..++.. ....+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999987543 22445555544 244577777663
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.80 E-value=0.15 Score=47.74 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=23.9
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
+..+||+||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46799999999876432 233445555555555555554
No 164
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.58 E-value=0.18 Score=48.88 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
.+.+++.+|+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.56 E-value=0.23 Score=48.35 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.9
Q ss_pred CcEEE--EcCCCChHHHHH
Q 011188 124 RDLIG--IAETGSGKTLAY 140 (491)
Q Consensus 124 ~~~ii--~~~TGsGKT~~~ 140 (491)
..+++ .++.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35778 899999999763
No 166
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.44 E-value=0.67 Score=45.70 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=29.6
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAGF---FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
.|..+|+++.=.+.+.+.+...-. ..+..++ ......+.+++.+|+|+|||+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 345678887655555555542100 0000000 00122367999999999999864
No 167
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.44 E-value=0.49 Score=47.06 Aligned_cols=65 Identities=8% Similarity=0.001 Sum_probs=46.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 407 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 407 (491)
+.+++|.|.+...++.+.+.|...++.+...... . .+. ...|.|+..-+..|+.+|+.+++|..+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccCCCCEEEEEc
Confidence 4689999999999999999998887765543221 1 112 235777778888999998888877654
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.32 E-value=0.31 Score=48.12 Aligned_cols=38 Identities=24% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
|.-+++.|++|+|||..++- ++..+... .+..|+++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~-ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALT-IAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHH-HHHHHHHT------TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHH-HHHHHHHh------CCCeEEEEEC
Confidence 44589999999999965444 33333321 1445777764
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.19 E-value=0.21 Score=46.88 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
...+++.+|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999753
No 170
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.19 E-value=0.17 Score=42.72 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=70.4
Q ss_pred cHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 110 TPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 110 ~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.+-|..++..++... -.++.+.-|++||...+..++....+ .|..|.+|+|+..-.....+....-+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~~l~~---- 104 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDERLSG---- 104 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTTTCSS----
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhcCcCc----
Confidence 456889998887544 47778999999998754444444333 47889999999765443322211100
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhh-cCCCCc
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQ 266 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~-~~~~~~ 266 (491)
+++ |- ..+......+..=+++|||||..+. ...+..++.. ...+.|
T Consensus 105 -----------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 -----------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -----------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -----------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 000 10 1112222223445589999999987 3344444433 235577
Q ss_pred eEEeccC
Q 011188 267 TLYWSAT 273 (491)
Q Consensus 267 ~i~~SAT 273 (491)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8877644
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.09 E-value=0.54 Score=46.54 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
.|.-+++.|++|+|||..++-.+...... .+..|+++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-------~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-------TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-------SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEEC
Confidence 34568999999999997644433333222 1445777764
No 172
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.88 E-value=0.21 Score=49.99 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
...+++.+|+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 457999999999999864
No 173
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.80 E-value=0.35 Score=42.37 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=54.3
Q ss_pred CeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCC
Q 011188 332 SRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 400 (491)
Q Consensus 332 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~ 400 (491)
.++||.|+++.-+..+++.+++. +..+..++|+.+..++... +..+..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999999988887654 6789999999887665443 3446678999994 22 234667788
Q ss_pred CEEEEcC
Q 011188 401 KYVINYD 407 (491)
Q Consensus 401 ~~VI~~~ 407 (491)
++||.-.
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8888544
No 174
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.60 E-value=0.45 Score=52.61 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cccc---cCCC
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAAR---GLDV 397 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~---Gidi 397 (491)
+.....+.++||.+|++.-|..+++.++. .++.+..+||+.+..++...++.+..+..+|+|+|. .+.. -+++
T Consensus 115 l~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~ 194 (1104)
T 4ddu_A 115 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 194 (1104)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHT
T ss_pred HHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcc
Confidence 33344567899999999999999999988 467899999999998888899999999999999994 2311 1456
Q ss_pred CCCCEEEEcCC
Q 011188 398 KDVKYVINYDF 408 (491)
Q Consensus 398 ~~~~~VI~~~~ 408 (491)
.++.+||.-..
T Consensus 195 ~~l~~lViDEa 205 (1104)
T 4ddu_A 195 KRFDFVFVDDV 205 (1104)
T ss_dssp SCCSEEEESCH
T ss_pred cCcCEEEEeCC
Confidence 68888886543
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.57 E-value=0.29 Score=56.72 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
++.+++.+|+|+|||..+...+.... . .+.+++++....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~-~-------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEEccc
Confidence 67899999999999987554333332 2 266788887653
No 176
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.45 E-value=1.4 Score=37.57 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=52.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+.+.+.+.+ +.+..++|+.+...... .+. ....|+|+| +.+.. .+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 3469999999999999999988763 67888898876544332 222 357899999 33333 5667788
Q ss_pred cEEEEcc
Q 011188 235 TYLVLDE 241 (491)
Q Consensus 235 ~~lIiDE 241 (491)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887644
No 177
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.42 E-value=1.7 Score=32.33 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=43.9
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcE
Q 011188 334 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 384 (491)
Q Consensus 334 ~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~v 384 (491)
.+||....+-...+.+.++..|..+..++++.+.+.|.+-++.|...-.++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888889999999999999999999999999999999998754443
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.38 E-value=1.8 Score=40.00 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=26.9
Q ss_pred cCccEEEEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHH
Q 011188 232 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 283 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 283 (491)
.++++||+||.-.+.. ......+..+...+.+..-++.+.++...+....++
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 4678999999954332 112334444444444544444556654333333333
No 179
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.30 E-value=1.1 Score=41.41 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
++.+++++++|+|||+....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999986444
No 180
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.24 E-value=0.18 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=18.1
Q ss_pred hhcCCcEEEEcCCCChHHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..|.-+.+.+|+|+|||+.+..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 44577799999999999975443
No 181
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.23 E-value=0.9 Score=41.51 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.6
Q ss_pred hhcCCcEEEEcCCCChHHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..|.-+++.+|+|+|||+.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 55677899999999999976444
No 182
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.17 E-value=1.2 Score=39.79 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=53.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc------cccCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA------ARGLDVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~------~~Gidi~~ 399 (491)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..++...+. ...+|+|+|. .+ ...+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999998888777654 788999999988765443332 4678999993 22 14567788
Q ss_pred CCEEEEcC
Q 011188 400 VKYVINYD 407 (491)
Q Consensus 400 ~~~VI~~~ 407 (491)
+++||.-.
T Consensus 187 ~~~lViDE 194 (249)
T 3ber_A 187 LKYLVMDE 194 (249)
T ss_dssp CCEEEECS
T ss_pred cCEEEEcC
Confidence 88888544
No 183
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.94 E-value=0.76 Score=46.36 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=55.4
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 389 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 389 (491)
..+++||.+|++.-+....+.|+..++.+..++++.+..++..++..+..+..+|+++|.
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 356899999999999999999999999999999999999999999999999999999994
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.93 E-value=0.89 Score=40.29 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.|.-+++.+|+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456799999999999976444
No 185
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.85 E-value=0.35 Score=45.00 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~ 141 (491)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.43 E-value=0.19 Score=47.88 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 168 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 168 (491)
.|.-+++.+++|+|||..++. ++..+... +..++++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALH-AVANAQAA-------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEECC
Confidence 356689999999999976444 33333321 4457777643
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.24 E-value=8.1 Score=36.03 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=29.1
Q ss_pred hHHHHHHHhccCccccCccEEEEcccccccc---CCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 217 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 217 ~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~---~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
...+.+.+..... .--+|||||+|.+.. ..+...+..+.... +...+| ++++
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i-~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFI-MSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEE-EEES
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEE-EEcC
Confidence 4445555543211 234899999999864 34666666666554 234444 4444
No 188
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.98 E-value=0.98 Score=37.41 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=52.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...... .+. ....|+|+|. .+. ..+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA-RGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-TTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCchhcC
Confidence 456999999999999999998876 377888898876544332 222 3478999992 222 35667788
Q ss_pred cEEEEccc
Q 011188 235 TYLVLDEA 242 (491)
Q Consensus 235 ~~lIiDEa 242 (491)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88886544
No 189
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.92 E-value=0.88 Score=46.64 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=54.4
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHH--hCCCCcEEEEec
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF--KAGKSPIMTATD 389 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 389 (491)
..+.+||.+|++.-+...++.|+..++.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999999888888 578899999995
No 190
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.89 E-value=0.53 Score=45.00 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 168 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 168 (491)
.+.-+++.+++|+|||..++- ++..+... +..|+++..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~-la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA-IVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHH-HHHHHHHC-------CCeEEEEECC
Confidence 345688999999999976444 44443331 4457777654
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.87 E-value=0.28 Score=46.25 Aligned_cols=39 Identities=26% Similarity=0.143 Sum_probs=25.6
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
..|.-+++.|++|+|||..++- ++..+.. .+..|+|++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~-ia~~~a~-------~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMN-MVLSALN-------DDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHH-HHHHHHH-------TTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHH-------cCCeEEEEeC
Confidence 3455689999999999975444 3333332 2567888864
No 192
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.56 E-value=0.41 Score=50.61 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=31.0
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFF-EPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~ 139 (491)
|..+|++.+--+.+.+.+...=.. ..+|.+..-+ .+...+.+|+.+|+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHH
Confidence 446788877777777776543111 1111110000 011235699999999999975
No 193
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.31 E-value=0.27 Score=46.92 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
.++-+++.+++|+|||..++. ++..+... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeC
Confidence 456689999999999976544 33333321 445777765
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.21 E-value=3.6 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-+++++++|+|||+....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 477889999999976443
No 195
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.95 E-value=1.5 Score=36.77 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
..++||.|+++..+..+++.+.+. ++.+..++|+.+...... .+. ...+|+|+|. .+ ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 568999999999999988888765 467888898876544432 222 3578999993 22 235677788
Q ss_pred cEEEEcc
Q 011188 235 TYLVLDE 241 (491)
Q Consensus 235 ~~lIiDE 241 (491)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.89 E-value=0.62 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
.++++.||+|+|||..+.. +...+
T Consensus 192 ~~vlL~G~pG~GKT~la~~-la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG-LAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH-HHHHH
T ss_pred CceEEEcCCCCCHHHHHHH-HHHHH
Confidence 4699999999999976433 44444
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.75 E-value=0.6 Score=47.35 Aligned_cols=19 Identities=37% Similarity=0.270 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~ 140 (491)
.+..+++.+|+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667999999999999853
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.31 E-value=1.8 Score=45.90 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
..++++.+|+|+|||..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4579999999999997643
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.20 E-value=0.7 Score=43.39 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 182 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L-~~q~~~~~~~~ 182 (491)
|.-+++.+++|+|||..++. ++..+.... ...+.+..++++.-...+ ..++.+.+.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~-la~~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQ-LSVNVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHH-HHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999976443 333322110 001114567887654322 34444445554
No 200
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.12 E-value=0.81 Score=42.52 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=49.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
-+++.+|+|+|||..++-.+ ..+... ..+.+++++..-..+... .+++++-...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~-~~~~~~-----g~g~~vlyId~E~s~~~~---ra~~lGvd~d----------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMV-SSYMRQ-----YPDAVCLFYDSEFGITPA---YLRSMGVDPE----------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHH-HHHHHH-----CTTCEEEEEESSCCCCHH---HHHHTTCCGG-----------------
T ss_pred eEEEECCCCCCHHHHHHHHH-HHHHhc-----CCCceEEEEeccchhhHH---HHHHhCCCHH-----------------
Confidence 57889999999997655433 333321 125678888765544322 3455542211
Q ss_pred HhhcCCcEEEeChH---HH-HHHHhcc-CccccCccEEEEccccccc
Q 011188 205 DLQKGVEIVIATPG---RL-IDMLESH-NTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~---~l-~~~l~~~-~~~l~~~~~lIiDEah~~~ 246 (491)
++++..|. .+ +..+..- ...-..+++||||-+..+.
T Consensus 84 ------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 23444332 22 2222111 1222468899999999875
No 201
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.12 E-value=0.3 Score=46.49 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
|.-+++.+|+|+|||+.++. ++..+.. .+..++++....
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~~-------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQK-------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHHH-------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEeccc
Confidence 45688999999999975433 4444333 144577776543
No 202
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.74 E-value=1.4 Score=36.45 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=52.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
..++||.|+++.-+..+.+.+.+. ++.+..++++.+...... .+. ....|+|+|. .+. ..+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT-TTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh-cCCCcccC
Confidence 456999999999999999988875 367888888876544332 222 3478999993 222 35667788
Q ss_pred cEEEEccc
Q 011188 235 TYLVLDEA 242 (491)
Q Consensus 235 ~~lIiDEa 242 (491)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876543
No 203
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.51 E-value=1.6 Score=37.04 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+.... ...+. ....|+|+|. .+. ..+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccC
Confidence 567999999999999999888875 4678888887754433 22333 3578999993 222 24567778
Q ss_pred cEEEEc
Q 011188 235 TYLVLD 240 (491)
Q Consensus 235 ~~lIiD 240 (491)
++||.=
T Consensus 116 ~~VI~~ 121 (185)
T 2jgn_A 116 KHVINF 121 (185)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 877763
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.47 E-value=0.57 Score=45.76 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCCcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 011188 82 PKPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 82 p~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
..|..+|++.+--+...+.+... .+..|--++... +...+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 34567899987666666666432 111222222211 112467999999999999853
No 205
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.32 E-value=0.78 Score=43.64 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.+..+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445689999999999975
No 206
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.28 E-value=1.5 Score=38.10 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=52.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHH---hh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+.+.+.+.+ +.+..++|+.+...+... +. ...+|+|+| +.+. ..+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG----HPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCccC
Confidence 4579999999999999999888763 778889998776544332 22 347899999 3333 35677788
Q ss_pred cEEEE
Q 011188 235 TYLVL 239 (491)
Q Consensus 235 ~~lIi 239 (491)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.26 E-value=0.37 Score=43.72 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|.-+++++|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44666799999999999975
No 208
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=86.38 E-value=1.4 Score=49.23 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=50.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 205 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ 205 (491)
-+|.|..|||||.+.+--+...+... ..+.++|++||.. +.-++.+.+.+.. +..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q-~TFt~~~rl~~~l---~~~---------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ-MTFLMEYELAKTP---DMG---------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG-GHHHHHHHHTCCS---SCS----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc-ccHHHHHHHHHhh---hhc----------------
Confidence 36889999999988555444433332 1346799999975 3333333333221 100
Q ss_pred hhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 206 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 206 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
...++-|.|..+|...+.+..- ....-++|+...
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 0136889999988665443211 123456777764
No 209
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.32 E-value=4.2 Score=35.97 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 400 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~ 400 (491)
+.++||.+++++-+..+++.++. .++.+..++|+.+.......+.. ..+|+|+|. .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999888777654 47889999999988766555442 478999994 22 134577788
Q ss_pred CEEEEcC
Q 011188 401 KYVINYD 407 (491)
Q Consensus 401 ~~VI~~~ 407 (491)
.+||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8888544
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.28 E-value=1.4 Score=51.32 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=31.7
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 176 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 176 (491)
+-.++++++.+++|+|||..+...+...+.. +.+++++.-. ++..++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEcc-ccHHHHH
Confidence 3356789999999999998755544444333 6668887644 4444444
No 211
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.21 E-value=1.3 Score=39.08 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~ 399 (491)
+.++||.+++++-+..+++.++.. ++.+..++|+.+..++...+ ...+|+|+|. .+ ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 458999999999999998888753 67888999998876654433 2578999994 22 23456667
Q ss_pred CCEEEEcC
Q 011188 400 VKYVINYD 407 (491)
Q Consensus 400 ~~~VI~~~ 407 (491)
+++||.-.
T Consensus 167 ~~~lViDE 174 (230)
T 2oxc_A 167 IRLFILDE 174 (230)
T ss_dssp CCEEEESS
T ss_pred CCEEEeCC
Confidence 77777533
No 212
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.15 E-value=2.8 Score=36.60 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=49.1
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 400 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~ 400 (491)
.+.++||.++++.-+..+++.++.. +..+..++|+.+..++...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3457999999999999999888764 67888889887765443332 2 3478999993 22 235667788
Q ss_pred CEEEEcC
Q 011188 401 KYVINYD 407 (491)
Q Consensus 401 ~~VI~~~ 407 (491)
++||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8887543
No 213
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.68 E-value=1.1 Score=42.33 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 011188 116 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 182 (491)
Q Consensus 116 ~i~~i~~-----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L-~~q~~~~~~~~ 182 (491)
.+..++. |.-+++.+++|+|||..++. ++..... +....+.+..++++.....+ ..++.+.+.++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~-la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHT-LCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHH-HHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH-HHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3555553 34588999999999976443 3332211 10011125568888654321 23444444444
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.51 E-value=1.6 Score=41.03 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=35.3
Q ss_pred CccEEEEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHc
Q 011188 233 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 286 (491)
Q Consensus 233 ~~~~lIiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 286 (491)
..+++++|.+-+... ......+..+...+.++..++.+.++...+....++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 456788998876432 234556666666666777778888887666666555543
No 215
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.42 E-value=2.9 Score=35.73 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCCCE
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVKY 402 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~~~ 402 (491)
+.++||.++++.-+..+++.++.. .+.+..++|+.+.......+. ...+|+|+|. .+ ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999988765 467888898877654443332 2578999994 22 23456778888
Q ss_pred EEEcC
Q 011188 403 VINYD 407 (491)
Q Consensus 403 VI~~~ 407 (491)
||.-.
T Consensus 148 iViDE 152 (207)
T 2gxq_A 148 AVLDE 152 (207)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88543
No 216
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.42 E-value=1.6 Score=36.56 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
..++||.|+++.-+..+++.+... ++.+..++|+.+...... .+. ....|+|+|. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 456999999999999999998876 367888888876544332 222 3578999993 22 235667788
Q ss_pred cEEEEcccc
Q 011188 235 TYLVLDEAD 243 (491)
Q Consensus 235 ~~lIiDEah 243 (491)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888865443
No 217
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.32 E-value=3.2 Score=36.49 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=50.3
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc----cc--cCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR--GLDVK 398 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~--Gidi~ 398 (491)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+.......+ ...+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3558999999999999988888764 47788899987755443332 3678999993 22 12 36667
Q ss_pred CCCEEEEcC
Q 011188 399 DVKYVINYD 407 (491)
Q Consensus 399 ~~~~VI~~~ 407 (491)
++++||.-.
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 788877543
No 218
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.29 E-value=0.91 Score=44.58 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=32.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 173 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 173 (491)
...++++.|+||+|||... ..++..+... +..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3478999999999999863 3344444442 567888889888754
No 219
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.21 E-value=2.5 Score=37.37 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-----ccc-ccCCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKDV 400 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~~ 400 (491)
+.++||.++++.-+..+++.++.. +..+..++|+.+... ....+..+..+|+|+|. .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999998888654 467777888765433 23445566789999993 222 33567778
Q ss_pred CEEEEcC
Q 011188 401 KYVINYD 407 (491)
Q Consensus 401 ~~VI~~~ 407 (491)
++||.-.
T Consensus 175 ~~lViDE 181 (237)
T 3bor_A 175 KMFVLDE 181 (237)
T ss_dssp CEEEEES
T ss_pred cEEEECC
Confidence 8887543
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.99 E-value=3.3 Score=43.87 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCc--------EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 114 AQGWPMALKGRD--------LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 114 ~~~i~~i~~~~~--------~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..++.....+.. +++.+|||+|||..+-...-..... +..++.+- +..+...
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--------~~~~i~i~------------~s~~~~~ 563 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--------EESMIRID------------MSEYMEK 563 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--------TTCEEEEE------------GGGGCSS
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--------CcceEEEe------------chhcccc
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhh-----
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ----- 260 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~----- 260 (491)
.... .+.+...+... ..++|+|||+|.+.... ...+..++..
T Consensus 564 ~~~~---------------------------~~~l~~~~~~~-----~~~vl~lDEi~~~~~~~-~~~Ll~~le~g~~~~ 610 (758)
T 3pxi_A 564 HSTS---------------------------GGQLTEKVRRK-----PYSVVLLDAIEKAHPDV-FNILLQVLEDGRLTD 610 (758)
T ss_dssp CCCC------------------------------CHHHHHHC-----SSSEEEEECGGGSCHHH-HHHHHHHHHHSBCC-
T ss_pred cccc---------------------------cchhhHHHHhC-----CCeEEEEeCccccCHHH-HHHHHHHhccCeEEc
Q ss_pred ------cCCCCceEEec
Q 011188 261 ------IRPDRQTLYWS 271 (491)
Q Consensus 261 ------~~~~~~~i~~S 271 (491)
...+..+|+.|
T Consensus 611 ~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 611 SKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----CCBCTTCEEEEEE
T ss_pred CCCCEeccCCeEEEEeC
No 221
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.96 E-value=2.5 Score=40.33 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~ 399 (491)
+.++||.|+++.-+..+++.+++. +..+..++|+.+..+.... +..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 448999999999999988887654 6889999999887665444 3446678999993 33 23456778
Q ss_pred CCEEEEcC
Q 011188 400 VKYVINYD 407 (491)
Q Consensus 400 ~~~VI~~~ 407 (491)
+++||.-.
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88887533
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.81 E-value=1.3 Score=46.84 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
+.+|+.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999985
No 223
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.74 E-value=2.6 Score=36.07 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc----c-ccCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~-~Gidi~~ 399 (491)
+.++||.++++.-+..+++.++.. +..+..++|+.+..+.... + ....+|+|+|. .+ . ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999998888877543 5778889999886544322 2 34678999994 22 2 2345677
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 147 ~~~lViD 153 (206)
T 1vec_A 147 VQMIVLD 153 (206)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 8887753
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.71 E-value=8.4 Score=37.39 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-++++++.|+|||+....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467779999999986443
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.55 E-value=1.4 Score=50.54 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
|+-+.+.+|.|||||+.++. ++..... .+..++++.+-.+|.... +++++-..+
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAAQR-------EGKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHH-------TTCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 35689999999999987555 4433333 266788888876665544 555553321
Q ss_pred HHHhhcCCcEEEeChHH---HHHHHhccCccccCccEEEEcccccccc
Q 011188 203 VRDLQKGVEIVIATPGR---LIDMLESHNTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~---l~~~l~~~~~~l~~~~~lIiDEah~~~~ 247 (491)
+++++-|+. .+..++. ...-..+++||||.+-.+..
T Consensus 1485 --------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 --------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred --------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 356666633 2222221 11123578999999986653
No 226
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.43 E-value=1.8 Score=42.19 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHhhc--CCcEEEEcCCCChHHHH
Q 011188 113 QAQGWPMALK--GRDLIGIAETGSGKTLA 139 (491)
Q Consensus 113 Q~~~i~~i~~--~~~~ii~~~TGsGKT~~ 139 (491)
+..++..++. +.-+++.+|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4444544443 34588999999999975
No 227
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.37 E-value=4.5 Score=38.93 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccC
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRR 233 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~ 233 (491)
.+.++||.|+++.-+..+++.+.+. ++.+..++++........ .+. ...+|+|+|. .+.. .+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCccc
Confidence 3678999999999999999988875 367888888876544332 222 3578999993 3333 667778
Q ss_pred ccEEEE
Q 011188 234 VTYLVL 239 (491)
Q Consensus 234 ~~~lIi 239 (491)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.57 E-value=1.1 Score=41.79 Aligned_cols=27 Identities=22% Similarity=-0.038 Sum_probs=19.0
Q ss_pred HHHHhhc-----CCcEEEEcCCCChHHHHHHH
Q 011188 116 GWPMALK-----GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 116 ~i~~i~~-----~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+..++. +.-+++.+++|+|||..++-
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHH
Confidence 4455553 34589999999999976443
No 229
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.18 E-value=1.1 Score=43.93 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+.+|+.+|+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 367999999999999863
No 230
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.49 E-value=4.9 Score=40.04 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=22.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
.+++++++|+|||+.+.- ++.++.. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~k-LA~~l~~-------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK-LAYYYQR-------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHHH-------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHh-------CCCeEEEEec
Confidence 477889999999986443 3333333 1455666664
No 231
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.40 E-value=14 Score=32.71 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=50.8
Q ss_pred CeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCCC
Q 011188 332 SRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVK 401 (491)
Q Consensus 332 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~~ 401 (491)
.++||.+++++-+..+++.++.. +..+..++|+.+.......+ ....+|+|+|. .+ ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 48999999999999888877653 56788888887765443322 34678999994 22 2235677888
Q ss_pred EEEEcC
Q 011188 402 YVINYD 407 (491)
Q Consensus 402 ~VI~~~ 407 (491)
+||.-.
T Consensus 177 ~lViDE 182 (253)
T 1wrb_A 177 YIVLDE 182 (253)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 887543
No 232
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.24 E-value=7.4 Score=34.89 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=52.7
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec------cc-cccCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD------VA-ARGLDVK 398 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~------~~-~~Gidi~ 398 (491)
.+.++||.++++.-+..+++.+++. +..+..+.|+.........+ ..+ .+|+|+|. +. ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3557999999999999988888653 56778888988766544333 233 78999993 11 2246778
Q ss_pred CCCEEEEcC
Q 011188 399 DVKYVINYD 407 (491)
Q Consensus 399 ~~~~VI~~~ 407 (491)
++.+||.-.
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888887543
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.18 E-value=4 Score=43.49 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.++.+++.+|+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999975
No 234
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.11 E-value=1.3 Score=33.78 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+.+.+..+.++.+++|+|.+-..+...+..|+..|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4444455556678999999988899999999999999999998754
No 235
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.93 E-value=2.9 Score=38.61 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=53.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHh---h-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~---~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...+...+ . ...+|+|+| +.+. ..+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccce
Confidence 456999999999988888887664 47888999998765543332 2 357899999 3333 35677888
Q ss_pred cEEEEccc
Q 011188 235 TYLVLDEA 242 (491)
Q Consensus 235 ~~lIiDEa 242 (491)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88885444
No 236
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.77 E-value=1.4 Score=38.27 Aligned_cols=31 Identities=26% Similarity=0.163 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHH
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~ 139 (491)
-+.-|..++..+..|+-+.+.+|.|+|||+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3445777888888889999999999999975
No 237
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.93 E-value=1.6 Score=42.04 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=28.6
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
..+.++++.++||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcC
Confidence 3567899999999999976433 3333333 2556778877654
No 238
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=80.76 E-value=2.2 Score=33.65 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccC-CeEEEEe-CCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 319 NKLVKLLEDIMDG-SRILIFM-DTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 319 ~~l~~~l~~~~~~-~~~lVf~-~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
..+...+..+.+. .+++|+| .+-..+...+..|+..|+++..+.|++.
T Consensus 76 ~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 76 KDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3444455555566 7899999 4777788999999999999999999865
No 239
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.72 E-value=12 Score=37.64 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHH---hh-cCCcEEEeChHHHHHHHhccCccccC
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRR 233 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~ 233 (491)
.+.++||.|+++.-+..+++.+.+... .++.+..++++......... +. ...+|+|||. .+. ..+++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh-cCCCccc
Confidence 367899999999999999999987643 24778888888765444322 22 3578999993 333 3667888
Q ss_pred ccEEEEccc
Q 011188 234 VTYLVLDEA 242 (491)
Q Consensus 234 ~~~lIiDEa 242 (491)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 888876553
No 240
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=80.33 E-value=3.7 Score=45.24 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=57.7
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC----CC----ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cccccCC-CCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD----GW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGLD-VKD 399 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~----~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gid-i~~ 399 (491)
.+.++||.+|++.-+..+++.++.. ++ .+..++|+.+..++....+.+.+ .+|+|+|. .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4568999999999998888887643 55 78999999999888777777776 89999994 3332222 557
Q ss_pred CCEEEEcC
Q 011188 400 VKYVINYD 407 (491)
Q Consensus 400 ~~~VI~~~ 407 (491)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 88887543
No 241
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.29 E-value=2.5 Score=39.98 Aligned_cols=20 Identities=30% Similarity=0.054 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
|+-+.+.+|.|+|||..+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34588999999999975443
No 242
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.91 E-value=1.7 Score=42.30 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+.+|+.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999853
No 243
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=79.73 E-value=8.1 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-+++.+++|+|||+.+..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999976443
No 244
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.36 E-value=1.1 Score=39.78 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=30.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.|.-+++.|++|+|||..++-.+...+.. .+..+++++-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-------~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-------YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-------HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCCceeeccc-CCHHHHHHHHHHc
Confidence 34569999999999996544323333322 13446676543 2344455555443
No 245
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.08 E-value=3.2 Score=39.40 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
...++++.+|+|+|||+.+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999986433
No 246
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.94 E-value=7.7 Score=37.86 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=53.9
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC-CC---ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccc-----cCCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD-GW---PALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----GLDVKD 399 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~---~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----Gidi~~ 399 (491)
.+.++||.||++.-+...++.+++. +. .+..+||+....++..... ..+|+|+| +.+.. .+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4678999999999999888888765 55 8899999999877655443 46799999 33322 456677
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 126 ~~~vIiD 132 (494)
T 1wp9_A 126 VSLIVFD 132 (494)
T ss_dssp CSEEEEE
T ss_pred ceEEEEE
Confidence 8888753
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.68 E-value=1.1 Score=45.01 Aligned_cols=31 Identities=23% Similarity=0.014 Sum_probs=22.4
Q ss_pred CcHHHHHHHHH-hhcCCcEEEEcCCCChHHHH
Q 011188 109 PTPIQAQGWPM-ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 109 ~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~ 139 (491)
+.+.+...+.. +..+..+++++|||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445555543 45678899999999999974
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.51 E-value=1.7 Score=39.21 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~ 140 (491)
..+..+++.+++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999753
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.35 E-value=1.3 Score=37.31 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.|+-+++++|+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999985
No 250
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.28 E-value=4 Score=37.38 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+.+++.||+|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999864
No 251
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.13 E-value=2.3 Score=39.59 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=29.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
..|.-+++.|++|+|||..++- ++..+..+ +..+++++.- +-..|+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 3456699999999999965444 33333321 3568888643 22333444443
No 252
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.07 E-value=17 Score=36.88 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=56.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+++.+.+... .++.+..++|+........ .+. ...+|+|||. .+. ..+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-cCCCcccC
Confidence 66899999999999999999987643 2477888888876544332 222 3578999993 333 36678889
Q ss_pred cEEEEcccc
Q 011188 235 TYLVLDEAD 243 (491)
Q Consensus 235 ~~lIiDEah 243 (491)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 988866544
No 253
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.98 E-value=1.3 Score=41.52 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.2
Q ss_pred HhhcCCcEEEEcCCCChHHHHH
Q 011188 119 MALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 119 ~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
.+..+.++++.+|+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 4456789999999999999753
No 254
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.79 E-value=4 Score=38.03 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=28.9
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh-----cCCcEEEEcCCCChHHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~~~ii~~~TGsGKT~~~ 140 (491)
|..+|+++.=.+.+.+.+...=. .|.+ .+.+. ..+.+++.+|+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34578888655666555542100 0000 01111 2357999999999999853
No 255
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=77.68 E-value=0.94 Score=51.22 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=24.4
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
++-+++|+||+=.-+|..-...+.+.+....+++-+|..+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 3456788888876666655556666666655555444443
No 256
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.62 E-value=2 Score=41.62 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+.+|+.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999853
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.57 E-value=1.5 Score=37.71 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCChHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
..++.+++.+++|||||+.+-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 3567899999999999986443
No 258
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.16 E-value=1.8 Score=41.12 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4556778877 66669999999987
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.89 E-value=1.6 Score=41.54 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=17.5
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|+.+++++|||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999984
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.84 E-value=2.6 Score=36.97 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
++++.++.|+|||..++-
T Consensus 8 ~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 588899999999987554
No 261
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.63 E-value=1.5 Score=43.86 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHH
Q 011188 114 AQGWPMALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 114 ~~~i~~i~~~~~~ii~~~TGsGKT~~ 139 (491)
..++..+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34445566788999999999999974
No 262
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=76.56 E-value=5.7 Score=38.08 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=53.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+++.+.+.+ +.+..++++........ .+. ...+|+|+|. .+. ..+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEG----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc-cCCCccCC
Confidence 4679999999999999999998763 66788888876544432 222 3478999993 333 46778889
Q ss_pred cEEEEccc
Q 011188 235 TYLVLDEA 242 (491)
Q Consensus 235 ~~lIiDEa 242 (491)
++||.-..
T Consensus 336 ~~Vi~~~~ 343 (412)
T 3fht_A 336 SVVINFDL 343 (412)
T ss_dssp EEEEESSC
T ss_pred CEEEEECC
Confidence 98885443
No 263
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.55 E-value=5.6 Score=36.45 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
..++++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 264
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.41 E-value=1.4 Score=41.27 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+-++|++|||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 265
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=76.36 E-value=3.4 Score=40.55 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
+.++||+||+++-+..+++.+.+. ++.+..++|.. .......+. ...+|+|||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 457999999999999999999876 46788888843 333334443 3479999993 333 355676 8877
Q ss_pred E
Q 011188 238 V 238 (491)
Q Consensus 238 I 238 (491)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.19 E-value=1.3 Score=37.08 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
++-+++++++|||||+++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568899999999998643
No 267
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.83 E-value=10 Score=38.00 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=29.3
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
+..|.-+++.+++|+|||..... ++..+.. .+.+++++++... ..|+...+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~-------~G~~vi~~~~ee~-~~~l~~~~~ 329 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FVENACA-------NKERAILFAYEES-RAQLLRNAY 329 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHh-------CCCCEEEEEEeCC-HHHHHHHHH
Confidence 34566789999999999975333 2222221 1445666665322 234444443
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.78 E-value=1.7 Score=36.55 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.+++++++|||||+++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999986444
No 269
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=75.69 E-value=2.2 Score=33.38 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHhhccCCeEEEEeCCccc--HHHHHHHHHhCCCceEEEcCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKG--CDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~--~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+...+..+.++.+++|+|.+-.. +...+..|+..|+++..+.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 44444555567789999999777 88999999999999888888753
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.51 E-value=1.8 Score=37.21 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.++-+.+++|+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999985
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.48 E-value=1.4 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChHHHH
Q 011188 123 GRDLIGIAETGSGKTLA 139 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~ 139 (491)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999965
No 272
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.33 E-value=6.8 Score=37.16 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH---HHhhc-CCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+++.+.+.+ +.+..++++.+..... ..+.. ..+|+|+|. .+ ...+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEG----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 5689999999999999999888763 6678888887654432 22333 478999993 33 346778889
Q ss_pred cEEEEccccc
Q 011188 235 TYLVLDEADR 244 (491)
Q Consensus 235 ~~lIiDEah~ 244 (491)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9998766554
No 273
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.32 E-value=2.7 Score=36.56 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 400 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~ 400 (491)
+.++||.++++.-+..+++.++. .+..+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 45899999999999888887765 36788889998765543332 22 378999994 22 335566778
Q ss_pred CEEEEcC
Q 011188 401 KYVINYD 407 (491)
Q Consensus 401 ~~VI~~~ 407 (491)
.+||.-.
T Consensus 157 ~~iViDE 163 (224)
T 1qde_A 157 KMFILDE 163 (224)
T ss_dssp CEEEEET
T ss_pred cEEEEcC
Confidence 8887543
No 274
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=75.13 E-value=2.2 Score=39.83 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.0
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceE
Confidence 445667877 66679999999987
No 275
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.03 E-value=4.4 Score=35.00 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHH
Q 011188 96 YVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVH 147 (491)
Q Consensus 96 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~ii~~~TGsGKT~~~~~~~l~~ 147 (491)
.+.+.|.-.++ .+-.. ...+..++.+ ..+++.+|.|+|||..+ .+++..
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 45555554443 33333 3444444443 24889999999999753 334444
No 276
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=74.93 E-value=3.4 Score=31.26 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 366 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~i~~~~~ 366 (491)
+...+..+.++.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3344455556778999999988899999999999995 888888864
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=74.91 E-value=1.9 Score=37.34 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.++-+++++|+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 355688999999999985
No 278
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.75 E-value=34 Score=35.29 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=57.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHH---hh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+|+.-+..+.+.+.+.+ +.+..++++......... +. ...+|+|+|. .+ ...+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIG----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcC----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 6689999999999999999888763 677778877654433322 33 3578999993 22 346678889
Q ss_pred cEEEEccccccc
Q 011188 235 TYLVLDEADRML 246 (491)
Q Consensus 235 ~~lIiDEah~~~ 246 (491)
++||+-+++...
T Consensus 515 ~lVi~~d~d~~G 526 (661)
T 2d7d_A 515 SLVAILDADKEG 526 (661)
T ss_dssp EEEEETTTTCCT
T ss_pred CEEEEeCccccc
Confidence 999999987643
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.57 E-value=1.4 Score=37.91 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~ 140 (491)
+..++-+++++|+|+|||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456678999999999999853
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.56 E-value=1.6 Score=36.63 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCChHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
..++.+++.+++|+|||+.+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3556799999999999986443
No 281
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.30 E-value=2.9 Score=36.15 Aligned_cols=21 Identities=29% Similarity=0.060 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.|.-+++.+++|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456689999999999976443
No 282
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.28 E-value=2.1 Score=40.31 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.7
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 344567777 66779999999987
No 283
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=74.17 E-value=2.4 Score=40.12 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.2
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLAY 140 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~~ 140 (491)
.+..++.|.+ +++-++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667788887 566699999999873
No 284
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.16 E-value=2.3 Score=40.98 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=17.3
Q ss_pred HHhhcCCc--EEEEcCCCChHHHH
Q 011188 118 PMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 118 ~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
..++.|.+ +++-++||||||.+
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeE
Confidence 34567776 66679999999987
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.14 E-value=1.7 Score=40.38 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~ 141 (491)
-++|.+|||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47789999999997643
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.90 E-value=1.5 Score=36.36 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~ 141 (491)
-++++|++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 287
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.84 E-value=1.6 Score=41.02 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|+.+++++|||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44688999999999999983
No 288
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.83 E-value=1.6 Score=38.03 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=48.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC--------CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc----c-ccCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLD 396 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~-~Gid 396 (491)
+.++||.++++.-+..+++.+++. +..+..++|+.+..+... .+ ....+|+|+|. .+ . ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888877543 577888888875433211 11 23568999993 22 2 2356
Q ss_pred CCCCCEEEEcC
Q 011188 397 VKDVKYVINYD 407 (491)
Q Consensus 397 i~~~~~VI~~~ 407 (491)
+..+++||.-.
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66778777533
No 289
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.73 E-value=1.8 Score=39.98 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-+++++|||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 378899999999976433
No 290
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.67 E-value=7.3 Score=35.08 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHhhcCC-----cEEEEcCCCChHHHHHH
Q 011188 95 DYVMQEISKAGFFEPTPIQAQG-WPMALKGR-----DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~Q~~~-i~~i~~~~-----~~ii~~~TGsGKT~~~~ 141 (491)
..+.+.|...|+. |.+... +..++.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677777777763 555333 34455543 48999999999998644
No 291
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=73.65 E-value=2.5 Score=39.53 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.9
Q ss_pred HHHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 115 QGWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 115 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
..+..++.|.+ +++-++||||||.+
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 35666788887 66679999999986
No 292
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=73.53 E-value=2.5 Score=40.26 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 344667877 66679999999987
No 293
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=73.49 E-value=2.6 Score=39.84 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=17.4
Q ss_pred HHhhcCCc--EEEEcCCCChHHHH
Q 011188 118 PMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 118 ~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
..++.|.+ +++-++||||||.+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEE
Confidence 44567876 66679999999986
No 294
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=73.37 E-value=2.5 Score=39.87 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=18.5
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 3445677877 66679999999987
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.35 E-value=1.9 Score=38.70 Aligned_cols=17 Identities=29% Similarity=0.053 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~ 141 (491)
-+++++|||||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999998543
No 296
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=73.34 E-value=2.5 Score=40.00 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4455678887 56669999999987
No 297
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=73.23 E-value=7.7 Score=36.34 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=51.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+++.+.+. ++.+..++++.+...... .+. ...+|+|+|. .+.. .+++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 567899999999999999998876 367888888876544322 222 3578999993 2222 4567778
Q ss_pred cEEEEccc
Q 011188 235 TYLVLDEA 242 (491)
Q Consensus 235 ~~lIiDEa 242 (491)
++||.-+.
T Consensus 308 ~~Vi~~~~ 315 (367)
T 1hv8_A 308 NCVINYHL 315 (367)
T ss_dssp SEEEESSC
T ss_pred CEEEEecC
Confidence 88876443
No 298
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.20 E-value=2.5 Score=39.13 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~ 140 (491)
....++++.+++|+|||..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34568999999999999853
No 299
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=73.14 E-value=2.6 Score=40.03 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 344667877 66679999999987
No 300
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.08 E-value=2.6 Score=40.07 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3445677877 66679999999986
No 301
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=73.07 E-value=1.6 Score=36.96 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
..|+-+++.+++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566789999999999984
No 302
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=73.06 E-value=2.3 Score=40.08 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.6
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLAY 140 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~~ 140 (491)
.+..++.|.+ +++-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778887 666799999999873
No 303
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.04 E-value=2.7 Score=40.55 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLAY 140 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~~ 140 (491)
.+..++.|.+ +++-++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5566778887 566699999999873
No 304
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=73.00 E-value=0.99 Score=41.19 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=25.5
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHh--hcCCcEEEEcCCCChHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA--LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~i--~~~~~~ii~~~TGsGKT~~ 139 (491)
|..+|++.+-.+.+.+.+...= ..|+. .+++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3467888876666666654321 11221 1222221 1234599999999999975
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.00 E-value=2.1 Score=36.62 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~ 140 (491)
.|.-+.+.||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999853
No 306
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=72.99 E-value=2.6 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.4
Q ss_pred HHhhcCCc--EEEEcCCCChHHHH
Q 011188 118 PMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 118 ~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
..++.|.+ +++-++||||||.+
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceE
Confidence 34667877 66679999999986
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.89 E-value=1.8 Score=36.56 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~ 141 (491)
.+..+++++++|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 308
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=72.88 E-value=2.7 Score=39.65 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ ++.-++||||||.+
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 344667877 66679999999987
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.88 E-value=2.2 Score=36.61 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~ 140 (491)
..+.-+++.||+|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999853
No 310
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.75 E-value=5 Score=40.38 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=47.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-ccc----cc-C-CCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----RG-L-DVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~G-i-di~~ 399 (491)
+.++||.||++.-+...++.++.. ++.+..++|+.+...+...+. ...+|+|+|. .+. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888777654 889999999987655433322 1367999993 332 22 3 5677
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8888753
No 311
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.72 E-value=16 Score=37.86 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=56.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHH---hh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+|+.-+..+.+.+.+.+ +.+..++++......... +. ...+|+|+| +.+ ...+++.++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCC
Confidence 6689999999999999999888764 667778877654433322 33 347899999 222 236677889
Q ss_pred cEEEEcccccc
Q 011188 235 TYLVLDEADRM 245 (491)
Q Consensus 235 ~~lIiDEah~~ 245 (491)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998887653
No 312
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=72.66 E-value=9.4 Score=38.88 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=28.2
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
+.+-+++++||.-.-+|......+.+.+..+..+. ++++.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~i 535 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVI 535 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 45678999999998888776777777777765544 44443
No 313
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=72.59 E-value=2.7 Score=39.80 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=18.6
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 3455678877 56669999999987
No 314
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=72.55 E-value=2.7 Score=39.82 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 344567877 66679999999987
No 315
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=72.53 E-value=2.5 Score=40.06 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.4
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3445667877 66679999999986
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.29 E-value=2.3 Score=36.19 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 317
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.23 E-value=2.6 Score=34.89 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
+..+++.++.|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999853
No 318
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.93 E-value=3.9 Score=40.09 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
.|.-+++.|++|+|||..++- ++.++..+ +..|++++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~-ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHH-HHHHHHHT-------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHH-HHHHHHHc-------CCEEEEEEC
Confidence 345589999999999976444 33333331 556888864
No 319
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.79 E-value=2.5 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
..++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3567789999999999985
No 320
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=71.77 E-value=2.8 Score=40.15 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.3
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLAY 140 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~~ 140 (491)
+..++.|.+ +++-++||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344667876 666799999999873
No 321
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=71.64 E-value=11 Score=36.58 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=50.8
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 162 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
+||.|+++.-+..+++.+.+. ++.+..++|+....+... .+. ....|+|||. .+ ...+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCEE
Confidence 999999999999999888875 367888898876544432 222 3478999994 33 346778888888
Q ss_pred EEc
Q 011188 238 VLD 240 (491)
Q Consensus 238 IiD 240 (491)
|.-
T Consensus 373 I~~ 375 (434)
T 2db3_A 373 INY 375 (434)
T ss_dssp EES
T ss_pred EEE
Confidence 753
No 322
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.64 E-value=7.4 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
.+.+++.+|+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 323
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.37 E-value=1.8 Score=38.82 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+.+++.+|+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999753
No 324
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.33 E-value=8.7 Score=36.83 Aligned_cols=73 Identities=8% Similarity=0.229 Sum_probs=52.2
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
..++||.|+++.-+..+++.+.+.+ +.+..++|+........ .+. ....|+|+|. .+ ...+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREAN----FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCC----CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 3579999999999999998888753 66788888876544322 222 3578999994 33 346678888
Q ss_pred cEEEEcc
Q 011188 235 TYLVLDE 241 (491)
Q Consensus 235 ~~lIiDE 241 (491)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 8888643
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=71.31 E-value=2 Score=36.29 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..+++.+++|||||+.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999986433
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.30 E-value=2.4 Score=37.92 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
.+.+++.+|+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999997643
No 327
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=71.26 E-value=9.2 Score=27.22 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHhh--ccCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 011188 321 LVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 366 (491)
Q Consensus 321 l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~i~~~~~ 366 (491)
+.+.+.++ .++.+++|+|.+-..+...+..|+..|+. +..+ |++.
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 33444554 45678999999988889999999999985 5555 6643
No 328
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=71.20 E-value=2.7 Score=40.07 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=17.7
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 334567777 66679999999986
No 329
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=71.10 E-value=2.6 Score=40.14 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.1
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 4566778887 66669999999987
No 330
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=71.08 E-value=7.7 Score=35.66 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=66.5
Q ss_pred HHHHHHhhcc---CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc-c
Q 011188 321 LVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-A 391 (491)
Q Consensus 321 l~~~l~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~ 391 (491)
++.++..+.. ..++||.+++++-|..+++.++.. ++.+..+.++...... .....+|+|+|.- +
T Consensus 149 ~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l 221 (300)
T 3fmo_B 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTV 221 (300)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHH
T ss_pred HHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHH
Confidence 4445544332 237999999999999988777653 4567777776543221 1345689999942 2
Q ss_pred -----c-ccCCCCCCCEEEEcCCC-----CChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHH
Q 011188 392 -----A-RGLDVKDVKYVINYDFP-----GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 392 -----~-~Gidi~~~~~VI~~~~p-----~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 446 (491)
. ..+++.++.+||.-... ......+.++-+.. ....-+++++..-......+
T Consensus 222 ~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~v~~~ 284 (300)
T 3fmo_B 222 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML---PRNCQMLLFSATFEDSVWKF 284 (300)
T ss_dssp HHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS---CTTCEEEEEESCCCHHHHHH
T ss_pred HHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC---CCCCEEEEEeccCCHHHHHH
Confidence 1 35677889988864432 12222233333332 23445666666543333333
No 331
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.95 E-value=1.8 Score=38.68 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=28.9
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHH
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~ 139 (491)
|..+|+++.-.+.....+...-.. . -...++..+- -.+.+++.+|+|+|||+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 456788876555555555432100 0 0112222211 124599999999999975
No 332
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=70.93 E-value=4.2 Score=29.81 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=32.6
Q ss_pred hhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 327 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 327 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
.+.+ .+++|+|.+-..+...+..|+..|+.+..+.|++.
T Consensus 50 ~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 50 GLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred hCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 3445 78999999988888999999999999888888764
No 333
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=70.90 E-value=18 Score=27.29 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=43.8
Q ss_pred HHHHHHhhccCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q 011188 321 LVKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 385 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vL 385 (491)
+.+.++......+++||.. .-..|..+.+.|.+.+++...+.=......+..+.+.........+
T Consensus 7 ~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 7 LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred HHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3445555556678999998 4789999999999999887777655555555555544333333333
No 334
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=70.64 E-value=2.6 Score=31.60 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.8
Q ss_pred hccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCC
Q 011188 328 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 365 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~ 365 (491)
+.++.+++|+|.+-..+...+..|+..|+++..+.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998889999999999999988888874
No 335
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.59 E-value=2.9 Score=40.47 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=19.9
Q ss_pred HHHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 115 QGWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 115 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
..+..++.|.+ +++-++||||||.+
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 35667788887 66669999999987
No 336
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.55 E-value=2.5 Score=31.50 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred hccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 328 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+.++.+++|+|.+-..+...+..|+..|+++..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 345678999999988899999999999998888888753
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.43 E-value=2.9 Score=35.32 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
+-+.+.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999985
No 338
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=70.36 E-value=3 Score=36.37 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.0
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|+-+.+++|+|+|||+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44677899999999999984
No 339
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.21 E-value=5.4 Score=48.09 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-HHH---HHhhcCCcEEEEcCCCChHHHHHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQA-QGW---PMALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~-~~i---~~i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.+.+.+.+.+.++ .+.+.+. +++ ..+...+.++++||||+|||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34556667777776 4556553 333 3344567899999999999987543
No 340
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=70.16 E-value=12 Score=35.52 Aligned_cols=73 Identities=7% Similarity=0.168 Sum_probs=52.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH---HHhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~---~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
..++||.|+++.-+..+++.+.+.+ +.+..++++....... ..+. ....|+|+|. .+ ...+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCC
Confidence 4689999999999999999998764 6678888887654432 2232 3478999993 22 235677788
Q ss_pred cEEEEcc
Q 011188 235 TYLVLDE 241 (491)
Q Consensus 235 ~~lIiDE 241 (491)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8887643
No 341
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=70.16 E-value=2.8 Score=31.67 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=32.9
Q ss_pred hhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCC
Q 011188 327 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 365 (491)
Q Consensus 327 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~ 365 (491)
++.++.+++|+|.+-..+...+..|++.|+++..+.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 345567899999998888999999999999988887764
No 342
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=69.92 E-value=3.3 Score=40.44 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=17.9
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 011188 117 WPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 117 i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
+..++.|.+ +++-++||||||.+
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEE
Confidence 344567877 66679999999987
No 343
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.91 E-value=2.1 Score=35.41 Aligned_cols=18 Identities=11% Similarity=-0.245 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.|+.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986433
No 344
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=72.65 E-value=0.94 Score=37.84 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCc
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...... .+. ....|+|+|. .+. ..+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDV 99 (170)
Confidence 457999999999988888887765 466777888765443322 222 2467999992 222 24456667
Q ss_pred cEEEEcc
Q 011188 235 TYLVLDE 241 (491)
Q Consensus 235 ~~lIiDE 241 (491)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7666543
No 345
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.58 E-value=2.2 Score=40.85 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
..+..+++++|||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4566789999999999975
No 346
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=69.58 E-value=2.6 Score=39.33 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++++|||+|||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999986443
No 347
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=69.40 E-value=3.1 Score=39.69 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=19.3
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHH
Q 011188 116 GWPMALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 116 ~i~~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.+..++.|.+ +++-++||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5566778887 66669999999986
No 348
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.27 E-value=2.7 Score=40.20 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=16.7
Q ss_pred HhhcCCc--EEEEcCCCChHHHH
Q 011188 119 MALKGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 119 ~i~~~~~--~ii~~~TGsGKT~~ 139 (491)
.++.|.+ +++-++||||||.+
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeE
Confidence 4567776 66679999999987
No 349
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.24 E-value=4.7 Score=36.90 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=17.8
Q ss_pred hhcCCcEEEEcCCCChHHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..|.-+++.|++|+|||+.+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34567799999999999975443
No 350
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=69.14 E-value=7 Score=38.39 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=19.2
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHH
Q 011188 119 MALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 119 ~i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+..|+.+++.++.|+|||..+..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHH
Confidence 345788999999999999976443
No 351
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.11 E-value=7 Score=38.94 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
+.++++.++||||||...
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999763
No 352
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.08 E-value=2.2 Score=35.53 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
-+++.+++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3788999999999854
No 353
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=68.93 E-value=2.1 Score=35.75 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.|.-+.+++|+|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455688999999999985
No 354
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=68.75 E-value=12 Score=35.44 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=51.6
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 399 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~ 399 (491)
.+.++||.|+++.-+..+++.+++ .+..+..++|+.+..+....+. ..+|+|+|. .+ ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887764 3678899999988766555443 467999993 22 22345567
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777743
No 355
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=68.54 E-value=3.6 Score=36.85 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.++.+++.+++|+|||+++-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3488999999999999986433
No 356
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=68.49 E-value=6.9 Score=33.26 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=19.4
Q ss_pred CcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 210 VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 210 ~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
.+++-+.++.+...+..-. ..++++|+|=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l~---~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKDL---ADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHHT---TTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHhc---CCCCEEEEECCCC
Confidence 3555555566655554422 3588999996654
No 357
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=68.10 E-value=4.8 Score=35.01 Aligned_cols=19 Identities=32% Similarity=0.115 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~ 140 (491)
.|+-+.+.+|+|+|||+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566899999999999753
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.78 E-value=5.1 Score=37.00 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChHHHH
Q 011188 123 GRDLIGIAETGSGKTLA 139 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~ 139 (491)
+.-+.+.+|+|+|||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45588889999999975
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=67.76 E-value=3.5 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.3
Q ss_pred HhhcCCcEEEEcCCCChHHHH
Q 011188 119 MALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 119 ~i~~~~~~ii~~~TGsGKT~~ 139 (491)
.+..|+-+.+.+|+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 466788899999999999984
No 360
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=67.67 E-value=2.9 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~ 141 (491)
..+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999998633
No 361
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.67 E-value=2.3 Score=35.45 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
+..++++++.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998543
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.56 E-value=3 Score=39.14 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-++|++|||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478899999999976443
No 363
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.55 E-value=3.4 Score=36.57 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=48.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc----cc---cCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR---GLDVK 398 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~---Gidi~ 398 (491)
+.++||.++++.-+..+++.+++. ++.+..++++..... .......+..+|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999998888764 566666665432211 11122345678999993 22 12 47788
Q ss_pred CCCEEEEcC
Q 011188 399 DVKYVINYD 407 (491)
Q Consensus 399 ~~~~VI~~~ 407 (491)
++.+||.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888888544
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=67.46 E-value=3.8 Score=33.25 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378899999999975
No 365
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.46 E-value=3.5 Score=35.25 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~ 140 (491)
.++.+++.++.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=67.40 E-value=2.5 Score=35.56 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..+++.+++|||||+.+-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.29 E-value=2.4 Score=38.53 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.0
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
+.+++.+|+|+|||+.
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 4599999999999975
No 368
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=67.29 E-value=7.1 Score=44.09 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=28.6
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
+++-+++|+||+=.-+|..-...+.+.+..+.+++-+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999998888776777777766654454444433
No 369
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=67.20 E-value=20 Score=27.13 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=43.9
Q ss_pred HHHHHHhhccCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q 011188 321 LVKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 386 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLv 386 (491)
+.+.++......+++||.. +-..|..+.+.|...+++...+.=..+...+..+.+.......+.++
T Consensus 5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 3445555656679999994 66789999999999998877776555665555554433333344443
No 370
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=66.96 E-value=10 Score=42.31 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=39.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCC----CCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQP----FLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
..+|.|.-|||||.+...-++..+.... .........+|+|+=|+.=|.++.+.+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999886665666665321 00111234699999999888887777765
No 371
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=66.96 E-value=7.6 Score=40.31 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
+.++||+||+++-++.+++.+.+. ++.+..++|. ........+. ...+|+|+| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 567999999999999988888775 4778888884 2222223333 347899999 34443 45566 7766
Q ss_pred E
Q 011188 238 V 238 (491)
Q Consensus 238 I 238 (491)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 372
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=66.33 E-value=3.8 Score=34.23 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
-.++.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 478899999999975
No 373
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.07 E-value=3.7 Score=39.15 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
..++++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 374
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=65.83 E-value=3.9 Score=35.71 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.9
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|+-+++.+|.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677799999999999984
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.78 E-value=6.5 Score=32.71 Aligned_cols=25 Identities=16% Similarity=-0.060 Sum_probs=16.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
-+.+.++.|||||+.. ..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHh
Confidence 4678899999999753 334444443
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=65.61 E-value=3.2 Score=35.12 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
..+..+++.+++|||||+++-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3456789999999999986443
No 377
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=65.59 E-value=3.8 Score=33.74 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+++++.++.|||||+++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999986544
No 378
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=65.51 E-value=8.2 Score=37.60 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=45.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHh-hcCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
+.++||+||++.-++.+++.+.+. ++.+..++|+.. ......+ ....+|+|+| +.+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 346999999999999999999886 477888887632 2222333 3357999999 44444 44454 4444
No 379
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.41 E-value=7.5 Score=42.34 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=41.4
Q ss_pred CcCCcccCC--CCHHHHHHHHHCCCCC--C--cHHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 84 PVKSFRDVG--FPDYVMQEISKAGFFE--P--TPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 84 ~~~~f~~~~--l~~~~~~~l~~~~~~~--~--~~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+..|..++ .++..++........+ | +.+=..|...++. ++.+|+.|++|+|||.+.-. +++++.
T Consensus 96 aVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 96 AVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp EECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 355566664 3777777776544433 3 3344555555553 45699999999999987554 556654
No 380
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=65.34 E-value=4.5 Score=35.56 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
...+++.+++|||||+.+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999986444
No 381
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=65.28 E-value=5.9 Score=33.25 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..+++.+++|||||+.+-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 44588999999999986443
No 382
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=65.22 E-value=8.9 Score=37.59 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=46.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
..++||.||++.-++++++.+.+. ++.+..+++.... .....+. ...+|+||| +.+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEE
Confidence 346999999999999999888765 4677777776542 2222333 347999999 44443 555666 666
Q ss_pred E
Q 011188 238 V 238 (491)
Q Consensus 238 I 238 (491)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 383
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=65.19 E-value=5.9 Score=36.88 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+-+.+.+++|+|||+....
T Consensus 106 ~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3477889999999976443
No 384
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.15 E-value=7.5 Score=38.39 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
..++++.||+|+|||..+-. +...+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~-la~~l~ 226 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQII 226 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHHH
Confidence 45799999999999986443 444443
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=65.01 E-value=2.9 Score=35.69 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~ 140 (491)
.+..+++.++.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999863
No 386
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=64.96 E-value=3.4 Score=39.70 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-++|.+|||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367899999999976443
No 387
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.85 E-value=15 Score=44.95 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-HHHH---HhhcCCcEEEEcCCCChHHHHHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQA-QGWP---MALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~-~~i~---~i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.+.+.+.+.+.++ ++.+.+. +++. .+.....++++||||+|||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34556666777777 5555443 3443 234556799999999999997544
No 388
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=64.79 E-value=9.6 Score=38.43 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.++++.+.||||||.+. -.++..+.
T Consensus 215 pHlLIaG~TGSGKS~~L-~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV-NAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CeeEEECCCCCCHHHHH-HHHHHHHH
Confidence 47999999999999763 33444443
No 389
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=64.72 E-value=4.4 Score=34.77 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
-.++.|+.|||||+.+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368899999999986544
No 390
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=64.60 E-value=4.3 Score=37.33 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++.+|+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3699999999999986443
No 391
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.58 E-value=3.7 Score=40.46 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
++++++.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999998643
No 392
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.58 E-value=3 Score=35.65 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~ 141 (491)
.-++++|+.|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 393
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.37 E-value=3.7 Score=35.09 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.-+++.+++|||||+.+-.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455688899999999986433
No 394
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.17 E-value=80 Score=31.02 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=48.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH---HHh-hcCCcEEEeChHHHHHHHhccCccccCccE
Q 011188 161 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTY 236 (491)
Q Consensus 161 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 236 (491)
..+|++.+..-+..+.+.+.+.+ ..+..++|+....... ..+ ....+|+|+|+..+.. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 34444444666666777666643 4778888887654332 222 2346899999766633 667888999
Q ss_pred EEEcccc
Q 011188 237 LVLDEAD 243 (491)
Q Consensus 237 lIiDEah 243 (491)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988877
No 395
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=63.76 E-value=3.2 Score=35.01 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.-+++.+++|||||+.+-.
T Consensus 6 ~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986433
No 396
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.69 E-value=16 Score=38.50 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHH----hCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc-c---
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-A--- 391 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~--- 391 (491)
.++.++.....+.+++|.++|+.-|...++.+. ..++.+..+.|+++..+|.... ..+|+|+|+- +
T Consensus 104 f~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fD 177 (853)
T 2fsf_A 104 ATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFD 177 (853)
T ss_dssp HHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHH
Confidence 333444333345689999999998877766654 4589999999999987655443 3689999952 2
Q ss_pred --ccc-------CCCCCCCEEEE
Q 011188 392 --ARG-------LDVKDVKYVIN 405 (491)
Q Consensus 392 --~~G-------idi~~~~~VI~ 405 (491)
..+ ++...+.++|.
T Consensus 178 yLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 178 YLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHTTCSSGGGCCCCSCCEEEE
T ss_pred HHHhhhhccHhHhcccCCcEEEE
Confidence 222 45567787774
No 397
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=63.68 E-value=4.5 Score=37.37 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
-.|+.+.|.+|+|+|||+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577799999999999974
No 398
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=63.56 E-value=43 Score=25.72 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHHhhccCCeEEEEeC------CcccHHHHHHHHHhCCCc---eEEEcCCCCHHHHHHHHHH
Q 011188 322 VKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSE 376 (491)
Q Consensus 322 ~~~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~---~~~i~~~~~~~~r~~~~~~ 376 (491)
.+.++......+++||.. .-..|..+.+.|...+++ ...+.-....+.+..+.+.
T Consensus 6 ~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 6 RKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 344555555678999998 477899999999998877 5555555556555555443
No 399
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=63.47 E-value=10 Score=39.19 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=48.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
.+.++||.++++.-++++++.+.+. ++.+..++|+...... ...+.+|+|+|. .+.. .+++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer-GIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT-GYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH-HCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc-cCCCC-CcEE
Confidence 3568999999999999999988875 4778899998765442 234569999993 3333 23353 7766
Q ss_pred E
Q 011188 238 V 238 (491)
Q Consensus 238 I 238 (491)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=63.45 E-value=4.8 Score=37.42 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.9
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
-+++.++.|+|||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 378899999999984
No 401
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=63.29 E-value=4.7 Score=33.47 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+.+++.+++|||||+.+-.
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999986443
No 402
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.13 E-value=3 Score=35.17 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++.+++|||||+.+-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999986443
No 403
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=63.09 E-value=4.4 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
-+++.+|+|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999853
No 404
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=63.07 E-value=58 Score=30.45 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
.+++++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999753
No 405
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=63.04 E-value=27 Score=25.90 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHhhccCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q 011188 325 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 386 (491)
Q Consensus 325 l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLv 386 (491)
+.+.....+++||.. .-..|..+...|...++....+.-+.....+..+...+....++.++
T Consensus 10 ~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 10 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 333334457999984 56789999999998888877777666666666655555433444443
No 406
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=63.02 E-value=16 Score=38.53 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=52.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh-------cCCCCceEEEEECCccChhhHHHhh---------cCCcEEEeChHHHHH
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKF-------GASSKIKSTCIYGGVPKGPQVRDLQ---------KGVEIVIATPGRLID 222 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~-------~~~~~~~v~~~~~g~~~~~~~~~~~---------~~~~Iiv~T~~~l~~ 222 (491)
+..+||.+|++.-+..+++.+.+. ....++.+..++++.+...+...+. ....|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 568999999999999998888752 2234688999999887655443322 2357999993
Q ss_pred HHhccCccccCccEEEE
Q 011188 223 MLESHNTNLRRVTYLVL 239 (491)
Q Consensus 223 ~l~~~~~~l~~~~~lIi 239 (491)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3333 556778887764
No 407
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.94 E-value=13 Score=39.40 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=47.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-ccc----c-cC-CCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----R-GL-DVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~-Gi-di~~ 399 (491)
+.++||.||++.-+......+++. ++.+..+||+.+...+...+. ...+|+|+|. .+. . .+ ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999988887777654 889999999987665433332 2578999993 222 2 23 4556
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7888753
No 408
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=62.93 E-value=8.3 Score=38.63 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=50.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cccc----c-C-CCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAAR----G-L-DVKD 399 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~----G-i-di~~ 399 (491)
+.++||+||++.-+...++.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+.. + + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888887777654 889999999986554433222 1467999993 3322 2 3 4566
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7887753
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=62.88 E-value=4.3 Score=35.01 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHH
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.++.+.... .+..+..+++.+++|+|||+.+-.
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHHH
Confidence 344555542 344566788999999999986443
No 410
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.62 E-value=4.1 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCChHHHH
Q 011188 123 GRDLIGIAETGSGKTLA 139 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~ 139 (491)
+.-+.|.+|+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578889999999974
No 411
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=62.25 E-value=6.3 Score=29.66 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=33.3
Q ss_pred HhhccCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 011188 326 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 366 (491)
Q Consensus 326 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~i~~~~~ 366 (491)
..+.+..+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 34455678999999988899999999999995 888888753
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=62.17 E-value=4.6 Score=37.82 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 011188 124 RDLIGIAETGSGKTLAY 140 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~ 140 (491)
..+++.+|+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999853
No 413
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=62.15 E-value=5.1 Score=31.48 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.8
Q ss_pred hccCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 011188 328 IMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 366 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~i~~~~~ 366 (491)
+.++.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 445678999999988899999999999985 888999864
No 414
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=61.71 E-value=5.4 Score=33.47 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.++.|||||+.+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986443
No 415
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.64 E-value=2.4 Score=38.17 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
.+.+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999998643
No 416
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.58 E-value=3.7 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986444
No 417
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.39 E-value=3.6 Score=36.07 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=12.4
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|+-+.+.+|+|+|||+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567788999999999975
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=61.22 E-value=3.3 Score=37.96 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
-++++|++|||||+.+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=60.98 E-value=4.3 Score=33.48 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+.+++.+++|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 420
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=60.91 E-value=5 Score=32.97 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=15.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
..|.-+.+.+|.|+|||+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456688999999999973
No 421
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=60.80 E-value=9.1 Score=40.26 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=38.6
Q ss_pred cCCcccCCC-CHHHHHHHHHCCCCC--C--cHHHHHHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 85 VKSFRDVGF-PDYVMQEISKAGFFE--P--TPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 85 ~~~f~~~~l-~~~~~~~l~~~~~~~--~--~~~Q~~~i~~i~---~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+..|..+++ ++.+++........+ | +.+=..|+..++ .++.+|+.++.|+|||.+.-. +++++.
T Consensus 125 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-im~yla 196 (783)
T 4db1_A 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR-VIQYFA 196 (783)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred cCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH-HHHhhh
Confidence 455666654 566666665433322 2 334455555554 345699999999999987544 455553
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=60.79 E-value=6.4 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++.+++|||||+.+-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999986443
No 423
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=60.66 E-value=3.5 Score=35.36 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.-+++.|+.|||||+.+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45588999999999986443
No 424
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=60.61 E-value=8.2 Score=35.55 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
+.-+.+.+|+|+|||+..
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445788999999999853
No 425
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.58 E-value=4.5 Score=34.28 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.-+++.+++|||||+.+-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345688999999999986433
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=60.50 E-value=4.2 Score=35.57 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
...+++.|++|||||+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999864
No 427
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.43 E-value=24 Score=37.32 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=51.7
Q ss_pred cCCeEEEEeCCcccHHHHHHHHH----hCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----c-------
Q 011188 330 DGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A------- 392 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~------- 392 (491)
.+..++|.++|++-|...++.+. ..|+.+..+.|+++..+|.... ..+|+++|+ -+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 45689999999998887776664 4589999999999987765543 268999994 22 1
Q ss_pred ccCCCCCCCEEEE
Q 011188 393 RGLDVKDVKYVIN 405 (491)
Q Consensus 393 ~Gidi~~~~~VI~ 405 (491)
..+++..++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 2356677887773
No 428
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=60.42 E-value=3.8 Score=34.21 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
+..+++.++.|||||+++-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=60.38 E-value=4 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986443
No 430
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.30 E-value=5.5 Score=33.45 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 431
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=60.13 E-value=4.7 Score=41.22 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 432
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.99 E-value=17 Score=37.28 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEE
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 237 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 237 (491)
..++||.|+++.-+..+++.+.+.+ +.+..+++.. .......+. ...+|+|||. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g----~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG----KRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC----CcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 4579999999999999999998763 6777788742 222223333 3578999993 4443 45554 6766
Q ss_pred E
Q 011188 238 V 238 (491)
Q Consensus 238 I 238 (491)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 433
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=59.77 E-value=6.3 Score=32.92 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++.+++|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 434
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=59.70 E-value=8.8 Score=30.47 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=33.9
Q ss_pred hhccCCeEEEEeCCcccHHHHHHHHHhCCC-ceEEEcCCCC
Q 011188 327 DIMDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 366 (491)
Q Consensus 327 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~i~~~~~ 366 (491)
.+.+..+++|+|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 345567899999998899999999999999 5889999854
No 435
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=59.67 E-value=38 Score=32.13 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=51.8
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-----ccc-ccCCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKD 399 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~ 399 (491)
.+.++||.++++.-+..+++.++.. +..+..++|+...... .+.+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3558999999999998888887653 5677777887765443 4455667889999993 222 2345666
Q ss_pred CCEEEEc
Q 011188 400 VKYVINY 406 (491)
Q Consensus 400 ~~~VI~~ 406 (491)
+++||.-
T Consensus 184 ~~~vViD 190 (414)
T 3eiq_A 184 IKMFVLD 190 (414)
T ss_dssp CCEEEEC
T ss_pred CcEEEEE
Confidence 7777743
No 436
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=59.17 E-value=6.4 Score=37.25 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=14.8
Q ss_pred cCCc--EEEEcCCCChHHHH
Q 011188 122 KGRD--LIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~--~ii~~~TGsGKT~~ 139 (491)
.|.+ +++-++||||||.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4666 57779999999987
No 437
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=59.09 E-value=10 Score=40.06 Aligned_cols=65 Identities=14% Similarity=0.316 Sum_probs=39.3
Q ss_pred CcCCcccCCC-CHHHHHHHHHCCCC--CCc--HHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 84 PVKSFRDVGF-PDYVMQEISKAGFF--EPT--PIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 84 ~~~~f~~~~l-~~~~~~~l~~~~~~--~~~--~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+..|..+++ ++.++......... .|. .+=..|+..++. ++.+|+.++.|+|||.+.-. +++++.
T Consensus 109 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 181 (795)
T 1w7j_A 109 AINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYFA 181 (795)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHH-HHHHHH
Confidence 3455666653 56666666544332 233 334455655553 45699999999999987544 555554
No 438
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.94 E-value=6.6 Score=33.34 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=25.4
Q ss_pred ccCccEEEEccccccc--cCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 231 LRRVTYLVLDEADRML--DMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 231 l~~~~~lIiDEah~~~--~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
..+.+++|+||+..+- +..|...+.+++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4677899999987663 33355666666553 23355545664
No 439
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=58.80 E-value=17 Score=37.70 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=44.3
Q ss_pred cCceEecCCCCCCcCCcccCCC-CHHHHHHHHHCCCC--CCc--HHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHH
Q 011188 72 REITVEGRDVPKPVKSFRDVGF-PDYVMQEISKAGFF--EPT--PIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLP 143 (491)
Q Consensus 72 ~~~~~~~~~~p~~~~~f~~~~l-~~~~~~~l~~~~~~--~~~--~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~ 143 (491)
..+.+..-++--.+..|..+++ ++..+......... .|. .+=..|+..++. ++.+|+.++.|+|||.+.-.
T Consensus 35 ~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~- 113 (697)
T 1lkx_A 35 DNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK- 113 (697)
T ss_dssp TCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH-
T ss_pred CCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH-
Confidence 3344333333334555666664 56666665443322 333 334455555543 45699999999999987544
Q ss_pred HHHHhhc
Q 011188 144 AIVHVNA 150 (491)
Q Consensus 144 ~l~~l~~ 150 (491)
+++++..
T Consensus 114 i~~yla~ 120 (697)
T 1lkx_A 114 IMQFLTF 120 (697)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 440
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=58.78 E-value=14 Score=38.98 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=39.4
Q ss_pred CcCCcccC-C-CCHHHHHHHHHCCCCC--C--cHHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 84 PVKSFRDV-G-FPDYVMQEISKAGFFE--P--TPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 84 ~~~~f~~~-~-l~~~~~~~l~~~~~~~--~--~~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+..|..+ + .++..+.........+ | +.+=..|+..++. ++.+|+.++.|+|||.+.-. +++++.
T Consensus 92 aVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-i~~yla 165 (784)
T 2v26_A 92 AVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 165 (784)
T ss_dssp EECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHH-HHHHHH
Confidence 34556666 3 3666766665443333 3 3334455555543 45699999999999987544 455554
No 441
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.72 E-value=2.8 Score=36.02 Aligned_cols=18 Identities=33% Similarity=0.014 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.+.-+.+.+++|||||+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345578999999999985
No 442
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=58.56 E-value=4.5 Score=34.49 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++.+++|||||+.+-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 443
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=58.55 E-value=6.7 Score=33.27 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~ 141 (491)
.+++.|++|||||+..-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36889999999998543
No 444
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.51 E-value=4.3 Score=35.88 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCChHHH
Q 011188 121 LKGRDLIGIAETGSGKTL 138 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~ 138 (491)
..|+-+.+.+|.|||||+
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356778999999999997
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.51 E-value=5.8 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.+++|||||+++-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986433
No 446
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=58.45 E-value=16 Score=27.51 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=32.6
Q ss_pred hccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 328 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
..+..+++|+|.+-..+...+..|+..|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 345678999999988889999999999986678888864
No 447
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=58.38 E-value=5.7 Score=34.50 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+.+.+++|||||+.+-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588899999999986433
No 448
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=58.35 E-value=4.6 Score=34.60 Aligned_cols=16 Identities=31% Similarity=0.094 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
.+.+.++.|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999853
No 449
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=58.22 E-value=11 Score=39.60 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=37.8
Q ss_pred cCCcccCCC-CHHHHHHHHHCCCC--CCc--HHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 85 VKSFRDVGF-PDYVMQEISKAGFF--EPT--PIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 85 ~~~f~~~~l-~~~~~~~l~~~~~~--~~~--~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+..|..+++ ++.++......... .|. .+=..|+..++. ++.+|+.++.|+|||.+.-. +++++.
T Consensus 126 vNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 197 (770)
T 1w9i_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK-VIQYLA 197 (770)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHH-HHHHHH
Confidence 445555553 56666665543332 233 333455555543 45699999999999987544 444443
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.18 E-value=7.2 Score=33.63 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.+|+||||++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999987554
No 451
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=58.14 E-value=13 Score=40.39 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=38.3
Q ss_pred CcCCcccCCC-CHHHHHHHHHCCCCC--CcH--HHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 84 PVKSFRDVGF-PDYVMQEISKAGFFE--PTP--IQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 84 ~~~~f~~~~l-~~~~~~~l~~~~~~~--~~~--~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
.+.+|..+++ ++.++.......... |.. +=..|+..++. ++.+|+.|+.|+|||.+.-. +++++
T Consensus 125 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yl 196 (1010)
T 1g8x_A 125 AVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK-VIQYL 196 (1010)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHH-HHHHH
T ss_pred EecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHH-HHHHH
Confidence 3455666653 666666665444333 332 33455555543 45699999999999987544 44444
No 452
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=58.13 E-value=6.5 Score=34.05 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+..+++.+++|||||+.+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34688999999999986443
No 453
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=58.01 E-value=18 Score=33.61 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=12.6
Q ss_pred EEEEcCCCChHHHHH
Q 011188 126 LIGIAETGSGKTLAY 140 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~ 140 (491)
+.+.||+|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677799999999853
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=57.92 E-value=6.8 Score=33.63 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 478889999999975
No 455
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.88 E-value=4.8 Score=33.03 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.++.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478899999999986433
No 456
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=57.83 E-value=11 Score=41.74 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=52.6
Q ss_pred HHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-----ccccccCC-C
Q 011188 324 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-----DVAARGLD-V 397 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~Gid-i 397 (491)
++..+..+.++||.+|++.-+...++.++.....+..++|+.+ .++..+|+|+| +.+..+-. +
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 3334455679999999999999999999887668889999886 24568899999 33444332 5
Q ss_pred CCCCEEEE
Q 011188 398 KDVKYVIN 405 (491)
Q Consensus 398 ~~~~~VI~ 405 (491)
.++.+||.
T Consensus 289 ~~l~lVVI 296 (1108)
T 3l9o_A 289 REVAWVIF 296 (1108)
T ss_dssp HHEEEEEE
T ss_pred ccCCEEEE
Confidence 56777774
No 457
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.73 E-value=4.8 Score=34.33 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
.+++.++.|||||+.+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 458
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.63 E-value=6.2 Score=37.61 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 011188 125 DLIGIAETGSGKTLA 139 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~ 139 (491)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378999999999985
No 459
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=57.49 E-value=26 Score=26.88 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHhhccCCeEEEEeC------CcccHHHHHHHHHhCCCc-eEEEcCCCCHHHHHHHHHH
Q 011188 324 LLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSE 376 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~-~~~i~~~~~~~~r~~~~~~ 376 (491)
.++......+++||.. .-..|..+.+.|.+.+++ ...+.=..+.+.+..+.+.
T Consensus 12 ~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~ 71 (118)
T 2wem_A 12 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 71 (118)
T ss_dssp HHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 3344444468999998 478899999999999885 7777666666666555443
No 460
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=57.41 E-value=8.9 Score=39.24 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=18.6
Q ss_pred HhhcCCcEEEEcCCCChHHHHH
Q 011188 119 MALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 119 ~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
.+..+..+++.+|+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4557889999999999999853
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=57.22 E-value=6.5 Score=37.38 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
-.+|++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999864
No 462
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=56.96 E-value=4.9 Score=34.31 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
.+.+.+++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999853
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=56.94 E-value=6.3 Score=38.45 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++++++|+|||+.+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3688999999999976444
No 464
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=56.91 E-value=4.6 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
-+.+++++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 465
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=56.88 E-value=2.9 Score=39.33 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999753
No 466
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=56.81 E-value=5.4 Score=34.17 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.-+++.|+.|||||+..-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 355689999999999986443
No 467
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=56.79 E-value=5.9 Score=33.99 Aligned_cols=18 Identities=28% Similarity=-0.038 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
+.-+.+.+|+|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344778899999999853
No 468
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=56.66 E-value=14 Score=29.73 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=31.1
Q ss_pred ccCCeEEEEeCCcccHHHHHHHHHhCCC-ceEEEcCCCC
Q 011188 329 MDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 366 (491)
Q Consensus 329 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~i~~~~~ 366 (491)
.++.+++|+|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3456899999998888899999999999 5899999874
No 469
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=56.49 E-value=8.5 Score=38.35 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=28.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
.|.-+++.|++|+|||..++- ++..+..+ .+..|++++-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~-~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQ-QALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHH-HHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHH-HHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 345589999999999976444 33333321 14457777642 2233444443
No 470
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=56.29 E-value=5.4 Score=34.22 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.-+++.++.|||||+.+-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355689999999999986444
No 471
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=56.27 E-value=6.6 Score=34.21 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+-+++.+|+||||++.+..
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4577889999999987544
No 472
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.11 E-value=29 Score=31.73 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-cc-----cccCCCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 400 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gidi~~~ 400 (491)
+.++||.+|++.-+..+++.+++ .+..+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999998888874 35788899999887654333 22 377999993 22 123456667
Q ss_pred CEEEEc
Q 011188 401 KYVINY 406 (491)
Q Consensus 401 ~~VI~~ 406 (491)
++||.-
T Consensus 131 ~~iViD 136 (337)
T 2z0m_A 131 EIVIID 136 (337)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 777743
No 473
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=56.05 E-value=60 Score=24.13 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=36.3
Q ss_pred cCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHH
Q 011188 330 DGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 377 (491)
Q Consensus 330 ~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f 377 (491)
...+++||.. +-..|..+...|...++....+.-..+...+..+.+..
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 3457889877 45689999999999999988887777766666555443
No 474
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=55.75 E-value=5.1 Score=35.44 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
..|+-+.+.+|.|+|||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567789999999999973
No 475
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=55.74 E-value=5.4 Score=33.55 Aligned_cols=17 Identities=29% Similarity=0.102 Sum_probs=14.0
Q ss_pred EEEEcCCCChHHHHHHH
Q 011188 126 LIGIAETGSGKTLAYLL 142 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~ 142 (491)
+++.|+.|||||+.+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986443
No 476
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=55.69 E-value=8.5 Score=33.26 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
..+++.+++|||||+.+-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986443
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=55.66 E-value=10 Score=31.84 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=22.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
+++.+++|||||.-+.- +... +..+++++.....-..+.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~-------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD-------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS-------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc-------CCCeEEEecCCCCCHHHHHHHHH
Confidence 68899999999964332 1111 23467887754433334444433
No 478
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=55.61 E-value=11 Score=35.71 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 011188 125 DLIGIAETGSGKTLAY 140 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~ 140 (491)
-+.+.+|+|+|||+..
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4778899999999853
No 479
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.60 E-value=3.1 Score=43.50 Aligned_cols=70 Identities=11% Similarity=0.245 Sum_probs=47.1
Q ss_pred CeEEEEeCCcccHHHH-HHHHHhCC---CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccc-----------cC
Q 011188 332 SRILIFMDTKKGCDQI-TRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----------GL 395 (491)
Q Consensus 332 ~~~lVf~~~~~~~~~l-~~~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----------Gi 395 (491)
.++||.+|++.-+... ++.|++.. +.+..++|+.+..++...+. +..+|+|+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 88777653 78999999877554333332 467899999 34432 24
Q ss_pred CCCCCCEEEE
Q 011188 396 DVKDVKYVIN 405 (491)
Q Consensus 396 di~~~~~VI~ 405 (491)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 5667888874
No 480
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=55.30 E-value=11 Score=40.11 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=38.0
Q ss_pred cCCcccCCC-CHHHHHHHHHCCCC--CCc--HHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 85 VKSFRDVGF-PDYVMQEISKAGFF--EPT--PIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 85 ~~~f~~~~l-~~~~~~~l~~~~~~--~~~--~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+..|..+++ ++.++......... .|. .+=..|...++. ++.+|+.++.|+|||.+.=. +++++.
T Consensus 123 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-i~~yla 194 (837)
T 1kk8_A 123 VNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKK-VIMYLA 194 (837)
T ss_dssp ECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred eCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHH-HHHHHH
Confidence 455566553 56666655543332 233 334455555553 35699999999999987544 445553
No 481
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=55.12 E-value=5.2 Score=39.56 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 011188 124 RDLIGIAETGSGKTLAY 140 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~ 140 (491)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 482
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.05 E-value=5.7 Score=33.54 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=13.9
Q ss_pred EEEEcCCCChHHHHHHH
Q 011188 126 LIGIAETGSGKTLAYLL 142 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~ 142 (491)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999986444
No 483
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=54.77 E-value=5.7 Score=34.52 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~ 139 (491)
..|+-+.+.+|.|+|||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577899999999999983
No 484
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=54.68 E-value=30 Score=33.12 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHhh---cCCcEEEEcCCCChHHHHHH
Q 011188 109 PTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 109 ~~~~Q~~~i~~i~---~~~~~ii~~~TGsGKT~~~~ 141 (491)
|-..-.++|..++ .|+.+.+.+|+|+|||....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 3344456666544 68899999999999998643
No 485
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=54.41 E-value=8 Score=34.25 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
...+++.++.|||||+.+-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34589999999999986444
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.24 E-value=7.5 Score=37.96 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+++++.+|+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999864
No 487
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=54.17 E-value=32 Score=27.17 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=41.0
Q ss_pred HHHhhccCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q 011188 324 LLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 385 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~------~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vL 385 (491)
.+.......+++||+. .-..|..+.+.|...+++...+.-......+..+.+......++++
T Consensus 27 ~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 27 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp HHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 3333333357999987 5678999999999999888877766666666665554433333333
No 488
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=54.12 E-value=11 Score=36.66 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=21.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
.++++++.|+|||+...- +..++... .+.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~-LA~~l~~~------~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGK-LGKFLREK------HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHHHT------SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHh------cCCeEEEEe
Confidence 467779999999987544 33333331 145566654
No 489
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=54.07 E-value=4.4 Score=33.77 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=11.8
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.-+++.++.|||||+.+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 490
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=54.02 E-value=6.8 Score=31.48 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=32.2
Q ss_pred ccCCeEEEEeCCc--ccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 329 MDGSRILIFMDTK--KGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 329 ~~~~~~lVf~~~~--~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
.++.+++|+|.+- ..+...+..|+..|+++..+.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3556899999987 5788999999999999999999854
No 491
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=53.88 E-value=15 Score=42.20 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 168 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 168 (491)
.++.+++.+++|+|||..++-.+...+.. +.+++++.-.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te 71 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 71 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEec
Confidence 36789999999999997655434444333 4567777654
No 492
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=53.86 E-value=7.5 Score=33.48 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
.+++.+++|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 493
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.81 E-value=5.9 Score=35.54 Aligned_cols=19 Identities=21% Similarity=0.006 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.-++++|++|||||+.+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3588999999999986443
No 494
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.49 E-value=17 Score=30.94 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=42.6
Q ss_pred CCeEEEEeCCcccHHH-HHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-ccc----c-------c
Q 011188 331 GSRILIFMDTKKGCDQ-ITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----R-------G 394 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~-l~~~L~~---~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~-------G 394 (491)
..++||+|+++.-++. +.+.++. .++.+..++|+.....+...+. ...+|+|+|. .+. . +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 4689999999988777 5555543 3678888888765332221111 1467999993 321 1 2
Q ss_pred CCCCCCCEEEEcC
Q 011188 395 LDVKDVKYVINYD 407 (491)
Q Consensus 395 idi~~~~~VI~~~ 407 (491)
+.+.++++||.-.
T Consensus 158 ~~~~~~~~iIiDE 170 (216)
T 3b6e_A 158 VQLSDFSLIIIDE 170 (216)
T ss_dssp CCGGGCSEEEETT
T ss_pred cchhcccEEEEEC
Confidence 4555666666433
No 495
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=53.38 E-value=8.3 Score=34.34 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~ 141 (491)
.+..+.+.+|+|||||+.+-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568899999999998533
No 496
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=53.23 E-value=18 Score=28.47 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=32.1
Q ss_pred ccCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 011188 329 MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 366 (491)
Q Consensus 329 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~i~~~~~ 366 (491)
.++.+++|+|.+=..+...+..|+..|+. +..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 34568999999988888899999999995 888889874
No 497
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=53.10 E-value=7.8 Score=32.83 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 011188 126 LIGIAETGSGKTLAYLLPA 144 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~ 144 (491)
+.+.+++|||||+++-...
T Consensus 11 I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 498
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=53.00 E-value=13 Score=40.31 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred cCCcccCCC-CHHHHHHHHHCCCCCCcHHHHHHHHHhh-------cCCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 85 VKSFRDVGF-PDYVMQEISKAGFFEPTPIQAQGWPMAL-------KGRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 85 ~~~f~~~~l-~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-------~~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+.+|..+++ ++.++..........+-|+=-..-..++ .++.+|+.|+.|+|||.+.=. +++++
T Consensus 100 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yl 170 (995)
T 2ycu_A 100 INPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKK-VIQYL 170 (995)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHH-HHHHH
T ss_pred eCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH-HHHHH
No 499
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=53.00 E-value=5.9 Score=35.30 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~ 140 (491)
+..|+-+.+.+|.|+|||+.+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
No 500
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.92 E-value=14 Score=40.63 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCCcccCCC-CHHHHHHHHHCCCCCCcHHHHHHHHHhh-------cCCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 85 VKSFRDVGF-PDYVMQEISKAGFFEPTPIQAQGWPMAL-------KGRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 85 ~~~f~~~~l-~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-------~~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+.+|..+++ ++.++..........+-|+=-..-..++ .++.+|+.|+.|+|||.+.=+ +++++
T Consensus 110 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yl 180 (1080)
T 2dfs_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYF 180 (1080)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred ecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHH-HHHHH
Done!