Citrus Sinensis ID: 011189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
Protein Sequence
MINIIEKIMSMLWLMLLLSWPAAASSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEccccccccccccccccccEEEcccccccccccccccEEEEEEEEcccEEEEEEEEccEEccccccccccccEEEcccccEEEcccccEEEEEccccEEEcccccccEEEEEEEEccccccccccccccccccEEEccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccEEcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHccccccccccHHcccccccccHHHHHHHccccccccEEcccccccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHEEEEcccccEEEEEcEEEccccEEEEEEEcccccHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccEEEEEccccccccccccccEEEEEEEccccEEEEEcccccHccccccccccccccEEcccccEEEcccccEEEEEEcccEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEccccEccccccccccccccEEEEEEEcccccHHHccccccEEccccEEEcccccccEEEEccccccccccccccccHHcccccccccccEEEcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEHEEccEEEEcHHHHHHHHcccccccEEccccccEEEEEEEccccEEEEEEcEEccHHHHHHHHHHHHHHHHHHHcHHHHHHHccEcEEEccEEEEEEcccccHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
MINIIEKIMSMLWLMLLLSwpaaasssnarpgceekcgdvsvpypfgiddpkcamdkyfflncnrsvsspqllfgiNIEVfnisiedgtmiGSIWTAQRCYndlggcnytdvridlgegpfkfsdtrnkltafgcdtyayMGDLVGSFWSGCISIcnnesakitenscsgigcchtplpkstksLNVTLRSAynhsrlgnfmpcdyafLADETFNLLdfqlsdydksssnakIEWVVkegkcpddqnsnvyrcgdntncdysengegyrclckpgfqgnpylgchdideckekeryhcegtckntfgnytcdcpigmhgdgkvscqgfRITTIAAVIGAAIFTVTVGILAFIACRERrkkrnffnnggmilkHQRVRIFSEAELIKAtknydksnflgeggfgsvyrgvlsddtqvavkkpkeadKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSngtlfhhihskssqvLKTWKIV
Flexible Loop (DISEMBL)
MINIIEKIMSMLWLMLLLSWPAAASSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVvkegkcpddqnsnvyrcGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKkrnffnnggmilkhqrvRIFSEAELIKATknydksnflgEGGFGSVYRGVLSDdtqvavkkpkeadKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHhihskssqvlktwkiv
Low Complexity Region (SEG)
MINIIEKImsmlwlmlllswpaaasssNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRittiaavigaaiftvtvGILAFIACRErrkkrnffnnggMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV
Disordered region (IsUnstruct)
**NIIEKIMSMLWLMLLLSWPAAA********CEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRIT*********IFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAV*********RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTW***
Disordered Region (DISOPRED)
******KIMSMLWLMLLLSW****************CGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKR**************VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD***VSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV*KTWKIV
Disordered Region (DISEMBL)
MINIIEKIMSMLWLMLLLSWPA************EKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV
Disordered Region (DISPRO)
MINIIEKIMSMLWLMLLLSWPAAASSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINIIEKIMSMLWLMLLLSWPAAASSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	491	2.2.26 [Sep-21-2011]
Q9LMP1	732	Wall-associated receptor	yes	no	0.902	0.605	0.371	4e-73
Q9LMN8	741	Wall-associated receptor	no	no	0.936	0.620	0.353	8e-65
Q9LMN7	733	Wall-associated receptor	no	no	0.936	0.627	0.333	1e-64
Q39191	735	Wall-associated receptor	no	no	0.900	0.601	0.335	7e-60
Q9LMN6	738	Wall-associated receptor	no	no	0.861	0.573	0.347	4e-57
Q7X8C5	748	Wall-associated receptor	no	no	0.945	0.620	0.332	6e-57
Q9SA25	720	Wall-associated receptor	no	no	0.928	0.633	0.322	7e-56
Q8RY17	751	Wall-associated receptor	no	no	0.934	0.611	0.321	2e-54
Q9S9M1	731	Wall-associated receptor	no	no	0.947	0.636	0.312	1e-53
Q8GXQ3	642	Wall-associated receptor	no	no	0.953	0.728	0.325	2e-53

>sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1

 Score =  275 bits (704), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 183/493 (37%), Positives = 270/493 (54%), Gaps = 50/493 (10%)

Query: 30  RPGCEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSVSSPQLLFGINIEVFNISIED 87
           R  C+ +CG+V+V YPFG   P C    D+ F L CN      +L FG N+ V N+S+  
Sbjct: 26  RKECQTRCGNVAVEYPFGTS-PGCYYPGDESFNLTCNEQ---EKLFFG-NMPVINMSL-S 79

Query: 88  GTMIGSIWTAQRCYNDLGG-CNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDL-V 145
           G +   +  ++ CY+  G   +Y   R  LG   F  S+  N+ T  GC++YA++    V
Sbjct: 80  GQLRVRLVRSRVCYDSQGKQTDYIAQRTTLGN--FTLSEL-NRFTVVGCNSYAFLRTSGV 136

Query: 146 GSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCD 205
             + +GCISIC  +SA     SCSG GCC  P+P+    + V   S +NH  +  F PC 
Sbjct: 137 EKYSTGCISIC--DSATTKNGSCSGEGCCQIPVPRGYSFVRVKPHSFHNHPTVHLFNPCT 194

Query: 206 YAFLADETFNLLDFQ-LSDYDK----SSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCD 260
           YAFL ++   + DF  L D +     ++    ++W + +  C   +   V  CG N+ C 
Sbjct: 195 YAFLVED--GMFDFHALEDLNNLRNVTTFPVVLDWSIGDKTCKQVEYRGV--CGGNSTCF 250

Query: 261 YSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIG 316
            S  G GY C C  GF+GNPYL  GC DI+EC    R++C    TC+NT G++ C+CP G
Sbjct: 251 DSTGGTGYNCKCLEGFEGNPYLPNGCQDINECISS-RHNCSEHSTCENTKGSFNCNCPSG 309

Query: 317 MHGDGKVSC------QGFRITTIAAVIGAAIFTVTVGILAFIACRERRK----KRNFF-- 364
              D   SC      + FR T I          + +GI       + RK    ++ FF  
Sbjct: 310 YRKDSLNSCTRKVRPEYFRWTQIFLGTTIGFSVIMLGISCLQQKIKHRKNTELRQKFFEQ 369

Query: 365 NNGGMILKHQR--------VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQV 416
           N GGM+++           V+IF+E  + +AT  Y +S  LG+GG G+VY+G+L D++ V
Sbjct: 370 NGGGMLIQRVSGAGPSNVDVKIFTEKGMKEATNGYHESRILGQGGQGTVYKGILPDNSIV 429

Query: 417 AVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHH 476
           A+KK +  ++ +V Q F +E+ ++SQINH+NVVK+LG CL+T+VPLLVYEF+++GTLF H
Sbjct: 430 AIKKARLGNRSQVEQ-FINEVLVLSQINHRNVVKVLGCCLETEVPLLVYEFINSGTLFDH 488

Query: 477 IHSKSSQVLKTWK 489
           +H        TW+
Sbjct: 489 LHGSLYDSSLTWE 501

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score =  248 bits (633), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 185/524 (35%), Positives = 263/524 (50%), Gaps = 64/524 (12%)

Query: 11  MLWLMLLLSWPAAASSSNA-RPGCEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSV 67
            L ++  L++       +  R  C+ KCG+V++ YPFGI    C    D  F L C   V
Sbjct: 8   FLVVIFFLAYTQLVKGQHQPREDCKLKCGNVTIEYPFGIS-TGCYYPGDDNFNLTC--VV 64

Query: 68  SSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTR 127
               LLFGI I+V NIS   G +         CY      N T +   LG   F  S + 
Sbjct: 65  EEKLLLFGI-IQVTNIS-HSGHVSVLFERFSECYEQKNETNGTALGYQLG-SSFSLS-SN 120

Query: 128 NKLTAFGCDTYAYMGDLVGSFWS-GCISICNNESAKITENSCSGIGCCHT-----PLPKS 181
           NK T  GC+  + +       +S GC+S+CN++        C+G+GCC T     P    
Sbjct: 121 NKFTLVGCNALSLLSTFGKQNYSTGCLSLCNSQPE--ANGRCNGVGCCTTEDFSVPFDSD 178

Query: 182 TKSL-NVTLRSAYNHS------RLGNFMPCDYAFLA-DETFNLLDFQLSDYDKSSSNAK- 232
           T    +V LR+  N+S       +  F PC YAFL  D  FN       D  K   N + 
Sbjct: 179 TFQFGSVRLRNQVNNSLDLFNTSVYQFNPCTYAFLVEDGKFNF------DSSKDLKNLRN 232

Query: 233 -------IEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--G 283
                  ++W +    C  +Q  +   CG N++C  S    GY C C  G+ GNPY   G
Sbjct: 233 VTRFPVALDWSIGNQTC--EQAGSTRICGKNSSCYNSTTRNGYICKCNEGYDGNPYRSEG 290

Query: 284 CHDIDECKEKERYHCEG--TCKNTFGNYTCDCPIGMHGDGKVSCQ--GFRITTIAAVIGA 339
           C DIDEC   + ++C    TC+N  G + C CP G   +  +SC    ++ T I  VI  
Sbjct: 291 CKDIDECI-SDTHNCSDPKTCRNRDGGFDCKCPSGYDLNSSMSCTRPEYKRTRIFLVIII 349

Query: 340 AIFTVTVGILAFIACRERRK----KRNFF--NNGGMILKHQR--------VRIFSEAELI 385
            +  + +  +      ++RK    +R FF  N GGM+++            +IF+E  + 
Sbjct: 350 GVLVLLLAAICIQHATKQRKYTKLRRQFFEQNGGGMLIQRLSGAGLSNIDFKIFTEEGMK 409

Query: 386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH 445
           +AT  YD+S  LG+GG G+VY+G+L D+T VA+KK + AD  +V Q F HE+ ++SQINH
Sbjct: 410 EATNGYDESRILGQGGQGTVYKGILPDNTIVAIKKARLADSRQVDQ-FIHEVLVLSQINH 468

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           +NVVKILG CL+T+VPLLVYEF++NGTLF H+H        TW+
Sbjct: 469 RNVVKILGCCLETEVPLLVYEFITNGTLFDHLHGSIFDSSLTWE 512

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score =  248 bits (632), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 173/518 (33%), Positives = 264/518 (50%), Gaps = 58/518 (11%)

Query: 12  LWLMLLLSWPAAASSSNARP--GCEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSV 67
           L+LM +  + A      A+P   C+ +CGDV + YPFGI    C    D  F + C    
Sbjct: 6   LFLMAIFFYLAYTQLVKAQPRDDCQTRCGDVPIDYPFGIS-TGCYYPGDDSFNITCEED- 63

Query: 68  SSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTR 127
             P +L   NIEV N +   G + G I  +  CY+     ++  +   L    F      
Sbjct: 64  -KPNVLS--NIEVLNFN-HSGQLRGLIPRSTVCYDQQTNNDFESLWFRLDNLSFS---PN 116

Query: 128 NKLTAFGCDTYAYMGDL-VGSFWSGCISICNNESAKITENSCSGIGCCHT--PLPKSTKS 184
           NK T  GC+ +A +    + ++ +GC+S+C+        + C+G+GCC T   +P  +  
Sbjct: 117 NKFTLVGCNAWALLSTFGIQNYSTGCMSLCDTPPPP--NSKCNGVGCCRTEVSIPLDSHR 174

Query: 185 LNVTLRSAYNHSRLGNFMPCDYAFLA-DETFNLLDFQ-LSDYDKSSS-NAKIEWVVKEGK 241
           +        N + + +F PC YAF   D  FN    + L D    +     ++W +    
Sbjct: 175 IETQPSRFENMTSVEHFNPCSYAFFVEDGMFNFSSLEDLKDLRNVTRFPVLLDWSIGNQT 234

Query: 242 CPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCE 299
           C      N+  CG N+ C  S  G+GY C C  GF GNPYL  GC DI+EC  +  ++C 
Sbjct: 235 CEQVVGRNI--CGGNSTCFDSTRGKGYNCKCLQGFDGNPYLSDGCQDINECTTR-IHNCS 291

Query: 300 --GTCKNTFGNYTCDCPIGMH-GDGKVSC----------QGFRITTIAAVIGAAIFTVTV 346
              TC+NT G++ C CP G       +SC           G+    +   IG  I  +T+
Sbjct: 292 DTSTCENTLGSFHCQCPSGSDLNTTTMSCIDTPKEEPKYLGWTTVLLGTTIGFLIILLTI 351

Query: 347 GILAFIACRERRKK-----RNFF--NNGGMILKHQR--------VRIFSEAELIKATKNY 391
              ++I  + R +K     + FF  N GGM+++           V+IF+E  + +AT  Y
Sbjct: 352 ---SYIQQKMRHRKNTELRQQFFEQNGGGMLIQRLSGAGPSNVDVKIFTEEGMKEATDGY 408

Query: 392 DKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           ++S  LG+GG G+VY+G+L D++ VA+KK +  D+ +V Q F +E+ ++SQINH+NVVK+
Sbjct: 409 NESRILGQGGQGTVYKGILQDNSIVAIKKARLGDRSQVEQ-FINEVLVLSQINHRNVVKL 467

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           LG CL+T+VPLLVYEF+S+GTLF H+H        TW+
Sbjct: 468 LGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWE 505

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score =  231 bits (590), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 167/498 (33%), Positives = 250/498 (50%), Gaps = 56/498 (11%)

Query: 30  RPG--CEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSVSSPQLLFGINIEVFNISI 85
           +PG  C+ KCG++++ YPFGI    C    ++ F + C      P +L  I +  FN S 
Sbjct: 27  QPGENCQNKCGNITIEYPFGISS-GCYYPGNESFSITCKED--RPHVLSDIEVANFNHS- 82

Query: 86  EDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDL- 144
             G +   +  +  CY++ G     D    L           NKLTA GC+  + +    
Sbjct: 83  --GQLQVLLNRSSTCYDEQGKKTEEDSSFTLENLSLS---ANNKLTAVGCNALSLLDTFG 137

Query: 145 VGSFWSGCISICNNESAKITENSCSGIGCCHTPL--PKSTKSLNVTLRSAYNHSRLGNFM 202
           + ++ + C+S+C  +S    +  C+G GCC   +  P  + +   T     + +   +F 
Sbjct: 138 MQNYSTACLSLC--DSPPEADGECNGRGCCRVDVSAPLDSYTFETTSGRIKHMTSFHDFS 195

Query: 203 PCDYAFLA-DETFNLLDFQ--LSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNC 259
           PC YAFL  D+ FN    +  L+  +       ++W V    C  +Q  +   CG N+ C
Sbjct: 196 PCTYAFLVEDDKFNFSSTEDLLNLRNVMRFPVLLDWSVGNQTC--EQVGSTSICGGNSTC 253

Query: 260 DYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEK---ERYHCEG--TCKNTFGNYTCD 312
             S    GY C C  GF GNPYL  GC D++EC       R++C    TC+N  G + C 
Sbjct: 254 LDSTPRNGYICRCNEGFDGNPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYCK 313

Query: 313 CPIGMHGDGK-VSCQ--GFRITTIAAVIGAAIFTVTVGILAFIACRERRKK--------R 361
           C  G   D   +SC+   F  TTI  V       + +G+    AC ++R K         
Sbjct: 314 CQSGYRLDTTTMSCKRKEFAWTTILLVTTIGFLVILLGV----ACIQQRMKHLKDTKLRE 369

Query: 362 NFF--NNGGMILKHQR--------VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLS 411
            FF  N GGM+ +           V+IF+E  + KAT  Y +S  LG+GG G+VY+G+L 
Sbjct: 370 QFFEQNGGGMLTQRLSGAGPSNVDVKIFTEDGMKKATNGYAESRILGQGGQGTVYKGILP 429

Query: 412 DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG 471
           D++ VA+KK +  D  +V Q F +E+ ++SQINH+NVVK+LG CL+T+VPLLVYEF++NG
Sbjct: 430 DNSIVAIKKARLGDSSQVEQ-FINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITNG 488

Query: 472 TLFHHIHSKSSQVLKTWK 489
           TLF H+H        TW+
Sbjct: 489 TLFDHLHGSMIDSSLTWE 506

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score =  223 bits (567), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 259/518 (50%), Gaps = 95/518 (18%)

Query: 31  PGCEEKCGDVSVPYPFGIDDPKC--AMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDG 88
           P C EKCG+V++ YPFG   P C  A D  F L+C       + LF   +EV  IS    
Sbjct: 26  PRCPEKCGNVTLEYPFGFS-PGCWRAEDPSFNLSCVN-----ENLFYKGLEVVEIS--HS 77

Query: 89  TMIGSIWTAQR-CYNDLGGCNYTDVRIDLGEGPFKFSDT-------RNKLTAFGCDTYAY 140
           + +  ++ A   CYN  G            +G + +S+         N +TA GC++YA+
Sbjct: 78  SQLRVLYPASYICYNSKG---------KFAKGTYYWSNLGNLTLSGNNTITALGCNSYAF 128

Query: 141 M---GDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSR 197
           +   G    S   GCIS C+  S +     C+G GCC  P+P     L V    +Y    
Sbjct: 129 VSSNGTRRNSV--GCISACDALSHE-ANGECNGEGCCQNPVPAGNNWLIV---RSYRFDN 182

Query: 198 LGNFMP-----CDYAFLADETFNLLDFQLSDYDKSSS--------NAKIEWVVKEGKCPD 244
             +  P     C YAFL +       F+ +  DK S            ++W ++   C  
Sbjct: 183 DTSVQPISEGQCIYAFLVENG----KFKYNASDKYSYLQNRNVGFPVVLDWSIRGETCGQ 238

Query: 245 DQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEK---ERYHCE 299
                  +CG N  C  S +G GY C CK GFQGNPYL  GC DI+EC       +++C 
Sbjct: 239 VGEK---KCGVNGICSNSASGIGYTCKCKGGFQGNPYLQNGCQDINECTTANPIHKHNCS 295

Query: 300 G--TCKNTFGNYTCDCPIGMHGDG-------KVSCQGFRITTIAAVIGAAI-FTVTVGIL 349
           G  TC+N  G++ C+C      +        K + +    TTI  V+G  I F V   IL
Sbjct: 296 GDSTCENKLGHFRCNCRSRYELNTTTNTCKPKGNPEYVEWTTI--VLGTTIGFLV---IL 350

Query: 350 AFIACRERRKK--------RNFF--NNGGMILKHQR--------VRIFSEAELIKATKNY 391
             I+C E + K        + FF  N GGM+++           V+IF+E  + +AT  Y
Sbjct: 351 LAISCIEHKMKNTKDTELRQQFFEQNGGGMLMQRLSGAGPSNVDVKIFTEEGMKEATDGY 410

Query: 392 DKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           D++  LG+GG G+VY+G+L D++ VA+KK +  D  +V Q F +E+ ++SQINH+NVVK+
Sbjct: 411 DENRILGQGGQGTVYKGILPDNSIVAIKKARLGDNSQVEQ-FINEVLVLSQINHRNVVKL 469

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           LG CL+T+VPLLVYEF+S+GTLF H+H        TW+
Sbjct: 470 LGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWE 507

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 172/517 (33%), Positives = 252/517 (48%), Gaps = 53/517 (10%)

Query: 12  LWLMLLLSWPAAASSSNARPG-CEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSP 70
           L + +L  +    SS+   P  C   CG++S+P+PFGI    C ++ ++ + CN + S P
Sbjct: 13  LAISVLSLFINGVSSARQPPDRCNRVCGEISIPFPFGIGGKDCYLNPWYEVVCNSTNSVP 72

Query: 71  QLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKL 130
             L  IN E+ NIS+     I +  T+  C                G+G   F   +N L
Sbjct: 73  -FLSRINRELVNISLNGVVHIKAPVTSSGCSTGTSQPLTPPPLNVAGQGSPYFLTDKNLL 131

Query: 131 TAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENS---CSGIGCCHTPLPKSTK---S 184
            A GC   A M  +     S C S CN  ++   E     C+G  CC T +P+      S
Sbjct: 132 VAVGCKFKAVMAGITSQITS-CESSCNERNSSSQEGRNKICNGYKCCQTRIPEGQPQVIS 190

Query: 185 LNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKSSSNAKIE--WVVKEGKC 242
           +++ +    N +  G    C  AFL  + ++ L+    +       A +E  W       
Sbjct: 191 VDIEIPQGNNTTGEGG---CRVAFLTSDKYSSLNVTEPEKFHGHGYAAVELGWFFDTSDS 247

Query: 243 PDDQNSNVYRCGDNT--------NCDYSE-NGEGYR-CLC-KPGFQGNPYL--GCHDIDE 289
            D Q  +     D T        +C Y   +G  YR C C  PG++GNP+L  GC D+DE
Sbjct: 248 RDTQPISCKNASDTTPYTSDTRCSCSYGYFSGFSYRDCYCNSPGYKGNPFLPGGCVDVDE 307

Query: 290 CK-EKERYHC-EGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVG 347
           CK +  R  C + +C N  G +  DC        K   QG        +IG+A+     G
Sbjct: 308 CKLDIGRNQCKDQSCVNLPGWF--DCQPKKPEQLKRVIQG-------VLIGSALLLFAFG 358

Query: 348 ILAFIACRERRKK----RNFFN-NGGMILKHQRVR---------IFSEAELIKATKNYDK 393
           I       ++R+K    R FF  NGGM+LK Q  R         IFS  EL KAT N++K
Sbjct: 359 IFGLYKFVQKRRKLIRMRKFFRRNGGMLLKQQLARKEGNVEMSRIFSSHELEKATDNFNK 418

Query: 394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           +  LG+GG G+VY+G+L D   VAVK+ K  D+ RV +EF +E+ +++QINH+N+VK+LG
Sbjct: 419 NRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRV-EEFINEVVVLAQINHRNIVKLLG 477

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
            CL+T+VP+LVYEFV NG L   +H +S     TW++
Sbjct: 478 CCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEV 514

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SA25|WAKLG_ARATH Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1

 Score =  218 bits (556), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 166/514 (32%), Positives = 256/514 (49%), Gaps = 58/514 (11%)

Query: 5   IEKIMSMLWLMLLLSWPAAASSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCN 64
           +++ + ++ L+ +  + AA++   A   C + CG+VSVPYPFGI    C  +K+F + C 
Sbjct: 5   VKRFLVVMLLLRICEYAAASTFPLALRNCSDHCGNVSVPYPFGIGK-GCYKNKWFEIVCK 63

Query: 65  RSVSSPQLLFGINI----------EVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRI 114
            S     +L    I          + F+IS+ +   I S      C N  G   Y+   +
Sbjct: 64  SSSDQQPILLLPRIRRAVTSFNLGDPFSISVYNKFYIQSPLKHSGCPNRDG---YSSSSL 120

Query: 115 DLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNE--SAKITENSCSGIG 172
           +L   PF  S+  NK TA GC+  A+M ++ G    GC + C NE  S K    SC G  
Sbjct: 121 NLKGSPFFISEN-NKFTAVGCNNKAFM-NVTGLQIVGCETTCGNEIRSYKGANTSCVGYK 178

Query: 173 CCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDF---QLSDYDKSSS 229
           CC   +P     L + +  A       N   C  AFL   T +   F   +L +Y + ++
Sbjct: 179 CCQMTIPPL---LQLQVFDATVEKLEPNKQGCQVAFLTQFTLSGSLFTPPELMEYSEYTT 235

Query: 230 NAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDI 287
             ++EW +          S    C  NT  +     + Y+C C  G++GNPY+  GC DI
Sbjct: 236 -IELEWRLDLSY----MTSKRVLCKGNTFFE-----DSYQCSCHNGYEGNPYIPGGCQDI 285

Query: 288 DECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTV 346
           DEC++     C +  C N  G+Y C+           +       T+++ +   IF + +
Sbjct: 286 DECRDPHLNKCGKRKCVNVLGSYRCE----------KTWPAILSGTLSSGLLLLIFGMWL 335

Query: 347 GILAFIACRERRKKRNFFN-NGGMILKHQ---------RVRIFSEAELIKATKNYDKSNF 396
              A    +  ++KR FF  NGG++L+ Q         R ++FS  +L  AT  ++ S  
Sbjct: 336 LCKANRKRKVAKQKRKFFQRNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRI 395

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+GG G+VY+G+L D   VAVKK K A K    +EF +E+ ++SQINH+NVVKILG CL
Sbjct: 396 LGQGGQGTVYKGMLEDGMIVAVKKSK-ALKEENLEEFINEIILLSQINHRNVVKILGCCL 454

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           +T+VP+LVYEF+ N  LF H+H+ S     +W++
Sbjct: 455 ETEVPILVYEFIPNRNLFDHLHNPSEDFPMSWEV 488

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 277/523 (52%), Gaps = 64/523 (12%)

Query: 14  LMLLLSWP---AAASSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSP 70
           L L ++ P    A S  ++   C   CG + +P+PFGI    C ++ ++ + CN + S  
Sbjct: 15  LTLFINGPLITTAQSPPSSSTSCNRICGGIEIPFPFGIGRRDCFLNDWYEVVCNSTTSGK 74

Query: 71  QL---LFGINIEVFNISIEDGTMIGSIWTAQRCYNDL--GGCNYTDVR---IDL-GEG-P 120
            L   L+ IN E+ +I++   + I S +      + +   GC+   V+   ++L G+G P
Sbjct: 75  SLAPFLYKINRELVSITLR--SSIDSSYGVVHIKSPVTSSGCSQRPVKPLPLNLTGKGSP 132

Query: 121 FKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPK 180
           F  +D+ N+L + GCD  A + D + S  +GC S C+ + +++ +  C G  CC   +P 
Sbjct: 133 FFITDS-NRLVSVGCDNRALITD-IESQITGCESSCDGDKSRL-DKICGGYTCCQAKIPA 189

Query: 181 S-TKSLNVTLRSAY-NHSRLGNFMPCDYAFLADETFNLLDFQLSD--YDKSSSNAKIEW- 235
              + + V L S+  N ++ GN   C  AFL +ET++  +    +  Y    +  ++ W 
Sbjct: 190 DRPQVIGVDLESSGGNTTQGGN---CKVAFLTNETYSPANVTEPEQFYTNGFTVIELGWY 246

Query: 236 -------VVKEGKCPDDQNSNVYRCGDNTNCDYSE-NGEGY-RCLC-KPGFQGNPYL--G 283
                  +     C +   + +Y    +  C+Y   +G GY  C C + G++GNPYL  G
Sbjct: 247 FDTSDSRLTNPVGCVNLTETGIYTSAPSCVCEYGNFSGFGYSNCYCNQIGYRGNPYLPGG 306

Query: 284 CHDIDECKE-KERYHC-EGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAI 341
           C DIDEC+E K    C E TC N  G++ C+    ++G GK+     +      V+G  +
Sbjct: 307 CIDIDECEEGKGLSSCGELTCVNVPGSWRCE----LNGVGKI-----KPLFPGLVLGFPL 357

Query: 342 FTVTVGI---LAFIACRERRKKRNFF--NNGGMILKHQRV---------RIFSEAELIKA 387
             + +GI   + F+  R +  ++  F   NGG++LK Q           +IFS  EL KA
Sbjct: 358 LFLVLGIWGLIKFVKKRRKIIRKRMFFKRNGGLLLKQQLTTRGGNVQSSKIFSSKELEKA 417

Query: 388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
           T N++ +  LG+GG G+VY+G+L D   VAVK+ K  D+ +V +EF +E+G++SQINH+N
Sbjct: 418 TDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKV-EEFINEVGVLSQINHRN 476

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           +VK++G CL+T+VP+LVYE + NG LF  +H  S     TW +
Sbjct: 477 IVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTWDV 519

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Required during plant's response to pathogen infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M1|WAKLE_ARATH Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 255/537 (47%), Gaps = 72/537 (13%)

Query: 8   IMSMLWLMLLLSWPAAA-----SSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLN 62
           + S+L L L+    AA      +S N+   C   CG +S+P+PFGI    C ++ ++ + 
Sbjct: 12  VASVLTLQLMNGSSAATPPPPPNSKNSSTSCNRTCGGISIPFPFGIGGKDCYLNGWYEVV 71

Query: 63  CNRSVSSPQ-----LLFGINIEVFNISIEDG--------------TMIG-SIWTAQRCYN 102
           CN + S         L  IN EV NIS+ +G              T +G S  T+Q    
Sbjct: 72  CNATTSGSSGTTVPFLSRINREVVNISLPEGNNEQYGVVHIKGPVTSLGCSSNTSQVPQK 131

Query: 103 DLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNE--S 160
            L   N T      G+G   F    N+L A GC T A M D+      GC S C +   S
Sbjct: 132 SLPDLNVT------GKGSPYFITDENRLVAVGCGTKALMTDIESEIL-GCESSCKDSKSS 184

Query: 161 AKITENSCSGIGCCHTPLP-KSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDF 219
            ++T   C G  CC   +P +  +++ V + S+           C  AFL+ + ++  + 
Sbjct: 185 QEVTNLLCDGYKCCQARIPVERPQAVGVNIESSGGDG-------CKVAFLSSKRYSPSNV 237

Query: 220 QLSDYDKSSSNAKIE--WVVKEGK--------CPDDQNSNVYRCGDNTNCDYSENGE-GY 268
            + +   +     +E  W              C +   S  Y  GD+  C+Y    E  Y
Sbjct: 238 TIPEQFHAGGYVVVELGWYFATTDSRFRNPLGCINLTYSGSYLSGDSCLCEYGYFSEMSY 297

Query: 269 R-CLCKPGFQGNPYL--GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSC 325
           R C C  GF GNPYL  GC D D+CK       EGTC N  G Y CD    +    K   
Sbjct: 298 RNCYCSLGFTGNPYLRGGCIDNDDCKGPNICE-EGTCVNVPGGYRCDPKPKIIKPAKPLV 356

Query: 326 QGFRITTIAAVIGAAIFTVTVGILAFIACRERR-KKRNFFN-NGGMILKHQRV------- 376
               +  +  ++   + T+  G++ FI  R R    R FF  NGG++LK Q         
Sbjct: 357 LQGVLLGLMGLLFLVVGTL--GLIIFIKKRRRIISSRKFFKRNGGLLLKQQLTTTNDGNV 414

Query: 377 ---RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEF 433
              R+FS  EL KAT N+     LG+G  G+VY+G++ D   +AVK+ K  D+ ++ ++F
Sbjct: 415 DMSRLFSSEELKKATDNFSVKRVLGKGSQGTVYKGMMVDGKIIAVKRSKVVDEDKL-EKF 473

Query: 434 QHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
            +E+ ++SQINH+N+VK++G CL+T+VP+LVYE++ NG +F  +H +S     TW++
Sbjct: 474 INEIILLSQINHRNIVKLIGCCLETEVPILVYEYIPNGDMFKRLHDESDDYAMTWEV 530

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. May be involved in plant's response to pathogen infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8GXQ3|WAKLF_ARATH Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=2

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 261/532 (49%), Gaps = 64/532 (12%)

Query: 9   MSMLWLMLLLSWPAAAS---SSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNR 65
           +S+L L L+    AA     +SN+   C   CG VS+P+PFGI    C ++ ++ + CN 
Sbjct: 15  LSVLTLQLINGSSAATPPPPNSNSSTSCNRACGGVSIPFPFGIGK-DCYLNGWYEVICNT 73

Query: 66  SVSSPQ-----LLFGINIEVFNISIEDGTMI-------GSIWTAQRCYNDLGGCNYTDVR 113
           S S         L  IN EV NIS+ DG  +       G + +     +           
Sbjct: 74  STSGSSGTTVPFLSRINSEVVNISLPDGKKLYGVVHIKGPVTSLGCSSSSSSSQVSEMSL 133

Query: 114 IDL---GEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNE--SAKITENSC 168
            +L   G G   F    N L   GC T A M D+      GC S C +   S ++T + C
Sbjct: 134 PNLNVTGRGSPYFLTDENCLVMVGCGTKALMKDIESEIL-GCESSCEDSKSSEEVTNSKC 192

Query: 169 SGIGCCHTPLP-KSTKSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDFQLSDYDKS 227
            G  CC   +P +  + + + +    N S       C  AFL ++ +  ++    +   +
Sbjct: 193 DGYKCCQARIPLERPQVIGINIE---NTSATRGKEGCSVAFLTNKRYAPMNVTEPEQFHA 249

Query: 228 SSNAKIE--WVVKEGK--------CPDDQNSNVYRCGDNTNCDYSE-NGEGYR-CLCKPG 275
              A +E  W              C +    + Y   D  +C+Y   +G  YR C C  G
Sbjct: 250 GGYAVVELGWYFDTSDSRYRNPLGCRNMTRYSSYSSFDKCSCEYDYFSGMSYRICYCNYG 309

Query: 276 FQGNPYL--GCHDIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITT 332
           + GNPYL  GC DIDEC+    ++C EGTC N  G ++C+  I       V  QG  I+ 
Sbjct: 310 YTGNPYLRHGCIDIDECEG--HHNCGEGTCVNMPGTHSCEPKITKPEKASV-LQGVLIS- 365

Query: 333 IAAVIGAAIFTVTV-GILAFIACRER--RKKRNFFNNGGMILKHQRV---------RIFS 380
               +G  +F + + G+  FI  R R  R K  F  NGG++LK Q +         RIFS
Sbjct: 366 ----LGVLLFVLGILGLYKFIKKRTRIIRNKNFFKRNGGLLLKQQLITKNGNVDMSRIFS 421

Query: 381 EAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIV 440
             EL KAT N+  +  LG+GG G+VY+G+L++   VAVK+ K   + ++ +EF +E+ ++
Sbjct: 422 SKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKM-EEFINEVVLL 480

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH--SKSSQVLKTWKI 490
           SQINH+N+VK+LG CL+T+VP+LVYE++ NG LF  +H  S+S+    TW++
Sbjct: 481 SQINHRNIVKLLGCCLETEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEV 532

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
255573255	739	kinase, putative [Ricinus communis] gi|2	0.947	0.629	0.591	1e-161
255573259	771	serine-threonine protein kinase, plant-t	0.942	0.600	0.570	1e-154
224132156	667	predicted protein [Populus trichocarpa]	0.965	0.710	0.554	1e-153
224132160	667	predicted protein [Populus trichocarpa]	0.965	0.710	0.554	1e-153
224102953	633	predicted protein [Populus trichocarpa]	0.908	0.704	0.539	1e-135
224132202	721	predicted protein [Populus trichocarpa]	0.951	0.647	0.523	1e-132
224132144	646	predicted protein [Populus trichocarpa]	0.900	0.684	0.514	1e-130
224102957	615	predicted protein [Populus trichocarpa]	0.759	0.606	0.575	1e-124
359491931	668	PREDICTED: wall-associated receptor kina	0.822	0.604	0.497	1e-115
224132194	717	predicted protein [Populus trichocarpa]	0.938	0.642	0.443	1e-105

>gi|255573255|ref|XP_002527556.1| kinase, putative [Ricinus communis] gi|223533048|gb|EEF34808.1| kinase, putative [Ricinus communis]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/489 (59%), Positives = 352/489 (71%), Gaps = 24/489 (4%)

Query: 22  AAASSSNARPGCEEKCGDVSVPYPFGID-------DPKCAMDKYFFLNCNRSVSSPQLLF 74
           +A+S       C +KCG+V VPYPFGI+       DP C+ + +F   CN +   P+L F
Sbjct: 26  SASSPEVISDNCPDKCGNVHVPYPFGINFTSGISNDPNCSFNNFFRFTCNTTFDPPRLYF 85

Query: 75  GINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFG 134
           G N+ + NIS+E+GT+   I  A RCY+  G        I+LG GPF+FSD+RNKLT  G
Sbjct: 86  GRNMPIHNISVEEGTISVRIDAAYRCYDQTGFRRGFSQSINLGSGPFRFSDSRNKLTTIG 145

Query: 135 CDTYAYMGDLVGSFWSGCISICNNESAKIT-ENSCSGIGCCHTPLPKSTKSLNVTLRSAY 193
           CDT A M D   +F SGCIS C   S+KIT E SCSG GCC TP+PKS K+L++ L+S  
Sbjct: 146 CDTLALMEDKEETFGSGCISFC---SSKITLEGSCSGFGCCQTPIPKSIKTLSIDLQSPN 202

Query: 194 NHSRLGNFMPCDYAFLADE-TFNLLDFQLSDYDKSS-------SNAKIEWVVKEGKCPDD 245
           NHS++ NF PC++AFLADE TFN+ D QLSD   S+       S+  IEWVV+E  C   
Sbjct: 203 NHSKVLNFNPCEFAFLADERTFNVSDLQLSDIPFSAAINESVKSDVVIEWVVREETCETA 262

Query: 246 Q---NSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCEG 300
           Q   N N Y CG NTNC YS+NG GYRC CK GF+GNPYL  GC DIDEC+E E+Y C+G
Sbjct: 263 QSSSNPNGYACGSNTNCLYSDNGNGYRCSCKDGFKGNPYLPQGCQDIDECQEPEKYKCDG 322

Query: 301 TCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKK 360
           TCKNT G YTC CP+GM GDGKV C+GF IT IAA+IG+ +  + + +L  I  + RRK+
Sbjct: 323 TCKNTIGGYTCQCPLGMRGDGKVGCRGFHITNIAAIIGSILSVIIIAVLVIIIYKRRRKE 382

Query: 361 RNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK 420
           RNF  NGGM+LKHQRVRIFSEAEL KATKNYD S  LGEGGFG VY+GVL+D+TQ+AVKK
Sbjct: 383 RNFLENGGMLLKHQRVRIFSEAELAKATKNYDPSQLLGEGGFGYVYKGVLADNTQIAVKK 442

Query: 421 PKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           PK+ DK ++ QE+QHE+GIVSQ+NHKNVVKILGLCL+TKVPLLVYEF+SNGTLFHHIH K
Sbjct: 443 PKDIDKAQIKQEYQHEIGIVSQVNHKNVVKILGLCLETKVPLLVYEFISNGTLFHHIHHK 502

Query: 481 SSQVLKTWK 489
            SQ+L  WK
Sbjct: 503 RSQILANWK 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573259|ref|XP_002527558.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533050|gb|EEF34810.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/470 (57%), Positives = 342/470 (72%), Gaps = 7/470 (1%)

Query: 25  SSSNARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNIS 84
           S SN +P C+EKCG+VSV YPFGID+P CA +++F L CN S + P+L+ G NI V +IS
Sbjct: 74  SLSNVKPDCQEKCGNVSVFYPFGIDNPDCAFNEFFLLTCNYSYT-PELMIG-NIPVLDIS 131

Query: 85  IEDGTMIGSIWTAQRCYNDLGGCNYT-DVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGD 143
           +++G     I  A  CY+   G  Y+ D  I LG+GPF+FSD RNKLTA GCD+ A+M D
Sbjct: 132 VQEGVFSVDIENAYECYDSRSGQIYSFDQIITLGDGPFRFSDIRNKLTATGCDSLAFMTD 191

Query: 144 LVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMP 203
             G F SGC+S+CN       E+SC G GCC T +P+S K+LN++L S  +   + +F P
Sbjct: 192 AEGDFGSGCVSLCNGPVNFTKESSCGGYGCCQTSIPQSLKTLNISLTSPNSRMNVWDFNP 251

Query: 204 CDYAFLADE-TFNL--LDFQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCD 260
           C +AFLAD+  FN+  L+   S+ +  SS + IEWVV+E  C D   S+ Y C  NT+C 
Sbjct: 252 CGFAFLADQRNFNVSNLNLTYSEDEFISSTSVIEWVVEEKTCGDANKSDSYACRRNTDCI 311

Query: 261 YSENGEGYRCLCKPGFQGNPYL-GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHG 319
           YSENG+GYRC CK GF GNPY+ GC DIDEC +  +Y C+GTCKNTFGNYTC CP+GM G
Sbjct: 312 YSENGQGYRCSCKEGFAGNPYIEGCEDIDECNDPLKYPCQGTCKNTFGNYTCSCPLGMRG 371

Query: 320 DGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIF 379
           DGKV C+GFRIT +A V+GA IF   +G+L  I  ++ +K++NF  NGG++LKHQRVRIF
Sbjct: 372 DGKVGCRGFRITALATVVGAFIFAAIIGLLVVIIWKKHKKQKNFLENGGVLLKHQRVRIF 431

Query: 380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGI 439
            EAEL KAT  Y  SNFLGEGGFG VY+GVL+D TQVAVK+PK+ +K++++QEFQ E+GI
Sbjct: 432 KEAELAKATNYYTTSNFLGEGGFGCVYKGVLADGTQVAVKRPKDIEKMKMNQEFQKEIGI 491

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           VSQ+NH NVVK+LGLCL+T VPLLVYEFVSNG L+ HIH K SQ+L  WK
Sbjct: 492 VSQVNHINVVKVLGLCLETNVPLLVYEFVSNGNLYQHIHQKRSQLLTAWK 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132156|ref|XP_002328199.1| predicted protein [Populus trichocarpa] gi|222837714|gb|EEE76079.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/487 (55%), Positives = 348/487 (71%), Gaps = 13/487 (2%)

Query: 14  LMLLLSWPAAASSS--NARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQ 71
           +MLLL WP AA+++  + +PGC++KCG+VSVPYPFGI +P+CAM+  FFLNC+     P+
Sbjct: 2   MMLLLLWPVAAATARPDVKPGCQDKCGNVSVPYPFGIGEPRCAMNDDFFLNCSDE-GHPK 60

Query: 72  LLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCN-YTDVRIDLGEGPFKFSDTRNKL 130
           L FG NI   NIS+ +GT+  S +T   CY+  G    Y    + LG GPF +SDTRN  
Sbjct: 61  LWFGGNIPARNISVLEGTITASSYTPFNCYDRTGSSTEYYSPPVILGPGPFMYSDTRNIF 120

Query: 131 TAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLR 190
            A GCDTYA++ +   ++ + C+S+C         N CSG GCC T +PK  KSL+++L 
Sbjct: 121 VAIGCDTYAWIINEEFTYGAACLSLCTEYVNMSDGNPCSGSGCCQTSIPKGLKSLDISLF 180

Query: 191 SAYNHSRLGNFMPCDYAFLADET-FNLLDFQLSDYDKSSSNAK-----IEWVVKEGKCPD 244
           S YN++ + +F  C +AF+ D++ F + D+QLS   K  ++A      IEWVVK   C  
Sbjct: 181 SFYNYTNVSDFNLCGFAFIVDKSSFKISDWQLSRKPKYGNDAYRTDIVIEWVVKNETCEQ 240

Query: 245 DQ-NSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCEGT 301
            + N++ Y CG N NC Y E+G+GYRCLC  GF+GNPYL  GC DIDECK  E Y C+GT
Sbjct: 241 AKANASAYACGANANCSYPESGQGYRCLCNEGFEGNPYLQEGCQDIDECKNPESYPCQGT 300

Query: 302 CKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKR 361
           CKNT GNY C CP+GM+GDGK  CQG  I T+ A IGAAI  V + +L ++ C++R+K R
Sbjct: 301 CKNTMGNYKCRCPLGMYGDGKKGCQGLGIITLIAAIGAAILLVIICVLLYMMCKKRKKDR 360

Query: 362 NFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKP 421
           NF  NGGM+LKHQRVRIFSEAEL KATKNYD    LGEGGFGSVYRGVL+D+ QVAVKK 
Sbjct: 361 NFRENGGMVLKHQRVRIFSEAELEKATKNYDDDQKLGEGGFGSVYRGVLADNAQVAVKKF 420

Query: 422 KEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           K  DK ++++EFQ+EMG+VSQ+NHKNVVK+LGLCL+TKVPLLVYEF+SNGTLF HIH K+
Sbjct: 421 KGVDKAQMNEEFQNEMGVVSQVNHKNVVKLLGLCLETKVPLLVYEFISNGTLFKHIHDKT 480

Query: 482 SQVLKTW 488
           SQ+L +W
Sbjct: 481 SQLLASW 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132160|ref|XP_002328200.1| predicted protein [Populus trichocarpa] gi|222837715|gb|EEE76080.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/487 (55%), Positives = 347/487 (71%), Gaps = 13/487 (2%)

Query: 14  LMLLLSWPAAASSS--NARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQ 71
           +MLLL WP AA+++  + +PGC++KCG+VSVPYPFGI +P+CAM+  FFLNC+     P+
Sbjct: 2   MMLLLFWPVAAATARPDVKPGCQDKCGNVSVPYPFGIGEPRCAMNDDFFLNCSDE-GHPK 60

Query: 72  LLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCN-YTDVRIDLGEGPFKFSDTRNKL 130
           L FG NI   NIS+ +GT+  S +T   CY+  G    Y    + LG GPF +SDTRN  
Sbjct: 61  LWFGGNIPARNISVLEGTITASSYTPFNCYDRTGSSTEYYSPPVILGPGPFMYSDTRNIF 120

Query: 131 TAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLR 190
            A GCDTYA++ +   ++ + C+S+C         N CSG GCC T +PK  KSL+++L 
Sbjct: 121 VAIGCDTYAWIINEEFTYGAACLSLCTEYVNMSDGNPCSGSGCCQTSIPKGLKSLDISLF 180

Query: 191 SAYNHSRLGNFMPCDYAFLADET-FNLLDFQLSDYDKSSSNAK-----IEWVVKEGKCPD 244
           S YN++ + +F  C +AF+ D++ F + D+QLS   K  ++A      IEWVVK   C  
Sbjct: 181 SFYNYTNVSDFNLCGFAFIVDKSSFKISDWQLSRKPKYGNDAYRTDIVIEWVVKNETCEQ 240

Query: 245 DQ-NSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCEGT 301
            + N++ Y CG N NC Y E+G+GYRCLC  GF+GNPYL  GC DIDECK  E Y C+GT
Sbjct: 241 AKANASAYACGANANCSYPESGQGYRCLCNEGFEGNPYLQEGCQDIDECKNPESYPCQGT 300

Query: 302 CKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKR 361
           CKNT GNY C CP+GM+GDGK  CQG  I T+ A IGAAI  V + +L ++ C +R+K R
Sbjct: 301 CKNTMGNYKCRCPLGMYGDGKKGCQGLGIITLIAAIGAAILLVIICVLLYMMCEKRKKDR 360

Query: 362 NFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKP 421
           NF  NGGM+LKHQRVRIFSEAEL KATKNYD    LGEGGFGSVYRGVL+D+ QVAVKK 
Sbjct: 361 NFRENGGMVLKHQRVRIFSEAELEKATKNYDDDQKLGEGGFGSVYRGVLADNAQVAVKKF 420

Query: 422 KEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           K  DK ++++EFQ+EMG+VSQ+NHKNVVK+LGLCL+TKVPLLVYEF+SNGTLF HIH K+
Sbjct: 421 KGVDKAQMNEEFQNEMGVVSQVNHKNVVKLLGLCLETKVPLLVYEFISNGTLFKHIHDKT 480

Query: 482 SQVLKTW 488
           SQ+L +W
Sbjct: 481 SQLLASW 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102953|ref|XP_002312868.1| predicted protein [Populus trichocarpa] gi|222849276|gb|EEE86823.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/465 (53%), Positives = 317/465 (68%), Gaps = 19/465 (4%)

Query: 32  GCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSP-QLLFGINIEVFNISIEDGTM 90
           GC+E+CGDV VPYPFGI + +CAM++ FFL+CN +     +L FG NI   NIS+ +GT+
Sbjct: 1   GCQERCGDVIVPYPFGIGEQRCAMNENFFLHCNSTDDGHHELWFGENIPARNISLLNGTV 60

Query: 91  IGSIWTAQRCYNDLG-GCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFW 149
              I  +  CYN  G      +  I LG GPF FSD+RN  TA GCDT A + ++  +F 
Sbjct: 61  TVGIDPSLYCYNKSGRQSQLFNQSISLGSGPFTFSDSRNMFTAVGCDTIAMVTNMDATFG 120

Query: 150 SGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFL 209
           + C+S+C         NSCSG GCC T +PK  KSL++T++S  NH+ +  F PC +AFL
Sbjct: 121 AACLSLCTRNVTMSKNNSCSGSGCCQTSIPKGLKSLDITIQSFNNHTDVFEFNPCGFAFL 180

Query: 210 AD-ETFNLLDFQLSDYDK--SSSNAKIEWVVKEGKCPDDQ-NSNVYRCGDNTNCDYSENG 265
            D ++ +L D+ LS   K   +SN  IEWV +   C   Q N + Y CG NTNC+YS+NG
Sbjct: 181 EDKDSLDLSDWPLSRTPKPNDTSNVVIEWVAQTETCEKAQANKSSYACGINTNCNYSDNG 240

Query: 266 EGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKV 323
           +GYRC C  GF+GNPYL  GC DIDECK  E Y C G C NT G+Y C C +GMHGDGKV
Sbjct: 241 QGYRCACNEGFEGNPYLEKGCQDIDECKYPETYTCYGKCHNTIGDYECKCSLGMHGDGKV 300

Query: 324 SCQGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAE 383
              GF        +GA +  V + +L F+   +RRK +NF  NGGM+LKHQRVRIFSEAE
Sbjct: 301 ---GF--------VGAIVSLVIICLLLFMILSKRRKDKNFRENGGMVLKHQRVRIFSEAE 349

Query: 384 LIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
           L KAT NYD    LGEGGFGSVY+GVL+D+T VAVKK K  DK +++++FQHE+ +VSQ+
Sbjct: 350 LTKATNNYDDDKKLGEGGFGSVYKGVLADNTVVAVKKSKGVDKAQMNEDFQHEICVVSQV 409

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTW 488
           NHKNVVK+LGLCL+TKVPLLVYEF+SNGTLF HIH K SQVL +W
Sbjct: 410 NHKNVVKLLGLCLETKVPLLVYEFISNGTLFKHIHDKRSQVLASW 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132202|ref|XP_002328210.1| predicted protein [Populus trichocarpa] gi|222837725|gb|EEE76090.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/497 (52%), Positives = 327/497 (65%), Gaps = 30/497 (6%)

Query: 15  MLLLSWPAAASSSNA---RPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQ 71
           M LL  PAAAS++ A   +P C++KCGDVSVPYPFGI +P+CAM+  F LNC    S  +
Sbjct: 1   MSLLLCPAAASTARAPDVKPLCQDKCGDVSVPYPFGIREPRCAMNDDFILNC---TSGAE 57

Query: 72  LLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNYTDV---RIDLGEGPFKFSDTRN 128
           LLFG NI V NIS  +GT+   I  A  CY+  G  N TD     IDLG GP  FSDTRN
Sbjct: 58  LLFG-NIPVRNISQLNGTVTVGIPAAFDCYSGTG--NRTDKLSWSIDLGSGPLMFSDTRN 114

Query: 129 KLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVT 188
             TA GCDT A + +   ++ + C+SIC    +    N CSG GCC T +PK  KSLN++
Sbjct: 115 VFTAIGCDTSAQVINKDRTYGAACLSICTENVSLSDGNPCSGSGCCQTSIPKGLKSLNIS 174

Query: 189 LRSAYNHSRLGNFMPCDYAFLADET-FNLLDFQLSDY--------DKSSSNAKIEWVVKE 239
             S  NH+ + +F PC  AFL D +   L D+ LS          D+  ++A IEWVVK 
Sbjct: 175 TTSYNNHTNVSDFNPCGIAFLVDRSSLKLSDWPLSRRPKRGKDKNDEYRTDAVIEWVVKN 234

Query: 240 GKCPD-DQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERY 296
             C     N++ Y C  N NC YSEN +GYRCLCK GF+GNPYL  GC DIDECK + + 
Sbjct: 235 ETCEQATANTSAYACRTNANCTYSEN-QGYRCLCKEGFEGNPYLQEGCQDIDECKVRGKN 293

Query: 297 HCE-GTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAV----IGAAIFTVTVGILAF 351
            CE GTC+N  G+Y C CP+G +GDGK +      T I+ +    +GA+IF V + +L +
Sbjct: 294 PCEEGTCENVIGDYKCRCPVGKYGDGKTAPPPLFQTEISGLTRSAVGASIFLVVICLLLY 353

Query: 352 IACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLS 411
           + C +R K++NF  NGG  LK+QRVRIFSEAEL+KAT NY     +GEGGFGSVY GVL+
Sbjct: 354 MICTKRIKEKNFQENGGKFLKNQRVRIFSEAELVKATNNYADDRKIGEGGFGSVYSGVLT 413

Query: 412 DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG 471
           D+T VAVKK K  DK +++ EFQ EM IVSQ+NHKNVVK+LGLCL+TKVPLLVYEF+SNG
Sbjct: 414 DNTMVAVKKSKGVDKAQMNAEFQKEMSIVSQVNHKNVVKLLGLCLETKVPLLVYEFISNG 473

Query: 472 TLFHHIHSKSSQVLKTW 488
           TL  HIH K S++L +W
Sbjct: 474 TLSKHIHDKGSRILASW 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132144|ref|XP_002328196.1| predicted protein [Populus trichocarpa] gi|222837711|gb|EEE76076.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/463 (51%), Positives = 310/463 (66%), Gaps = 21/463 (4%)

Query: 30  RPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGT 89
           +PGC+EKCG+VSVPYPFGI  P CAMD++FFLNC+ +    +L F  N+    IS+ +GT
Sbjct: 1   KPGCQEKCGNVSVPYPFGIGKPDCAMDEHFFLNCSSNDDGAELWFRSNMTARKISVPEGT 60

Query: 90  MIGSIWTAQRCYNDLGG-CNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSF 148
           +  SI TA  CY+  G    Y D  + LG GPF FSDT N  T  GCDT A + +   ++
Sbjct: 61  VTVSIGTAYSCYDKSGNETRYFDQSMKLGPGPFTFSDTLNIFTVIGCDTAAQVTNEEFTY 120

Query: 149 WSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAF 208
              C+S+C         N+CSG GCCHT +P   KSL+++  S +NHS + +F P  Y  
Sbjct: 121 GVACLSLCTKYVNMTDANACSGSGCCHTSIPMGLKSLDISSYSFFNHSNVSDFNP--YWP 178

Query: 209 LADETFNLLDFQLSDYDKSSSNAKIEWVVKEGKCPDDQ-NSNVYRCGDNTNCDYSENGEG 267
           L+         +++D  + +S+  IEWVVK   C   + N++ Y CG NTNC YSENG+G
Sbjct: 179 LS---------RMAD-GEDTSDVAIEWVVKNETCEQAKANTSAYACGINTNCTYSENGQG 228

Query: 268 YRCLCKPGFQGNPYL--GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSC 325
           YRC+C  GF+GNPYL  GC DIDECK  ERY CEG CKNT G+Y C CP G + + +  C
Sbjct: 229 YRCVCNEGFEGNPYLEQGCQDIDECKYPERYPCEGKCKNTIGSYKCHCPFGKYANSENGC 288

Query: 326 QGFRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELI 385
           Q F       +I  ++F + +  L ++ C +RR+ +NF  NGGM+LKHQRVRIF EAEL 
Sbjct: 289 QRF-----GGIIIISVFLLIICFLLYVICTKRRRDKNFRKNGGMVLKHQRVRIFREAELE 343

Query: 386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH 445
           KAT NY     LGEGGFG VY+GVL+D+T VAVKK K  DK ++++EFQ E+GIVSQ+NH
Sbjct: 344 KATNNYVDDQKLGEGGFGYVYKGVLADNTLVAVKKFKGVDKDQLNEEFQKEIGIVSQVNH 403

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTW 488
           +NVVK+LGLCL+TKVPLLVYEF+SNGTL+ HIH K SQ+L +W
Sbjct: 404 RNVVKLLGLCLETKVPLLVYEFISNGTLYKHIHDKRSQILASW 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102957|ref|XP_002312869.1| predicted protein [Populus trichocarpa] gi|222849277|gb|EEE86824.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/379 (57%), Positives = 272/379 (71%), Gaps = 6/379 (1%)

Query: 116 LGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCH 175
           LG GPF FSD+RN  TA GCDT A + +   +F + C+S+C         NSCSG GCC 
Sbjct: 6   LGSGPFTFSDSRNMFTAVGCDTVATVTNEEVTFGAACLSLCTRNVTMSKNNSCSGSGCCQ 65

Query: 176 TPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLAD-ETFNLLDFQLS--DYDKSSSNAK 232
           T +PK  KSLN+T++S  NH  +  F PC +AFL D ++ +L D+ LS    D  +SN  
Sbjct: 66  TSIPKGLKSLNITIQSTDNHKNVSEFNPCGFAFLEDKDSLDLSDWPLSRTPTDFETSNVV 125

Query: 233 IEWVVKEGKCPDDQ-NSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDE 289
           IEWV +  KC   Q N + Y CG NTNC YS+NG+GYRC C  GF+GNPYL  GC DIDE
Sbjct: 126 IEWVAQTEKCEKAQANKSSYACGINTNCYYSDNGQGYRCACNAGFEGNPYLEQGCQDIDE 185

Query: 290 CKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGIL 349
           CK+ ++Y C G C NT G+Y C C +GMHGDGK+ CQGF ITTI AV+GA +  V + +L
Sbjct: 186 CKDPKKYTCHGKCHNTIGDYECKCSLGMHGDGKIGCQGFAITTIIAVVGAIVSLVIICLL 245

Query: 350 AFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGV 409
            F+   +RRK +NF  NGG +LKHQRVRIFSEAEL KAT NYD    +GEGGFGSVY+G+
Sbjct: 246 LFMILSKRRKDKNFRENGGTVLKHQRVRIFSEAELTKATNNYDDDKKIGEGGFGSVYKGI 305

Query: 410 LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS 469
           L+D+T VAVKK K  DK +++++FQHE+ +VSQ+NHKNVVK+LGLCL+TKVPLLVYEF+S
Sbjct: 306 LADNTVVAVKKSKGVDKAQMNEDFQHEICVVSQVNHKNVVKLLGLCLETKVPLLVYEFIS 365

Query: 470 NGTLFHHIHSKSSQVLKTW 488
           NGTLF HIH K SQVL +W
Sbjct: 366 NGTLFKHIHDKRSQVLASW 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491931|ref|XP_002273813.2| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/446 (49%), Positives = 294/446 (65%), Gaps = 42/446 (9%)

Query: 50  DPKCAMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGCNY 109
           D KC  DK F LNC    ++  LL G NI V ++S+++ T++ +I  A  CYN+LG  +Y
Sbjct: 24  DEKCDWDKDFLLNC----TATGLLLGANIPVVSVSVKEATLVVTIHPAYDCYNELGLADY 79

Query: 110 TDVRIDLGE-GPFKFSDTRNKLTAFGCDTYAY-MGDLVGSFWSGCISICNNESAKITENS 167
            D  I+L E   F FSD+RNK TA GCDT AY MG     + SGC + C+        NS
Sbjct: 80  FDQAIELVENSSFTFSDSRNKFTALGCDTMAYVMGPKAQLYASGCSTFCDKLVNFAQSNS 139

Query: 168 CSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCDYAFLAD-ETFNLLDFQLSDYDK 226
           CSG+GCC T +P    +LN+TLRS+ NHSR+  F  C YAFL D ++F+L    L     
Sbjct: 140 CSGLGCCQTSIPAGLHTLNITLRSSGNHSRILWFNKCSYAFLVDTDSFHLSKMNL----- 194

Query: 227 SSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GC 284
                                     CG  + CD +    GY C C+ G+ GNPYL  GC
Sbjct: 195 --------------------------CG--SPCDSNTTRSGYLCSCEQGYAGNPYLPNGC 226

Query: 285 HDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTV 344
            DI+EC++ + Y C+GTCKNT GNYTC CP+GMHG+GKV+CQGFR+TT AAVIGA +  V
Sbjct: 227 QDINECEDPKTYTCQGTCKNTAGNYTCSCPLGMHGNGKVACQGFRVTTFAAVIGAVVVAV 286

Query: 345 TVGILAFIACRERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGS 404
              IL FI  ++  + +NF  NGG++LK QR+++F+EAEL KAT NYD+S  LG GG G 
Sbjct: 287 VACILIFIEWKKLARHKNFKKNGGLLLKRQRIKLFTEAELKKATNNYDRSRLLGRGGSGH 346

Query: 405 VYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV 464
           VY+G+L+DD QVAVKKP EADKI+++++FQHE+ +VSQ+NH NVVK+LGLCL+T V +LV
Sbjct: 347 VYKGILADDVQVAVKKPVEADKIQINEQFQHEIDVVSQVNHVNVVKLLGLCLETPVTMLV 406

Query: 465 YEFVSNGTLFHHIHSKSSQVLKTWKI 490
           YEFVSNGTLF HIH  +S+++++WK+
Sbjct: 407 YEFVSNGTLFQHIHDPNSEIVRSWKL 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132194|ref|XP_002328208.1| predicted protein [Populus trichocarpa] gi|222837723|gb|EEE76088.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/510 (44%), Positives = 310/510 (60%), Gaps = 49/510 (9%)

Query: 11  MLWLMLLLSWPAAASSS--NARPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVS 68
            L +M LL  P AAS++  + +PGC++KCG+VSVPYPFGI +  CAM+K+FFLNC+    
Sbjct: 4   FLLMMSLLLCPVAASTARPDVKPGCQDKCGNVSVPYPFGILERSCAMNKHFFLNCSSGAD 63

Query: 69  -SPQLLFGINIEVFNISIEDGTMIGSIWTAQRCYNDLGGC--NYTDVRIDLGEGPFKFSD 125
             P+LLF  N     IS+ +GT+  S++TA  CYN+ G    NY      LG GPF  SD
Sbjct: 64  GQPELLFARNFPAREISVLEGTLTASLYTAFTCYNETGSRTDNYPQ-SFTLGSGPFMLSD 122

Query: 126 TRNKLTAFGCDTYAYMGDLVGSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSL 185
           TRN  T  GCDTYA M +   ++ + C+S+C  +      N CSG GCC TP+PK  KSL
Sbjct: 123 TRNVFTVIGCDTYAGMTNYEFTYGAACLSLCTEDVNMSDGNPCSGSGCCQTPIPKGLKSL 182

Query: 186 NVTLRSAYNHSRLGNFMPCDYAFLAD-ETFNLLDFQLSDYDKSSSNAK-----IEWVVKE 239
           N  L S YN++ + +F  C +AFL D ++F + D+ LS   K   +A      IEWVVK 
Sbjct: 183 NYPLSSFYNYTNVSDFNLCGFAFLVDKKSFKISDWPLSRKPKYGKDAYTTDIVIEWVVKN 242

Query: 240 GKCPDDQ-NSNVYRCGDNTNCDYSEN-GEGYRCLCKPGFQGNPYL--GCH-DIDECKEKE 294
             C   + N + Y CG N  C Y EN G+GYRCLC  GF+GNPYL  GC  DIDECK + 
Sbjct: 243 ETCEQAKANQSTYACGTNAKCTYPENIGQGYRCLCNEGFEGNPYLPEGCQVDIDECKVRG 302

Query: 295 RYHC-EGTCKNTFGNYTCDCPIGMHGDGKVSCQGFRITTIAAVIGAAIFTVTVGILAFIA 353
           +  C EGTC+N  G+Y C CP G +GDGK          +  +IGA   +  +       
Sbjct: 303 KNACQEGTCENVIGDYKCRCPRGKYGDGKTG-------LLLLLIGAWWMSKLI------- 348

Query: 354 CRERRK----KRNFFN-NGGMILKH---------QRVRIFSEAELIKATKNYDKSNFLGE 399
             +RRK    K+ FF  NGG++L+          Q+ +IFS  EL KAT  ++++  LG 
Sbjct: 349 --KRRKCIQLKKLFFKRNGGLLLQQQLSSSDGSVQKTKIFSSNELEKATDYFNENRILGH 406

Query: 400 GGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK 459
           GG G+VY+G+L+D + VAVKK    D+ ++ +EF +E+ I+SQINH+NVV++LG CL+T 
Sbjct: 407 GGQGTVYKGMLADGSIVAVKKSTIVDEEKL-EEFINEVVILSQINHRNVVRLLGCCLETD 465

Query: 460 VPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           VPLLVYEF+ NGTL H++H ++     +W+
Sbjct: 466 VPLLVYEFIPNGTLSHYLHEQNEDFTLSWE 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
TAIR|locus:2014912	732	WAK2 "wall-associated kinase 2	0.570	0.382	0.362	4.7e-74
TAIR|locus:2014897	741	WAK3 "wall associated kinase 3	0.572	0.379	0.342	1.2e-65
TAIR|locus:2014962	733	WAK5 "wall associated kinase 5	0.556	0.372	0.321	2.6e-65
TAIR|locus:2014902	735	WAK1 "cell wall-associated kin	0.576	0.385	0.297	3.9e-60
TAIR|locus:2014952	738	WAK4 "wall associated kinase 4	0.539	0.359	0.342	1.4e-59
TAIR|locus:2200562	748	WAKL2 "wall associated kinase-	0.230	0.151	0.517	1.3e-50
TAIR|locus:2032875	720	AT1G16260 [Arabidopsis thalian	0.535	0.365	0.317	2.7e-50
TAIR|locus:2030988	764	AT1G17910 [Arabidopsis thalian	0.236	0.151	0.470	7.6e-49
TAIR|locus:2205040	792	AT1G69730 [Arabidopsis thalian	0.236	0.146	0.5	2.6e-46
TAIR|locus:2126271	793	AT4G31110 [Arabidopsis thalian	0.219	0.136	0.532	2.5e-44

TAIR|locus:2014912 WAK2 "wall-associated kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 112/309 (36%), Positives = 163/309 (52%)

Query:    30 RPGCEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSVSSPQLLFGINIEVFNISIED 87
             R  C+ +CG+V+V YPFG   P C    D+ F L CN      +L FG N+ V N+S+  
Sbjct:    26 RKECQTRCGNVAVEYPFGTS-PGCYYPGDESFNLTCNEQ---EKLFFG-NMPVINMSLS- 79

Query:    88 GTMIGSIWTAQRCYNDLGG-CNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDL-V 145
             G +   +  ++ CY+  G   +Y   R  LG   F  S+  N+ T  GC++YA++    V
Sbjct:    80 GQLRVRLVRSRVCYDSQGKQTDYIAQRTTLGN--FTLSEL-NRFTVVGCNSYAFLRTSGV 136

Query:   146 GSFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMPCD 205
               + +GCISIC++ + K    SCSG GCC  P+P+    + V   S +NH  +  F PC 
Sbjct:   137 EKYSTGCISICDSATTK--NGSCSGEGCCQIPVPRGYSFVRVKPHSFHNHPTVHLFNPCT 194

Query:   206 YAFLADETFNLLDFQ-LSDYDK----SSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCD 260
             YAFL ++   + DF  L D +     ++    ++W + +  C   +   V  CG N+ C 
Sbjct:   195 YAFLVED--GMFDFHALEDLNNLRNVTTFPVVLDWSIGDKTCKQVEYRGV--CGGNSTCF 250

Query:   261 YSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCE--GTCKNTFGNYTCDCPIG 316
              S  G GY C C  GF+GNPYL  GC DI+EC    R++C    TC+NT G++ C+CP G
Sbjct:   251 DSTGGTGYNCKCLEGFEGNPYLPNGCQDINECISS-RHNCSEHSTCENTKGSFNCNCPSG 309

Query:   317 MHGDGKVSC 325
                D   SC
Sbjct:   310 YRKDSLNSC 318

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0009311 "oligosaccharide metabolic process" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009992 "cellular water homeostasis" evidence=IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2014897 WAK3 "wall associated kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 110/321 (34%), Positives = 149/321 (46%)

Query:    30 RPGCEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSVSSPQLLFGINIEVFNISIED 87
             R  C+ KCG+V++ YPFGI    C    D  F L C   V    LLFGI I+V NIS   
Sbjct:    28 REDCKLKCGNVTIEYPFGISTG-CYYPGDDNFNLTC--VVEEKLLLFGI-IQVTNIS-HS 82

Query:    88 GTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVGS 147
             G +         CY      N T +   LG   F  S + NK T  GC+  + +      
Sbjct:    83 GHVSVLFERFSECYEQKNETNGTALGYQLGSS-FSLS-SNNKFTLVGCNALSLLSTFGKQ 140

Query:   148 FWS-GCISICNNESAKITENSCSGIGCCHT-----PLPKSTKSL-NVTLRSAYNHSR-LG 199
              +S GC+S+CN++        C+G+GCC T     P    T    +V LR+  N+S  L 
Sbjct:   141 NYSTGCLSLCNSQPE--ANGRCNGVGCCTTEDFSVPFDSDTFQFGSVRLRNQVNNSLDLF 198

Query:   200 N-----FMPCDYAFLADE-TFNLLDFQLSDYDKSSSNAK-----IEWVVKEGKCPDDQNS 248
             N     F PC YAFL ++  FN   F  S   K+  N       ++W +    C  +Q  
Sbjct:   199 NTSVYQFNPCTYAFLVEDGKFN---FDSSKDLKNLRNVTRFPVALDWSIGNQTC--EQAG 253

Query:   249 NVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCEG--TCKN 304
             +   CG N++C  S    GY C C  G+ GNPY   GC DIDEC   + ++C    TC+N
Sbjct:   254 STRICGKNSSCYNSTTRNGYICKCNEGYDGNPYRSEGCKDIDECIS-DTHNCSDPKTCRN 312

Query:   305 TFGNYTCDCPIGMHGDGKVSC 325
               G + C CP G   +  +SC
Sbjct:   313 RDGGFDCKCPSGYDLNSSMSC 333

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014962 WAK5 "wall associated kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 96/299 (32%), Positives = 145/299 (48%)

Query:    30 RPGCEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSVSSPQLLFGINIEVFNISIED 87
             R  C+ +CGDV + YPFGI    C    D  F + C      P +L   NIEV N +   
Sbjct:    26 RDDCQTRCGDVPIDYPFGISTG-CYYPGDDSFNITCEED--KPNVLS--NIEVLNFN-HS 79

Query:    88 GTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDL-VG 146
             G + G I  +  CY+     ++  +   L      FS   NK T  GC+ +A +    + 
Sbjct:    80 GQLRGLIPRSTVCYDQQTNNDFESLWFRLDN--LSFSPN-NKFTLVGCNAWALLSTFGIQ 136

Query:   147 SFWSGCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNV-TLRSAY-NHSRLGNFMPC 204
             ++ +GC+S+C+        + C+G+GCC T +     S  + T  S + N + + +F PC
Sbjct:   137 NYSTGCMSLCDTPPPP--NSKCNGVGCCRTEVSIPLDSHRIETQPSRFENMTSVEHFNPC 194

Query:   205 DYAFLADE-TFNLLDFQ-LSDY-DKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDY 261
              YAF  ++  FN    + L D  + +     ++W +    C      N+  CG N+ C  
Sbjct:   195 SYAFFVEDGMFNFSSLEDLKDLRNVTRFPVLLDWSIGNQTCEQVVGRNI--CGGNSTCFD 252

Query:   262 SENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCE--GTCKNTFGNYTCDCPIG 316
             S  G+GY C C  GF GNPYL  GC DI+EC  +  ++C    TC+NT G++ C CP G
Sbjct:   253 STRGKGYNCKCLQGFDGNPYLSDGCQDINECTTRI-HNCSDTSTCENTLGSFHCQCPSG 310

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014902 WAK1 "cell wall-associated kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
 Identities = 94/316 (29%), Positives = 146/316 (46%)

Query:    30 RPG--CEEKCGDVSVPYPFGIDDPKCAM--DKYFFLNCNRSVSSPQLLFGINIEVFNISI 85
             +PG  C+ KCG++++ YPFGI    C    ++ F + C      P +L  I +  FN S 
Sbjct:    27 QPGENCQNKCGNITIEYPFGISSG-CYYPGNESFSITCKED--RPHVLSDIEVANFNHS- 82

Query:    86 EDGTMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLV 145
               G +   +  +  CY++ G     D    L       S   NKLTA GC+  + + D  
Sbjct:    83 --GQLQVLLNRSSTCYDEQGKKTEEDSSFTLEN--LSLS-ANNKLTAVGCNALSLL-DTF 136

Query:   146 G--SFWSGCISICNNESAKITENSCSGIGCCHTPL--PKSTKSLNVTLRSAYNHSRLGNF 201
             G  ++ + C+S+C  +S    +  C+G GCC   +  P  + +   T     + +   +F
Sbjct:   137 GMQNYSTACLSLC--DSPPEADGECNGRGCCRVDVSAPLDSYTFETTSGRIKHMTSFHDF 194

Query:   202 MPCDYAFLA-DETFNLLDFQ--LSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTN 258
              PC YAFL  D+ FN    +  L+  +       ++W V    C    ++++  CG N+ 
Sbjct:   195 SPCTYAFLVEDDKFNFSSTEDLLNLRNVMRFPVLLDWSVGNQTCEQVGSTSI--CGGNST 252

Query:   259 CDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKE---RYHCEG--TCKNTFGNYTC 311
             C  S    GY C C  GF GNPYL  GC D++EC       R++C    TC+N  G + C
Sbjct:   253 CLDSTPRNGYICRCNEGFDGNPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYC 312

Query:   312 DCPIGMHGDGK-VSCQ 326
              C  G   D   +SC+
Sbjct:   313 KCQSGYRLDTTTMSCK 328

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007166 "cell surface receptor signaling pathway" evidence=IPI

GO:0005773 "vacuole" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009615 "response to virus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2014952 WAK4 "wall associated kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
 Identities = 104/304 (34%), Positives = 140/304 (46%)

Query:    31 PGCEEKCGDVSVPYPFGIDDPKC--AMDKYFFLNCNRSVSSPQLLFGINIEVFNISIEDG 88
             P C EKCG+V++ YPFG   P C  A D  F L+C   V+  + LF   +EV  IS    
Sbjct:    26 PRCPEKCGNVTLEYPFGFS-PGCWRAEDPSFNLSC---VN--ENLFYKGLEVVEIS--HS 77

Query:    89 TMIGSIWTAQR-CYNDLGG-CNYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDLVG 146
             + +  ++ A   CYN  G     T    +LG      S   N +TA GC++YA++     
Sbjct:    78 SQLRVLYPASYICYNSKGKFAKGTYYWSNLGN--LTLSGN-NTITALGCNSYAFVSSNGT 134

Query:   147 SFWS-GCISICNNESAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFMP-- 203
                S GCIS C+  S +     C+G GCC  P+P     L V  RS Y      +  P  
Sbjct:   135 RRNSVGCISACDALSHE-ANGECNGEGCCQNPVPAGNNWLIV--RS-YRFDNDTSVQPIS 190

Query:   204 ---CDYAFLADE---TFNLLD-FQLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDN 256
                C YAFL +     +N  D +             ++W ++   C         +CG N
Sbjct:   191 EGQCIYAFLVENGKFKYNASDKYSYLQNRNVGFPVVLDWSIRGETCGQVGEK---KCGVN 247

Query:   257 TNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYH---CEG--TCKNTFGNY 309
               C  S +G GY C CK GFQGNPYL  GC DI+EC      H   C G  TC+N  G++
Sbjct:   248 GICSNSASGIGYTCKCKGGFQGNPYLQNGCQDINECTTANPIHKHNCSGDSTCENKLGHF 307

Query:   310 TCDC 313
              C+C
Sbjct:   308 RCNC 311

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2200562 WAKL2 "wall associated kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
 Identities = 59/114 (51%), Positives = 84/114 (73%)

Query:   377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHE 436
             RIFS  EL KAT N++K+  LG+GG G+VY+G+L D   VAVK+ K  D+ RV +EF +E
Sbjct:   402 RIFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRV-EEFINE 460

Query:   437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
             + +++QINH+N+VK+LG CL+T+VP+LVYEFV NG L   +H +S     TW++
Sbjct:   461 VVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEV 514

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2032875 AT1G16260 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
 Identities = 94/296 (31%), Positives = 137/296 (46%)

Query:    33 CEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSS-PQLLFG-INIEVFNISIEDGTM 90
             C + CG+VSVPYPFGI    C  +K+F + C  S    P LL   I   V + ++ D   
Sbjct:    33 CSDHCGNVSVPYPFGIGKG-CYKNKWFEIVCKSSSDQQPILLLPRIRRAVTSFNLGDPFS 91

Query:    91 IGSIWTAQRCYNDL--GGC----NYTDVRIDLGEGPFKFSDTRNKLTAFGCDTYAYMGDL 144
             I S++      + L   GC     Y+   ++L   PF  S+  NK TA GC+  A+M ++
Sbjct:    92 I-SVYNKFYIQSPLKHSGCPNRDGYSSSSLNLKGSPFFISEN-NKFTAVGCNNKAFM-NV 148

Query:   145 VGSFWSGCISICNNE--SAKITENSCSGIGCCHTPLPKSTKSLNVTLRSAYNHSRLGNFM 202
              G    GC + C NE  S K    SC G  CC   +P     L + +  A       N  
Sbjct:   149 TGLQIVGCETTCGNEIRSYKGANTSCVGYKCCQMTIPPL---LQLQVFDATVEKLEPNKQ 205

Query:   203 PCDYAFLADETFNLLDF---QLSDYDKSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNC 259
              C  AFL   T +   F   +L +Y + ++  ++EW +          S    C  NT  
Sbjct:   206 GCQVAFLTQFTLSGSLFTPPELMEYSEYTT-IELEWRLDLSY----MTSKRVLCKGNT-- 258

Query:   260 DYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHC-EGTCKNTFGNYTCD 312
              + E  + Y+C C  G++GNPY+  GC DIDEC++     C +  C N  G+Y C+
Sbjct:   259 -FFE--DSYQCSCHNGYEGNPYIPGGCQDIDECRDPHLNKCGKRKCVNVLGSYRCE 311

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2030988 AT1G17910 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
 Identities = 55/117 (47%), Positives = 83/117 (70%)

Query:   374 QRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEF 433
             ++ ++FS  EL KAT N++ +  +G+GG G+VY+G+L D   VAVKK    D+ ++ QEF
Sbjct:   437 EKTKLFSSRELEKATDNFNDNRVIGQGGQGTVYKGMLVDGRSVAVKKSNVVDEDKL-QEF 495

Query:   434 QHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
              +E+ I+SQINH++VVK+LG CL+T+VP+LVYEF+ NG LF H+H +       W +
Sbjct:   496 INEVIILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHLHEEFDDYTALWGV 552

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2205040 AT1G69730 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 2.6e-46, Sum P(3) = 2.6e-46
 Identities = 59/118 (50%), Positives = 87/118 (73%)

Query:   374 QRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEF 433
             ++  +FS  EL KAT+N+  +  LG+GG G+VY+G+L D   VAVKK K  D+ ++ +EF
Sbjct:   430 EKTIVFSSRELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKL-EEF 488

Query:   434 QHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ-VLKTWKI 490
              +E+ I+SQINH+N+VK+LG CL+TKVP+LVYEF+ NG LF H+H +  + ++ TW I
Sbjct:   489 INEVVILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDENIMATWNI 546

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126271 AT4G31110 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 2.5e-44, Sum P(4) = 2.5e-44
 Identities = 58/109 (53%), Positives = 83/109 (76%)

Query:   374 QRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEF 433
             ++ R+F+  EL KAT+N+ ++  LG GG G+VY+G+L D   VAVKK K  D+ ++ QEF
Sbjct:   436 EKTRVFNSRELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKL-QEF 494

Query:   434 QHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
              +E+ I+SQINH++VVK+LG CL+T+VP+LVYEF+ NG LF HIH + S
Sbjct:   495 INEVVILSQINHRHVVKLLGCCLETEVPMLVYEFIINGNLFKHIHEEES 543

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.66.211.1 hypothetical protein (667 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	491
pfam13947	106	pfam13947, GUB_WAK_bind, Wall-associated receptor	1e-30
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-20
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-19
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-18
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-17
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	9e-16
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-15
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-14
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	9e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-12
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-12
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-12
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-11
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	6e-11
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	8e-11
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-10
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-10
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-09
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-09
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-09
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-09
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	5e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-09
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	6e-09
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	9e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-08
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-08
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-08
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-08
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-08
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	6e-08
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	6e-08
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	8e-08
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-07
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	2e-07
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	3e-07
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	7e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	8e-07
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	8e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	8e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	9e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-06
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-06
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	3e-06
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	4e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	4e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	5e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	6e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	8e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	9e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	1e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	1e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-05
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-05
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-05
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	4e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-05
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	9e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-04
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-04
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	2e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-04
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	3e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-04
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	3e-04
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	3e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	4e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	4e-04
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	4e-04
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	5e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	5e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	5e-04
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	9e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	9e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	0.001
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	0.001
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	0.001
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.001
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.001
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	0.001
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.001
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	0.001
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	0.002
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	0.002
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.002
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.002
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.002
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.002
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	0.002
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	0.003
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.003
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	0.003
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	0.003
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	0.004
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	0.004

>gnl|CDD|222467 pfam13947, GUB_WAK_bind, Wall-associated receptor kinase galacturonan-binding

 Score =  114 bits (287), Expect = 1e-30
 Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 4/109 (3%)

Query: 30  RPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFG-INIEVFNISIEDG 88
            PGC ++CG+VS+PYPFGI  P CA D  F L CN + S P+LL G  N EV +IS+ +G
Sbjct: 1   LPGCPDRCGNVSIPYPFGI-GPGCARDPGFELTCNNTTSPPRLLLGNGNYEVLSISLANG 59

Query: 89  TMIGSIWTAQRCYNDLGGCNYTDVRIDLGEGPFKFSDTRNKLTAFGCDT 137
           T+      +  CYN  G     +  + LG GPF FS +RNK    GC+T
Sbjct: 60  TVRVLDPISSNCYNSSGK-RTDNGSLSLG-GPFFFSSSRNKFVVVGCNT 106

This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins. Length = 106

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 88.7 bits (221), Expect = 8e-20
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 397 LGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGEG FG VY+G L       +T+VAVK  KE       +EF  E  I+ +++H N+V++
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           LG+C Q +   +V E++  G L   +     ++     +
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLL 105

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 397 LGEGGFGSVYRGVLSD-----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGEG FG VY+G L       + +VAVK  KE    +  +EF  E  I+ +++H N+VK+
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKL 66

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
           LG+C + +  ++V E++  G L  ++     + L  
Sbjct: 67  LGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSL 102

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 397 LGEGGFGSVYRGVLSD-----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGEG FG VY+G L         +VAVK  KE    +  +EF  E  I+ +++H NVVK+
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKL 66

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           LG+C + +   +V E++  G L  ++     ++
Sbjct: 67  LGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKL 99

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 397 LGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LGEG FG VY+G L       T+VAVK  KE       ++F  E  ++ ++ H NVV++L
Sbjct: 3   LGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLL 62

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           G+C + +   LV E++  G L  ++   
Sbjct: 63  GVCTEEEPLYLVLEYMEGGDLLDYLRKS 90

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 75.7 bits (187), Expect = 9e-16
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LGEGGFG+VY         +VA+K  K+ D   + +E   E+ I+ ++NH N+VK+ G+ 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSS 482
                  LV E+   G+L   +     
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEG 87

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           Y+    LGEG FG VY          VA+K  K+    +  +    E+ I+ ++ H N+V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           ++  +        LV E+   G LF  +  +
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLKKR 91

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G+G FG VY+GVL  +T+VAVK  +      + ++F  E  I+ Q +H N+VK++G+C+
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           Q +   +V E V  G+L   +  K ++ L   K++
Sbjct: 63  QKQPIYIVMELVPGGSLLTFLRKKKNR-LTVKKLL 96

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 68.3 bits (167), Expect = 9e-13
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG VY+G L         T VA+K  KE  + +V QEF+ E  ++S + H N+V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           +LG+C + +   +++E++++G L   +   S
Sbjct: 73  LLGVCTKEQPTCMLFEYLAHGDLHEFLVRNS 103

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+ G         D   VAVK  KE       ++F+ E  +++   H+N+VK
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
             G+C +   P++V+E++ +G L
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDL 95

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 396 FLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
            LG+G FG V++G L D T VAVK  KE     +  +F  E  I+ Q +H N+VK++G+C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            Q +   +V E V  G     +  K  + LKT ++V
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKKKDE-LKTKQLV 96

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 397 LGEGGFGSVYRGVLSDD-TQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKNVVKILGL 454
           LG G FG+VY+         VAVK   K ++K +  Q  + E+ I+ +++H N+V+++  
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDA 66

Query: 455 CLQTKVPLLVYEFVSNGTLFHHIHSK 480
                   LV E+   G LF ++   
Sbjct: 67  FEDKDHLYLVMEYCEGGDLFDYLSRG 92

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
            + +   LG G FGSVY  +  D  + +AVK      D     +  + E+ I+S + H N
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60

Query: 448 VVKILGLCLQ-TKVPLLVY-EFVSNGTLFHHIHS 479
           +V+  G      K  L ++ E+VS G+L   +  
Sbjct: 61  IVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKK 94

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 17/121 (14%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVSQ 431
           RI  E EL       +K   LG G FG+VY+GV   + +     VA+K  +E    + ++
Sbjct: 2   RILKETEL-------EKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANK 54

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLKT 487
           E   E  +++ ++H +VV++LG+CL ++V  L+ + +  G L  ++ +      SQ L  
Sbjct: 55  EILDEAYVMASVDHPHVVRLLGICLSSQV-QLITQLMPLGCLLDYVRNHKDNIGSQYLLN 113

Query: 488 W 488
           W
Sbjct: 114 W 114

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 11/102 (10%)

Query: 391 YDKSNF-----LGEGGFGSVYR----GVLS--DDTQVAVKKPKEADKIRVSQEFQHEMGI 439
           Y ++N      +G+G FG V++    G+L     T VAVK  KE     +  +FQ E  +
Sbjct: 2   YPRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 61

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           +++ +H N+VK+LG+C   K   L++E+++ G L   +  +S
Sbjct: 62  MAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRS 103

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 395 NFLGEGGFGSVYRGVLSD-------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
           NFLG G FG VY G  +D         +VAVK  ++    +  +EF  E  ++S  NH N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
           +VK+LG+CL  +   ++ E +  G L  ++
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYL 90

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           K       +G+G FG V  G       VAVK  K  D    +Q F  E  +++ + H N+
Sbjct: 6   KELKLGATIGKGEFGDVMLGDYRGQK-VAVKCLK--DDSTAAQAFLAEASVMTTLRHPNL 62

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           V++LG+ LQ     +V E+++ G+L  ++ S+   V+
Sbjct: 63  VQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVI 99

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G+         +T+VA+K   E   +R   EF +E  ++ + N  +VV+
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +LG+    +  L+V E ++ G L
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDL 96

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
           NY   + +G G FG VY+G+ L     VA+K+   E  K    +    E+ ++  + H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 448 VVKILGLCLQTKVPL-LVYEFVSNGTL 473
           +VK +G  ++T   L ++ E+  NG+L
Sbjct: 61  IVKYIG-SIETSDSLYIILEYAENGSL 86

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 59.8 bits (143), Expect = 1e-09
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINH-K 446
           +Y     LGEG FG VY     D   VA+K    K   K +  + F  E+ I++ +NH  
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           N+VK+           LV E+V  G+L   +     + 
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKG 96

Length = 384

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 17/122 (13%)

Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E EL        +   LG G FG+VY+G+   + +     VA+K   E    + +
Sbjct: 1   LRILKETEL-------KRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKAN 53

Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
            EF  E  I++ ++H ++V++LG+CL   +  LV + + +G L  ++H       SQ+L 
Sbjct: 54  VEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLDYVHEHKDNIGSQLLL 112

Query: 487 TW 488
            W
Sbjct: 113 NW 114

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 393 KSNFLGEGGFGSVYRG---VLSDDT--QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
               LGEG FG V       L D+T  QVAVK    + + +   +F+ E+ I+  ++H+N
Sbjct: 8   FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHEN 67

Query: 448 VVKILGLC--LQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           +VK  G+C     +   L+ E++ +G+L  ++     Q+ 
Sbjct: 68  IVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQIN 107

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 8/83 (9%)

Query: 397 LGEGGFGSVYRGVLS----DDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           +G G FG V RG L      +  VA+K  K   +DK R+  +F  E  I+ Q +H N+++
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRL--DFLTEASIMGQFDHPNIIR 69

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           + G+  +++  +++ E++ NG+L
Sbjct: 70  LEGVVTKSRPVMIITEYMENGSL 92

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G+  +  +VA+K  K  D +   Q+FQ E+  + ++ HK+++ +  +C 
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLL-KQQDFQKEVQALKRLRHKHLISLFAVCS 72

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
             +   ++ E +  G+L   + S   QVL  
Sbjct: 73  VGEPVYIITELMEKGSLLAFLRSPEGQVLPV 103

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 56.6 bits (136), Expect = 5e-09
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG V+ G L +D+T VAVK  +E     +  +F  E  I+ Q +H N+V+++G+C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
            Q +   +V E V  G     + ++  ++
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLRTEGPRL 91

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 395 NFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           + LG G +G VY GV       VAVK  KE D + V +EF  E  ++ +I H N+V++LG
Sbjct: 12  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKEAAVMKEIKHPNLVQLLG 69

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           +C +     ++ EF++ G L  ++   + Q +
Sbjct: 70  VCTREPPFYIITEFMTYGNLLDYLRECNRQEV 101

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 56.6 bits (136), Expect = 6e-09
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 397 LGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++ + N  +VV+
Sbjct: 14  LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 74  LLGVVSQGQPTLVIMELMTRGDLKSYLRS 102

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 17/94 (18%)

Query: 397 LGEGGFGSVY-------------RGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGI 439
           LGEG FG V+                 +D+      VAVK  +        ++F  E+ I
Sbjct: 13  LGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKI 72

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +S+++  N+ ++LG+C       ++ E++ NG L
Sbjct: 73  LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDL 106

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 391 YDKSNFLGEGGFGSVYRG-VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           ++    +G+GGFG VY+        +VA+K  K   K +  ++  +E+ I+ +  H N+V
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEK-KEKIINEIQILKKCKHPNIV 60

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           K  G  L+     +V EF S G+L          +LK+  
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSL--------KDLLKSTN 92

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 397 LGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  KEA +    Q+FQ E  +++ + H+++V+
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTVLQHQHIVR 71

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL--FHHIHSKSSQVL 485
             G+C + +  L+V+E++ +G L  F   H   +++L
Sbjct: 72  FYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKIL 108

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+C 
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREG--AMSEEDFIEEAQVMMKLSHPKLVQLYGVCT 69

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV+EF+ +G L  ++ ++
Sbjct: 70  ERSPICLVFEFMEHGCLSDYLRAQ 93

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)

Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 1   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 53

Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V  L+ + +  G L  ++        SQ L 
Sbjct: 54  KEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLL 112

Query: 487 TW 488
            W
Sbjct: 113 NW 114

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKK----PKEADKI-RVSQEFQHEMGIVSQINH 445
           + K   LG+G +G+VY G+ +    +AVK+            +  ++ Q E+ ++  + H
Sbjct: 2   WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKH 61

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            N+V+ LG CL      +  EFV  G++
Sbjct: 62  VNIVQYLGTCLDDNTISIFMEFVPGGSI 89

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGV------LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V +         +  T VAVK  KE       ++   E  ++ Q+NH +V+K
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           + G C Q    LL+ E+   G+L
Sbjct: 68  LYGACSQDGPLLLIVEYAKYGSL 90

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 8/87 (9%)

Query: 393 KSNFLGEGGFGSVYRGVLS----DDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHK 446
           K   +G G FG V+RG+L      +  VA+K  KP   +K R  Q+F  E  I+ Q +H 
Sbjct: 9   KQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQR--QDFLSEASIMGQFSHH 66

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTL 473
           N++++ G+  + K  +++ E++ NG L
Sbjct: 67  NIIRLEGVVTKFKPAMIITEYMENGAL 93

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 393 KSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           + N +G G FG VY  V L     +AVK+   + +  +  +E   EM ++  + H N+VK
Sbjct: 4   RGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK 63

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLF 474
             G+ +  +   +  E+ S GTL 
Sbjct: 64  YYGVEVHREKVYIFMEYCSGGTLE 87

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 395 NFLGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
             +G+G FG VY G L D        AVK       +   ++F  E  I+   +H NV+ 
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 451 ILGLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           +LG+CL ++  PL+V  ++ +G L + I S++
Sbjct: 61  LLGICLPSEGSPLVVLPYMKHGDLRNFIRSET 92

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG G FG V+            +T V VK  ++     +  EF+ E+ +  +++HKNVV+
Sbjct: 13  LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVR 72

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +LGLC + +   ++ E+   G L
Sbjct: 73  LLGLCREAEPHYMILEYTDLGDL 95

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 14  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 73

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 74  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 102

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 387 ATKNYDKSNFLGEGGFGSVYRGVLS----DDT--QVAVKKPKEADKIRVSQEFQHEMGIV 440
              +      LG G FG VY G+      D    QVAVK   E+   +   +F  E  I+
Sbjct: 4   PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIM 63

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           S+ NH+N+V+++G+  +     ++ E ++ G L
Sbjct: 64  SKFNHQNIVRLIGVSFERLPRFILLELMAGGDL 96

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 397 LGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LG G FGSV +GV       + +VAVK  K+       +EF  E  +++Q++H  +V+++
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+C    + +LV E    G L
Sbjct: 63  GVCKGEPL-MLVMELAPLGPL 82

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGL 454
           LG G FG V+ G+ ++ T VAVK  KP   D     ++F  E  I+ ++ H  ++++  +
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD----PKDFLAEAQIMKKLRHPKLIQLYAV 69

Query: 455 CLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
           C   +   +V E +  G+L  ++   + + LK
Sbjct: 70  CTLEEPIYIVTELMKYGSLLEYLQGGAGRALK 101

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 397 LGEGGFGSVYRGVL----SDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGE  FG +Y+G L     D  Q VA+K  K+ +  +   EFQ E  ++++++H N+V +
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCL 72

Query: 452 LGLCLQTKVPLLVYEFVSNGTL 473
           LG+  Q +   +++E+++ G L
Sbjct: 73  LGVVTQEQPVCMLFEYLNQGDL 94

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 397 LGEGGFGSVYRGVLSDDT----QVAVKKPKEADKIRVS--QEFQHEMGIVSQINHKNVVK 450
           LGEG FGSV  G LS D     +VAVK  K  D    S  +EF  E   +   +H NV+K
Sbjct: 7   LGEGEFGSVMEGQLSQDDGSQLKVAVKTMK-LDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 451 ILGLCLQTK------VPLLVYEFVSNGTL 473
           ++G+C +         P+++  F+ +G L
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDL 94

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 397 LGEGGFGSVYRGVL-----------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH 445
           LG+G F ++Y+GVL             +  V +K        R S  F     ++SQ++H
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGS--DHRDSLAFFETASLMSQLSH 60

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           K++VK+ G+C++ +  ++V E+V  G L   +H + + V   WK+ 
Sbjct: 61  KHLVKLYGVCVRDEN-IMVEEYVKFGPLDVFLHREKNNVSLHWKLD 105

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 397 LGEGGFGSVYRGVLSDDT---QVAVKKPKEADKIRVSQE-FQHEMGIVSQINHKNVVKIL 452
           LGEG FGSV  G L+ D    +VAVK  K A   R   E F  E   + + +H NV++++
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 453 GLCLQTK------VPLLVYEFVSNGTL 473
           G+CLQT        P+++  F+ +G L
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKHGDL 93

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 17/122 (13%)

Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E EL        K   LG G FG+VY+G+   D +     VA+K  +E    + +
Sbjct: 1   MRILKETEL-------KKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKAN 53

Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK----SSQVLK 486
           +E   E  +++ +    V ++LG+CL + V  LV + +  G L  ++        SQ L 
Sbjct: 54  KEILDEAYVMAGVGSPYVCRLLGICLTSTVQ-LVTQLMPYGCLLDYVRENKDRIGSQDLL 112

Query: 487 TW 488
            W
Sbjct: 113 NW 114

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G       VA+K  +E        +F  E  ++ +++H N+V++ G+C 
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIREG--AMSEDDFIEEAKVMMKLSHPNLVQLYGVCT 69

Query: 457 QTKVPLLVYEFVSNGTL 473
           + +   +V E+++NG L
Sbjct: 70  KQRPIFIVTEYMANGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 393 KSNFLGEGGFGSVYRGVLSDD-TQVAVKK----PKEADKIRVSQEFQHEMGIVSQINHKN 447
           K   LG G FGSVY G+  DD    AVK+              ++ + E+ ++S++ H N
Sbjct: 4   KGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPN 63

Query: 448 VVKILGLCLQTKVPLLVY-EFVSNGTL 473
           +V+ LG   + +  L ++ E V  G+L
Sbjct: 64  IVQYLG-TEREEDNLYIFLELVPGGSL 89

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 390 NYDKSN---FLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH 445
            YD++     LG+G +G VY    LS   ++A+K+  E D  R  Q    E+ + S + H
Sbjct: 6   EYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDS-RYVQPLHEEIALHSYLKH 64

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           +N+V+ LG   +     +  E V  G+L   + SK
Sbjct: 65  RNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSK 99

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGL 454
           LG G FG V+ G  +  T+VAVK  KP         + F  E  I+ ++ H  +V++  +
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSP----EAFLQEAQIMKKLRHDKLVQLYAV 69

Query: 455 CLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
           C + +   +V E++S G+L   + S   + L+
Sbjct: 70  CSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLR 101

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQE-FQHEMGIVSQINHKNVVKILGLC 455
           LG G FG V+ G      +VA+K   E     +S+E F  E  ++ +++H  +V++ G+C
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAINEG---AMSEEDFIEEAKVMMKLSHPKLVQLYGVC 68

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
            Q K   +V EF+ NG L +++  +  ++ K
Sbjct: 69  TQQKPLYIVTEFMENGCLLNYLRQRQGKLSK 99

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 397 LGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +GEG FG VY+GV     ++   VAVK  K      V ++F  E  I+ Q +H ++VK++
Sbjct: 14  IGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLI 73

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVLKTW 488
           G+   T+ P+ +V E    G L  ++     QV K  
Sbjct: 74  GVI--TENPVWIVMELAPLGELRSYL-----QVNKYS 103

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 397 LGEGGFGSV----YRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G+G FG V    YRG      +VAVK  K       +Q F  E  +++Q+ H N+V++L
Sbjct: 14  IGKGEFGDVMLGDYRG-----NKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLL 65

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           G+ ++ K  L +V E+++ G+L  ++ S+   VL
Sbjct: 66  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 99

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 397 LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG V RG L      +  VA+K  K     +  ++F  E  I+ Q +H N++ + 
Sbjct: 12  IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+  +++  +++ EF+ NG L
Sbjct: 72  GVVTKSRPVMIITEFMENGAL 92

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 397 LGEGGFGSVYRGV---LSDDTQV----AVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           LG+G F  +++G+   + D  ++     + K  +      S+ F     ++SQ++HK++V
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLV 62

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
              G+C+     ++V E+V  G+L  ++    + +  +WK+
Sbjct: 63  LNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKL 103

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 397 LGEGGFGSVYR----GVLSDDT--QVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V      G+   D   +VAVK  K        +    E+ I+S + NH+N+V
Sbjct: 43  LGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIV 102

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTW 488
            +LG C      L++ E+   G L + +  K    L   
Sbjct: 103 NLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLE 141

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVL-----SDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGE  FG VY+G L      + TQ VA+K  K+  +  + +EF+HE  + S++ H N+V 
Sbjct: 13  LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVC 72

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +LG+  + +   +++ + S+  L
Sbjct: 73  LLGVVTKEQPLSMIFSYCSHSDL 95

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 397 LGEGGFGSVYRG------VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  K+   +   ++FQ E  +++ + H+++VK
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-LAARKDFQREAELLTNLQHEHIVK 71

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL--FHHIHSKSSQVL 485
             G+C      ++V+E++ +G L  F   H   + +L
Sbjct: 72  FYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMIL 108

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 397 LGEGGFGSVYRG----VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LG+G FG V RG           VAVK  K      +  +F  E  I+  ++H+N++++ 
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLY 62

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIH 478
           G+ L   + ++V E    G+L   + 
Sbjct: 63  GVVLTHPL-MMVTELAPLGSLLDRLR 87

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 9/84 (10%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVV 449
           LGEG FG V+           D   VAVK  K+A D  R  ++F  E  +++ + H+++V
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR--KDFHREAELLTNLQHEHIV 70

Query: 450 KILGLCLQTKVPLLVYEFVSNGTL 473
           K  G+C++    ++V+E++ +G L
Sbjct: 71  KFYGVCVEGDPLIMVFEYMKHGDL 94

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 17/35 (48%), Positives = 18/35 (51%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           DIDEC         GTC NT G+Y C CP G  G 
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++ +++H+ +V++ G+C 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMKLSHEKLVQLYGVCT 69

Query: 457 QTKVPLLVYEFVSNGTLFHHI-----HSKSSQVLKTWKIV 491
           + +   +V E++SNG L +++       + SQ+L+  K V
Sbjct: 70  KQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDV 109

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 397 LGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LG G FG V +GV         VA+K  K  ++  V  E   E  I+ Q+++  +V+++G
Sbjct: 3   LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIG 62

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +C + +  +LV E  S G L   +  K  ++
Sbjct: 63  VC-EAEALMLVMEMASGGPLNKFLSGKKDEI 92

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-----PKEADKIRVSQEFQHEMGIVSQI 443
            Y+    +G+G FG VY     SD     +K+       E ++     E +    I+ ++
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVK----ILKKL 56

Query: 444 NHKNVVK-----ILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           NH N++K          L      +V E+   G L   I  +
Sbjct: 57  NHPNIIKYYESFEEKGKL-----CIVMEYADGGDLSQKIKKQ 93

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +GEG FG+V +G  +   +VAVK  K  D    +Q F  E  ++++++HKN+V++LG+ L
Sbjct: 14  IGEGEFGAVLQGEYTGQ-KVAVKNIK-CDV--TAQAFLEETAVMTKLHHKNLVRLLGVIL 69

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
              +  +V E +S G L + + ++
Sbjct: 70  HNGL-YIVMELMSKGNLVNFLRTR 92

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 71

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 72  EEPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLV 105

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVSQ 431
           RI  E EL        K   LG G FG+V++G+   +       VA+K  ++    +  Q
Sbjct: 2   RILKETEL-------RKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQ 54

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH----SKSSQVLKT 487
           E    M  +  ++H  +V++LG+C    +  LV +    G+L  H+     S   Q L  
Sbjct: 55  EITDHMLAMGSLDHAYIVRLLGICPGASLQ-LVTQLSPLGSLLDHVRQHRDSLDPQRLLN 113

Query: 488 W 488
           W
Sbjct: 114 W 114

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 19/90 (21%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-----PKEADK------IRVSQEFQHEM 437
            Y+K   LGEG +  VY+         VA+KK      KEA        +R       E+
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALR-------EI 53

Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEF 467
            ++ ++ H N++ +L +        LV+EF
Sbjct: 54  KLLQELKHPNIIGLLDVFGHKSNINLVFEF 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LGEG FG V +            + VAVK  K+    +   +   EM ++  I  HKN++
Sbjct: 20  LGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNII 79

Query: 450 KILGLCLQTKVPLLVYEFVSNGTL 473
            +LG+C Q     +V E+ ++G L
Sbjct: 80  NLLGVCTQEGPLYVVVEYAAHGNL 103

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQE-FQHEMGIVSQINHKNVVKILGLC 455
           LG G FG V+ G  +  T+VA+K  K+     +S E F  E  ++ Q+ H  +V++  + 
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGS---MSPEAFLAEANLMKQLQHPRLVRLYAVV 70

Query: 456 LQTKVPL-LVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
             T+ P+ ++ E++ NG+L   + +     L   K++
Sbjct: 71  --TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLI 105

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI--RVSQEFQHEMGIVSQINHKN 447
           +++  N +G+G FG V++ V   D +V   K  +  K+  R  +E   E  ++++++   
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL---KTWKI 490
           +++     L      +V E+  NG L   +  +  + L   + W+ 
Sbjct: 61  IIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRF 106

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMH 318
           DIDEC         GTC NT G+Y C+CP G  
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33

Length = 39

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query: 395 NFLGEGGFGSVYRG-VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           N +  G  G+ Y+G  + +  Q  VK+  + + I        +MG   ++ H N+VK++G
Sbjct: 696 NVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI--PSSEIADMG---KLQHPNIVKLIG 750

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
           LC   K   L++E++    L        S+VL+
Sbjct: 751 LCRSEKGAYLIHEYIEGKNL--------SEVLR 775

Length = 968

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 397 LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG V  G L      +  VA+K  K     +  ++F  E  I+ Q +H N++ + 
Sbjct: 12  IGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+  ++K  ++V E++ NG+L
Sbjct: 72  GVVTKSKPVMIVTEYMENGSL 92

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKK---PKEADKIRVSQEFQHEMGIVSQIN 444
             ++K N +GEG +G VYR   +     VA+KK     E D I +S     E+ ++  + 
Sbjct: 7   TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISS--LREITLLLNLR 64

Query: 445 HKNVVKIL 452
           H N+V++ 
Sbjct: 65  HPNIVELK 72

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 395 NFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVK 450
           + +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++  H N++ 
Sbjct: 13  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 72

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
           +LG C       L  E+  +G L   +  + S+VL+T
Sbjct: 73  LLGACEHRGYLYLAIEYAPHGNLLDFL--RKSRVLET 107

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 21/105 (20%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK----------PKEADKIRVSQEFQHEMGI 439
           Y+K   LGEG +G VY+         VA+KK          P  A  +R       E+ +
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTA--LR-------EISL 51

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           + ++ H N+VK+L +    +   LV+E+     L  ++  +   +
Sbjct: 52  LKELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGPL 95

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 397 LGEGGFGSV----------YRGVLSDD-----TQVAVKKPKEADKIRVSQEFQHEMGIVS 441
           LGEG FG V          + G  + +       VAVK  +         +F  E+ I+S
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMS 72

Query: 442 QINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           ++ + N++++LG+C+      ++ E++ NG L
Sbjct: 73  RLKNPNIIRLLGVCVSDDPLCMITEYMENGDL 104

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 387 ATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQE---F----QHEMG 438
             ++Y+    LGEG FG VY+   +     VA+K      KI +  E   F      E+ 
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALK------KILMHNEKDGFPITALREIK 59

Query: 439 IVSQINHKNVVKIL 452
           I+ ++ H NVV ++
Sbjct: 60  ILKKLKHPNVVPLI 73

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 14/69 (20%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQ-------HEMGIVSQ 442
           Y+K   +GEG +G VY+         VA+K      KIR+  E +        E+ ++ +
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALK------KIRMENEKEGFPITAIREIKLLQK 54

Query: 443 INHKNVVKI 451
           + H N+V++
Sbjct: 55  LRHPNIVRL 63

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPK--EADKIRVSQEFQHEMGIVSQIN 444
             N+     +G+G F  VY+ + L D   VA+KK +  E    +  Q+   E+ ++ Q++
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI-HSKS 481
           H NV+K L   ++     +V E    G L   I H K 
Sbjct: 61  HPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKK 98

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 397 LGEGGFGSVYRG---VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           +G G FG V  G         +V VK+ + +        F  E+    ++NH NV++ LG
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLG 62

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHS 479
            C+++   LLV EF   G L +++ S
Sbjct: 63  QCIESIPYLLVLEFCPLGDLKNYLRS 88

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 397 LGEGGFGSVYR----GVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V      G+  +D   +VAVK  K +      +    E+ I+S +  HKN+V
Sbjct: 46  LGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIV 105

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
            +LG C      L++ E+   G L + +  K+   L
Sbjct: 106 NLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFL 141

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVS-----------QEFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 23  LGEGCFGQV---VMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 79

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 80  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 115

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 397 LGEGGFGSVYRGVL---SDDTQVAVKKPKEADKI---------RVSQEFQHEMGIVSQIN 444
           LG G    +Y G+L    DD        KE   I          +S  F     ++ Q++
Sbjct: 3   LGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVS 62

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           HK++V + G+C++    ++V EFV  G L   +H KS  +   WK
Sbjct: 63  HKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWK 107

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  ++ T+VAVK  K        Q F  E  ++  + H  +V++  +  
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM--SVQAFLEEANLMKTLQHDKLVRLYAVVT 71

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           + +   ++ E+++ G+L   + S     +   K++
Sbjct: 72  KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLI 106

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 397 LGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           +G G FG V  G ++      QV VK+ + +  ++   +F  E      + H N+++ LG
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLG 62

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHS 479
            C +    LLV EF   G L  ++ S
Sbjct: 63  QCTEVTPYLLVMEFCPLGDLKGYLRS 88

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK--PKEADKIRVSQEFQHEMGIVSQINHKN 447
            Y+K   +G G FG V+      D ++ + K  P E          Q+E  ++  ++H N
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           +++     L+ K  ++V E+   GTL  +I  + + +L
Sbjct: 61  IIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLL 98

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  + +T+VAVK  K        + F  E  I+ ++ H  +V++  +  
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPG--TMSPESFLEEAQIMKKLRHDKLVQLYAVVS 71

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +     + LK   +V
Sbjct: 72  EEPI-YIVTEYMSKGSLLDFLKDGEGRALKLPNLV 105

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 397 LGEGGFGSVYRGVL-------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNV 448
           LG G FG V            S +T VAVK  KE       +    E+ I+  I NH NV
Sbjct: 15  LGHGAFGKVVEASAFGIDKKSSCNT-VAVKMLKEGATASEHKALMSELKILIHIGNHLNV 73

Query: 449 VKILGLCLQTKVPLLV-YEFVSNGTLFHHIHSK 480
           V +LG C +   PL+V  EF   G L + + +K
Sbjct: 74  VNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAK 106

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQ-------HEMGIVSQ 442
           +Y K   +GEG +G VY+G      Q+   K     KIR+  E +        E+ ++ +
Sbjct: 1   DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMK-----KIRLESEEEGVPSTAIREISLLKE 55

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVS 469
           + H N+V +  + +Q     L++EF+S
Sbjct: 56  LQHPNIVCLQDVLMQESRLYLIFEFLS 82

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 14/87 (16%)

Query: 397 LGEGGFGSV----YRGVLSDDTQ--VAVKK--PKEADKIRVSQEFQHEMGIVSQINHKNV 448
           LG+G FGSV    Y   L D+T   VAVKK     A+ +R   +F+ E+ I+  + H N+
Sbjct: 12  LGKGNFGSVELCRY-DPLQDNTGEVVAVKKLQHSTAEHLR---DFEREIEILKSLQHDNI 67

Query: 449 VKILGLCLQTKVP--LLVYEFVSNGTL 473
           VK  G+C         LV E++  G+L
Sbjct: 68  VKYKGVCYSAGRRNLRLVMEYLPYGSL 94

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQH-----EMGIVSQIN-HKNVV 449
           +GEG F +V        + + A+K     DK ++ +E +      E  +++++N H  ++
Sbjct: 9   IGEGSFSTVVLAKEKETNKEYAIKI---LDKRQLIKEKKVKYVKIEKEVLTRLNGHPGII 65

Query: 450 KILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
           K+     Q +  L  V E+  NG L  +I    S
Sbjct: 66  KLYY-TFQDEENLYFVLEYAPNGELLQYIRKYGS 98

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 13/89 (14%)

Query: 397 LGEGGFGSVYRGVL--SDDT--QVAVKKPKEADKIRVS--QEFQHEMGIVSQINHKNVVK 450
           LG+G FGSV    L   D +  +VAVK  K AD    S  +EF  E   + + +H NV+K
Sbjct: 7   LGKGEFGSVREAQLKSEDGSFQKVAVKMLK-ADIFSSSDIEEFLREAACMKEFDHPNVIK 65

Query: 451 ILGLCLQTK------VPLLVYEFVSNGTL 473
           ++G+ L+++      +P+++  F+ +G L
Sbjct: 66  LIGVSLRSRAKGRLPIPMVILPFMKHGDL 94

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 391 YDKSNFLGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIR---VSQEFQHEMGIVSQIN 444
           Y+    +G G +G VY+       D  + A+KK K  DK +   +SQ    E+ ++ ++ 
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFK-GDKEQYTGISQSACREIALLRELK 60

Query: 445 HKNVVKILGLCLQ--TKVPLLVYEFVSN---GTLFHHIHSKSSQV 484
           H+NVV ++ + L+   K   L++++  +     +  H  +K   +
Sbjct: 61  HENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSI 105

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 395 NFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVK 450
           + +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++ +H N++ 
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
           +LG C       L  E+  +G L   +  + S+VL+T
Sbjct: 61  LLGACEHRGYLYLAIEYAPHGNLLDFL--RKSRVLET 95

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 390 NYDKSNFLGEGGFGS--VYRGVLSDDTQVAVKKPKEADKIRVSQ----EFQHEMGIVSQI 443
           +Y     LG+G FG   +YR    DD+ V  K   E +  R+S+    +  +E+ I+S +
Sbjct: 1   HYIPIRVLGKGAFGEATLYRRT-EDDSLVVWK---EVNLTRLSEKERRDALNEIVILSLL 56

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
            H N++      +     L+  E+ + GTL+  I  +  Q+ 
Sbjct: 57  QHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLF 98

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 397 LGEGGFGSV--YR-GVLSDDT--QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGEG FG V  Y     +D T   VAVK  K     + +  ++ E+ I+  + H+N+VK 
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 452 LGLCLQT--KVPLLVYEFVSNGTL 473
            G C +   K   L+ E+V  G+L
Sbjct: 72  KGCCSEQGGKGLQLIMEYVPLGSL 95

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 40.8 bits (95), Expect = 9e-04
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKKPK--EADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           +G G F  VYR   L D   VA+KK +  E    +  Q+   E+ ++ Q+NH NV+K L 
Sbjct: 10  IGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLD 69

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
             ++     +V E    G L        SQ++K +K
Sbjct: 70  SFIEDNELNIVLELADAGDL--------SQMIKYFK 97

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K      + + F  E  I+ ++ H  +V +  +  
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPG--TMMPEAFLQEAQIMKKLRHDKLVPLYAVVS 71

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V EF+  G+L   +     + LK  ++V
Sbjct: 72  EEPI-YIVTEFMGKGSLLDFLKEGDGKYLKLPQLV 105

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQH---EMGIVSQINHKNVVKILG 453
           LG+G FG V      D  ++   K  +  KI   +E +H   E  I+S+INH  +VK L 
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVK-LH 59

Query: 454 LCLQTKVPL-LVYEFVSNGTLFHHIHS 479
              QT+  L LV E+   G LF H+  
Sbjct: 60  YAFQTEEKLYLVLEYAPGGELFSHLSK 86

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 30/98 (30%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGI---------- 439
           Y++   +GEG +G+VY+   L+    VA+K      K+RV      E GI          
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVALK------KVRVPLS---EEGIPLSTLREIAL 51

Query: 440 ---VSQINHKNVVKILGLCL------QTKVPLLVYEFV 468
              +    H N+V++L +C       + K+  LV+E V
Sbjct: 52  LKQLESFEHPNIVRLLDVCHGPRTDRELKL-TLVFEHV 88

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPK-EADKIRVSQEFQHEMGIVSQINHKN 447
            Y+K   +GEG +G+V++    +  + VA+K+ + + D   V      E+ ++ ++ HKN
Sbjct: 1   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 60

Query: 448 VVKILGLCLQTKVPLLVYEF 467
           +V++  +    K   LV+E+
Sbjct: 61  IVRLYDVLHSDKKLTLVFEY 80

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQ-------HEMGIVSQ 442
           Y K   +GEG +G VY+         VA+KK      IR+  E +        E+ ++ +
Sbjct: 1   YQKVEKIGEGTYGVVYKARDKLTGEIVALKK------IRLETEDEGVPSTAIREISLLKE 54

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVS 469
           +NH N+V++L +        LV+EF+ 
Sbjct: 55  LNHPNIVRLLDVVHSENKLYLVFEFLD 81

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEF-QHEMGIVSQINHKN 447
            Y+    +GEG +G V +       + VA+KK KE++     ++    E+ ++ Q+ H+N
Sbjct: 2   KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHEN 61

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTL 473
           +V +     +     LV+E+V    L
Sbjct: 62  IVNLKEAFRRKGRLYLVFEYVERTLL 87

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 397 LGEGGFGSVYR----GVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKN 447
           LGEG FG V R    G+          VAVK  K+    +   +   EM ++  I  HKN
Sbjct: 20  LGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKN 79

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           ++ +LG+C Q     ++ E+ + G L   + ++
Sbjct: 80  IINLLGVCTQEGPLYVIVEYAAKGNLREFLRAR 112

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQ-------HEMGIVSQ 442
           N+ K   +GEG +G VY+       +V   K     KIR+  E +        E+ ++ +
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALK-----KIRLDTETEGVPSTAIREISLLKE 55

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVS 469
           +NH N+VK+L +        LV+EF+ 
Sbjct: 56  LNHPNIVKLLDVIHTENKLYLVFEFLH 82

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 371 LKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRV 429
           LK     I SE +  +  KN +K   +GEG  G VY+    +   +VA+K      K+R+
Sbjct: 4   LKAALKDIVSEGDPRELYKNLEK---IGEGASGEVYKATDRATGKEVAIK------KMRL 54

Query: 430 SQEFQ----HEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            ++ +    +E+ I+    H N+V      L      +V E++  G+L
Sbjct: 55  RKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSL 102

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 397 LGEGGFGSVYR----GVLSDDTQ--VAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V      G+   D    VAVK  K +  +   +    E+ ++S + NH N+V
Sbjct: 43  LGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIV 102

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            +LG C      L++ E+   G L + +  K
Sbjct: 103 NLLGACTVGGPTLVITEYCCYGDLLNFLRRK 133

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVS-----------QEFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +  +KP    K+ V             +   EM ++  I  
Sbjct: 26  LGEGCFGQV---VMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGK 82

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 83  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 118

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 390 NYDKSNFLGEGGFGSVYR------GVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
            + K   LG G F S Y+      G L    QV   +   +++  V +  + E+ +++++
Sbjct: 1   EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL 60

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           NH +++++LG   +     L  E+++ G++ H + 
Sbjct: 61  NHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLS 95

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 8/87 (9%)

Query: 394 SNFLGEGGFGSVYRGVLSDDT-----QVAVKKPKE-ADKIRVSQEFQHEMGIVSQINHKN 447
           S+ L EG FG ++ G+L D+      +V VK  K+ A +I+V+   Q    +   ++H+N
Sbjct: 11  SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYG-LSHQN 69

Query: 448 VVKILGLCLQ-TKVPLLVYEFVSNGTL 473
           ++ IL +C++  + P ++Y +++ G L
Sbjct: 70  ILPILHVCIEDGEPPFVLYPYMNWGNL 96

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LGEG +GSVY+ +       VA+K  P E D     QE   E+ I+ Q +   +VK  G
Sbjct: 11  LGEGSYGSVYKAIHKETGQVVAIKVVPVEED----LQEIIKEISILKQCDSPYIVKYYG 65

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 391 YDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNV 448
           Y+    +GEG +G V +    +  Q VA+KK  E+ D   V +    E+ ++ Q+ H+N+
Sbjct: 3   YENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENL 62

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTL 473
           V ++ +  + K   LV+EFV +  L
Sbjct: 63  VNLIEVFRRKKRLYLVFEFVDHTVL 87

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 397 LGEGGFGSVYR------GVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V +         +    VAVK  KE       +    E+ I+  I +H NVV
Sbjct: 15  LGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVV 74

Query: 450 KILGLCLQTKVPLLV-YEFVSNGTLFHHIHSK 480
            +LG C +   PL+V  E+   G L +++ SK
Sbjct: 75  NLLGACTKPGGPLMVIVEYCKFGNLSNYLRSK 106

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 395 NFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVK 450
           + +GEG FG V R ++  D      A+K  KE       ++F  E+ ++ ++ +H N++ 
Sbjct: 8   DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIIN 67

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
           +LG C       +  E+   G L   +  + S+VL+T
Sbjct: 68  LLGACENRGYLYIAIEYAPYGNLLDFL--RKSRVLET 102

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 397 LGEGGFGSVYRGVLSDDTQ--VAVKKPKEADKIRVSQEFQH---EMGIVSQINHKNVVKI 451
           LG G FG V   V    +    A+K   +A  +++ Q  +H   E  I+  I H  +V +
Sbjct: 9   LGTGSFGRVML-VRHKGSGKYYALKILSKAKIVKLKQV-EHVLNEKRILQSIRHPFLVNL 66

Query: 452 LGLCLQTKVPL-LVYEFVSNGTLFHHI 477
            G   Q    L LV E+V  G LF H+
Sbjct: 67  YG-SFQDDSNLYLVMEYVPGGELFSHL 92

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 397 LGEGGFGSVYR----GVLSDDT--QVAVKKPKEADKIRVSQEFQHEMGIVSQINHK-NVV 449
           LG G FG V      G+    T   VAVK  KE       +    E+ I+  I H  NVV
Sbjct: 15  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 74

Query: 450 KILGLCLQTKVPLLV-YEFVSNGTLFHHIHSKSSQ 483
            +LG C +   PL+V  EF   G L +++ SK  +
Sbjct: 75  NLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGE 109

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 397 LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LG G FG + RG L      +  VA+   +     +  + F  E   + Q +H N+V++ 
Sbjct: 13  LGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLE 72

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+  +    ++V E++SNG L
Sbjct: 73  GVITRGNTMMIVTEYMSNGAL 93

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 397 LGEGGFGSVYRGV---LSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVV 449
           LG G FG V  G    LS      +VAVK  K   +    Q    E+ I++ +  H N+V
Sbjct: 45  LGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIV 104

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
            +LG C ++    ++ E+   G L +++H      L
Sbjct: 105 NLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFL 140

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	491
PF13947	106	GUB_WAK_bind: Wall-associated receptor kinase gala	99.94
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.82
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.61
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.58
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.58
KOG3653	534	consensus Transforming growth factor beta/activin	99.51
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.49
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.48
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.47
PF08488	103	WAK: Wall-associated kinase; InterPro: IPR013695 T	99.46
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.46
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.45
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.44
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.43
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.4
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.38
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.29
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.29
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.27
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.23
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.23
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.22
KOG0605	550	consensus NDR and related serine/threonine kinases	99.21
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.21
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.2
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.19
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.18
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.17
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.17
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.16
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.16
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.16
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.15
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.15
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.14
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.14
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.13
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.13
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.13
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.11
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.11
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.11
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.1
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.1
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.09
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.09
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.09
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.08
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.08
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.08
PHA02988	283	hypothetical protein; Provisional	99.07
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.07
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.07
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.06
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.06
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.06
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.06
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.06
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.06
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.06
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.06
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.06
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.06
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.06
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.05
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.05
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.05
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.04
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.04
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.04
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.04
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.03
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.03
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.03
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.03
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.03
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.03
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.02
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.02
KOG0586	596	consensus Serine/threonine protein kinase [General	99.02
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.02
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.02
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.01
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.01
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.01
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.01
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.01
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.01
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.01
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.0
KOG0198	313	consensus MEKK and related serine/threonine protei	98.99
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.99
KOG0661	538	consensus MAPK related serine/threonine protein ki	98.99
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	98.99
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.98
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	98.98
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.98
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	98.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	98.97
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	98.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	98.97
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	98.97
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	98.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	98.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	98.96
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	98.96
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	98.96
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.96
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	98.96
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.96
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.96
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.96
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.96
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.95
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	98.94
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	98.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	98.94
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.94
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.94
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	98.94
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	98.94
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.94
KOG0583	370	consensus Serine/threonine protein kinase [Signal	98.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.93
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	98.93
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	98.93
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.93
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.93
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	98.93
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	98.93
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.93
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	98.93
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.93
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	98.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.93
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	98.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.92
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.92
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	98.92
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.91
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.91
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	98.91
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	98.91
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	98.91
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.91
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.91
PTZ00267	478	NIMA-related protein kinase; Provisional	98.91
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.91
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.91
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.91
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	98.91
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.9
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	98.9
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.9
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	98.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.9
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.9
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.9
KOG0578	550	consensus p21-activated serine/threonine protein k	98.9
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	98.9
KOG0201	467	consensus Serine/threonine protein kinase [Signal	98.9
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.89
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	98.89
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	98.89
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.89
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	98.89
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	98.89
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	98.89
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.88
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	98.88
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.88
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.88
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.88
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.87
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	98.87
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	98.87
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	98.87
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.87
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.87
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	98.87
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	98.87
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	98.87
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.87
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	98.87
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.86
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.86
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.86
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	98.86
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.86
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.86
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.86
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.86
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.86
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.85
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	98.85
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.85
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.85
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.85
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	98.85
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.85
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.85
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	98.85
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.85
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	98.85
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.84
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.84
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	98.84
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.84
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	98.84
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.84
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	98.84
KOG0610	459	consensus Putative serine/threonine protein kinase	98.84
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.83
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.83
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.83
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	98.83
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.83
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.82
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.82
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.82
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.82
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.82
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.82
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.81
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.81
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.81
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.81
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	98.81
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.81
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.81
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.81
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.81
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.81
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.81
KOG0589	426	consensus Serine/threonine protein kinase [General	98.8
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.8
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.79
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	98.79
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.79
PTZ00266	1021	NIMA-related protein kinase; Provisional	98.79
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	98.79
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.79
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.79
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.79
KOG1989	738	consensus ARK protein kinase family [Signal transd	98.79
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.79
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.78
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.78
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.77
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	98.77
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	98.77
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.77
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.77
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	98.76
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.75
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	98.75
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	98.75
KOG0694	694	consensus Serine/threonine protein kinase [Signal	98.75
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.75
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.75
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.74
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.74
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.74
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.74
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.73
PRK09188	365	serine/threonine protein kinase; Provisional	98.73
PTZ00283	496	serine/threonine protein kinase; Provisional	98.73
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.73
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.73
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.73
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.73
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.72
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.71
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.71
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.71
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.71
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.71
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.7
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.7
PHA03212	391	serine/threonine kinase US3; Provisional	98.7
KOG0577	948	consensus Serine/threonine protein kinase [Signal	98.7
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.69
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.69
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.69
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.68
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.68
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.67
PLN00009	294	cyclin-dependent kinase A; Provisional	98.67
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.67
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.67
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.67
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.67
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.66
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.66
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.65
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.65
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.65
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.64
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.64
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.64
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.63
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.63
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.63
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.63
PHA03211	461	serine/threonine kinase US3; Provisional	98.62
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.61
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.61
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.61
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.61
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.6
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.6
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.6
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.59
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.58
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.58
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.58
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.58
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.57
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.56
PHA03209	357	serine/threonine kinase US3; Provisional	98.56
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.55
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.55
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.54
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.53
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.52
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	98.52
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.52
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.52
PTZ00036	440	glycogen synthase kinase; Provisional	98.51
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.51
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.51
PRK10345	210	hypothetical protein; Provisional	98.51
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.51
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.5
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.5
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.5
KOG0584	632	consensus Serine/threonine protein kinase [General	98.5
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.49
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.49
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.49
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.49
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.49
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.48
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.48
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.47
PHA03207	392	serine/threonine kinase US3; Provisional	98.46
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.46
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.46
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.45
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.45
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.44
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.44
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.44
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.44
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.43
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.42
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.42
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.41
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.38
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.37
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.36
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.34
PTZ00284	467	protein kinase; Provisional	98.34
PHA03210	501	serine/threonine kinase US3; Provisional	98.29
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.28
KOG1152	772	consensus Signal transduction serine/threonine kin	98.28
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.28
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.23
PRK14879	211	serine/threonine protein kinase; Provisional	98.22
KOG1219	4289	consensus Uncharacterized conserved protein, conta	98.21
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.21
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.19
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.19
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.18
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.18
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.17
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.16
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.14
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.13
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.12
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.08
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.03
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.01
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	97.99
KOG0695	593	consensus Serine/threonine protein kinase [Signal	97.99
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	97.94
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.76
KOG1027	903	consensus Serine/threonine protein kinase and endo	97.72
KOG0696	683	consensus Serine/threonine protein kinase [Signal	97.71
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	97.66
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.65
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.57
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	97.57
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.57
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.57
smart00090	237	RIO RIO-like kinase.	97.52
PRK12274	218	serine/threonine protein kinase; Provisional	97.44
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	97.39
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.35
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.33
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	97.31
PF12662	24	cEGF: Complement Clr-like EGF-like	97.3
PHA02882	294	putative serine/threonine kinase; Provisional	97.29
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.27
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	97.15
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	97.15
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.14
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.13
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	97.08
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	97.03
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.01
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	96.98
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.7
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.69
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.68
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.64
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	96.52
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.42
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.31
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	96.24
KOG1219	4289	consensus Uncharacterized conserved protein, conta	96.07
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	95.74
KOG4260	350	consensus Uncharacterized conserved protein [Funct	95.3
KOG4289	2531	consensus Cadherin EGF LAG seven-pass G-type recep	95.0
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	94.96
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	94.94
KOG1214	1289	consensus Nidogen and related basement membrane pr	94.66
COG0661	517	AarF Predicted unusual protein kinase [General fun	94.06
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	94.0
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	93.53
PF14380	94	WAK_assoc: Wall-associated receptor kinase C-termi	93.1
PF00954	110	S_locus_glycop: S-locus glycoprotein family; Inter	92.89
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	92.51
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	92.5
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	92.03
cd00053	36	EGF Epidermal growth factor domain, found in epide	91.94
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	91.85
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	91.53
KOG4289	2531	consensus Cadherin EGF LAG seven-pass G-type recep	91.5
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	90.04
KOG1235	538	consensus Predicted unusual protein kinase [Genera	89.94
smart00181	35	EGF Epidermal growth factor-like domain.	89.37
PRK10593	297	hypothetical protein; Provisional	89.17
PLN02876	822	acyl-CoA dehydrogenase	89.03
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	88.95
KOG4260	350	consensus Uncharacterized conserved protein [Funct	88.89
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	88.74
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	88.51
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	88.14
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	87.99
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	87.9
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	87.6
KOG1243	690	consensus Protein kinase [General function predict	86.62
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	86.03
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	85.64
KOG3087	229	consensus Serine/threonine protein kinase [General	84.87
PRK09550	401	mtnK methylthioribose kinase; Reviewed	84.02
cd00053	36	EGF Epidermal growth factor domain, found in epide	83.69
smart00181	35	EGF Epidermal growth factor-like domain.	82.04
PF01636	239	APH: Phosphotransferase enzyme family This family	81.79
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	80.76

>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding

Probab=99.94  E-value=5.8e-27  Score=192.78  Aligned_cols=105  Identities=44%  Similarity=0.845  Sum_probs=90.5

Q ss_pred             CCCCcCCCCCccccCcCCCCCCCCcCCCCceeecCCCCCCCceecc-cceEEEEEeecCCeeEEeEeeeeeecCCCCCcc
Q 011189           30 RPGCEEKCGDVSVPYPFGIDDPKCAMDKYFFLNCNRSVSSPQLLFG-INIEVFNISIEDGTMIGSIWTAQRCYNDLGGCN  108 (491)
Q Consensus        30 ~~~C~~~CG~v~I~yPFgi~~~~C~~~~~f~l~C~~~~~~~~l~~~-~~~~v~~i~~~~~~~~v~~~~~~~c~~~~~~~~  108 (491)
                      +++||++||||+|||||||+ ++|+++|+|+|+|++++++|+|++. .+|+|++|+|++++++|..++.+.|........
T Consensus         1 ~~~C~~~CGnv~IpYPFgi~-~~C~~~~~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~~~~   79 (106)
T PF13947_consen    1 KPGCPSSCGNVSIPYPFGIG-PGCGRDPGFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSSSSSNS   79 (106)
T ss_pred             CCCCCCccCCEeecCCCccC-CCCCCCCCcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecCCCCcc
Confidence            47899999999999999999 7999999999999999888888875 899999999999999999999998887743221


Q ss_pred             ccceeeecCCCCeEEecCCCeEEEEeeee
Q 011189          109 YTDVRIDLGEGPFKFSDTRNKLTAFGCDT  137 (491)
Q Consensus       109 ~~~~~~~l~~~pf~~s~~~n~~~~~gC~~  137 (491)
                       ....+++.. ||.+|+.+|+|+++||++
T Consensus        80 -~~~~~~~~~-~~~~s~~~N~~~~~GC~t  106 (106)
T PF13947_consen   80 -SNSNLSLNG-PFFFSSSSNKFTVVGCNT  106 (106)
T ss_pred             -cccEEeecC-CceEccCCcEEEEECCCC
Confidence             133566666 899999999999999985

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=6.2e-20  Score=183.33  Aligned_cols=114  Identities=47%  Similarity=0.802  Sum_probs=102.3

Q ss_pred             ceeeecHHHHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeE
Q 011189          375 RVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGL  454 (491)
Q Consensus       375 ~~~~~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~  454 (491)
                      ....|++++++++|++|...+.||+|+||.||+|.+++++.||||++....... ..+|.+|++++++++|||+|+|+|+
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG-EREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc-hhHHHHHHHHHhcCCCcCcccEEEE
Confidence            344799999999999999999999999999999999999999999887765422 4569999999999999999999999


Q ss_pred             EEeCC-ccEEEEeccCCCChhhhhccCCCCccccccC
Q 011189          455 CLQTK-VPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI  490 (491)
Q Consensus       455 ~~~~~-~~~lv~Ey~~~GsL~~~L~~~~~~~~l~W~~  490 (491)
                      |.+.+ +++||||||++|+|.++|+.+... .|+|++
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~  175 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWET  175 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHH
Confidence            99999 599999999999999999987654 789964

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.61  E-value=3.1e-16  Score=161.23  Aligned_cols=99  Identities=25%  Similarity=0.449  Sum_probs=87.4

Q ss_pred             ccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..+.++||.|.||.|++|.++    ....||||.++....+..+.+|+.|+.||.+++||||++|.|+....++.+||.|
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTE  710 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITE  710 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhh
Confidence            355688999999999999975    3458999999988776788999999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCCCCccccccCC
Q 011189          467 FVSNGTLFHHIHSKSSQVLKTWKIV  491 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~~~~l~W~~l  491 (491)
                      ||+||+|..||+.+..+  ++|-+|
T Consensus       711 yMENGsLDsFLR~~DGq--ftviQL  733 (996)
T KOG0196|consen  711 YMENGSLDSFLRQNDGQ--FTVIQL  733 (996)
T ss_pred             hhhCCcHHHHHhhcCCc--eEeehH
Confidence            99999999999988643  666544

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.58  E-value=4.6e-15  Score=143.00  Aligned_cols=94  Identities=26%  Similarity=0.452  Sum_probs=83.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..+|...+.||+|+|++||+|+++ ++..||||.+.... ....++.+..|+.+|++++|||||+|+.+++.++..+|||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            346777778999999999999964 57899999987653 3356677899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+.+|||.+||+.++
T Consensus        89 EyC~gGDLs~yi~~~~  104 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRG  104 (429)
T ss_pred             EeCCCCCHHHHHHHcC
Confidence            9999999999999874

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=5.4e-16  Score=162.02  Aligned_cols=95  Identities=28%  Similarity=0.560  Sum_probs=84.1

Q ss_pred             hccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      +.+.+..+.||+|+||+||+|+..      +...||||.++.....+..++|.||++++..++|||||+|+|+|.++++.
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            344555678999999999999842      35689999999887766789999999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccCCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                      +||+|||.+|||.+||+.+++
T Consensus       565 ~MvFEYm~~GDL~eFLra~sP  585 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRARSP  585 (774)
T ss_pred             EEEEEecccccHHHHHHhhCC
Confidence            999999999999999997643

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.51  E-value=1.2e-14  Score=142.25  Aligned_cols=93  Identities=30%  Similarity=0.495  Sum_probs=78.5

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHc--CCCCccccEEeEEEeCC----ccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ--INHKNVVKILGLCLQTK----VPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~----~~~  462 (491)
                      +.+...++||+|+||.||||.+ +++.||||++...    +.+.|++|-.|++.  ++|+||+++++......    +++
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~~----~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eyw  284 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPEQ----EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYW  284 (534)
T ss_pred             CchhhHHHhhcCccceeehhhc-cCceeEEEecCHH----HHHHHHhHHHHHhccCccchhHHHhhchhccCCcccccee
Confidence            3445567899999999999999 6699999999763    45789999998875  58999999999986655    889


Q ss_pred             EEEeccCCCChhhhhccCCCCccccccC
Q 011189          463 LVYEFVSNGTLFHHIHSKSSQVLKTWKI  490 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~~~~~l~W~~  490 (491)
                      ||+||.++|+|.+||+.+.    ++|..
T Consensus       285 LVt~fh~kGsL~dyL~~nt----isw~~  308 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLKANT----ISWNS  308 (534)
T ss_pred             EEeeeccCCcHHHHHHhcc----ccHHH
Confidence            9999999999999999873    67764

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.49  E-value=2.3e-14  Score=142.89  Aligned_cols=85  Identities=31%  Similarity=0.578  Sum_probs=77.9

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      .+.||+|.||.||.|.++....||+|.++....  ..++|.+|+.+|++|+|+|||+|+|+|..+++.+||||||++|+|
T Consensus       211 ~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m--~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsL  288 (468)
T KOG0197|consen  211 IRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM--SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSL  288 (468)
T ss_pred             HHHhcCCccceEEEEEEcCCCcccceEEecccc--ChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcH
Confidence            366999999999999998777999999987643  457899999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 011189          474 FHHIHSK  480 (491)
Q Consensus       474 ~~~L~~~  480 (491)
                      .+||+..
T Consensus       289 l~yLr~~  295 (468)
T KOG0197|consen  289 LDYLRTR  295 (468)
T ss_pred             HHHhhhc
Confidence            9999983

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.48  E-value=1.2e-13  Score=149.66  Aligned_cols=93  Identities=34%  Similarity=0.637  Sum_probs=83.1

Q ss_pred             ccccccceeccCCcceEEEEEEcC--C----cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD--D----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~--~----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      +..+..+.||+|+||.||.|.+.+  +    ..||+|.++...+.++..+|++|..+|++++|||||+|+|++.....++
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            445566889999999999999753  2    3599999988877788899999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      |++|||++|||..||++.+
T Consensus       772 i~leyM~gGDL~sflr~~r  790 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESR  790 (1025)
T ss_pred             EEehhcccCcHHHHHHhcc
Confidence            9999999999999999874

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.47  E-value=6.3e-14  Score=136.34  Aligned_cols=87  Identities=23%  Similarity=0.432  Sum_probs=75.8

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHc--CCCCccccEEeEEEeCC----ccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ--INHKNVVKILGLCLQTK----VPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~----~~~  462 (491)
                      ..+...+.||+|.||.||+|.| .|..||||++...++    +.|.+|.+|+..  |+|+||+.+++.-...+    ++|
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srdE----~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRDE----RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             heeEEEEEecCccccceeeccc-cCCceEEEEecccch----hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            4566678899999999999999 688999999987654    678899999886  49999999999987654    789


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      ||.||.++|||++||.++
T Consensus       286 LvTdYHe~GSL~DyL~r~  303 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRN  303 (513)
T ss_pred             EeeecccCCcHHHHHhhc
Confidence            999999999999999975

>PF08488 WAK: Wall-associated kinase; InterPro: IPR013695 This domain is found together with the eukaryotic protein kinase domain IPR000719 from INTERPRO in plant wall-associated kinases (WAKs) and related proteins

Probab=99.46  E-value=2.5e-13  Score=109.41  Aligned_cols=99  Identities=32%  Similarity=0.656  Sum_probs=67.8

Q ss_pred             CCCCCCccccccccCCCC-ceEEEEEEeccCCCccCCCCCcceeeeeccccccccc-ccccCCCC-CCceEEEEEeccCC
Q 011189          165 ENSCSGIGCCHTPLPKST-KSLNVTLRSAYNHSRLGNFMPCDYAFLADETFNLLDF-QLSDYDKS-SSNAKIEWVVKEGK  241 (491)
Q Consensus       165 ~~~C~g~gCC~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~c~~a~~~~~~~~~~~~-~~~~~~~~-~~~~~l~W~i~~~~  241 (491)
                      +++|+|.+|||+.||.++ +.+.+++... +.. .....+|++||++++.|...+. +...+.+. .+||+|+|.|...+
T Consensus         1 n~~CsG~~CCQt~iP~~~~qv~~~~i~~~-~~~-~~~~~~Ck~AFL~d~~~~~~n~t~p~~~~~~~y~pv~L~W~i~t~~   78 (103)
T PF08488_consen    1 NSSCSGIGCCQTSIPSGLLQVFNVTIEST-DGN-NQTSNGCKVAFLVDEDWFSSNITDPEDFHAMGYVPVVLDWFIDTSD   78 (103)
T ss_pred             CCccCCcceeccCCCCCCceEEEEEeEec-CCC-cccCCCceEEEEeccccccccCCChHHhccCCeeEEEEEEEEecCC
Confidence            468999999999999975 6789988765 321 2344899999999999433333 33335544 79999999997654


Q ss_pred             CCCCCCCCCcCCCCCCeeecCCCCCCeeeeeC
Q 011189          242 CPDDQNSNVYRCGDNTNCDYSENGEGYRCLCK  273 (491)
Q Consensus       242 C~~~~~~~~~~C~~~~~C~~~~~~~g~~C~C~  273 (491)
                      ...   ...++|..+..  +..   ..+|.|.
T Consensus        79 ~~~---~~s~~C~~~~~--y~~---~~~C~C~  102 (103)
T PF08488_consen   79 SSF---SNSLACKNNTE--YSS---SNRCSCS  102 (103)
T ss_pred             cCc---CcCccCCCcee--ccC---CCcEeCC
Confidence            321   23478886655  211   2378885

WAKs are serine-threonine kinases which might be involved in signalling to the cytoplasm and are required for cell expansion []. ; GO: 0004674 protein serine/threonine kinase activity, 0016021 integral to membrane

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.46  E-value=1.5e-13  Score=136.80  Aligned_cols=95  Identities=29%  Similarity=0.502  Sum_probs=79.3

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-ccEEEEeccCCC
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-VPLLVYEFVSNG  471 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~Ey~~~G  471 (491)
                      .+.||+|+||+||+|.++....||||++..... ....++|.+|+.+|.+++|||||+|+|++.+.. ...||||||++|
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G  125 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGG  125 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence            355999999999999995555599999876532 123678999999999999999999999999988 789999999999


Q ss_pred             ChhhhhccCCCCcccccc
Q 011189          472 TLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       472 sL~~~L~~~~~~~~l~W~  489 (491)
                      +|.++|+.. ....++|+
T Consensus       126 sL~~~l~~~-~~~~l~~~  142 (362)
T KOG0192|consen  126 SLSVLLHKK-RKRKLPLK  142 (362)
T ss_pred             cHHHHHhhc-ccCCCCHH
Confidence            999999985 22356664

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.45  E-value=7.6e-14  Score=139.64  Aligned_cols=94  Identities=27%  Similarity=0.473  Sum_probs=85.8

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++.....++||+|.||.|...+......||||+++.......+.+|.+|+++|.+++|||||+|+|+|..+++..+|+||
T Consensus       537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence            34455678899999999999999778999999999987766779999999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      |++|+|.+||..+.
T Consensus       617 mEnGDLnqFl~ahe  630 (807)
T KOG1094|consen  617 MENGDLNQFLSAHE  630 (807)
T ss_pred             HhcCcHHHHHHhcc
Confidence            99999999998764

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.44  E-value=3.2e-13  Score=136.71  Aligned_cols=95  Identities=31%  Similarity=0.483  Sum_probs=80.1

Q ss_pred             hccccccceeccCCcceEEEEEEcC--C--cE-EEEEecccc--chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD--D--TQ-VAVKKPKEA--DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~--~--~~-vavK~l~~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      .++....++||+|+||.||+|.+..  +  .. ||||..+..  .......+|++|+++|++++|||||+|+|+.....+
T Consensus       156 H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P  235 (474)
T KOG0194|consen  156 HSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP  235 (474)
T ss_pred             ccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc
Confidence            3444455789999999999999643  2  23 899998752  333567899999999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                      ++||||+++||+|.+||+....
T Consensus       236 l~ivmEl~~gGsL~~~L~k~~~  257 (474)
T KOG0194|consen  236 LMLVMELCNGGSLDDYLKKNKK  257 (474)
T ss_pred             cEEEEEecCCCcHHHHHHhCCC
Confidence            9999999999999999998753

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.43  E-value=6.3e-14  Score=145.06  Aligned_cols=88  Identities=27%  Similarity=0.533  Sum_probs=77.1

Q ss_pred             cceeccCCcceEEEEEE-cCC----cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          394 SNFLGEGGFGSVYRGVL-SDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~-~~~----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .++||+|+||+||||.+ ..+    .+||+|.+..........+|+.|+-+|.+++|||+++|+|+|.... +.||++||
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~m  779 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQLM  779 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHhc
Confidence            47899999999999986 333    4799999887766567789999999999999999999999998776 77999999


Q ss_pred             CCCChhhhhccCCC
Q 011189          469 SNGTLFHHIHSKSS  482 (491)
Q Consensus       469 ~~GsL~~~L~~~~~  482 (491)
                      |.|+|.+|++.++.
T Consensus       780 P~G~LlDyvr~hr~  793 (1177)
T KOG1025|consen  780 PLGCLLDYVREHRD  793 (1177)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999998754

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=6.1e-13  Score=128.42  Aligned_cols=94  Identities=27%  Similarity=0.431  Sum_probs=79.3

Q ss_pred             hccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhh------HHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIR------VSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      .+.|...+.||+|+||.|-++. .++++.||||++.......      ......+|+++|.+++|||||++++.+..++.
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            3456677899999999999997 4679999999987543111      12335799999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .|||||||++|+|++++..++
T Consensus       251 ~YmVlE~v~GGeLfd~vv~nk  271 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVANK  271 (475)
T ss_pred             eEEEEEEecCccHHHHHHhcc
Confidence            999999999999999998764

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.38  E-value=2.8e-13  Score=136.33  Aligned_cols=98  Identities=29%  Similarity=0.493  Sum_probs=85.4

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ++.+..+.++...++||-|.||.||.|.|+. ...||||.++....  ..++|+.|+.+|+.++|||+|+|+|+|....+
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM--eveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcch--hHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            3344444556667899999999999999854 67899999988765  57899999999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .|||+|||..|+|.+||++-.
T Consensus       338 FYIiTEfM~yGNLLdYLRecn  358 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECN  358 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhc
Confidence            999999999999999999753

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=9.2e-12  Score=126.06  Aligned_cols=92  Identities=25%  Similarity=0.439  Sum_probs=82.5

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..|...++||+|||+++|.++. ..|..||+|.+....  +....+...+|++|.++|+|||||++++++.+.+..|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4678889999999999999995 789999999987642  3346688999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      |++++|+|.++++++
T Consensus        98 ELC~~~sL~el~Krr  112 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRR  112 (592)
T ss_pred             EecCCccHHHHHHhc
Confidence            999999999999954

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=4.3e-12  Score=125.58  Aligned_cols=91  Identities=25%  Similarity=0.438  Sum_probs=77.1

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  464 (491)
                      +.|+..+.||+|.||.|||++ +.+++.||+|+++-.. +++......|||.||++|+||||++|.+...+.  ...|||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            345556789999999999998 5689999999987654 334566778999999999999999999999887  689999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +|||++ ||.-++.+.
T Consensus       197 FeYMdh-DL~GLl~~p  211 (560)
T KOG0600|consen  197 FEYMDH-DLSGLLSSP  211 (560)
T ss_pred             Eecccc-hhhhhhcCC
Confidence            999986 888888764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.27  E-value=8.9e-12  Score=141.95  Aligned_cols=87  Identities=23%  Similarity=0.444  Sum_probs=73.9

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ...+...++||+|+||.||+|.. .++..||+|+++....     ...+|++++++++|||||+++|++...+..++|||
T Consensus       689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~E  763 (968)
T PLN00113        689 LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-----IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHE  763 (968)
T ss_pred             HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc-----ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEe
Confidence            34567778999999999999986 5788999999865432     11246888999999999999999999999999999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      |+++|+|.++|+.
T Consensus       764 y~~~g~L~~~l~~  776 (968)
T PLN00113        764 YIEGKNLSEVLRN  776 (968)
T ss_pred             CCCCCcHHHHHhc
Confidence            9999999999963

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.23  E-value=2.9e-11  Score=116.59  Aligned_cols=93  Identities=26%  Similarity=0.448  Sum_probs=80.2

Q ss_pred             ccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||.||+|.++    .+..||+|.++..........|.+|+.++.+++||||+++++.+...+..+||
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            45677789999999999999853    35689999988654434557899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus        85 ~e~~~~~~L~~~l~~~~  101 (266)
T cd05064          85 TEYMSNGALDSFLRKHE  101 (266)
T ss_pred             EEeCCCCcHHHHHHhCC
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.23  E-value=3e-11  Score=123.41  Aligned_cols=94  Identities=27%  Similarity=0.450  Sum_probs=80.7

Q ss_pred             hhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTK  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~  459 (491)
                      ..++|...++||+|+||.||+|...      ....||+|+++........+.|.+|+.++.+++ ||||+++++++...+
T Consensus        35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~  114 (400)
T cd05105          35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG  114 (400)
T ss_pred             cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            3567778899999999999999852      134699999976554455678999999999996 999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+|||||+++|+|.++|+.+
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         115 PIYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             ceEEEEEecCCCcHHHHHHHh
Confidence            999999999999999999865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.22  E-value=1.2e-11  Score=113.20  Aligned_cols=91  Identities=26%  Similarity=0.462  Sum_probs=78.6

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...++||+|.||.||+|. ...++.||||+++.... .......+||+..|++++|+||+.|++++...+...||+||
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf   82 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF   82 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence            46667889999999999998 46789999999986542 12346689999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      |+ .||...|+++.
T Consensus        83 m~-tdLe~vIkd~~   95 (318)
T KOG0659|consen   83 MP-TDLEVVIKDKN   95 (318)
T ss_pred             cc-ccHHHHhcccc
Confidence            97 59999999764

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.21  E-value=2.1e-11  Score=121.63  Aligned_cols=94  Identities=18%  Similarity=0.305  Sum_probs=83.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|.....||+|+||.||.++- ..|..+|+|+++....  ..+++....|-.+|...++++||+|+..+...+.+|||
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLi  219 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLI  219 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEE
Confidence            46888899999999999999984 4689999999987642  24567789999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+||||+..+|...+
T Consensus       220 MEylPGGD~mTLL~~~~  236 (550)
T KOG0605|consen  220 MEYLPGGDMMTLLMRKD  236 (550)
T ss_pred             EEecCCccHHHHHHhcC
Confidence            99999999999998765

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=7.3e-12  Score=113.03  Aligned_cols=93  Identities=25%  Similarity=0.465  Sum_probs=80.7

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|+..+.||+|.||.||.++.+ ..-.||+|.+....  ..+..+++.+|++|-+.|+||||+++++++.+....+|+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            457888899999999999999864 56789999986543  213346799999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||.++|+|+..|++.
T Consensus       101 lEya~~gel~k~L~~~  116 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEG  116 (281)
T ss_pred             EEecCCchHHHHHHhc
Confidence            9999999999999954

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.20  E-value=3.2e-11  Score=122.42  Aligned_cols=94  Identities=27%  Similarity=0.459  Sum_probs=80.4

Q ss_pred             hccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      .++|...+.||+|+||.||++..      +.+..||+|.++........+.+.+|+.++..+ +||||+++++.+...+.
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~  113 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP  113 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence            45677789999999999999963      235689999987654334557899999999999 89999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++||||+++|+|.++|+..+
T Consensus       114 ~~lv~E~~~~g~L~~~l~~~~  134 (375)
T cd05104         114 TLVITEYCCYGDLLNFLRRKR  134 (375)
T ss_pred             ceeeehhccCCcHHHHHHhcc
Confidence            999999999999999998654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.19  E-value=6.3e-11  Score=113.61  Aligned_cols=88  Identities=17%  Similarity=0.215  Sum_probs=78.5

Q ss_pred             ccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-ccEEEEeccCC
Q 011189          393 KSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-VPLLVYEFVSN  470 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~Ey~~~  470 (491)
                      ..+.||+|..|+|||+.++ .++.+|+|.+....++...++..+|++++++.+||+||+++|++.... ...|+||||.+
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDg  162 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDG  162 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCC
Confidence            3467999999999999975 578999999976666567789999999999999999999999999988 59999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++++.-
T Consensus       163 GSLd~~~k~~  172 (364)
T KOG0581|consen  163 GSLDDILKRV  172 (364)
T ss_pred             CCHHHHHhhc
Confidence            9999999853

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.18  E-value=7.8e-11  Score=120.40  Aligned_cols=96  Identities=27%  Similarity=0.435  Sum_probs=81.0

Q ss_pred             HhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeC
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQT  458 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  458 (491)
                      ...+++...++||+|+||.||++.++      .++.||+|+++........+.+.+|+.++.++. |||||++++.+...
T Consensus        34 ~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~  113 (401)
T cd05107          34 MPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKG  113 (401)
T ss_pred             ecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC
Confidence            34456777789999999999999863      235799999976544344567999999999997 99999999999998


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++|+||+++|+|.++|+..+
T Consensus       114 ~~~~iv~E~~~~g~L~~~l~~~~  136 (401)
T cd05107         114 GPIYIITEYCRYGDLVDYLHRNK  136 (401)
T ss_pred             CCcEEEEeccCCCcHHHHHHhcc
Confidence            99999999999999999998654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.17  E-value=1.2e-10  Score=114.57  Aligned_cols=92  Identities=26%  Similarity=0.446  Sum_probs=78.4

Q ss_pred             ccccccceeccCCcceEEEEEEcC-----------------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-----------------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI  451 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-----------------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l  451 (491)
                      .+|...+.||+|+||.||++..++                 +..||+|.+..........+|.+|+.++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            456777899999999999997532                 236999998765443456789999999999999999999


Q ss_pred             EeEEEeCCccEEEEeccCCCChhhhhccC
Q 011189          452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       452 ~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++...+..+|||||+++|+|.++|...
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  113 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSH  113 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhc
Confidence            99999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.17  E-value=1.6e-11  Score=118.31  Aligned_cols=92  Identities=23%  Similarity=0.434  Sum_probs=79.8

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|.||+|-++. ...|+.||||.++...  ..+..-...+|++||+.|+||||+.++.++...+...||||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            45556779999999999997 4679999999987653  32445668899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |..+|+|++||.+.+
T Consensus       134 YaS~GeLYDYiSer~  148 (668)
T KOG0611|consen  134 YASGGELYDYISERG  148 (668)
T ss_pred             ecCCccHHHHHHHhc
Confidence            999999999998764

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.16  E-value=1.7e-11  Score=126.01  Aligned_cols=92  Identities=33%  Similarity=0.575  Sum_probs=79.5

Q ss_pred             cccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe------CCccEEE
Q 011189          392 DKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ------TKVPLLV  464 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~~~lv  464 (491)
                      ...+.||+|+||.||+|+. ..|+.||||..+.......++.+.+|+++|++++|+|||++++.-.+      .+.+.+|
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            3446799999999999994 57999999999886655677899999999999999999999998754      3478899


Q ss_pred             EeccCCCChhhhhccCCCC
Q 011189          465 YEFVSNGTLFHHIHSKSSQ  483 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~~~  483 (491)
                      |||+++|||+..|.+..+.
T Consensus        96 mEyC~gGsL~~~L~~PEN~  114 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENA  114 (732)
T ss_pred             EeecCCCcHHHHhcCcccc
Confidence            9999999999999986543

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.16  E-value=5.5e-11  Score=114.23  Aligned_cols=87  Identities=34%  Similarity=0.611  Sum_probs=74.7

Q ss_pred             cceeccCCcceEEEEEEc-----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          394 SNFLGEGGFGSVYRGVLS-----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .+.||.|.||.||+|.+.     .+..|+||.++........+.|.+|+..+++++||||++++|++...+..++|+||+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~   83 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC   83 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            467999999999999986     256899999976555455789999999999999999999999999888899999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++|+|.++|+..
T Consensus        84 ~~g~L~~~L~~~   95 (259)
T PF07714_consen   84 PGGSLDDYLKSK   95 (259)
T ss_dssp             TTEBHHHHHHHT
T ss_pred             cccccccccccc
Confidence            999999999987

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.16  E-value=5.2e-11  Score=114.08  Aligned_cols=94  Identities=22%  Similarity=0.411  Sum_probs=82.5

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchh--hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKI--RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|+..++||+|+||+|++.+. +.++.+|+|.+++..-.  .+.+...+|..+|.+++||.||+|...+.+.+.+|||
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            46788899999999999999985 46789999998765321  3467788999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||+.||+|+-+|.+++
T Consensus       104 ld~~~GGeLf~hL~~eg  120 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREG  120 (357)
T ss_pred             EeccCCccHHHHHHhcC
Confidence            99999999999999764

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.15  E-value=7.5e-11  Score=117.88  Aligned_cols=93  Identities=31%  Similarity=0.483  Sum_probs=77.7

Q ss_pred             hccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC-
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK-  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~-  459 (491)
                      .++|...+.||+|+||.||++..      ..++.||+|.++........+.+.+|+.++.++ +||||+++++.+...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            45677789999999999999974      234679999987654434557899999999999 8999999999887654 


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++||||+++|+|.++|+..
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~  106 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAK  106 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhc
Confidence            578999999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=2.7e-12  Score=118.29  Aligned_cols=92  Identities=27%  Similarity=0.417  Sum_probs=76.5

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeE-EEeCCc-cEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGL-CLQTKV-PLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~-~~~~~~-~~lv  464 (491)
                      .+|.+.+.||+|.||+|||+. +.++..+|.|.+.-.. +....+....|+.+|++|+|||||++++. +.+..+ +.||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            456667889999999999997 6689999999987432 33456889999999999999999999984 444444 8899


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+.+|||.+.|+.-
T Consensus        99 mE~c~~GDLsqmIk~~  114 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHF  114 (375)
T ss_pred             HHhhcccCHHHHHHHH
Confidence            9999999999999863

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.14  E-value=1.3e-10  Score=111.25  Aligned_cols=91  Identities=27%  Similarity=0.487  Sum_probs=79.1

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|...+.||+|+||.||++.++++..+|+|.+.....  ..+.|.+|+.++++++||||+++++.+...+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM--SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc--cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            34666788999999999999988888899998865432  3467899999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.++++...
T Consensus        82 ~~~~L~~~~~~~~   94 (256)
T cd05114          82 ENGCLLNYLRQRQ   94 (256)
T ss_pred             CCCcHHHHHHhCc
Confidence            9999999998653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.14  E-value=1.8e-10  Score=110.81  Aligned_cols=93  Identities=25%  Similarity=0.482  Sum_probs=80.4

Q ss_pred             ccccccceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||.||+|.+..    ...||+|.++.........+|.+|+.++++++|+||+++++.....+..+++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            457778899999999999998742    4579999987655445567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++++...
T Consensus        84 ~e~~~~~~L~~~~~~~~  100 (266)
T cd05033          84 TEYMENGSLDKFLREND  100 (266)
T ss_pred             EEcCCCCCHHHHHHhcc
Confidence            99999999999998654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.13  E-value=9.1e-11  Score=118.69  Aligned_cols=92  Identities=28%  Similarity=0.529  Sum_probs=78.9

Q ss_pred             cccccceeccCCcceEEEEEEcC---C--cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD---D--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~---~--~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .+...+.||+|.||.||+|.+.+   |  ..||||.-+....+...+.|+.|+.+|++++|||||+|+|+|.+. +.|||
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~-P~Wiv  468 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-PMWIV  468 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc-ceeEE
Confidence            44556789999999999998632   2  368999988776667789999999999999999999999999765 67899


Q ss_pred             EeccCCCChhhhhccCCC
Q 011189          465 YEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~~  482 (491)
                      ||..+-|.|.+||+.++.
T Consensus       469 mEL~~~GELr~yLq~nk~  486 (974)
T KOG4257|consen  469 MELAPLGELREYLQQNKD  486 (974)
T ss_pred             EecccchhHHHHHHhccc
Confidence            999999999999998764

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.13  E-value=2.5e-10  Score=113.98  Aligned_cols=93  Identities=17%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|+..+.||+|+||.||++... .+..+|+|.+.........+.+.+|++++.+++|+||+++++++...+..+||||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            357888899999999999999865 5778999988765433455779999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus        84 ~~~~~~L~~~l~~~   97 (333)
T cd06650          84 HMDGGSLDQVLKKA   97 (333)
T ss_pred             cCCCCcHHHHHHHc
Confidence            99999999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.13  E-value=4.5e-11  Score=120.82  Aligned_cols=98  Identities=24%  Similarity=0.509  Sum_probs=82.5

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ++.+...+.+...+.||+|.||+||+|.|..  .||||.+.... .++..++|.+|+..+++.+|.||+-+.|++..++.
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~  462 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL  462 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce
Confidence            3444444555667889999999999999853  49999997653 33567999999999999999999999999998887


Q ss_pred             cEEEEeccCCCChhhhhccCCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                       .||..++++-+|+.+||..+.
T Consensus       463 -AIiTqwCeGsSLY~hlHv~et  483 (678)
T KOG0193|consen  463 -AIITQWCEGSSLYTHLHVQET  483 (678)
T ss_pred             -eeeehhccCchhhhhccchhh
Confidence             999999999999999997653

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.11  E-value=3.5e-10  Score=109.10  Aligned_cols=85  Identities=29%  Similarity=0.435  Sum_probs=73.5

Q ss_pred             eeccCCcceEEEEEEcC---CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          396 FLGEGGFGSVYRGVLSD---DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~~---~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .||+|+||.||+|...+   +..+++|.++..........|.+|+.++++++||||+++++.+.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            58999999999998643   357999998765543445679999999999999999999999999889999999999999


Q ss_pred             hhhhhccC
Q 011189          473 LFHHIHSK  480 (491)
Q Consensus       473 L~~~L~~~  480 (491)
                      |.++|+..
T Consensus        82 L~~~l~~~   89 (269)
T cd05087          82 LKGYLRSC   89 (269)
T ss_pred             HHHHHHHh
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.11  E-value=2.2e-10  Score=116.55  Aligned_cols=92  Identities=18%  Similarity=0.270  Sum_probs=79.0

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .|...+.||+|+||+||++.. ..++.+|+|.+....  .....+.+.+|+.++.+++|+||+++++.+.+.+..+||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            466778999999999999985 457899999986542  22345679999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|.+..
T Consensus        82 ~~~gg~L~~~l~~~~   96 (381)
T cd05626          82 YIPGGDMMSLLIRME   96 (381)
T ss_pred             cCCCCcHHHHHHhcC
Confidence            999999999997653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.11  E-value=3.4e-10  Score=112.90  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=80.8

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||.||++... .+..+|+|.+.........+.+.+|++++.+++||||+++++++...+..++||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeec
Confidence            56778889999999999999864 57889999887654434557899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++..
T Consensus        85 ~~~~~L~~~l~~~   97 (331)
T cd06649          85 MDGGSLDQVLKEA   97 (331)
T ss_pred             CCCCcHHHHHHHc
Confidence            9999999999764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.10  E-value=2.2e-10  Score=109.93  Aligned_cols=90  Identities=24%  Similarity=0.478  Sum_probs=80.1

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|+..++||+|++|.||++...++..+|+|.+.....  ..+.+.+|+.++++++|+||+++++.....+..++++||+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM--SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch--hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecC
Confidence            46777889999999999999988888999999875432  3578999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++|+|.++|++.
T Consensus        84 ~~~~L~~~l~~~   95 (261)
T cd05072          84 AKGSLLDFLKSD   95 (261)
T ss_pred             CCCcHHHHHHHh
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.10  E-value=3.6e-10  Score=107.55  Aligned_cols=87  Identities=37%  Similarity=0.647  Sum_probs=76.8

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChh
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLF  474 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~  474 (491)
                      ++||+|+||.||++..++++.+|+|.+...........|.+|+.++.+++||||+++++.+...+..++||||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            36899999999999988889999999876544344567999999999999999999999999999999999999999999


Q ss_pred             hhhccCC
Q 011189          475 HHIHSKS  481 (491)
Q Consensus       475 ~~L~~~~  481 (491)
                      +++....
T Consensus        81 ~~~~~~~   87 (250)
T cd05085          81 SFLRKKK   87 (250)
T ss_pred             HHHHhcC
Confidence            9997653

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.09  E-value=1.4e-10  Score=111.13  Aligned_cols=101  Identities=23%  Similarity=0.454  Sum_probs=85.2

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +..+|...+.||+|+||.||++...++..+++|.+..... .....+.+|+.+++.++|+||+++++.+...+..++|||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL-LKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccch-hhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            3456777789999999999999987889999999876543 345679999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCCCCcccccc
Q 011189          467 FVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      |+++|+|.+++++... ..++|+
T Consensus        83 ~~~~~~L~~~~~~~~~-~~~~~~  104 (261)
T cd05148          83 LMEKGSLLAFLRSPEG-QVLPVA  104 (261)
T ss_pred             ecccCCHHHHHhcCCC-CCCCHH
Confidence            9999999999987543 234443

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.09  E-value=1.9e-10  Score=116.79  Aligned_cols=93  Identities=29%  Similarity=0.495  Sum_probs=79.5

Q ss_pred             hccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      .++|...+.||+|+||.||++..      .++..||+|.++........+.+.+|+.+++.+ +|+|||++++.+...+.
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            45677789999999999999873      123579999997654434567799999999999 89999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++||||+++|+|.++|+.+
T Consensus       117 ~~lv~ey~~~g~L~~~l~~~  136 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRKK  136 (374)
T ss_pred             eEEeHhhccCCcHHHHHHhh
Confidence            99999999999999999764

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=3.3e-10  Score=115.13  Aligned_cols=91  Identities=18%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||+||++.. .+++.+|+|.+....  .....+.+.+|+.++.+++||||+++++.+...+..+||||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence            577788999999999999985 467899999986532  22345678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|...
T Consensus        82 ~~~gg~L~~~l~~~   95 (377)
T cd05629          82 FLPGGDLMTMLIKY   95 (377)
T ss_pred             CCCCCcHHHHHHhc
Confidence            99999999999764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.08  E-value=2.7e-10  Score=115.12  Aligned_cols=92  Identities=18%  Similarity=0.316  Sum_probs=79.3

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|+||+||+++.. .++.||+|.+....  .......+.+|+.++..++|+||+++++.+...+..+||||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIME   81 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEEC
Confidence            5777899999999999999864 57899999987542  12344668899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+.+.
T Consensus        82 ~~~~g~L~~~l~~~~   96 (364)
T cd05599          82 YLPGGDMMTLLMKKD   96 (364)
T ss_pred             CCCCcHHHHHHHHcC
Confidence            999999999998653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.08  E-value=5.3e-10  Score=110.25  Aligned_cols=91  Identities=18%  Similarity=0.212  Sum_probs=79.2

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||+|+||.||++... .+..+|+|.+..........++.+|++++.+++||||+++++.+...+..++|+||+
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence            5777889999999999999864 567889998865544344567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.++|+..
T Consensus        82 ~~~~L~~~l~~~   93 (308)
T cd06615          82 DGGSLDQVLKKA   93 (308)
T ss_pred             CCCcHHHHHHhc
Confidence            999999999865

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.08  E-value=4.1e-10  Score=114.67  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=78.6

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .|...+.||+|+||+||++.. ..++.+|+|.+....  .....+.+.+|+.++++++|+||+++++.+...+..+||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            467778999999999999985 457899999987542  12345678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|++.
T Consensus        82 ~~~gg~L~~~l~~~   95 (382)
T cd05625          82 YIPGGDMMSLLIRM   95 (382)
T ss_pred             CCCCCcHHHHHHhc
Confidence            99999999999765

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PHA02988 hypothetical protein; Provisional

Probab=99.07  E-value=5.9e-10  Score=108.62  Aligned_cols=86  Identities=20%  Similarity=0.386  Sum_probs=73.4

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCccEEEEecc
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVPLLVYEFV  468 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~Ey~  468 (491)
                      ..|++|+++.||+|.+ +++.||||.++....  ....+.|.+|+.+|.+++|||||+++|++.+    ....++||||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            5799999999999998 788999999875432  1225778899999999999999999999876    34678999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.++|+.++
T Consensus       105 ~~g~L~~~l~~~~  117 (283)
T PHA02988        105 TRGYLREVLDKEK  117 (283)
T ss_pred             CCCcHHHHHhhCC
Confidence            9999999998653

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.07  E-value=8.7e-11  Score=117.71  Aligned_cols=92  Identities=24%  Similarity=0.426  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|.||.||||+.+ +.+.||+|.+.+.. ...+.+.+.+|++|+++++|||||.++..+....+.++|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            35666788999999999999854 56889999986653 33456789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+.+ +|+.+|....
T Consensus        82 ~a~g-~L~~il~~d~   95 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDG   95 (808)
T ss_pred             hhhh-hHHHHHHhcc
Confidence            9975 9999998764

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.07  E-value=2.6e-10  Score=111.56  Aligned_cols=92  Identities=16%  Similarity=0.339  Sum_probs=78.7

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||.||++... +++.+|+|.+....  .....+.+.+|+.++++++||||+++++.....+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            5777889999999999999864 57899999986432  21345678899999999999999999999998899999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++++..+
T Consensus        82 ~~~~~~L~~~~~~~~   96 (291)
T cd05612          82 YVPGGELFSYLRNSG   96 (291)
T ss_pred             CCCCCCHHHHHHHcC
Confidence            999999999998653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.06  E-value=4e-10  Score=107.95  Aligned_cols=90  Identities=28%  Similarity=0.490  Sum_probs=78.2

Q ss_pred             cccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +|...+.||+|+||+||++...++..+|+|.++....  ..++|.+|+.++.+++||||+++++++...+..+++|||++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS   82 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc--cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence            4566788999999999999987777899999875432  34679999999999999999999999998889999999999


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                      +|+|.++|+...
T Consensus        83 ~~~l~~~i~~~~   94 (256)
T cd05113          83 NGCLLNYLREHG   94 (256)
T ss_pred             CCcHHHHHHhcC
Confidence            999999998653

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.06  E-value=8e-10  Score=107.42  Aligned_cols=92  Identities=27%  Similarity=0.503  Sum_probs=78.5

Q ss_pred             ccccccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|+..+.||+|+||+||+|..     ..+..+++|.+...........|.+|++++++++||||+++++.....+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            3566678899999999999984     24578999998765443455789999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|..+
T Consensus        85 v~e~~~~~~L~~~l~~~  101 (283)
T cd05090          85 LFEYLNQGDLHEFLIMR  101 (283)
T ss_pred             EEEcCCCCcHHHHHHhc
Confidence            99999999999999643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.06  E-value=3.4e-10  Score=108.64  Aligned_cols=92  Identities=24%  Similarity=0.455  Sum_probs=80.6

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|+..+.||+|++|.||++...+++.||+|.++....  ..++|.+|+.++++++|+||+++++.+...+..++++||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM--DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTEL   82 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc--cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeec
Confidence            456777889999999999999987788899999875432  346799999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.+++....
T Consensus        83 ~~~~~L~~~~~~~~   96 (261)
T cd05068          83 MKYGSLLEYLQGGA   96 (261)
T ss_pred             ccCCcHHHHHhccC
Confidence            99999999998654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.06  E-value=3.9e-10  Score=109.28  Aligned_cols=85  Identities=24%  Similarity=0.455  Sum_probs=71.5

Q ss_pred             eeccCCcceEEEEEEcC-------------------------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCcccc
Q 011189          396 FLGEGGFGSVYRGVLSD-------------------------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK  450 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~~-------------------------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~  450 (491)
                      .||+|+||.||+|.+..                         ...|++|.+..... ....+|.+|+.++++++||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~l~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHR-DIALAFFETASLMSQVSHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHH-HHHHHHHHHHHHHhcCCCCCeee
Confidence            59999999999997421                         13588888865433 34567999999999999999999


Q ss_pred             EEeEEEeCCccEEEEeccCCCChhhhhccCC
Q 011189          451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       451 l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +++++......+|||||+++|+|..+++..+
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~  111 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKEK  111 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhcC
Confidence            9999999999999999999999999997644

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.06  E-value=5e-10  Score=106.77  Aligned_cols=87  Identities=32%  Similarity=0.606  Sum_probs=75.6

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      +.||+|+||.||++... +++.+|+|.+...........|.+|++++++++|+||+++++++...+..+||+||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            36999999999999864 68899999876544334557799999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 011189          474 FHHIHSKS  481 (491)
Q Consensus       474 ~~~L~~~~  481 (491)
                      .++++...
T Consensus        81 ~~~~~~~~   88 (252)
T cd05084          81 LTFLRTEG   88 (252)
T ss_pred             HHHHHhCC
Confidence            99997643

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.06  E-value=6.2e-10  Score=111.06  Aligned_cols=91  Identities=21%  Similarity=0.333  Sum_probs=78.9

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||.||++... .++.||+|.++...  .....+.+.+|+.++..++||||+++++.+...+..+||||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5777889999999999999975 57899999987542  11345678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus        82 ~~~g~~L~~~l~~~   95 (333)
T cd05600          82 YVPGGDFRTLLNNL   95 (333)
T ss_pred             CCCCCCHHHHHHHc
Confidence            99999999999764

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.06  E-value=5.1e-10  Score=107.81  Aligned_cols=96  Identities=26%  Similarity=0.362  Sum_probs=82.1

Q ss_pred             HHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          384 LIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       384 l~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++.+++.+.....||+|+||.||++... ++..+++|.+..... ...+.+.+|+.++++++|+||+++++++...+..+
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDS-RYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCH-HHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            3445666666788999999999999854 567899998876543 34578999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+++++|.++|+..
T Consensus        82 lv~e~~~~~~L~~~l~~~   99 (268)
T cd06624          82 IFMEQVPGGSLSALLRSK   99 (268)
T ss_pred             EEEecCCCCCHHHHHHHh
Confidence            999999999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.06  E-value=5.8e-10  Score=108.77  Aligned_cols=94  Identities=30%  Similarity=0.481  Sum_probs=79.8

Q ss_pred             hhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ..++|...+.||+|+||.||+|..+      .+..||+|.+..........++.+|+.+++.++|+||+++++.+...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            3567888899999999999999753      2457999988755443445678999999999999999999999998899


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++||||+++|+|.++|+..
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~  103 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSL  103 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHh
Confidence            99999999999999999853

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.06  E-value=5.5e-10  Score=111.81  Aligned_cols=94  Identities=26%  Similarity=0.383  Sum_probs=79.1

Q ss_pred             hccccccceeccCCcceEEEEEEcC--CcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD--DTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~--~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|+||.||++..+.  +..||+|.+....  .....+.+.+|+.++..++||||+++++++...+..++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            3467778899999999999998543  3589999886432  22345678999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++|+.+.
T Consensus       109 v~Ey~~~g~L~~~i~~~~  126 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNK  126 (340)
T ss_pred             EEeCCCCCcHHHHHHHcC
Confidence            999999999999998653

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.06  E-value=7.8e-10  Score=106.54  Aligned_cols=93  Identities=26%  Similarity=0.472  Sum_probs=78.9

Q ss_pred             ccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .+|...+.||+|+||.||++...    ....+|+|.++........+.|.+|+.++.+++||||+++++.+...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            35667789999999999999853    23479999987654334567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++++...
T Consensus        84 ~e~~~~~~L~~~~~~~~  100 (267)
T cd05066          84 TEYMENGSLDAFLRKHD  100 (267)
T ss_pred             EEcCCCCCHHHHHHhcC
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.06  E-value=7.9e-11  Score=109.79  Aligned_cols=89  Identities=25%  Similarity=0.444  Sum_probs=73.3

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .|+...++|+|+||.|+|.+.+ .|+.||||++....+ +...+-.+||+++|++++|+|+|.|+.++.....++||+||
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            3555677999999999999965 589999999876543 34456689999999999999999999999999999999999


Q ss_pred             cCCCChhhhhcc
Q 011189          468 VSNGTLFHHIHS  479 (491)
Q Consensus       468 ~~~GsL~~~L~~  479 (491)
                      +++. +.+-|..
T Consensus        83 ~dhT-vL~eLe~   93 (396)
T KOG0593|consen   83 CDHT-VLHELER   93 (396)
T ss_pred             cchH-HHHHHHh
Confidence            9864 4444443

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.05  E-value=5e-10  Score=111.58  Aligned_cols=93  Identities=24%  Similarity=0.413  Sum_probs=79.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... +++.+|+|.+....  .....+.+.+|+.++.+++||||+++++.+...+..++||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            46777889999999999999865 57899999986542  2134567899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++|++..
T Consensus        98 e~~~~~~L~~~l~~~~  113 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG  113 (329)
T ss_pred             cCCCCChHHHHHHHcC
Confidence            9999999999998653

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.05  E-value=5.6e-10  Score=108.15  Aligned_cols=93  Identities=30%  Similarity=0.572  Sum_probs=80.0

Q ss_pred             ccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      .+|...+.||+|+||.||++...+      ++.+|+|.++........+.|.+|+.++..++|+||+++++.+...+..+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            346667889999999999998532      47899999876654345678999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +||||+++|+|.++|+..+
T Consensus        85 lv~e~~~~~~L~~~i~~~~  103 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHG  103 (280)
T ss_pred             EEEecCCCCCHHHHHHhcC
Confidence            9999999999999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.05  E-value=5.8e-10  Score=113.23  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=78.7

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||.||+++.. .++.+|+|.+....  .....+.+.+|++++.+++|+||+++++.+...+..+||||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            5777889999999999999853 57899999986532  11234678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|...+
T Consensus        82 ~~~~g~L~~~i~~~~   96 (376)
T cd05598          82 YIPGGDMMSLLIRLG   96 (376)
T ss_pred             CCCCCcHHHHHHhcC
Confidence            999999999997653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.04  E-value=7.6e-10  Score=107.22  Aligned_cols=94  Identities=33%  Similarity=0.547  Sum_probs=80.1

Q ss_pred             hhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ..++|+..+.||+|+||.||++...      .+..+|+|.+..........+|.+|+.+++.++|+||+++++.+.....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567888899999999999998753      2467999998654433455679999999999999999999999998899


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++|+||+++|+|.+++++.
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~  103 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSL  103 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHc
Confidence            99999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.04  E-value=7.9e-11  Score=117.97  Aligned_cols=90  Identities=27%  Similarity=0.590  Sum_probs=76.2

Q ss_pred             ccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +...+.||.|+-|.||.|++ .++.||||+++....        -++..|++|+|+||+.|.|+|....-.+|||||++.
T Consensus       126 IsELeWlGSGaQGAVF~Grl-~netVAVKKV~elkE--------TdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~  196 (904)
T KOG4721|consen  126 ISELEWLGSGAQGAVFLGRL-HNETVAVKKVRELKE--------TDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQ  196 (904)
T ss_pred             hhhhhhhccCcccceeeeec-cCceehhHHHhhhhh--------hhHHHHHhccCcceeeEeeeecCCceeEEeeecccc
Confidence            34457899999999999999 678899999875432        467789999999999999999999999999999999


Q ss_pred             CChhhhhccCCC---Ccccccc
Q 011189          471 GTLFHHIHSKSS---QVLKTWK  489 (491)
Q Consensus       471 GsL~~~L~~~~~---~~~l~W~  489 (491)
                      |.|.+.|+..+.   +...+|.
T Consensus       197 GqL~~VLka~~~itp~llv~Ws  218 (904)
T KOG4721|consen  197 GQLYEVLKAGRPITPSLLVDWS  218 (904)
T ss_pred             ccHHHHHhccCccCHHHHHHHH
Confidence            999999998753   3346664

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.04  E-value=3.6e-10  Score=110.01  Aligned_cols=91  Identities=18%  Similarity=0.267  Sum_probs=79.1

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||+|+||.||++... .+..+|+|.++..........+.+|+.++.+++|+||+++++.+...+..++|+||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            4566788999999999999875 688999998875433344578999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.++++..
T Consensus        82 ~~~~l~~~~~~~   93 (286)
T cd06622          82 DAGSLDKLYAGG   93 (286)
T ss_pred             CCCCHHHHHHhc
Confidence            999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.04  E-value=7.3e-10  Score=106.18  Aligned_cols=92  Identities=27%  Similarity=0.507  Sum_probs=81.0

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|...+.||+|+||.||++..++++.+++|.+.....  ..+++.+|+.++++++|+||+++++.+......++|+||
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   82 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM--SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY   82 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc--CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence            456777889999999999999987788999999875433  346799999999999999999999999888899999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.++++...
T Consensus        83 ~~~~~L~~~i~~~~   96 (261)
T cd05034          83 MSKGSLLDFLKSGE   96 (261)
T ss_pred             cCCCCHHHHHhccc
Confidence            99999999998753

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.03  E-value=7.6e-10  Score=111.86  Aligned_cols=91  Identities=21%  Similarity=0.292  Sum_probs=78.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|+||+||++... .++.+|+|.++...  .......+.+|+.++.+++|+||+++++.+......+||||
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E   81 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIME   81 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEc
Confidence            5777889999999999999854 57899999987542  11334678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|..+
T Consensus        82 ~~~gg~L~~~l~~~   95 (363)
T cd05628          82 FLPGGDMMTLLMKK   95 (363)
T ss_pred             CCCCCcHHHHHHhc
Confidence            99999999999865

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.03  E-value=8.8e-10  Score=106.11  Aligned_cols=93  Identities=28%  Similarity=0.537  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEcC-C---cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-D---TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|+..+.||+|+||.||++.... +   ..+++|.++........+.|.+|++++++++|+|++++.+.+...+..++|
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEE
Confidence            456777899999999999998642 3   379999987654334567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++++|.++++.+.
T Consensus        85 ~e~~~~~~L~~~~~~~~  101 (268)
T cd05063          85 TEYMENGALDKYLRDHD  101 (268)
T ss_pred             EEcCCCCCHHHHHHhcC
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.03  E-value=1.5e-10  Score=118.63  Aligned_cols=86  Identities=26%  Similarity=0.536  Sum_probs=75.8

Q ss_pred             ccceeccCCcceEEEEEEcC--C--cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          393 KSNFLGEGGFGSVYRGVLSD--D--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~~~--~--~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ..++||+|.||.|++|.|..  |  ..||||.++.........+|++|+.+|.+|+|+|+++|+|+.+. ....||+|..
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELa  192 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELA  192 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhc
Confidence            34789999999999999742  3  46999999887654467899999999999999999999999998 6778999999


Q ss_pred             CCCChhhhhcc
Q 011189          469 SNGTLFHHIHS  479 (491)
Q Consensus       469 ~~GsL~~~L~~  479 (491)
                      +.|+|.+.|+.
T Consensus       193 plGSLldrLrk  203 (1039)
T KOG0199|consen  193 PLGSLLDRLRK  203 (1039)
T ss_pred             ccchHHHHHhh
Confidence            99999999997

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.03  E-value=6e-10  Score=108.56  Aligned_cols=90  Identities=24%  Similarity=0.316  Sum_probs=76.3

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |+..+.||+|+||+||++.. .+++.||+|.+....  .......+.+|+.++++++|+||+++++.+..++..++||||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            56678899999999999985 367899999986542  112235678999999999999999999999998999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.+++...
T Consensus        82 ~~~~~L~~~~~~~   94 (285)
T cd05605          82 MNGGDLKFHIYNM   94 (285)
T ss_pred             cCCCcHHHHHHhc
Confidence            9999999988754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.03  E-value=1e-09  Score=105.74  Aligned_cols=92  Identities=26%  Similarity=0.466  Sum_probs=78.7

Q ss_pred             cccccceeccCCcceEEEEEEcC-C---cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD-D---TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .|+..+.||+|+||.||+|.... +   ..||+|.+.........++|.+|+.++++++||||+++++.+...+..++|+
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            45667889999999999998643 2   3699999876544345678999999999999999999999999889999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++++...
T Consensus        85 e~~~~~~L~~~l~~~~  100 (269)
T cd05065          85 EFMENGALDSFLRQND  100 (269)
T ss_pred             ecCCCCcHHHHHhhCC
Confidence            9999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.03  E-value=5.8e-10  Score=111.79  Aligned_cols=93  Identities=30%  Similarity=0.428  Sum_probs=77.4

Q ss_pred             hccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC-C
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT-K  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-~  459 (491)
                      .++|...+.||+|+||.||++..      ..++.||||.++..........+.+|+.++.++ +|+||+++++.+... .
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            35678889999999999999973      346789999997654334457789999999999 689999999988654 4


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++++||+++|+|.++|+..
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~  106 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSK  106 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhc
Confidence            678999999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.02  E-value=1.2e-09  Score=105.38  Aligned_cols=86  Identities=30%  Similarity=0.445  Sum_probs=73.3

Q ss_pred             eeccCCcceEEEEEEcC---CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          396 FLGEGGFGSVYRGVLSD---DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~~---~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .||+|+||.||+|....   ...+++|.+...........|.+|+.+++.++|+||+++++.+......+|||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997533   347888887655443455779999999999999999999999999999999999999999


Q ss_pred             hhhhhccCC
Q 011189          473 LFHHIHSKS  481 (491)
Q Consensus       473 L~~~L~~~~  481 (491)
                      |.++|+...
T Consensus        82 L~~~l~~~~   90 (269)
T cd05042          82 LKNYLRSNR   90 (269)
T ss_pred             HHHHHHhcc
Confidence            999998754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.02  E-value=7.2e-10  Score=107.85  Aligned_cols=92  Identities=22%  Similarity=0.239  Sum_probs=79.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||+||++... +++.+|+|.+.........+.+.+|+++++.++|+||+++++.+...+..+||+||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            35666688999999999999854 57889999876554434567899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++..
T Consensus        85 ~~~~~L~~~~~~~   97 (284)
T cd06620          85 MDCGSLDRIYKKG   97 (284)
T ss_pred             CCCCCHHHHHHhc
Confidence            9999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.02  E-value=7.4e-10  Score=112.53  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=81.7

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ...|.....||+|.|++|..+.. ..+..||+|.+.+.. .....+.+.+|+.+|..++|||||+|+.+......+++||
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~  134 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVM  134 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEE
Confidence            34567778899999999999985 368899999987653 3234566999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||..+|.|++||+.++
T Consensus       135 eya~~ge~~~yl~~~g  150 (596)
T KOG0586|consen  135 EYASGGELFDYLVKHG  150 (596)
T ss_pred             EeccCchhHHHHHhcc
Confidence            9999999999999764

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=7.5e-10  Score=108.37  Aligned_cols=93  Identities=22%  Similarity=0.308  Sum_probs=83.1

Q ss_pred             hccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .+.|+..++||.|.-++||++. ...+..||||++.........+++.+|+..|+.++||||++++..+..++.+|+||.
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            3567788899999999999998 456799999999876554557889999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      ||.+|++.+.|+..
T Consensus       105 fMa~GS~ldIik~~  118 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTY  118 (516)
T ss_pred             hhcCCcHHHHHHHH
Confidence            99999999999864

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.02  E-value=9.1e-10  Score=105.57  Aligned_cols=91  Identities=23%  Similarity=0.470  Sum_probs=78.2

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|+..++||+|+||.||++..++++.+|+|.+.....  ..+.|.+|+.++++++|+|++++++.. ..+..++++||
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~e~   81 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM--SPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIITEY   81 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC--cHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEEEc
Confidence            356777889999999999999988889999999876543  346799999999999999999999876 45678999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++++...
T Consensus        82 ~~~~~L~~~~~~~~   95 (260)
T cd05067          82 MENGSLVDFLKTPE   95 (260)
T ss_pred             CCCCCHHHHHHhcC
Confidence            99999999997653

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.01  E-value=1.3e-09  Score=105.56  Aligned_cols=94  Identities=28%  Similarity=0.486  Sum_probs=80.5

Q ss_pred             hccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .++|...+.||+|++|.||++....      +..|++|.+...........|.+|+.++++++|+||+++++.+.+.+..
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCc
Confidence            4567778899999999999998743      4678999887554434456799999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||||+++|+|.++|+..+
T Consensus        85 ~lv~e~~~g~~L~~~i~~~~  104 (277)
T cd05036          85 FILLELMAGGDLKSFLRENR  104 (277)
T ss_pred             EEEEecCCCCCHHHHHHHhC
Confidence            99999999999999998653

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.01  E-value=9.7e-10  Score=107.10  Aligned_cols=90  Identities=24%  Similarity=0.312  Sum_probs=76.3

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |+..+.||+|+||+||++.. .+++.+|+|.+....  .......+.+|+.++.+++|+||+++.+.+...+..++|+||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            56678899999999999985 468999999886532  112335688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.+++...
T Consensus        82 ~~~g~L~~~~~~~   94 (285)
T cd05631          82 MNGGDLKFHIYNM   94 (285)
T ss_pred             cCCCcHHHHHHhh
Confidence            9999999888654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.01  E-value=1e-09  Score=104.99  Aligned_cols=90  Identities=26%  Similarity=0.494  Sum_probs=77.8

Q ss_pred             cccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +|...+.||+|+||.||++..+.+..+|+|.+.....  ....|.+|+.++++++|+||+++++.+...+..++|+||++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM--SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC--CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence            4566788999999999999987777899998865432  33578899999999999999999999998899999999999


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                      +++|.++++.+.
T Consensus        83 ~~~L~~~l~~~~   94 (256)
T cd05059          83 NGCLLNYLRERK   94 (256)
T ss_pred             CCCHHHHHHhcc
Confidence            999999998653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.01  E-value=1.2e-09  Score=105.56  Aligned_cols=93  Identities=28%  Similarity=0.548  Sum_probs=79.6

Q ss_pred             ccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|+..+.||+|+||.||++..+      ..+.+++|.+.........++|.+|+.++++++|+||+++++.+...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            46777788999999999999853      246799998876544335678999999999999999999999998888999


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|+||+++|+|.++|+...
T Consensus        85 lv~e~~~~~~L~~~i~~~~  103 (275)
T cd05046          85 MILEYTDLGDLKQFLRATK  103 (275)
T ss_pred             EEEEecCCCcHHHHHHhcc
Confidence            9999999999999998654

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.01  E-value=9.5e-10  Score=108.19  Aligned_cols=94  Identities=29%  Similarity=0.454  Sum_probs=79.9

Q ss_pred             hccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      .++|...+.||+|+||.||++...      .+..+|+|.++........+.+.+|+.+++++ +|+||+++++.+...+.
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            356778889999999999998731      24579999987654434567899999999999 79999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++++||+++|+|.+++++..
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~  134 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKR  134 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCC
Confidence            999999999999999998653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.01  E-value=1.2e-09  Score=105.90  Aligned_cols=93  Identities=25%  Similarity=0.482  Sum_probs=79.9

Q ss_pred             hccccccceeccCCcceEEEEEEcC-----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD-----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~  461 (491)
                      .++|...++||+|+||.||+|....     +..|++|.+.........+.+.+|+.++.+++|+||+++++++.. ....
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            4567778899999999999999755     678999998765444556789999999999999999999998876 4678


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||+++|+|.++|...
T Consensus        85 ~~~~~~~~~~~L~~~l~~~  103 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQC  103 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhc
Confidence            9999999999999999764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.01  E-value=1.5e-09  Score=104.36  Aligned_cols=91  Identities=24%  Similarity=0.337  Sum_probs=78.6

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||.||++.. .+++.+|+|.+..... .....+.+|+.++.+++||||+++++.+...+..++|+||
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~   87 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG-DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEY   87 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc-chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeC
Confidence            4677788999999999999985 4678899999865433 2345688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++.+
T Consensus        88 ~~~~~L~~~~~~~  100 (267)
T cd06646          88 CGGGSLQDIYHVT  100 (267)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.00  E-value=1.8e-09  Score=103.75  Aligned_cols=90  Identities=27%  Similarity=0.540  Sum_probs=77.8

Q ss_pred             ccccceeccCCcceEEEEEEcCCcEEEEEeccccc-----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      |+..+.||+|+||+||++...+++.+|+|.++...     .....+.+.+|++++++++|+||+++++.+...+..++++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            56678899999999999998788999999876432     1123456899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++++|.++|++.
T Consensus        82 e~~~~~~L~~~l~~~   96 (265)
T cd06631          82 EFVPGGSISSILNRF   96 (265)
T ss_pred             ecCCCCcHHHHHHhc
Confidence            999999999999764

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.00  E-value=1.8e-09  Score=105.00  Aligned_cols=92  Identities=28%  Similarity=0.466  Sum_probs=76.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--Ccc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  461 (491)
                      .+|+..+.||+|+||.||++.++     .+..+|+|.+..... ...+.|.+|+.++++++||||+++++++...  ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTA-EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCH-HHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            35666788999999999999753     467899999876543 4457899999999999999999999987543  467


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++|+||+++|+|.+++++.+
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~  102 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHR  102 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcC
Confidence            89999999999999997653

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.00  E-value=1.4e-09  Score=106.03  Aligned_cols=93  Identities=30%  Similarity=0.543  Sum_probs=80.2

Q ss_pred             hccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .++|+..+.||+|+||.||++...      .+..+|+|.+.........++|.+|+.++++++||||+++++.+...+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            456777889999999999999853      45789999987654434557799999999999999999999999988899


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||+++|+|.++|+..
T Consensus        84 ~lv~e~~~~~~L~~~l~~~  102 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHR  102 (288)
T ss_pred             EEEEecCCCCCHHHHHHHc
Confidence            9999999999999999854

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.00  E-value=9.1e-10  Score=110.85  Aligned_cols=88  Identities=24%  Similarity=0.327  Sum_probs=74.8

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||+|+||+||++... +++.||+|.+.........+.+.+|+++++.++|+||+++++.+...+..++|+||+
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  154 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFM  154 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecC
Confidence            3444578999999999999864 678999999866544345678999999999999999999999999999999999999


Q ss_pred             CCCChhhhh
Q 011189          469 SNGTLFHHI  477 (491)
Q Consensus       469 ~~GsL~~~L  477 (491)
                      ++|+|.+..
T Consensus       155 ~~~~L~~~~  163 (353)
T PLN00034        155 DGGSLEGTH  163 (353)
T ss_pred             CCCcccccc
Confidence            999987543

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.00  E-value=1.3e-09  Score=107.79  Aligned_cols=92  Identities=26%  Similarity=0.582  Sum_probs=76.8

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .+|+..+.||+|+||.||+|.+. ++.    .||+|.++........++|.+|+.+++.++||||++++|.+... ...+
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            45778899999999999999853 333    48999987654434567899999999999999999999998764 5679


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||+++|+|.++++.+.
T Consensus        86 v~e~~~~g~l~~~l~~~~  103 (316)
T cd05108          86 ITQLMPFGCLLDYVREHK  103 (316)
T ss_pred             eeecCCCCCHHHHHHhcc
Confidence            999999999999998754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.00  E-value=1.2e-09  Score=106.99  Aligned_cols=92  Identities=25%  Similarity=0.456  Sum_probs=77.8

Q ss_pred             ccccccceeccCCcceEEEEEEcC---------------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD---------------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG  453 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~---------------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  453 (491)
                      .+|...+.||+|+||.||++....               ...||+|.++........+.|.+|++++++++|+|++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            467777899999999999986532               23589999876544345577999999999999999999999


Q ss_pred             EEEeCCccEEEEeccCCCChhhhhccC
Q 011189          454 LCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       454 ~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .+...+..++||||+++++|.++|+..
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~  111 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQR  111 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999999999754

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.99  E-value=9.6e-10  Score=106.60  Aligned_cols=91  Identities=30%  Similarity=0.470  Sum_probs=77.1

Q ss_pred             cccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC--ccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK--VPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~E  466 (491)
                      ++...+.||+|+||.||++...+ +...|||.+...+... .+.+.+|+.+|++++|||||+.+|.....+  ...|.||
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT-SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh-HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            45556889999999999999654 8899999987654322 677899999999999999999999865554  5889999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.+++.+.+
T Consensus        97 y~~~GsL~~~~~~~g  111 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYG  111 (313)
T ss_pred             ccCCCcHHHHHHHcC
Confidence            999999999999875

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.99  E-value=1.3e-09  Score=104.74  Aligned_cols=89  Identities=24%  Similarity=0.474  Sum_probs=75.8

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .+|...+.||+|+||.||++...+...||+|.++....  ..+.|.+|+.+++.++|+||+++++.. ..+..++||||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~~~-~~~~~~lv~e~~   82 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYM   82 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc--CHHHHHHHHHHHHhCCCCCcceEEEEE-CCCCcEEEEEcC
Confidence            45777889999999999999887777899999875432  336789999999999999999999876 445678999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++|+|.+++++.
T Consensus        83 ~~~~L~~~~~~~   94 (262)
T cd05071          83 SKGSLLDFLKGE   94 (262)
T ss_pred             CCCcHHHHHhhc
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.99  E-value=9.4e-11  Score=115.42  Aligned_cols=93  Identities=25%  Similarity=0.382  Sum_probs=77.2

Q ss_pred             hccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCC-ccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTK-VPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~-~~~lv  464 (491)
                      -++|...++||.|.||.||+++ ...+..||||+++..-..-+.--=+||+..|++|+ |||||+|..+..+.+ .+++|
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fV   88 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFV   88 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeee
Confidence            3567777899999999999998 45788999999986543222222468999999998 999999999999887 99999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+ -+|++++++++
T Consensus        89 fE~Md-~NLYqLmK~R~  104 (538)
T KOG0661|consen   89 FEFMD-CNLYQLMKDRN  104 (538)
T ss_pred             HHhhh-hhHHHHHhhcC
Confidence            99997 48999999874

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=98.99  E-value=1.1e-09  Score=102.03  Aligned_cols=93  Identities=22%  Similarity=0.379  Sum_probs=81.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..+.||.|+||+|...+.+ .+..+|+|.+....  +....+...+|..+|+.+.||.+++|.+.+.+.+.++|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            45677788999999999999854 57889999987653  3345677899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||.++|.|+.+|+..+
T Consensus       124 eyv~GGElFS~Lrk~~  139 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSG  139 (355)
T ss_pred             eccCCccHHHHHHhcC
Confidence            9999999999999753

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.98  E-value=2.1e-09  Score=104.41  Aligned_cols=92  Identities=34%  Similarity=0.632  Sum_probs=78.7

Q ss_pred             ccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      .+|+..+.||+|+||.||++....      ...+++|.++........++|.+|+.++.+++||||+++++.+...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            356677889999999999998532      25799999876554445677999999999999999999999999888999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +++||+++|+|.++|...
T Consensus        85 ~~~e~~~~~~L~~~l~~~  102 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRN  102 (283)
T ss_pred             EEEecCCCCcHHHHHHhc
Confidence            999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=98.98  E-value=1.9e-09  Score=107.14  Aligned_cols=87  Identities=20%  Similarity=0.226  Sum_probs=74.4

Q ss_pred             ceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          395 NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      +.||+|+||.||++.. .+++.+|+|.++...  .......+.+|+.++.+++||||+++++.+...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999985 468899999987542  2234467889999999999999999999999999999999999999


Q ss_pred             ChhhhhccCC
Q 011189          472 TLFHHIHSKS  481 (491)
Q Consensus       472 sL~~~L~~~~  481 (491)
                      +|.++|..++
T Consensus        81 ~L~~~l~~~~   90 (323)
T cd05571          81 ELFFHLSRER   90 (323)
T ss_pred             cHHHHHHHcC
Confidence            9999997653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.98  E-value=1.6e-09  Score=103.90  Aligned_cols=91  Identities=24%  Similarity=0.451  Sum_probs=78.3

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|...+.||+|+||.||++....+..+++|.+....  ...+.|.+|+.++++++|+||+++.+.... +..++++||
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh--hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            35677788999999999999998777889999887543  245779999999999999999999999877 778999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++++...
T Consensus        82 ~~~~~L~~~~~~~~   95 (260)
T cd05073          82 MAKGSLLDFLKSDE   95 (260)
T ss_pred             CCCCcHHHHHHhCC
Confidence            99999999998653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=98.97  E-value=1.8e-09  Score=103.25  Aligned_cols=90  Identities=30%  Similarity=0.521  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|+..+.||+|+||.||++.. .++.||+|.++....  ..+++.+|+.++++++|+||+++++.+......++|+||+
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST--AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh--HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence            4566778899999999999987 578999999876543  4578999999999999999999999999888999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++++|.++++...
T Consensus        83 ~~~~L~~~~~~~~   95 (256)
T cd05039          83 AKGSLVDYLRSRG   95 (256)
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999998654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=98.97  E-value=1e-09  Score=111.16  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=79.6

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ..++|...+.||+|+||.||++... .++.+|+|.+....  .....+.+.+|+.+++.++||||+++++++...+..+|
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            3567888899999999999999864 57899999986432  11234558899999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.+++++.
T Consensus       121 v~Ey~~gg~L~~~l~~~  137 (370)
T cd05596         121 VMEYMPGGDLVNLMSNY  137 (370)
T ss_pred             EEcCCCCCcHHHHHHhc
Confidence            99999999999999764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.97  E-value=2.3e-09  Score=103.43  Aligned_cols=85  Identities=27%  Similarity=0.437  Sum_probs=71.7

Q ss_pred             eeccCCcceEEEEEEcCC---cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          396 FLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~~~---~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .||+|+||.||++...++   ..+++|.+.........+.|.+|+.+++.++||||+++++.+......++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            599999999999975433   34667776654433456789999999999999999999999999999999999999999


Q ss_pred             hhhhhccC
Q 011189          473 LFHHIHSK  480 (491)
Q Consensus       473 L~~~L~~~  480 (491)
                      |.++|++.
T Consensus        82 L~~~l~~~   89 (268)
T cd05086          82 LKSYLSQE   89 (268)
T ss_pred             HHHHHHhh
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=98.97  E-value=1.4e-09  Score=110.20  Aligned_cols=95  Identities=23%  Similarity=0.286  Sum_probs=80.2

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ...++|+..+.||+|+||.||++... .++.+|+|.+....  .....+.+.+|+.+++.++||||+++++.+...+..+
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY  119 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence            34567888899999999999999865 57889999986432  1123456889999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +||||+++|+|.++++..
T Consensus       120 lv~Ey~~gg~L~~~l~~~  137 (370)
T cd05621         120 MVMEYMPGGDLVNLMSNY  137 (370)
T ss_pred             EEEcCCCCCcHHHHHHhc
Confidence            999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=98.97  E-value=1.8e-09  Score=107.74  Aligned_cols=91  Identities=15%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||+||++... +++.+|+|.+....  .....+.|.+|+.++..++|+||+++++++...+..++|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMD   81 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEe
Confidence            5777889999999999999864 57899999986432  21344668899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|...
T Consensus        82 ~~~g~~L~~~l~~~   95 (331)
T cd05597          82 YYVGGDLLTLLSKF   95 (331)
T ss_pred             cCCCCcHHHHHHHh
Confidence            99999999999753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.97  E-value=2.1e-09  Score=105.35  Aligned_cols=92  Identities=26%  Similarity=0.461  Sum_probs=78.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-----------------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-----------------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI  451 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-----------------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l  451 (491)
                      ++|+..+.||+|+||.||++...                 +...+|+|.+.........++|.+|+.++++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            45777889999999999987532                 2346899998765443456789999999999999999999


Q ss_pred             EeEEEeCCccEEEEeccCCCChhhhhccC
Q 011189          452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       452 ~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++.+...+..++++||+++|+|.++|...
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  113 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRH  113 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhc
Confidence            99999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=98.97  E-value=1.8e-09  Score=106.76  Aligned_cols=84  Identities=24%  Similarity=0.347  Sum_probs=72.7

Q ss_pred             eccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|+||.||++... +++.+|+|.++...  .......+.+|+.++.+++||||+++++.+...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999864 57899999986532  223456788999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 011189          474 FHHIHSK  480 (491)
Q Consensus       474 ~~~L~~~  480 (491)
                      .++|+.+
T Consensus        81 ~~~l~~~   87 (312)
T cd05585          81 FHHLQRE   87 (312)
T ss_pred             HHHHHhc
Confidence            9999765

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.97  E-value=2.3e-09  Score=105.44  Aligned_cols=92  Identities=24%  Similarity=0.529  Sum_probs=76.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc--EEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT--QVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~--~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|+..+.||+|+||.||++..+ ++.  .+++|.++..........|.+|++++.++ +|+||+++++.+...+..++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            45677788999999999999864 343  46788776543334557799999999999 899999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||+++|+|.++|+..
T Consensus        87 ~e~~~~~~L~~~l~~~  102 (303)
T cd05088          87 IEYAPHGNLLDFLRKS  102 (303)
T ss_pred             EEeCCCCcHHHHHHhc
Confidence            9999999999999865

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=98.97  E-value=1.9e-09  Score=108.84  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=78.7

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|+||+||++... .++.+|+|.++...  .......+.+|+.++.+++|+||+++++.+...+..+||||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E   81 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence            5677789999999999999864 57899999986532  11335678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+.++
T Consensus        82 ~~~gg~L~~~l~~~~   96 (360)
T cd05627          82 FLPGGDMMTLLMKKD   96 (360)
T ss_pred             CCCCccHHHHHHhcC
Confidence            999999999998653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=98.97  E-value=1.9e-09  Score=107.07  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=73.8

Q ss_pred             ceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          395 NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      +.||+|+||.||++.. .++..||+|.++...  .......+.+|+.++..++||||+++++.+...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3699999999999985 468899999987542  1134567889999999999999999999999999999999999999


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      +|.+++..+
T Consensus        81 ~L~~~l~~~   89 (323)
T cd05595          81 ELFFHLSRE   89 (323)
T ss_pred             cHHHHHHHc
Confidence            999988765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=98.96  E-value=1.8e-09  Score=105.35  Aligned_cols=92  Identities=21%  Similarity=0.386  Sum_probs=77.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++..+ +++.||+|.++..........+.+|+.++++++||||+++++.....+..++||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            45777889999999999999864 57899999987543323446788999999999999999999999888899999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ |+|.+++....
T Consensus        85 ~~-~~l~~~l~~~~   97 (288)
T cd07871          85 LD-SDLKQYLDNCG   97 (288)
T ss_pred             CC-cCHHHHHHhcC
Confidence            97 59999987643

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=98.96  E-value=2e-09  Score=107.39  Aligned_cols=92  Identities=15%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||+||+++.. .++.+|+|.+....  .....+.+.+|..++..++|+||+++++++...+..+|||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            35777889999999999999864 57889999986532  2123456889999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|+..
T Consensus        81 Ey~~gg~L~~~l~~~   95 (331)
T cd05624          81 DYYVGGDLLTLLSKF   95 (331)
T ss_pred             eCCCCCcHHHHHHHh
Confidence            999999999999863

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.96  E-value=2e-09  Score=102.86  Aligned_cols=90  Identities=24%  Similarity=0.502  Sum_probs=78.2

Q ss_pred             cccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +|+..+.||+|+||.||++...+++.+|+|.+.....  ...+|.+|++++++++|||++++++.+......++|+||++
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM--SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFME   82 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC--CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCC
Confidence            4566688999999999999887788999998875432  34678999999999999999999999998889999999999


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                      +|+|.++++.+.
T Consensus        83 ~~~L~~~~~~~~   94 (256)
T cd05112          83 HGCLSDYLRAQR   94 (256)
T ss_pred             CCcHHHHHHhCc
Confidence            999999998653

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=98.96  E-value=2.5e-09  Score=105.16  Aligned_cols=92  Identities=23%  Similarity=0.398  Sum_probs=78.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||.||++... +++.+|+|.++..........+.+|+.++++++||||+++++++...+..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            357888899999999999999964 6789999998754332334567899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |++ ++|.+++..+
T Consensus        84 ~~~-~~l~~~~~~~   96 (303)
T cd07869          84 YVH-TDLCQYMDKH   96 (303)
T ss_pred             CCC-cCHHHHHHhC
Confidence            996 6898888764

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.96  E-value=2.3e-09  Score=102.82  Aligned_cols=93  Identities=26%  Similarity=0.376  Sum_probs=80.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||+||++... ++..+++|.+.........+.+.+|+++++.++|+|++++++.+...+..++++||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            35777889999999999999853 57889999987554334567899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.++++...
T Consensus        81 ~~~~~l~~~~~~~~   94 (267)
T cd06610          81 LSGGSLLDIMKSSY   94 (267)
T ss_pred             cCCCcHHHHHHHhc
Confidence            99999999998653

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=98.96  E-value=3.2e-09  Score=102.91  Aligned_cols=90  Identities=22%  Similarity=0.419  Sum_probs=77.4

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |+..+.||+|+||.||++.. .++..+|+|.+.........+.|.+|+.++.+++|+||+++++.+...+..++|+||++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG   85 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence            44567899999999999985 36789999987655433455779999999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +++|.++++..
T Consensus        86 ~~~l~~~i~~~   96 (277)
T cd06641          86 GGSALDLLEPG   96 (277)
T ss_pred             CCcHHHHHhcC
Confidence            99999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.96  E-value=4.4e-10  Score=105.51  Aligned_cols=95  Identities=25%  Similarity=0.385  Sum_probs=83.6

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ  457 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  457 (491)
                      +++|+-+.++     +.||+|+|+.|-... +..+..+|||++.+... ..+.+..+|++++.+. .|+||++|+.++.+
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~g-HsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPG-HSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCc-hHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            3567777776     679999999999887 67899999999977643 6678899999999988 59999999999999


Q ss_pred             CCccEEEEeccCCCChhhhhccC
Q 011189          458 TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       458 ~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ....|||||-|.+|.|.++|+.+
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~  170 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKR  170 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHh
Confidence            99999999999999999999865

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.96  E-value=2.1e-09  Score=103.07  Aligned_cols=89  Identities=26%  Similarity=0.474  Sum_probs=76.2

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|+..+.||+|+||.||++...++..+|+|.++....  ..++|.+|+.++++++|+|++++++... .+..+++|||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM--SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC--CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEec
Confidence            45667788999999999999987888899999876433  3467999999999999999999998874 55688999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.++++..
T Consensus        83 ~~~~L~~~~~~~   94 (260)
T cd05070          83 SKGSLLDFLKDG   94 (260)
T ss_pred             CCCcHHHHHHhc
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.96  E-value=1.9e-09  Score=103.53  Aligned_cols=90  Identities=31%  Similarity=0.544  Sum_probs=78.2

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|...+.||+|++|.||++... .++.+++|.+....  ....++.+|++++.+++|+||+++++.+...+..++++||+
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT--MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc--hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence            4666788999999999999864 57889999987543  24577999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++++|.+++....
T Consensus        85 ~~~~L~~~~~~~~   97 (263)
T cd05052          85 TYGNLLDYLRECN   97 (263)
T ss_pred             CCCcHHHHHHhCC
Confidence            9999999997643

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.96  E-value=1.7e-09  Score=105.68  Aligned_cols=95  Identities=27%  Similarity=0.477  Sum_probs=80.1

Q ss_pred             HhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      ...++|+..+.||+|+||.||++...      ....+|+|.+..........++.+|+.++.++ +|+||+++++.+...
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            34456777889999999999999863      23679999987654434557799999999999 899999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +..+++|||+++|+|.++|+..
T Consensus        89 ~~~~li~e~~~~~~L~~~l~~~  110 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFLRAR  110 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhc
Confidence            9999999999999999999764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.95  E-value=3.4e-09  Score=103.39  Aligned_cols=90  Identities=31%  Similarity=0.458  Sum_probs=76.4

Q ss_pred             ccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      |...+.||+|+||.||+|...      ....+++|.+.........+.+.+|+.+++.++||||+++++.+...+..+++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLI   81 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEE
Confidence            556788999999999999852      23578899887654434567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||+++|+|.++|...
T Consensus        82 ~e~~~~~~L~~~l~~~   97 (290)
T cd05045          82 VEYAKYGSLRSFLRES   97 (290)
T ss_pred             EEecCCCCHHHHHHhc
Confidence            9999999999998753

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.95  E-value=3e-09  Score=103.49  Aligned_cols=91  Identities=29%  Similarity=0.408  Sum_probs=76.9

Q ss_pred             cccccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~  462 (491)
                      .|+..+.||+|+||.||.+.+     ..+..+|+|.++........+.|.+|+.++++++|+|++++.+.+...  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            356678899999999999974     246789999987655445567899999999999999999999998775  5688


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +||||+++++|.+++.+.
T Consensus        85 lv~e~~~g~~L~~~l~~~  102 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRN  102 (284)
T ss_pred             EEEEccCCCCHHHHHHhc
Confidence            999999999999999764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=98.94  E-value=2.2e-09  Score=108.89  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=82.7

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      .++....++|...+.||+|+||.||++... .++.+|+|.+....  .....+.+.+|+.++..++||||+++++.+...
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            344455678999999999999999999865 57889999986432  112345688999999999999999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +..++||||+++|+|.++++..
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~  137 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNY  137 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhc
Confidence            9999999999999999999764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=98.94  E-value=2.2e-09  Score=106.98  Aligned_cols=91  Identities=21%  Similarity=0.238  Sum_probs=78.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||+||++... +++.+|+|.++...  .....+.+.+|+.++..++|+||+++++.+...+..+||||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME   81 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence            5777889999999999999854 67899999987542  12345678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus        82 ~~~~~~L~~~l~~~   95 (330)
T cd05601          82 YQPGGDLLSLLNRY   95 (330)
T ss_pred             CCCCCCHHHHHHHh
Confidence            99999999999865

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=98.94  E-value=2.4e-09  Score=103.86  Aligned_cols=92  Identities=22%  Similarity=0.330  Sum_probs=80.3

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||.||++... ++..+|+|.+..... ...+.|.+|+.++++++|+||+++++.+......++|||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESE-EELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCH-HHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            456777788999999999999864 578999999876543 455789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.+++...
T Consensus        83 ~~~~~~L~~~~~~~   96 (280)
T cd06611          83 FCDGGALDSIMLEL   96 (280)
T ss_pred             ccCCCcHHHHHHHh
Confidence            99999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.94  E-value=3.5e-09  Score=102.41  Aligned_cols=92  Identities=30%  Similarity=0.531  Sum_probs=79.4

Q ss_pred             ccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...+.||+|+||.||++....      +..+|+|.+...........|.+|+.++..++|+||+++++.+......+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTL   85 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcE
Confidence            467777899999999999998632      36899999876544345578999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+++|+|.++|+..
T Consensus        86 ~v~e~~~~~~L~~~l~~~  103 (277)
T cd05032          86 VVMELMAKGDLKSYLRSR  103 (277)
T ss_pred             EEEecCCCCCHHHHHHhc
Confidence            999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.94  E-value=3.5e-09  Score=104.33  Aligned_cols=94  Identities=29%  Similarity=0.411  Sum_probs=79.2

Q ss_pred             hccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||.||++...        ....+|+|.++.........++.+|+.++..+ +|+||+++++.+...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            356778899999999999998742        23579999987654334557799999999999 799999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++|+||+++|+|.++|+.++
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~  119 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARR  119 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcC
Confidence            99999999999999999998653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=98.94  E-value=3.6e-09  Score=101.62  Aligned_cols=91  Identities=26%  Similarity=0.425  Sum_probs=79.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEecccc--chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEA--DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..+.||+|+||.||++... +++.+|+|.++..  ......+.+.+|++++++++|+|++++++.+...+..++|+
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            46777889999999999999975 7889999987642  22234578999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||+++|+|.+++.+
T Consensus        82 e~~~~~~L~~~l~~   95 (267)
T cd08224          82 ELADAGDLSRMIKH   95 (267)
T ss_pred             ecCCCCCHHHHHHH
Confidence            99999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.94  E-value=2.2e-09  Score=107.89  Aligned_cols=93  Identities=27%  Similarity=0.406  Sum_probs=80.6

Q ss_pred             hccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchh--hHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKI--RVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~--~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~l  463 (491)
                      ...|...+.||+|.||.||++..+. ++.+|+|.+......  ...+.+.+|+.+|.++. |||||.+.+.+......+|
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            3456777899999999999999654 899999998765431  24478999999999998 9999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      |||++.+|.|++.|...
T Consensus       114 vmEL~~GGeLfd~i~~~  130 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK  130 (382)
T ss_pred             EEEecCCchHHHHHHHc
Confidence            99999999999998764

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.94  E-value=2.8e-09  Score=103.45  Aligned_cols=98  Identities=19%  Similarity=0.338  Sum_probs=80.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||+|++|.||++... ++..+|+|.++........+.+.+|+.++++++|+||+++++.+...+..+||+||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            3667789999999999999964 578999999876543334567889999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCCCCccccc
Q 011189          469 SNGTLFHHIHSKSSQVLKTW  488 (491)
Q Consensus       469 ~~GsL~~~L~~~~~~~~l~W  488 (491)
                      + |+|.+++........++|
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~   99 (284)
T cd07836          81 D-KDLKKYMDTHGVRGALDP   99 (284)
T ss_pred             C-ccHHHHHHhcCCCCCcCH
Confidence            8 589999876543333444

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.94  E-value=2.4e-09  Score=107.58  Aligned_cols=94  Identities=26%  Similarity=0.449  Sum_probs=78.8

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc---h-hhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD---K-IRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKV  460 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~---~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~  460 (491)
                      ....|...+.||+|.||+|+.+.. ..+..||+|.+....   . ....+...+|+.+++.++ ||||++++.+......
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            345778889999999999999974 467999999765531   1 122355668999999998 9999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++||||+.+|+|+++|.+.
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~  114 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNK  114 (370)
T ss_pred             EEEEEEecCCccHHHHHHHc
Confidence            99999999999999999984

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.93  E-value=4.9e-09  Score=100.10  Aligned_cols=90  Identities=20%  Similarity=0.327  Sum_probs=78.0

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |...+.||+|+||.||++... +++.+++|.++........+.+.+|+.++++++|+||+++++.+...+..++++||++
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   81 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCD   81 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCC
Confidence            556788999999999999854 6789999988654433456788899999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +|+|.+++...
T Consensus        82 ~~~l~~~~~~~   92 (255)
T cd08219          82 GGDLMQKIKLQ   92 (255)
T ss_pred             CCcHHHHHHhc
Confidence            99999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=98.93  E-value=4.6e-09  Score=100.25  Aligned_cols=91  Identities=30%  Similarity=0.507  Sum_probs=77.9

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      |+..+.||+|++|+||++... +++.+++|.+....    .....+.+.+|+.++++++|+||+++++.+...+..++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            556688999999999999975 68899999875432    1134577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++++|.+++++..
T Consensus        82 e~~~~~~L~~~~~~~~   97 (258)
T cd06632          82 ELVPGGSLAKLLKKYG   97 (258)
T ss_pred             EecCCCcHHHHHHhcC
Confidence            9999999999998653

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=98.93  E-value=3.6e-09  Score=105.35  Aligned_cols=86  Identities=21%  Similarity=0.247  Sum_probs=74.0

Q ss_pred             ceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          395 NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      +.||+|+||.||++.. .+++.+|+|.+....  .......+.+|+.+++.++||||+++++.+...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999985 468899999987542  2234567899999999999999999999999999999999999999


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      +|.+++...
T Consensus        81 ~L~~~l~~~   89 (328)
T cd05593          81 ELFFHLSRE   89 (328)
T ss_pred             CHHHHHHhc
Confidence            999998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.93  E-value=4.5e-09  Score=101.81  Aligned_cols=91  Identities=22%  Similarity=0.407  Sum_probs=78.4

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .|+..+.||+|+||.||++... .+..+|+|.+.........+.+.+|+.++++++|+||+++++.+......++||||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            3555678999999999999864 578999998875543345678999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++|+|.++++..
T Consensus        85 ~~~~L~~~i~~~   96 (277)
T cd06640          85 GGGSALDLLRAG   96 (277)
T ss_pred             CCCcHHHHHhcC
Confidence            999999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.93  E-value=2.4e-09  Score=102.13  Aligned_cols=90  Identities=21%  Similarity=0.370  Sum_probs=78.3

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|++|.||++... +++.+++|.+.... .....+++.+|++++++++|||++++++.+...+..++|+||+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08529           2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYA   81 (256)
T ss_pred             ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeC
Confidence            556688999999999999864 57899999876432 2245678999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.++|+..
T Consensus        82 ~~~~L~~~l~~~   93 (256)
T cd08529          82 ENGDLHKLLKMQ   93 (256)
T ss_pred             CCCcHHHHHHHh
Confidence            999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=98.93  E-value=5e-09  Score=101.65  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=75.2

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..++||+|+||.||++.. ..++.+|+|.+.........++|.+|+.++.+++||||+++++.+...+..++|+||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            456678899999999999985 4678999999865433344577999999999999999999999999999999999999


Q ss_pred             CCCChhhhh
Q 011189          469 SNGTLFHHI  477 (491)
Q Consensus       469 ~~GsL~~~L  477 (491)
                      ++|+|..+.
T Consensus        82 ~~~~l~~~~   90 (279)
T cd06619          82 DGGSLDVYR   90 (279)
T ss_pred             CCCChHHhh
Confidence            999997653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=98.93  E-value=3.4e-09  Score=116.04  Aligned_cols=91  Identities=24%  Similarity=0.405  Sum_probs=79.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .+|...++||+|+||.||++... .++.||+|+++...  .....++|.+|++++++++||||+++++.+...+..+++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            36777889999999999999864 57899999987532  2234577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||+++|+|.++|++
T Consensus        82 EY~eGGSL~~lL~s   95 (932)
T PRK13184         82 PYIEGYTLKSLLKS   95 (932)
T ss_pred             EcCCCCCHHHHHHH
Confidence            99999999999975

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.93  E-value=3.7e-09  Score=101.69  Aligned_cols=86  Identities=29%  Similarity=0.531  Sum_probs=71.9

Q ss_pred             ceeccCCcceEEEEEEcC-------------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          395 NFLGEGGFGSVYRGVLSD-------------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~-------------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      +.||+|+||.||+|.+..             ...|++|.+..... .....|.+|+.+++.++||||+++++++......
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~-~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHR-DISLAFFETASMMRQVSHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhh-hHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            358999999999998532             22588888765433 4456789999999999999999999999998899


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++|+||+++|+|..+++.+.
T Consensus        80 ~lv~e~~~~~~l~~~~~~~~   99 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRKS   99 (262)
T ss_pred             EEEEecccCCCHHHHHHhcC
Confidence            99999999999999988653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=98.93  E-value=3.6e-09  Score=105.17  Aligned_cols=87  Identities=24%  Similarity=0.416  Sum_probs=73.3

Q ss_pred             ceeccCCcceEEEEEE----cCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          395 NFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.||+|+||.||++..    ..++.+|+|.++...   .......+.+|+.+++.++||||+++++.+...+..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999974    357889999986532   112345678999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++++...
T Consensus        82 ~~~~~L~~~~~~~~   95 (323)
T cd05584          82 LSGGELFMHLEREG   95 (323)
T ss_pred             CCCchHHHHHHHcC
Confidence            99999999997653

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.93  E-value=3.9e-09  Score=102.90  Aligned_cols=91  Identities=29%  Similarity=0.573  Sum_probs=77.6

Q ss_pred             ccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      .+|...+.||+|+||+||++...      ++..+|+|.+..... ...+.|.+|++++.+++|+||+++++.+...+..+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD-NARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   83 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCH-HHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            35667788999999999999742      245689998876543 44577999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+++++|.++|+..
T Consensus        84 lv~e~~~~~~L~~~i~~~  101 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAH  101 (288)
T ss_pred             EEEEcCCCCCHHHHHHHc
Confidence            999999999999999854

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=98.93  E-value=3.6e-09  Score=104.83  Aligned_cols=86  Identities=27%  Similarity=0.402  Sum_probs=73.0

Q ss_pred             ceeccCCcceEEEEEE----cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          395 NFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +.||+|+||.||++..    ..++.+|+|.+.... .......+.+|++++++++||||+++++.+...+..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5699999999999874    357899999987543 21234567889999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +|+|.++|+.+
T Consensus        82 ~~~L~~~l~~~   92 (318)
T cd05582          82 GGDLFTRLSKE   92 (318)
T ss_pred             CCcHHHHHHHc
Confidence            99999999754

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.93  E-value=4e-09  Score=103.67  Aligned_cols=94  Identities=28%  Similarity=0.438  Sum_probs=79.1

Q ss_pred             hccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||.||++...        ++..+|+|.+.........+++.+|+.++..+ +||||+++++.+...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            456777789999999999999741        23479999987544334567899999999999 899999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ...+++|||+++|+|.++|++.+
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~  116 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARR  116 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcC
Confidence            99999999999999999998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=98.93  E-value=5.2e-09  Score=100.60  Aligned_cols=91  Identities=29%  Similarity=0.430  Sum_probs=77.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEecccc--chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA--DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++.. .+++.+|+|.++..  ........|.+|+++++.++||||+++++.+...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4677788999999999999985 46789999987542  22244567999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||+++|+|.+++..
T Consensus        82 e~~~~~~L~~~~~~   95 (267)
T cd08228          82 ELADAGDLSQMIKY   95 (267)
T ss_pred             EecCCCcHHHHHHH
Confidence            99999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.92  E-value=5e-09  Score=102.44  Aligned_cols=93  Identities=25%  Similarity=0.415  Sum_probs=79.6

Q ss_pred             ccccccceeccCCcceEEEEEEcC-----------------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-----------------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI  451 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-----------------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l  451 (491)
                      .+|...+.||+|+||.||++....                 +..+|+|.+.........++|.+|+.++.+++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            467778899999999999987532                 246899998766544556789999999999999999999


Q ss_pred             EeEEEeCCccEEEEeccCCCChhhhhccCC
Q 011189          452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       452 ~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++++...+..++++||+++++|.++|+...
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHV  114 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhcc
Confidence            999999899999999999999999998654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.92  E-value=5.1e-09  Score=100.33  Aligned_cols=85  Identities=32%  Similarity=0.563  Sum_probs=71.1

Q ss_pred             eeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          396 FLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .||+|+||.||+|.+.   .+..||+|.+.........+.|.+|+.++++++|+||+++++.+. .+..++|+||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            3899999999999763   345799999876644345577999999999999999999999874 457889999999999


Q ss_pred             hhhhhccCC
Q 011189          473 LFHHIHSKS  481 (491)
Q Consensus       473 L~~~L~~~~  481 (491)
                      |.++++.+.
T Consensus        81 L~~~l~~~~   89 (257)
T cd05115          81 LNKFLSGKK   89 (257)
T ss_pred             HHHHHHhCC
Confidence            999998643

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=98.92  E-value=2e-09  Score=107.98  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=79.1

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||+||++... +++.||+|.++...  .......+.+|+.++..++|+||+++++.+...+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME   81 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence            5777889999999999999964 68899999987542  11345678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|...
T Consensus        82 ~~~~~~L~~~l~~~   95 (350)
T cd05573          82 YMPGGDLMNLLIRK   95 (350)
T ss_pred             CCCCCCHHHHHHHc
Confidence            99999999999865

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.91  E-value=4.8e-09  Score=102.79  Aligned_cols=92  Identities=23%  Similarity=0.504  Sum_probs=77.0

Q ss_pred             ccccccceeccCCcceEEEEEEcC-C--cEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-D--TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~--~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...++||+|+||.||++...+ +  ..+++|.++........+.|.+|+.++.++ +||||+++++.+......+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            457777899999999999998743 3  347888887543334457799999999999 799999999999998999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||+++|+|.++|+..
T Consensus        82 ~e~~~~~~L~~~l~~~   97 (297)
T cd05089          82 IEYAPYGNLLDFLRKS   97 (297)
T ss_pred             EEecCCCcHHHHHHhc
Confidence            9999999999999764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.91  E-value=5.7e-09  Score=101.21  Aligned_cols=92  Identities=28%  Similarity=0.567  Sum_probs=77.4

Q ss_pred             ccccccceeccCCcceEEEEEEcC-C----cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-D----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .+|+..+.||+|+||.||++.... +    ..+|+|.+..........++.+|+.++.+++|+||+++++.+.. +..++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            356667889999999999998643 3    26899988766544556789999999999999999999999887 78899


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      |+||+++|+|.++|+++.
T Consensus        86 v~e~~~~g~L~~~l~~~~  103 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHK  103 (279)
T ss_pred             EEecCCCCcHHHHHHhcc
Confidence            999999999999998754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=98.91  E-value=9.5e-10  Score=103.99  Aligned_cols=92  Identities=24%  Similarity=0.370  Sum_probs=74.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  464 (491)
                      +.|+..+.|++|.||.||+|+. ++++.||+|+++-... .+-.-.-+||+.+|.+++|||||.+..+....  +..|||
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            4566668899999999999985 4688999999875432 12234568999999999999999998888654  479999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++ ||...|+.-+
T Consensus       156 Me~~Eh-DLksl~d~m~  171 (419)
T KOG0663|consen  156 MEYVEH-DLKSLMETMK  171 (419)
T ss_pred             HHHHHh-hHHHHHHhcc
Confidence            999986 8999988654

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=98.91  E-value=3.5e-09  Score=103.17  Aligned_cols=91  Identities=23%  Similarity=0.306  Sum_probs=76.3

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |+..+.||+|+||+||++... +++.+|+|.+....  .......+.+|+.++++++|+|++++.+.+...+..++++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            455678999999999999864 67899999986542  112345678999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.+++....
T Consensus        82 ~~~~~L~~~~~~~~   95 (285)
T cd05632          82 MNGGDLKFHIYNMG   95 (285)
T ss_pred             ccCccHHHHHHHhc
Confidence            99999999987643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=98.91  E-value=5.6e-09  Score=99.72  Aligned_cols=91  Identities=23%  Similarity=0.363  Sum_probs=78.2

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|+||.||.++. .+++.+++|.+.... ......++.+|+.++++++|+||+++++++.+.+..++++||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            366778999999999988874 467889999876542 224557799999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.+++.+.
T Consensus        81 ~~~~~L~~~~~~~   93 (256)
T cd08221          81 ANGGTLYDKIVRQ   93 (256)
T ss_pred             cCCCcHHHHHHhc
Confidence            9999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.91  E-value=6.5e-09  Score=98.96  Aligned_cols=86  Identities=36%  Similarity=0.678  Sum_probs=76.5

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChh
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLF  474 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~  474 (491)
                      ++||+|+||.||++...+++.|++|.++..........|.+|+.++++++|+||+++++.+...+..++|+||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            36999999999999976699999999876554345678999999999999999999999999999999999999999999


Q ss_pred             hhhccC
Q 011189          475 HHIHSK  480 (491)
Q Consensus       475 ~~L~~~  480 (491)
                      ++|+..
T Consensus        81 ~~l~~~   86 (251)
T cd05041          81 TFLRKK   86 (251)
T ss_pred             HHHHhc
Confidence            999764

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.91  E-value=4.3e-09  Score=104.10  Aligned_cols=93  Identities=28%  Similarity=0.456  Sum_probs=78.5

Q ss_pred             hccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||.||++...        ....+|+|.++.........++.+|+.++.++ +||||+++++++...
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            456777889999999999999741        24579999987654434567799999999999 699999999999988


Q ss_pred             CccEEEEeccCCCChhhhhccC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +..++++||+++|+|.++|+..
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~  112 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRAR  112 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhc
Confidence            8999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.91  E-value=4.6e-09  Score=110.16  Aligned_cols=90  Identities=20%  Similarity=0.253  Sum_probs=76.1

Q ss_pred             cccccceeccCCcceEEEEEEc-C-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-D-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .|...+.||+|++|.||++... + +..|++|.+..... .....+.+|+.+++.++|||||++++.+...+..+|||||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~-~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDE-RQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCH-HHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEEC
Confidence            3777789999999999999743 3 56788887654433 3456788899999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++|++.
T Consensus       147 ~~gg~L~~~l~~~  159 (478)
T PTZ00267        147 GSGGDLNKQIKQR  159 (478)
T ss_pred             CCCCCHHHHHHHH
Confidence            9999999998753

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.91  E-value=2.2e-09  Score=104.01  Aligned_cols=90  Identities=21%  Similarity=0.425  Sum_probs=77.0

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |+..+.||+|+||.||+|... .++.||+|.+.........+.+.+|+.++++++|+||+++++.+......++|+||++
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            444567999999999999854 5778999988755433456789999999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +++|.++++.+
T Consensus        86 ~~~L~~~~~~~   96 (277)
T cd06642          86 GGSALDLLKPG   96 (277)
T ss_pred             CCcHHHHhhcC
Confidence            99999998753

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.91  E-value=4.8e-09  Score=101.71  Aligned_cols=92  Identities=27%  Similarity=0.460  Sum_probs=77.4

Q ss_pred             cccccceeccCCcceEEEEEEc-----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  462 (491)
                      .|...+.||+|+||.||++.+.     .+..+|+|.++........+.|.+|+.+++.++|+||+++++++..  ....+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            4555678999999999999864     3578999998765542346789999999999999999999998877  55789


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +++||+++++|.++++...
T Consensus        85 lv~e~~~~~~l~~~l~~~~  103 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHR  103 (284)
T ss_pred             EEEecCCCCCHHHHHHhCc
Confidence            9999999999999998754

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.91  E-value=5.8e-09  Score=100.02  Aligned_cols=89  Identities=25%  Similarity=0.460  Sum_probs=75.6

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|...+.||+|++|.||++....+..+|+|.+.....  ..+.|.+|+.++++++|+|+++++++.. .+..+++|||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM--MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc--cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            45677788999999999999987777899998865432  3467899999999999999999998874 56788999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++|+|.+++++.
T Consensus        83 ~~~~L~~~~~~~   94 (260)
T cd05069          83 GKGSLLDFLKEG   94 (260)
T ss_pred             CCCCHHHHHhhC
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=98.91  E-value=5.3e-09  Score=102.59  Aligned_cols=91  Identities=21%  Similarity=0.361  Sum_probs=79.6

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .+|...+.||+|++|.||++.. .+++.||+|.+..... ...+.+.+|+.+++.++|+||+++++.+...+..++|+||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc-chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence            5677788999999999999985 4688999999865443 3456789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.+++++.
T Consensus        98 ~~~~~L~~~~~~~  110 (297)
T cd06656          98 LAGGSLTDVVTET  110 (297)
T ss_pred             cCCCCHHHHHHhC
Confidence            9999999998753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.90  E-value=6.9e-09  Score=100.13  Aligned_cols=86  Identities=24%  Similarity=0.551  Sum_probs=72.9

Q ss_pred             ceeccCCcceEEEEEEcC-Cc--EEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLSD-DT--QVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~-~~--~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||.||++...+ +.  .+++|.++........+.+.+|+.++.++ +||||+++++.+...+..+++|||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            358999999999998754 33  47888887543334557899999999999 899999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++|+..
T Consensus        81 ~~L~~~i~~~   90 (270)
T cd05047          81 GNLLDFLRKS   90 (270)
T ss_pred             CcHHHHHHhc
Confidence            9999999864

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=98.90  E-value=5.4e-09  Score=104.13  Aligned_cols=86  Identities=23%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||.||++... +++.+|+|.++...  .....+.+.+|..++..+ +||||+++++++...+..+|||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            36999999999999864 57899999987542  223446688999999998 799999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.+++..+
T Consensus        81 g~L~~~~~~~   90 (329)
T cd05588          81 GDLMFHMQRQ   90 (329)
T ss_pred             CCHHHHHHHc
Confidence            9999998754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.90  E-value=4.1e-09  Score=101.60  Aligned_cols=92  Identities=29%  Similarity=0.482  Sum_probs=75.9

Q ss_pred             ccccccceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||.||+|...+    ...|++|...........+.|.+|+.++++++|+||+++++.+.. +..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            346667899999999999998643    246899988765433456789999999999999999999998754 567899


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus        85 ~e~~~~~~L~~~l~~~~  101 (270)
T cd05056          85 MELAPLGELRSYLQVNK  101 (270)
T ss_pred             EEcCCCCcHHHHHHhCC
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=1.5e-09  Score=111.02  Aligned_cols=93  Identities=23%  Similarity=0.328  Sum_probs=79.6

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .|+..+.||+|+-|.|..|+. ..|+.+|||.+....  .........+|+.+|+-+.||||++|+.++....++|||+|
T Consensus        13 pwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   13 PWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             ceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            456678899999999999984 579999999987652  11223557799999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCCC
Q 011189          467 FVSNGTLFHHIHSKSS  482 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~  482 (491)
                      |+++|.|+++|..++.
T Consensus        93 yv~gGELFdylv~kG~  108 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKGP  108 (786)
T ss_pred             ecCCchhHHHHHhhCC
Confidence            9999999999998753

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.90  E-value=3.7e-09  Score=100.99  Aligned_cols=86  Identities=29%  Similarity=0.524  Sum_probs=73.7

Q ss_pred             ceeccCCcceEEEEEEcC--C--cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLSD--D--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~--~--~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|++|.||++.+..  +  ..+|+|.++........++|.+|+.++++++|+||+++++.... ...++++||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            368999999999998643  2  36899998776543456789999999999999999999999888 888999999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|.++|.+..
T Consensus        80 ~~L~~~l~~~~   90 (257)
T cd05040          80 GSLLDRLRKDA   90 (257)
T ss_pred             CcHHHHHHhcc
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.90  E-value=5.3e-09  Score=101.06  Aligned_cols=91  Identities=20%  Similarity=0.360  Sum_probs=79.0

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||.|++|.||++... +++.+++|.+...........+.+|+.++++++|+|++++++.+......++|+||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            4666788999999999999864 578999999876543345577899999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.++++..
T Consensus        82 ~~~~L~~~~~~~   93 (274)
T cd06609          82 GGGSCLDLLKPG   93 (274)
T ss_pred             CCCcHHHHHhhc
Confidence            999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.90  E-value=2.8e-09  Score=102.49  Aligned_cols=90  Identities=28%  Similarity=0.440  Sum_probs=77.7

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|++|.||++.. .+++.+++|.+....  .....++|.+|+.+++.++|+||+++++.+...+..++++|
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   82 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLE   82 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEE
Confidence            566678899999999999985 578899999876432  22345789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      |+++++|.++++.
T Consensus        83 ~~~~~~L~~~~~~   95 (267)
T cd08229          83 LADAGDLSRMIKH   95 (267)
T ss_pred             ecCCCCHHHHHHH
Confidence            9999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.90  E-value=1e-09  Score=110.56  Aligned_cols=91  Identities=22%  Similarity=0.388  Sum_probs=79.2

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ..|.....||+|+-|.||.+. ...++.||||++..... ...+-.++|+.+|+..+|+|||+++..++..+++|+||||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q-~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQ-PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccC-CchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEee
Confidence            345666789999999999997 55788999999987655 3457789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      |++|+|.+.+...
T Consensus       352 m~ggsLTDvVt~~  364 (550)
T KOG0578|consen  352 MEGGSLTDVVTKT  364 (550)
T ss_pred             cCCCchhhhhhcc
Confidence            9999999987753

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=98.90  E-value=4.6e-09  Score=101.06  Aligned_cols=92  Identities=22%  Similarity=0.349  Sum_probs=78.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++.. .+++.+|+|.++.... .....+.+|+.+++.++||||+++++.....+..++|+||
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~   87 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG-EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF   87 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence            3566667899999999999985 4578999999875543 3446688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.++++..+
T Consensus        88 ~~~~~L~~~~~~~~  101 (267)
T cd06645          88 CGGGSLQDIYHVTG  101 (267)
T ss_pred             cCCCcHHHHHHhcC
Confidence            99999999987543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.90  E-value=5.5e-10  Score=109.12  Aligned_cols=92  Identities=23%  Similarity=0.439  Sum_probs=81.9

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .|...++||+|.||.||||.. ..++.||+|.+.......+.++..+|+.++.+++++||.+++|.+..+..++++|||+
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            455568899999999999984 4678999999987765567788999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      .+|++.+.|+...
T Consensus        94 ~gGsv~~lL~~~~  106 (467)
T KOG0201|consen   94 GGGSVLDLLKSGN  106 (467)
T ss_pred             cCcchhhhhccCC
Confidence            9999999998653

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.89  E-value=4.4e-09  Score=100.47  Aligned_cols=84  Identities=31%  Similarity=0.580  Sum_probs=70.7

Q ss_pred             ceeccCCcceEEEEEEcCCc-----------EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          395 NFLGEGGFGSVYRGVLSDDT-----------QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~-----------~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      +.||+|+||.||++...+..           .+++|.+.....  ....|.+|+.++++++|+||+++++.+.. ...++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~l   77 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR--DSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIM   77 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh--hHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEE
Confidence            36899999999999975432           477787665433  25789999999999999999999999988 77899


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      |+||+++|+|.++++...
T Consensus        78 v~e~~~~~~L~~~l~~~~   95 (259)
T cd05037          78 VEEYVKFGPLDVFLHREK   95 (259)
T ss_pred             EEEcCCCCcHHHHHHhhc
Confidence            999999999999998754

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.1e-09  Score=105.09  Aligned_cols=84  Identities=29%  Similarity=0.584  Sum_probs=68.2

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----ccEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----VPLL  463 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~l  463 (491)
                      .|...+++|.|+||.||+|.+. .++.||||+..+.....     -+|+.+|+.++|||||+|+-++....     ...|
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k-----nrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK-----NRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC-----cHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            4556789999999999999964 46899999987654422     27899999999999999998886532     3348


Q ss_pred             EEeccCCCChhhhhcc
Q 011189          464 VYEFVSNGTLFHHIHS  479 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~  479 (491)
                      ||||||. +|.++++.
T Consensus       100 VleymP~-tL~~~~r~  114 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRH  114 (364)
T ss_pred             HHHhchH-HHHHHHHH
Confidence            9999985 89999995

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=98.89  E-value=6.4e-09  Score=103.41  Aligned_cols=86  Identities=20%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             ceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          395 NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      +.||+|+||+||++.. ..++.+|+|.++...  .......+.+|+.++..++||||+++.+.+...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999985 467899999986532  1134567889999999999999999999999999999999999999


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      +|.+++...
T Consensus        81 ~L~~~l~~~   89 (325)
T cd05594          81 ELFFHLSRE   89 (325)
T ss_pred             cHHHHHHhc
Confidence            999998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.89  E-value=7.4e-09  Score=100.91  Aligned_cols=90  Identities=21%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~E  466 (491)
                      +|...+.||.|++|.||++... .++.+|+|.+..........++.+|++++++++||||+++++.+...  ...++|||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            5667789999999999999974 57889999987654434557799999999999999999999988654  36789999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      |+++++|.++++.
T Consensus        82 ~~~~~~L~~~l~~   94 (287)
T cd06621          82 YCEGGSLDSIYKK   94 (287)
T ss_pred             ecCCCCHHHHHHH
Confidence            9999999998764

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=98.89  E-value=5.6e-09  Score=102.96  Aligned_cols=92  Identities=22%  Similarity=0.373  Sum_probs=77.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++... .++.+|+|.++..........+.+|+.++++++|+||+++++++...+..++||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            45777789999999999999864 57789999987554323445688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ ++|.+++...+
T Consensus        86 ~~-~~l~~~~~~~~   98 (309)
T cd07872          86 LD-KDLKQYMDDCG   98 (309)
T ss_pred             CC-CCHHHHHHhcC
Confidence            97 48998887643

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=98.89  E-value=5.2e-09  Score=104.38  Aligned_cols=91  Identities=18%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||.||++..+ .++.+|+|.+....  .......|.+|+.++..++|+||+++++.+...+..+||||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMD   81 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEe
Confidence            5777889999999999999875 46789999986432  21234568899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|++.
T Consensus        82 y~~~g~L~~~l~~~   95 (332)
T cd05623          82 YYVGGDLLTLLSKF   95 (332)
T ss_pred             ccCCCcHHHHHHHh
Confidence            99999999999864

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=98.89  E-value=4.8e-09  Score=104.37  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=73.8

Q ss_pred             cceeccC--CcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          394 SNFLGEG--GFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       394 ~~~lG~G--~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      .++||+|  +|++||++.. .+++.||+|++.... .....+.+.+|+.+++.++||||+++++.+...+..++|+||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            4679999  6889999985 467899999987543 22344667889999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +|+|.+++..+
T Consensus        83 ~~~l~~~~~~~   93 (327)
T cd08227          83 YGSAKDLICTH   93 (327)
T ss_pred             CCcHHHHHHhh
Confidence            99999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.88  E-value=2.2e-09  Score=102.94  Aligned_cols=86  Identities=26%  Similarity=0.508  Sum_probs=71.9

Q ss_pred             ceeccCCcceEEEEEEcC--------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          395 NFLGEGGFGSVYRGVLSD--------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~--------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +.||+|+||.||++..+.        ...+++|.+..... ...++|.+|+.+++.++||||+++++.+...+..++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHR-NYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhH-HHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            369999999999998532        23477787754432 445789999999999999999999999999899999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+.++
T Consensus        80 ~~~~g~L~~~l~~~~   94 (258)
T cd05078          80 YVKFGSLDTYLKKNK   94 (258)
T ss_pred             cCCCCcHHHHHhcCC
Confidence            999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=98.88  E-value=7.6e-09  Score=101.40  Aligned_cols=91  Identities=20%  Similarity=0.354  Sum_probs=79.0

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .+|...+.||+|++|.||++.. .+++.+++|.+..... ...+.+.+|+.+++.++|+||+++++.+...+..++|+||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc-chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence            4677778899999999999985 4678999998876543 3457789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.+++++.
T Consensus        99 ~~~~~L~~~~~~~  111 (296)
T cd06654          99 LAGGSLTDVVTET  111 (296)
T ss_pred             cCCCCHHHHHHhc
Confidence            9999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.88  E-value=8.1e-09  Score=100.26  Aligned_cols=92  Identities=32%  Similarity=0.570  Sum_probs=77.8

Q ss_pred             ccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++++..++||+|+||.||++...      ++..+++|.+..... ...+.|.+|+++++.++|+||+++++.+...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCH-HHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            35566788999999999999632      356789998875543 45678999999999999999999999999889999


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +++||+++|+|.++|+...
T Consensus        84 lv~e~~~~~~L~~~i~~~~  102 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHG  102 (280)
T ss_pred             EEEecCCCCCHHHHHHhcC
Confidence            9999999999999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.88  E-value=9.3e-09  Score=98.47  Aligned_cols=91  Identities=20%  Similarity=0.299  Sum_probs=80.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||+|++|.||++... .++.+++|++.........+++.+|+..+.+++|+|++++++.+...+..++|+||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            5667789999999999999875 488999999877654345678999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.+++...
T Consensus        82 ~~~~L~~~l~~~   93 (264)
T cd06623          82 DGGSLADLLKKV   93 (264)
T ss_pred             CCCcHHHHHHHc
Confidence            999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.88  E-value=9.4e-09  Score=100.40  Aligned_cols=91  Identities=22%  Similarity=0.349  Sum_probs=79.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.|+..+.||+|+||.||++... .+..+++|.+..... ...+.+.+|+.++++++|+||+++++.+......++||||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSE-EELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCH-HHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEec
Confidence            45677788999999999999864 478999999876543 4567899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|..++.+.
T Consensus        91 ~~~~~l~~~~~~~  103 (292)
T cd06644          91 CPGGAVDAIMLEL  103 (292)
T ss_pred             CCCCcHHHHHHhh
Confidence            9999999888654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.87  E-value=6.5e-09  Score=99.12  Aligned_cols=90  Identities=26%  Similarity=0.427  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||.||++.... ++.+++|.++....   .+++.+|++++++++|+||+++++.+...+..++++||
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED---LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH---HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            567778889999999999999764 78999999865432   57899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.++|...+
T Consensus        80 ~~~~~L~~~l~~~~   93 (256)
T cd06612          80 CGAGSVSDIMKITN   93 (256)
T ss_pred             CCCCcHHHHHHhCc
Confidence            99999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=98.87  E-value=6.3e-09  Score=101.07  Aligned_cols=83  Identities=23%  Similarity=0.263  Sum_probs=70.7

Q ss_pred             eccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|+||+||++... +++.+|+|.+.....  ....+.+..|+.+++.++|+||+++.+.+......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            699999999999854 678999999865422  12336688999999999999999999999988999999999999999


Q ss_pred             hhhhcc
Q 011189          474 FHHIHS  479 (491)
Q Consensus       474 ~~~L~~  479 (491)
                      .+++..
T Consensus        81 ~~~~~~   86 (280)
T cd05608          81 RYHIYN   86 (280)
T ss_pred             HHHHHh
Confidence            988864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=98.87  E-value=7.7e-09  Score=100.95  Aligned_cols=91  Identities=26%  Similarity=0.403  Sum_probs=78.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|++|.||++... +++.+|+|.+....  .....+.+.+|++++++++||||+++++.....+..++|||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            5677789999999999999864 57899999886532  22345678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.++++..
T Consensus        82 ~~~~~~L~~~~~~~   95 (290)
T cd05580          82 YVPGGELFSHLRKS   95 (290)
T ss_pred             cCCCCCHHHHHHHc
Confidence            99999999999765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=98.87  E-value=6.8e-09  Score=100.14  Aligned_cols=90  Identities=20%  Similarity=0.409  Sum_probs=75.4

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccch---------hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK---------IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~---------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      |...+.||+|++|.||+|.. .+++.+|+|.++....         ....+.+.+|+.++++++|+|++++++.+...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45567899999999999985 3678999998753211         1123568899999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++|+||+++|+|.++++..
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~  102 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTY  102 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhc
Confidence            99999999999999999865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.87  E-value=6.4e-09  Score=100.99  Aligned_cols=90  Identities=28%  Similarity=0.465  Sum_probs=76.5

Q ss_pred             cccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      +|+..+.||+|+||.||+|...      .++.||+|.++........+.|.+|+.++.+++||||+++++.+...+..++
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence            3455678999999999999853      2468999998765443445779999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhcc
Q 011189          464 VYEFVSNGTLFHHIHS  479 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~  479 (491)
                      ++||+++++|.++|..
T Consensus        86 ~~e~~~~~~l~~~l~~  101 (283)
T cd05091          86 IFSYCSHSDLHEFLVM  101 (283)
T ss_pred             EEEcCCCCcHHHHHHh
Confidence            9999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.87  E-value=6.1e-09  Score=103.95  Aligned_cols=92  Identities=28%  Similarity=0.429  Sum_probs=77.8

Q ss_pred             ccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK  459 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  459 (491)
                      .+|...+.||+|+||.||++...        ....+|+|.++........+++.+|+.++.++ +|+||+++++.+...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            35777889999999999999742        12368999887654434567899999999999 7999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++++||+++|+|.++|...
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~  112 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRAR  112 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=98.87  E-value=8.1e-09  Score=100.65  Aligned_cols=90  Identities=24%  Similarity=0.311  Sum_probs=75.7

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |+..+.||+|+||.||++... .++.+|+|.+....  .......+.+|+.++++++|+|++++.+.+...+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            556688999999999999854 67899999886532  112235678999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++..
T Consensus        82 ~~g~~L~~~l~~~   94 (285)
T cd05630          82 MNGGDLKFHIYHM   94 (285)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=98.87  E-value=7.4e-09  Score=99.54  Aligned_cols=91  Identities=23%  Similarity=0.411  Sum_probs=77.7

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      +|+..+.||+|++|.||++.. .+++.+|+|.+....     .....+.+.+|+.++++++|+||+++++.+...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            366678899999999999984 567899999886432     11235779999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      |+||+++++|.++|++.
T Consensus        81 v~e~~~~~~L~~~l~~~   97 (268)
T cd06630          81 FVEWMAGGSVSHLLSKY   97 (268)
T ss_pred             EEeccCCCcHHHHHHHh
Confidence            99999999999999764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=98.87  E-value=6.7e-09  Score=103.19  Aligned_cols=90  Identities=23%  Similarity=0.339  Sum_probs=72.5

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHH---HcCCCCccccEEeEEEeCCccEEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIV---SQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l---~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      |...+.||+|+||.||++... +++.||+|.++...  .....+.+.+|+.++   +.++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            345678999999999999864 57899999987542  112345677776655   567899999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|..+++..
T Consensus        81 ~E~~~~~~L~~~~~~~   96 (324)
T cd05589          81 MEYAAGGDLMMHIHTD   96 (324)
T ss_pred             EcCCCCCcHHHHhhcC
Confidence            9999999999988753

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.87  E-value=1.1e-08  Score=98.06  Aligned_cols=87  Identities=32%  Similarity=0.614  Sum_probs=72.0

Q ss_pred             ceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCccEEEEeccC
Q 011189          395 NFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKVPLLVYEFVS  469 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~Ey~~  469 (491)
                      +.||+|+||.||+|...    ....+|+|.+.........+.+.+|+.+++.++||||+++++.+.. .+..++++||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999853    2357999998654443556789999999999999999999998764 456889999999


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                      +|+|.++|+...
T Consensus        81 ~~~L~~~~~~~~   92 (262)
T cd05058          81 HGDLRNFIRSET   92 (262)
T ss_pred             CCCHHHHHHhcC
Confidence            999999998653

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=98.87  E-value=9.6e-09  Score=102.38  Aligned_cols=86  Identities=22%  Similarity=0.275  Sum_probs=72.4

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++... +++.+|+|.++...  .....+.+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 57899999987532  223456688899888877 899999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.+++...
T Consensus        81 ~~L~~~~~~~   90 (329)
T cd05618          81 GDLMFHMQRQ   90 (329)
T ss_pred             CCHHHHHHHc
Confidence            9999988754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.86  E-value=7.7e-09  Score=101.52  Aligned_cols=92  Identities=24%  Similarity=0.391  Sum_probs=77.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++... .++.||+|.++..........+.+|+.++++++|+||+++++.+...+..++|+||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            45777789999999999999864 57889999987554323445688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ ++|.+++....
T Consensus        86 ~~-~~l~~~l~~~~   98 (301)
T cd07873          86 LD-KDLKQYLDDCG   98 (301)
T ss_pred             cc-cCHHHHHHhcC
Confidence            97 69999987643

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.86  E-value=6.5e-09  Score=100.91  Aligned_cols=91  Identities=26%  Similarity=0.490  Sum_probs=72.6

Q ss_pred             cccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      +|+..+.||+|+||.||++.+. +++    .+++|.+..........++..|+.++++++||||+++++++. ....+++
T Consensus         8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i   86 (279)
T cd05111           8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLV   86 (279)
T ss_pred             hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEE
Confidence            4566688999999999999863 343    478888765433234567888999999999999999999875 4567899


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||+++|+|.++++...
T Consensus        87 ~e~~~~gsL~~~l~~~~  103 (279)
T cd05111          87 TQLSPLGSLLDHVRQHR  103 (279)
T ss_pred             EEeCCCCcHHHHHHhcc
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.86  E-value=7.4e-09  Score=100.98  Aligned_cols=92  Identities=23%  Similarity=0.388  Sum_probs=77.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|++|.||++..+ +++.+|+|.+...........+.+|+.++++++|+||+++++++...+..++|+||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            46777789999999999999864 67899999986543322335678999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ ++|.+++....
T Consensus        85 ~~-~~L~~~~~~~~   97 (291)
T cd07844          85 LD-TDLKQYMDDCG   97 (291)
T ss_pred             CC-CCHHHHHHhCC
Confidence            98 59999987643

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=98.86  E-value=7.8e-09  Score=101.18  Aligned_cols=91  Identities=22%  Similarity=0.379  Sum_probs=78.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++.. .++..+++|.+..... ...+.+.+|+.++++++||||+++++.+...+..++|+||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ-PKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccc-hHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence            5677778999999999999985 4678899999865433 3457789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.+++.+.
T Consensus        98 ~~~~~L~~~~~~~  110 (293)
T cd06647          98 LAGGSLTDVVTET  110 (293)
T ss_pred             CCCCcHHHHHhhc
Confidence            9999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.86  E-value=9.7e-09  Score=98.05  Aligned_cols=91  Identities=22%  Similarity=0.383  Sum_probs=78.0

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|+||.+|++.. .+++.+++|.+.... .....+++.+|+.++++++|+||+++++.+...+..++|+||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            366778999999999999985 467899999986432 223456899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.++++..
T Consensus        81 ~~~~~l~~~~~~~   93 (256)
T cd08218          81 CEGGDLYKKINAQ   93 (256)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.86  E-value=9.3e-09  Score=100.42  Aligned_cols=91  Identities=27%  Similarity=0.523  Sum_probs=77.0

Q ss_pred             cccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      +|...+.||+|+||.||+++..      +...+++|.+..... ...+.|.+|+.++++++|+||+++++.+...+..++
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL-AARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH-HHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            4666788999999999999742      345688998875543 445779999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++++|.++|+...
T Consensus        85 v~e~~~~~~L~~~i~~~~  102 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHG  102 (291)
T ss_pred             EEecCCCCcHHHHHHhcC
Confidence            999999999999998643

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.86  E-value=1.1e-08  Score=98.64  Aligned_cols=90  Identities=32%  Similarity=0.571  Sum_probs=73.8

Q ss_pred             ccccceeccCCcceEEEEEEcC----CcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc-----
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV-----  460 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----  460 (491)
                      |...+.||+|+||.||++....    +..+|+|.++... .....+.+.+|+++++.++|+||+++++.+...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            3456789999999999998642    3679999987542 22345789999999999999999999999876554     


Q ss_pred             -cEEEEeccCCCChhhhhccC
Q 011189          461 -PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 -~~lv~Ey~~~GsL~~~L~~~  480 (491)
                       .++++||+++|+|.+++...
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~  101 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYS  101 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHh
Confidence             78999999999999998654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.86  E-value=4.1e-09  Score=101.44  Aligned_cols=86  Identities=36%  Similarity=0.682  Sum_probs=73.3

Q ss_pred             ceeccCCcceEEEEEEcC-------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          395 NFLGEGGFGSVYRGVLSD-------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~-------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.||+|+||.||++...+       +..+++|.+..........+|.+|+.+++.++||||+++++.+...+..++|+||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            358999999999998642       2578999876544334567899999999999999999999999988999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++|++.
T Consensus        81 ~~~~~L~~~l~~~   93 (269)
T cd05044          81 MEGGDLLSYLRDA   93 (269)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999864

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.86  E-value=7.9e-09  Score=98.58  Aligned_cols=86  Identities=36%  Similarity=0.655  Sum_probs=76.0

Q ss_pred             ceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||.||++....    +..+++|.+.........+.+.+|++++..++|+|++++++.+......++|+||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            469999999999998653    7789999987765433467899999999999999999999999998899999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      ++|.++++..
T Consensus        81 ~~L~~~l~~~   90 (262)
T cd00192          81 GDLLDYLRKS   90 (262)
T ss_pred             CcHHHHHhhc
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.85  E-value=4.5e-09  Score=100.28  Aligned_cols=92  Identities=20%  Similarity=0.433  Sum_probs=77.8

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...+.||+|+||.||++... ++..+|+|.+.... .....+.+.+|+.++++++|+||+++++.+...+..++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            3566788999999999999864 57889999986542 113446788999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.+++....
T Consensus        81 ~~~~~L~~~~~~~~   94 (257)
T cd08225          81 CDGGDLMKRINRQR   94 (257)
T ss_pred             CCCCcHHHHHHhcc
Confidence            99999999997643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=98.85  E-value=7.3e-09  Score=100.60  Aligned_cols=89  Identities=21%  Similarity=0.363  Sum_probs=75.7

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |+..+.||+|+||.||++... .+..+++|.+..... ...+.+.+|+++++.++|+|++++++.+...+..++|+||++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSE-EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCH-HHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            344567999999999999865 467788888865443 456789999999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +|+|..++++.
T Consensus        86 ~~~l~~~~~~~   96 (282)
T cd06643          86 GGAVDAVMLEL   96 (282)
T ss_pred             CCcHHHHHHhc
Confidence            99999988753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.85  E-value=1.1e-08  Score=100.66  Aligned_cols=92  Identities=17%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||.||++... .++.|++|.+.....  ....+.+.+|+.+++.++|+||+++++.+...+..++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            5677789999999999999864 467899998865432  2345678899999999999999999999999899999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++++|.++|+..+
T Consensus        82 ~~~g~~L~~~l~~~~   96 (305)
T cd05609          82 YVEGGDCATLLKNIG   96 (305)
T ss_pred             cCCCCcHHHHHHHcC
Confidence            999999999997653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.85  E-value=5.8e-09  Score=100.56  Aligned_cols=93  Identities=20%  Similarity=0.433  Sum_probs=76.6

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC-----
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT-----  458 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-----  458 (491)
                      .+...|+..+.||+|+||+||++... .++.+|+|.+.....  ....+.+|+.++.++ +|+||+++++.+...     
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~--~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD--EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM   80 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc--cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCC
Confidence            34566777788999999999999864 578899999865432  346788999999998 799999999998753     


Q ss_pred             -CccEEEEeccCCCChhhhhccC
Q 011189          459 -KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 -~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                       ...+++|||+++|+|.+++...
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~  103 (272)
T cd06637          81 DDQLWLVMEFCGAGSVTDLIKNT  103 (272)
T ss_pred             CcEEEEEEEcCCCCcHHHHHHhc
Confidence             3578999999999999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.85  E-value=7.2e-09  Score=100.52  Aligned_cols=84  Identities=24%  Similarity=0.244  Sum_probs=70.3

Q ss_pred             eccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|+||.||++..+ .++.+|+|.+.....  ......+..|++++++++||||+++.+.+......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999854 588999999864321  11234566799999999999999999999988999999999999999


Q ss_pred             hhhhccC
Q 011189          474 FHHIHSK  480 (491)
Q Consensus       474 ~~~L~~~  480 (491)
                      .++++..
T Consensus        81 ~~~~~~~   87 (277)
T cd05607          81 KYHIYNV   87 (277)
T ss_pred             HHHHHhc
Confidence            9988754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=98.85  E-value=4.7e-09  Score=102.03  Aligned_cols=98  Identities=20%  Similarity=0.405  Sum_probs=80.0

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ  457 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  457 (491)
                      .++++..+.++|+..+.||+|+||.||++... .++.+|+|.++....  ...++.+|+.++.++ +|+||+++++++..
T Consensus         9 ~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD--IDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc--hHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            34556667888999999999999999999864 578899998765432  235688899999999 69999999998853


Q ss_pred             -----CCccEEEEeccCCCChhhhhcc
Q 011189          458 -----TKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       458 -----~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                           .+..++||||+++|+|.++|+.
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~  113 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKG  113 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHH
Confidence                 3468999999999999998864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.85  E-value=1.4e-08  Score=98.76  Aligned_cols=89  Identities=30%  Similarity=0.426  Sum_probs=73.6

Q ss_pred             cccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEE
Q 011189          392 DKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLV  464 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  464 (491)
                      ...+.||+|+||+||.+.+     .+++.||+|.++..........|.+|++++++++||||+++++++...  ...+++
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   86 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLI   86 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEE
Confidence            5668899999999988653     356789999987654334557789999999999999999999988664  357899


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.+++...
T Consensus        87 ~e~~~~~~l~~~~~~~  102 (283)
T cd05080          87 MEYVPLGSLRDYLPKH  102 (283)
T ss_pred             ecCCCCCCHHHHHHHc
Confidence            9999999999999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.85  E-value=7e-09  Score=103.74  Aligned_cols=93  Identities=29%  Similarity=0.418  Sum_probs=76.4

Q ss_pred             hccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC-C
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT-K  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-~  459 (491)
                      .++|+..++||+|+||.||++...      .++.||+|+++........+.+.+|+.++.++ +|+||+++++.+... .
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~   85 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG   85 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence            346778899999999999999632      24689999987554334456788999999999 899999999988754 4


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++++||+++|+|.++|+..
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~  106 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSK  106 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhc
Confidence            678999999999999999764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=98.85  E-value=6.1e-09  Score=101.39  Aligned_cols=89  Identities=21%  Similarity=0.352  Sum_probs=74.3

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...+.||+|+||.||++..+ +++.+|+|++.... .....+.+.+|+.++++++|+||+++++++...+..++||||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            5777889999999999999975 57889999986542 223456788999999999999999999999999999999999


Q ss_pred             cCCCChhhhhc
Q 011189          468 VSNGTLFHHIH  478 (491)
Q Consensus       468 ~~~GsL~~~L~  478 (491)
                      ++++.|..+.+
T Consensus        82 ~~~~~l~~~~~   92 (287)
T cd07848          82 VEKNMLELLEE   92 (287)
T ss_pred             CCCCHHHHHHh
Confidence            99876665443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.85  E-value=1.1e-08  Score=99.09  Aligned_cols=90  Identities=23%  Similarity=0.421  Sum_probs=77.2

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC---CCccccEEeEEEeCCccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN---HKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      |+..+.||+|+||.||++.. .+++.+++|.++........+++.+|+.++++++   |||++++++.+......++|||
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e   82 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIME   82 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEe
Confidence            55567899999999999995 4688999999876543345677889999999996   9999999999999889999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.++++..
T Consensus        83 ~~~~~~L~~~~~~~   96 (277)
T cd06917          83 YAEGGSVRTLMKAG   96 (277)
T ss_pred             cCCCCcHHHHHHcc
Confidence            99999999998754

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.85  E-value=1e-09  Score=94.92  Aligned_cols=88  Identities=28%  Similarity=0.462  Sum_probs=72.3

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...++||+|.||+|+|++. +..+.||+|+++..+ ++......++|+.++++++|+|||+|+......+.+-||+||+
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~c   83 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHh
Confidence            44557899999999999985 456889999987654 3244577899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcc
Q 011189          469 SNGTLFHHIHS  479 (491)
Q Consensus       469 ~~GsL~~~L~~  479 (491)
                      . .+|..|..+
T Consensus        84 d-qdlkkyfds   93 (292)
T KOG0662|consen   84 D-QDLKKYFDS   93 (292)
T ss_pred             h-HHHHHHHHh
Confidence            5 466666554

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.84  E-value=1.2e-08  Score=98.39  Aligned_cols=88  Identities=35%  Similarity=0.584  Sum_probs=70.6

Q ss_pred             cccceeccCCcceEEEEEEcCCc---EEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------Ccc
Q 011189          392 DKSNFLGEGGFGSVYRGVLSDDT---QVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------KVP  461 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~~~~---~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~  461 (491)
                      ...+.||+|+||.||+|......   .+|+|.++... .....+.|.+|+.+++.++|+||+++++.+...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            34578999999999999875432   58999876542 224467899999999999999999999987542      256


Q ss_pred             EEEEeccCCCChhhhhcc
Q 011189          462 LLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~  479 (491)
                      ++++||+++|+|.+++..
T Consensus        82 ~~v~e~~~~~~l~~~~~~   99 (272)
T cd05075          82 VVILPFMKHGDLHSFLLY   99 (272)
T ss_pred             EEEEEeCCCCcHHHHHHH
Confidence            899999999999998853

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.84  E-value=1.5e-08  Score=97.15  Aligned_cols=91  Identities=27%  Similarity=0.456  Sum_probs=79.0

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...+.||+|+||.||++... +++.+++|.++.... ....+.+.+|+.+++.++|+||+++++.....+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            3566788999999999999864 678999999865533 23567899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.++++..
T Consensus        81 ~~~~~L~~~~~~~   93 (264)
T cd06626          81 CSGGTLEELLEHG   93 (264)
T ss_pred             CCCCcHHHHHhhc
Confidence            9999999999865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.84  E-value=1.4e-08  Score=97.24  Aligned_cols=92  Identities=18%  Similarity=0.395  Sum_probs=78.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|...+.||+|++|.||++.. ..++.+++|.+....    .....+.+.+|+.++++++||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4677889999999999999985 467899999876432    11234678999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      |+||+++++|.+++...
T Consensus        82 v~e~~~~~~l~~~~~~~   98 (263)
T cd06625          82 FMEYMPGGSVKDQLKAY   98 (263)
T ss_pred             EEEECCCCcHHHHHHHh
Confidence            99999999999998754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.84  E-value=8.8e-09  Score=98.84  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=79.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +|+..+.||+|++|.||++... +++.+++|.+.........+++.+|+.++++++||||+++++.+...+..++++||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            4556678999999999999875 578999999876644355678999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.+++...
T Consensus        82 ~~~~L~~~~~~~   93 (265)
T cd06605          82 DGGSLDKILKEV   93 (265)
T ss_pred             CCCcHHHHHHHc
Confidence            999999999865

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=98.84  E-value=1.2e-08  Score=97.22  Aligned_cols=92  Identities=24%  Similarity=0.374  Sum_probs=78.5

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...+.||+|++|.||++.. ..++.+++|.+.... .....+.+.+|+.++++++|+|++++++.....+..++|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            366678999999999999885 467889999986542 223467899999999999999999999999888999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++++|.++++...
T Consensus        81 ~~~~~L~~~~~~~~   94 (256)
T cd08220          81 APGGTLAEYIQKRC   94 (256)
T ss_pred             CCCCCHHHHHHHhc
Confidence            99999999998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.84  E-value=8.8e-09  Score=102.21  Aligned_cols=86  Identities=28%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||+||+++.. +++.||+|.++...  .....+.+.+|..++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999864 57899999986532  113456788899888876 699999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++++..
T Consensus        81 g~L~~~i~~~   90 (320)
T cd05590          81 GDLMFHIQKS   90 (320)
T ss_pred             chHHHHHHHc
Confidence            9999998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=98.84  E-value=1e-08  Score=99.49  Aligned_cols=90  Identities=28%  Similarity=0.436  Sum_probs=75.7

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|++|.||++... ++..+|+|.++... .......+.+|+.++.+++||||+++++.+..++..++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (285)
T cd07861           2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFL   81 (285)
T ss_pred             ceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecC
Confidence            566788999999999999864 67899999986542 2123467889999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      + ++|.++++...
T Consensus        82 ~-~~l~~~~~~~~   93 (285)
T cd07861          82 S-MDLKKYLDSLP   93 (285)
T ss_pred             C-CCHHHHHhcCC
Confidence            7 68999987643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=98.84  E-value=6.6e-09  Score=101.01  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=78.5

Q ss_pred             cccccceeccCCcceEEEEEEcC-CcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|..|+||.+++++ +..+|+|.+....-  .....+...|-+||+.++||-+..|++.+...+..+|+||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence            44455779999999999999865 48899999876532  1334667789999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCCC
Q 011189          467 FVSNGTLFHHIHSKSS  482 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~  482 (491)
                      |++||+|...++.+..
T Consensus       158 yCpGGdL~~LrqkQp~  173 (459)
T KOG0610|consen  158 YCPGGDLHSLRQKQPG  173 (459)
T ss_pred             cCCCccHHHHHhhCCC
Confidence            9999999999887643

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.83  E-value=1.1e-08  Score=101.53  Aligned_cols=87  Identities=23%  Similarity=0.282  Sum_probs=72.6

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||.||+++.. .++.+|+|.++...  .....+.+..|.+++..+ +||||+++++++...+..+|||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36999999999999864 47899999986532  223446688899998866 799999999999999999999999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|..+|...+
T Consensus        81 ~~L~~~l~~~~   91 (321)
T cd05591          81 GDLMFQIQRSR   91 (321)
T ss_pred             CcHHHHHHHcC
Confidence            99999987553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.83  E-value=2.2e-09  Score=110.04  Aligned_cols=84  Identities=31%  Similarity=0.492  Sum_probs=75.7

Q ss_pred             eeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChh
Q 011189          396 FLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLF  474 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~  474 (491)
                      +||+|.||+||.|+. +....+|||.+...+. +..+.+..|+.+.++++|.|||+.+|.+.+.+...|.||-+|||+|.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekds-r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS-REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccc-hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            599999999999984 4456899999987765 56788999999999999999999999999999999999999999999


Q ss_pred             hhhccC
Q 011189          475 HHIHSK  480 (491)
Q Consensus       475 ~~L~~~  480 (491)
                      ++|+++
T Consensus       661 sLLrsk  666 (1226)
T KOG4279|consen  661 SLLRSK  666 (1226)
T ss_pred             HHHHhc
Confidence            999964

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.83  E-value=1.1e-08  Score=97.73  Aligned_cols=89  Identities=29%  Similarity=0.500  Sum_probs=75.2

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++.. .+..+++|.++...   ..+.|.+|+.++++++|+|++++++.... .+..++++||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   81 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCCc---hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEEC
Confidence            3567778999999999999987 57789999886543   34679999999999999999999998654 4578899999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++++.+.
T Consensus        82 ~~~~~L~~~~~~~~   95 (256)
T cd05082          82 MAKGSLVDYLRSRG   95 (256)
T ss_pred             CCCCcHHHHHHhcC
Confidence            99999999998654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.83  E-value=8e-09  Score=102.01  Aligned_cols=89  Identities=24%  Similarity=0.347  Sum_probs=72.5

Q ss_pred             HhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchh-------------hHHHHHHHHHHHHHcCCCCccccE
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKI-------------RVSQEFQHEMGIVSQINHKNVVKI  451 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~-------------~~~~~f~~E~~~l~~l~H~niv~l  451 (491)
                      +..+.|...+.||+|.||.|-++.. .+++.+|||.+......             ...+...+|+.+|++++|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            4457788889999999999999984 46889999998643211             113578999999999999999999


Q ss_pred             EeEEEe--CCccEEEEeccCCCChh
Q 011189          452 LGLCLQ--TKVPLLVYEFVSNGTLF  474 (491)
Q Consensus       452 ~g~~~~--~~~~~lv~Ey~~~GsL~  474 (491)
                      +.+..+  .+..|||+||+..|.+.
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~  198 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVK  198 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccc
Confidence            999865  45899999999988764

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.83  E-value=1.6e-08  Score=96.43  Aligned_cols=90  Identities=34%  Similarity=0.649  Sum_probs=77.7

Q ss_pred             cccceeccCCcceEEEEEEcC-----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          392 DKSNFLGEGGFGSVYRGVLSD-----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ...+.||+|+||.||++...+     +..+|+|.+.........+.+.+|++++..++|+||+++++.+...+..+++||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            345789999999999998643     378999999766543356789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++++|.++++...
T Consensus        82 ~~~~~~l~~~~~~~~   96 (258)
T smart00219       82 YMEGGDLLDYLRKNR   96 (258)
T ss_pred             ccCCCCHHHHHHhhh
Confidence            999999999998654

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.82  E-value=1.3e-08  Score=100.78  Aligned_cols=86  Identities=23%  Similarity=0.319  Sum_probs=71.2

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++... .++.||+|.++...  .....+.+..|..++..+ +||||+++++.+...+..+|||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36999999999999964 46889999987542  112345677788888764 899999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++|++.
T Consensus        81 g~L~~~l~~~   90 (316)
T cd05619          81 GDLMFHIQSC   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.82  E-value=1.6e-08  Score=100.86  Aligned_cols=91  Identities=20%  Similarity=0.349  Sum_probs=75.8

Q ss_pred             cccccceeccCCcceEEEEEE----cCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCcc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  461 (491)
                      +|+..+.||+|+||.||+++.    ..++.+|+|.+....   .....+.+.+|+.++..+ +|+||+++++.+...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            366778999999999999874    357899999986432   212346688999999999 599999999999989999


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++|+|.++|..+
T Consensus        81 ~lv~e~~~~g~L~~~l~~~   99 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQR   99 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHc
Confidence            9999999999999999765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.82  E-value=1.7e-08  Score=97.01  Aligned_cols=92  Identities=20%  Similarity=0.367  Sum_probs=75.5

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--Ccc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  461 (491)
                      .+|...+.||+|+||.||++.. ++++.||+|.+....    .....+.+.+|+.++.+++|+||+++++++.+.  ..+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            3577788999999999999986 457899999875321    123456789999999999999999999988664  457


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||+++|+|.+++.+.
T Consensus        82 ~~v~e~~~~~~L~~~l~~~  100 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSY  100 (265)
T ss_pred             EEEEEecCCCcHHHHHHHc
Confidence            7999999999999999764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.82  E-value=1.7e-08  Score=96.61  Aligned_cols=91  Identities=23%  Similarity=0.369  Sum_probs=79.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++... +++.+++|.+..... ...+.+.+|+.++++++||||+++++.....+..+++|||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG-DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch-hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            56777889999999999999864 567899999876543 3557899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.++++..
T Consensus        82 ~~~~~l~~~~~~~   94 (262)
T cd06613          82 CGGGSLQDIYQVT   94 (262)
T ss_pred             CCCCcHHHHHHhh
Confidence            9999999998765

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.82  E-value=1.6e-08  Score=98.50  Aligned_cols=93  Identities=24%  Similarity=0.340  Sum_probs=81.4

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++.|...+.||+|++|.||++..+ ++..+++|.+.....  ..+.+.+|++++++++|+|++++++.+...+..++++
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   94 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM   94 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence            4556777788999999999999975 578899999876543  4567899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++++|.+++....
T Consensus        95 e~~~~~~L~~~l~~~~  110 (286)
T cd06614          95 EYMDGGSLTDIITQNF  110 (286)
T ss_pred             eccCCCcHHHHHHHhc
Confidence            9999999999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.82  E-value=2e-08  Score=97.36  Aligned_cols=92  Identities=27%  Similarity=0.536  Sum_probs=76.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|+..+.||+|+||+||+|.+. +++    .||+|.++........+++.+|+.++..++|+||+++++.+.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEE
Confidence            45677789999999999999853 443    4899998765544556789999999999999999999998865 45779


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||+++|+|.++++.+.
T Consensus        86 ~~~~~~~g~l~~~l~~~~  103 (279)
T cd05109          86 VTQLMPYGCLLDYVRENK  103 (279)
T ss_pred             EEEcCCCCCHHHHHhhcc
Confidence            999999999999998753

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.81  E-value=9.6e-09  Score=100.56  Aligned_cols=90  Identities=28%  Similarity=0.433  Sum_probs=76.5

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh----hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI----RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      |+..+.||+|++|.||+|... +++.+++|.++.....    .....+.+|++++++++|+||+++++.+...+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            566678999999999999864 5789999998754321    23456788999999999999999999999988999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+ +|+|.++|++..
T Consensus        82 e~~-~~~L~~~i~~~~   96 (298)
T cd07841          82 EFM-ETDLEKVIKDKS   96 (298)
T ss_pred             ccc-CCCHHHHHhccC
Confidence            999 899999998754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.81  E-value=7e-09  Score=99.20  Aligned_cols=91  Identities=20%  Similarity=0.279  Sum_probs=78.4

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|...+.||+|+||.||++... .+..+|+|.+....  .....+.+.+|+.++++++||||+++++.+...+..++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            3666789999999999999864 58899999986532  22345789999999999999999999999998999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.++|...
T Consensus        81 ~~~~~~L~~~l~~~   94 (258)
T cd05578          81 LLLGGDLRYHLSQK   94 (258)
T ss_pred             CCCCCCHHHHHHhc
Confidence            99999999999765

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.81  E-value=1.5e-08  Score=100.52  Aligned_cols=86  Identities=22%  Similarity=0.376  Sum_probs=69.7

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHH-HHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMG-IVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||+||+++.. +++.+|+|.+....  .......+.+|.. +++.++||||+++++.+...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999864 57899999986532  1123345666654 57889999999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.+++..+
T Consensus        81 ~~L~~~l~~~   90 (321)
T cd05603          81 GELFFHLQRE   90 (321)
T ss_pred             CCHHHHHHHc
Confidence            9999988754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.81  E-value=2.1e-08  Score=95.96  Aligned_cols=86  Identities=31%  Similarity=0.559  Sum_probs=71.7

Q ss_pred             ceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||.||+|.+..    +..+|+|.+.........+++.+|+.++++++|+||+++++.+. .+..++|+||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            469999999999997532    26899999876654345578999999999999999999999765 5567999999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|.++|+...
T Consensus        80 ~~L~~~l~~~~   90 (257)
T cd05060          80 GPLLKYLKKRR   90 (257)
T ss_pred             CcHHHHHHhCC
Confidence            99999998654

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=98.81  E-value=5e-09  Score=101.79  Aligned_cols=91  Identities=26%  Similarity=0.405  Sum_probs=76.8

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|+||.||++..+ .++.+|+|.+..... ....+.+.+|+++++.++|+||+++++++...+..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            5667789999999999999975 578999998765432 12346788999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.++++..
T Consensus        82 ~~~~~l~~~~~~~   94 (286)
T cd07846          82 VDHTVLDDLEKYP   94 (286)
T ss_pred             CCccHHHHHHhcc
Confidence            9999888877654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.81  E-value=2.3e-08  Score=95.63  Aligned_cols=84  Identities=27%  Similarity=0.527  Sum_probs=70.3

Q ss_pred             eeccCCcceEEEEEEc---CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          396 FLGEGGFGSVYRGVLS---DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      .||+|+||.||+|.++   ++..+|+|.++... .....++|.+|+.+++.++|+||+++++.+. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            5899999999999753   56789999986543 2234578999999999999999999999874 55678999999999


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      +|.+++...
T Consensus        81 ~L~~~l~~~   89 (257)
T cd05116          81 PLNKFLQKN   89 (257)
T ss_pred             cHHHHHHhc
Confidence            999999754

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.81  E-value=1.6e-08  Score=99.22  Aligned_cols=91  Identities=20%  Similarity=0.389  Sum_probs=78.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .+|...+.||.|++|.||++.. .+++.|++|.+..... ...+.+.+|+.+++.++|+|++++++.+...+..++|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ-PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC-chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEe
Confidence            4577788999999999999984 5688999998865433 3457789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.+++...
T Consensus        98 ~~~~~L~~~~~~~  110 (296)
T cd06655          98 LAGGSLTDVVTET  110 (296)
T ss_pred             cCCCcHHHHHHhc
Confidence            9999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.81  E-value=2.3e-08  Score=96.04  Aligned_cols=90  Identities=26%  Similarity=0.471  Sum_probs=75.5

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccch--------hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK--------IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~--------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      |.....||+|++|.||+|.. .+++.+|+|.+.....        ....+.+.+|+.++++++||||+++++.+...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45567899999999999985 4578999998754321        11235688999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||+++++|.++|.+.
T Consensus        82 ~lv~e~~~~~~L~~~l~~~  100 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNY  100 (267)
T ss_pred             EEEEEecCCCCHHHHHHhc
Confidence            9999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.81  E-value=8.3e-09  Score=110.85  Aligned_cols=97  Identities=28%  Similarity=0.499  Sum_probs=82.2

Q ss_pred             HHhhccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEE
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLC  455 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~  455 (491)
                      +...+++...+.||+|.||+|++|.+.        ....||||.++......+.+.+..|+.+|..+ +|+||+.|+|+|
T Consensus       292 e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~  371 (609)
T KOG0200|consen  292 EIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGAC  371 (609)
T ss_pred             eechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeee
Confidence            333444455568999999999999842        14579999998766546778999999999999 699999999999


Q ss_pred             EeCCccEEEEeccCCCChhhhhccCC
Q 011189          456 LQTKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       456 ~~~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..+++.++|+||+++|+|.+||+.++
T Consensus       372 t~~~~~~~v~Ey~~~G~L~~~Lr~~r  397 (609)
T KOG0200|consen  372 TQDGPLYVIVEYAEHGDLLEFLRKKR  397 (609)
T ss_pred             ccCCceEEEEEeccCCcHHHHHHhcc
Confidence            99999999999999999999999876

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.81  E-value=1.6e-08  Score=100.54  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=74.8

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCC-ccccEEeEEEeCCccEEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHK-NVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~lv~  465 (491)
                      +|...+.||+|+||.||++... .++.+|+|.++...  .....+.+..|.+++..++|+ +|+++.+++...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            3666788999999999999864 46789999986532  223456788999999999764 5888999998889999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++++..
T Consensus        81 E~~~~g~L~~~~~~~   95 (324)
T cd05587          81 EYVNGGDLMYHIQQV   95 (324)
T ss_pred             cCCCCCcHHHHHHHc
Confidence            999999999999764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.81  E-value=1.6e-08  Score=100.23  Aligned_cols=86  Identities=24%  Similarity=0.322  Sum_probs=72.6

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++... +++.+|+|.++...  .......+.+|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999865 46799999987542  223456678899999888 799999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|..++++.
T Consensus        81 ~~L~~~~~~~   90 (318)
T cd05570          81 GDLMFHIQRS   90 (318)
T ss_pred             CCHHHHHHHc
Confidence            9999998765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.80  E-value=4.8e-09  Score=104.75  Aligned_cols=93  Identities=24%  Similarity=0.304  Sum_probs=78.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc-cEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV-PLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-~~lv~  465 (491)
                      ++|...+++|+|+||.++..+.+ ++..+++|++.... ....++...+|+.++++++|||||.+.+.+.+.+. .+|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            45666789999999999877643 56789999987543 22345678999999999999999999999999887 89999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||++||+|.+.|...+
T Consensus        84 ~Y~eGg~l~~~i~~~k   99 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQK   99 (426)
T ss_pred             eecCCCCHHHHHHHHh
Confidence            9999999999998764

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.80  E-value=1.6e-08  Score=100.19  Aligned_cols=86  Identities=22%  Similarity=0.317  Sum_probs=70.1

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||.||++... .++.||+|.++...  .....+.+..|..++..+ +||||+++++.+...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999864 57789999987532  112345566777777654 899999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++++..
T Consensus        81 g~L~~~~~~~   90 (316)
T cd05592          81 GDLMFHIQSS   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.79  E-value=2.1e-08  Score=99.86  Aligned_cols=86  Identities=23%  Similarity=0.280  Sum_probs=72.9

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++... +++.+|+|.++...  .....+.+.+|+.++.++ +|+||+++++++...+..+|||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 56899999987542  223456788999999888 699999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.+++...
T Consensus        81 ~~L~~~~~~~   90 (327)
T cd05617          81 GDLMFHMQRQ   90 (327)
T ss_pred             CcHHHHHHHc
Confidence            9999988754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=98.79  E-value=1.3e-08  Score=99.32  Aligned_cols=99  Identities=26%  Similarity=0.437  Sum_probs=82.0

Q ss_pred             ecHHHHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEE
Q 011189          379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCL  456 (491)
Q Consensus       379 ~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  456 (491)
                      +..+++..++++|...+.||+|+||.||++.. .+++.+|+|.+.....  ....+.+|+.++.++ +|||++++++.+.
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~--~~~~~~~e~~~l~~l~~h~ni~~~~~~~~   89 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD--VDEEIEAEYNILQSLPNHPNVVKFYGMFY   89 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc--HHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence            44566667788999999999999999999986 4678999998865432  335677899999998 8999999999987


Q ss_pred             eCC-----ccEEEEeccCCCChhhhhcc
Q 011189          457 QTK-----VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       457 ~~~-----~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ..+     ..++|+||+++|+|.++++.
T Consensus        90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~  117 (291)
T cd06639          90 KADKLVGGQLWLVLELCNGGSVTELVKG  117 (291)
T ss_pred             eccccCCCeeEEEEEECCCCcHHHHHHH
Confidence            543     57899999999999999874

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.79  E-value=2.2e-08  Score=99.47  Aligned_cols=86  Identities=22%  Similarity=0.372  Sum_probs=70.0

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHH-HHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMG-IVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++... +++.||+|.+....  .......+.+|.. +++.++||||+++++.+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            36999999999999964 68899999986532  1123345566655 56789999999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++++.+
T Consensus        81 g~L~~~l~~~   90 (323)
T cd05575          81 GELFFHLQRE   90 (323)
T ss_pred             CCHHHHHHhc
Confidence            9999999765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=98.79  E-value=1.4e-08  Score=111.90  Aligned_cols=94  Identities=21%  Similarity=0.355  Sum_probs=78.1

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--Ccc
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVP  461 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  461 (491)
                      ...++|...+.||+|+||+||++... .+..+|+|.+.... .......|.+|+.++.+++|||||++++.+...  ..+
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34567888899999999999999864 46788999876542 223457799999999999999999999988653  468


Q ss_pred             EEEEeccCCCChhhhhcc
Q 011189          462 LLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~  479 (491)
                      +|||||+++|+|.++|+.
T Consensus        90 yIVMEY~~gGSL~~lL~k  107 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQK  107 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHH
Confidence            899999999999999975

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=98.79  E-value=2.1e-08  Score=97.37  Aligned_cols=91  Identities=23%  Similarity=0.394  Sum_probs=76.4

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|++|.||++... +++.+|+|++.... .....+.+.+|+.++++++|+|++++++.+...+..++|+||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~   81 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEY   81 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEec
Confidence            5667788999999999999875 57899999876432 212345688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|..+++..
T Consensus        82 ~~~~~l~~~~~~~   94 (286)
T cd07847          82 CDHTVLNELEKNP   94 (286)
T ss_pred             cCccHHHHHHhCC
Confidence            9998888877654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.79  E-value=1.7e-08  Score=100.24  Aligned_cols=90  Identities=20%  Similarity=0.226  Sum_probs=73.9

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      |...+.||+|+||+||++... +++.||+|.+....  .....+.+..|..++..+. |++|+++.+++...+..+||||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            556688999999999999854 67899999987532  1133466888999998885 5778889999888889999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++++..
T Consensus        82 y~~~g~L~~~i~~~   95 (323)
T cd05615          82 YVNGGDLMYHIQQV   95 (323)
T ss_pred             CCCCCcHHHHHHHc
Confidence            99999999999764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.79  E-value=1.7e-08  Score=98.45  Aligned_cols=93  Identities=22%  Similarity=0.346  Sum_probs=77.3

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++.+|...+.||+|+||.||++.. .+++.+++|.+...........+.+|+.+++.++|+||+++.++....+..++|+
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            346788889999999999999985 4688999999865433233456789999999999999999999999888999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+. ++|.+++..+
T Consensus        83 e~~~-~~l~~~~~~~   96 (291)
T cd07870          83 EYMH-TDLAQYMIQH   96 (291)
T ss_pred             eccc-CCHHHHHHhC
Confidence            9996 7888877654

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.79  E-value=2.3e-08  Score=98.81  Aligned_cols=91  Identities=20%  Similarity=0.349  Sum_probs=78.8

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh--hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI--RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      +|+..+.||+|++|.||++... .++.+|+|.+......  ...+.+.+|++++..++|+||+++++.+...+..++|||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5677789999999999999865 4889999998754321  245679999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.++++..
T Consensus        82 ~~~~~~L~~~~~~~   95 (316)
T cd05574          82 YCPGGELFRLLQRQ   95 (316)
T ss_pred             ecCCCCHHHHHHhC
Confidence            99999999999854

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=98.79  E-value=8.3e-09  Score=109.12  Aligned_cols=91  Identities=23%  Similarity=0.411  Sum_probs=75.8

Q ss_pred             ccccccceeccCCcceEEEEEEcCC-cEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEE-EeC------C
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDD-TQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLC-LQT------K  459 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~-~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~-~~~------~  459 (491)
                      -++.+.+.|.+|||+.||.+....+ ..+|+|++-..+. ...+...+|+++|++|+ |+|||.+++.. ...      -
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de-~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDE-EALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCH-HHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            3455568899999999999997665 9999999877644 67788999999999996 99999999943 221      2


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +.+|+|||+++|.|-++|..+
T Consensus       116 EvllLmEyC~gg~Lvd~mn~R  136 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTR  136 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHH
Confidence            678999999999999999854

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.79  E-value=2.4e-08  Score=108.80  Aligned_cols=92  Identities=22%  Similarity=0.277  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||+||++... .++.||+|.++...  .....+.+.+|+.++..++|+||+++++.+...+..+|||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            46777899999999999999965 57899999986532  2234567889999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++++|.++|+..
T Consensus        84 Ey~~g~~L~~li~~~   98 (669)
T cd05610          84 EYLIGGDVKSLLHIY   98 (669)
T ss_pred             eCCCCCCHHHHHHhc
Confidence            999999999999754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.78  E-value=1.4e-08  Score=98.45  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHH-HHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGI-VSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...+.||+|+||.||++... +++.||+|.++..........+..|+.+ ++.++|+||+++++.+...+..++++||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            5677788999999999999864 5889999998754322233456667665 5667899999999999999999999999


Q ss_pred             cCCCChhhhhcc
Q 011189          468 VSNGTLFHHIHS  479 (491)
Q Consensus       468 ~~~GsL~~~L~~  479 (491)
                      ++ |+|.++++.
T Consensus        82 ~~-~~l~~~l~~   92 (283)
T cd06617          82 MD-TSLDKFYKK   92 (283)
T ss_pred             hc-ccHHHHHHH
Confidence            97 789888875

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.78  E-value=2.5e-08  Score=99.19  Aligned_cols=87  Identities=23%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             ceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHH-HHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMG-IVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++.. .+++.+|+|.+....  .......+.+|.. +++.++||||+++++.+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3699999999999985 468899999986532  1123355666665 46779999999999999999999999999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|..++....
T Consensus        81 ~~L~~~l~~~~   91 (325)
T cd05604          81 GELFFHLQRER   91 (325)
T ss_pred             CCHHHHHHHcC
Confidence            99999987643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.77  E-value=2.7e-08  Score=94.64  Aligned_cols=91  Identities=25%  Similarity=0.418  Sum_probs=78.6

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~E  466 (491)
                      |+..+.||+|++|.||++... +++.+++|.+..... ....+.+.+|+.++++++|+||+++++.....  +..++++|
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   81 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE   81 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEE
Confidence            566788999999999999975 688999999865431 23467899999999999999999999999888  88999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++++|.+++.+..
T Consensus        82 ~~~~~~L~~~~~~~~   96 (260)
T cd06606          82 YVSGGSLSSLLKKFG   96 (260)
T ss_pred             ecCCCcHHHHHHHcC
Confidence            999999999998653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=98.77  E-value=9.2e-09  Score=98.56  Aligned_cols=91  Identities=26%  Similarity=0.423  Sum_probs=75.6

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCc-cccEEeEEEeCC------c
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKN-VVKILGLCLQTK------V  460 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~------~  460 (491)
                      .|...++||+|.||+||+|+ ...|+.||+|+++...+ ++.....++|+.++.+++|+| ||+|.+++...+      .
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            34445679999999999998 45788999999986643 233466789999999999999 999999998877      7


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||+||+. -+|.+||....
T Consensus        92 l~lvfe~~d-~DL~~ymd~~~  111 (323)
T KOG0594|consen   92 LYLVFEFLD-RDLKKYMDSLP  111 (323)
T ss_pred             EEEEEEeec-ccHHHHHHhcc
Confidence            889999996 59999998754

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=98.77  E-value=7.8e-09  Score=103.68  Aligned_cols=97  Identities=21%  Similarity=0.308  Sum_probs=81.7

Q ss_pred             HHhhccccccceeccCCcceEEEEE-EcCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      ++...+|...+.||+|+|.+|++++ .+.++.+|||.+....  ++...+-..+|-.+|.+| .||.|++|+--+.+...
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            3345677888999999999999998 4568999999987653  222345577899999999 89999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|.|+||+++|+|.++|+..+
T Consensus       149 LYFvLe~A~nGdll~~i~K~G  169 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYG  169 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhC
Confidence            999999999999999999764

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.77  E-value=3.5e-08  Score=94.61  Aligned_cols=84  Identities=24%  Similarity=0.360  Sum_probs=73.0

Q ss_pred             eccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|++|.||++... .++.+++|.+....  .....+.+.+|+.+++.++|+||+++++.+...+..++++||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999974 47899999986543  223457799999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 011189          474 FHHIHSK  480 (491)
Q Consensus       474 ~~~L~~~  480 (491)
                      .++|++.
T Consensus        81 ~~~l~~~   87 (262)
T cd05572          81 WTILRDR   87 (262)
T ss_pred             HHHHhhc
Confidence            9999865

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.77  E-value=2.4e-08  Score=95.36  Aligned_cols=88  Identities=31%  Similarity=0.574  Sum_probs=74.6

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .+|...+.||+|+||.||++.. .++.+|+|.++...   ..+.|.+|+.++++++|+|++++++.+.. +..++++||+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~v~e~~   80 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV---TAQAFLEETAVMTKLHHKNLVRLLGVILH-NGLYIVMELM   80 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc---hHHHHHHHHHHHHhCCCCCcCeEEEEEcC-CCcEEEEECC
Confidence            3567778999999999999986 67889999986542   34678999999999999999999998865 4578999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.++++...
T Consensus        81 ~~~~L~~~l~~~~   93 (254)
T cd05083          81 SKGNLVNFLRTRG   93 (254)
T ss_pred             CCCCHHHHHHhcC
Confidence            9999999998653

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.77  E-value=2.6e-08  Score=98.90  Aligned_cols=91  Identities=19%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      +|...+.||+|+||+||++... .++.+|+|.++...  .....+.+..|..++..+ +|++|+++++++...+..+|||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            3666788999999999999865 46799999987542  112345677888888877 5899999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.+++...
T Consensus        81 E~~~~g~L~~~~~~~   95 (323)
T cd05616          81 EYVNGGDLMYQIQQV   95 (323)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999999998764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=98.76  E-value=2.3e-08  Score=101.46  Aligned_cols=90  Identities=22%  Similarity=0.303  Sum_probs=74.3

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----ccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----VPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~  462 (491)
                      +|+..+.||+|+||.||++.. .+++.||+|++.... .....+++.+|+++++.++|+||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            366778999999999999985 468899999986532 2234567899999999999999999999987765     789


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+. ++|.+++...
T Consensus        81 lv~e~~~-~~l~~~~~~~   97 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSP   97 (372)
T ss_pred             EEeeccc-cCHHHHHhcC
Confidence            9999996 6888888654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.75  E-value=3.2e-08  Score=96.09  Aligned_cols=90  Identities=22%  Similarity=0.287  Sum_probs=77.4

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |+..+.||+|++|.||++... +++.+++|.+..... ....+.+.+|+.++++++|+|++++++.+...+..++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc
Confidence            566788999999999999864 688999999875432 234577999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                       +++|.++++...
T Consensus        82 -~~~L~~~~~~~~   93 (286)
T cd07832          82 -PSDLSEVLRDEE   93 (286)
T ss_pred             -CCCHHHHHHhcC
Confidence             999999997643

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=98.75  E-value=2.8e-08  Score=99.15  Aligned_cols=90  Identities=20%  Similarity=0.409  Sum_probs=72.6

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----ccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----VPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~  462 (491)
                      +|...+.||+|+||.||++... ++..||+|++.... .......+.+|+.++++++||||+++++++....     ..+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            3566788999999999999854 67899999986432 2133467899999999999999999999886432     478


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +||||+. ++|.++|...
T Consensus        81 lv~e~~~-~~L~~~l~~~   97 (338)
T cd07859          81 VVFELME-SDLHQVIKAN   97 (338)
T ss_pred             EEEecCC-CCHHHHHHhc
Confidence            9999995 6899998764

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=98.75  E-value=1.8e-09  Score=100.51  Aligned_cols=89  Identities=27%  Similarity=0.397  Sum_probs=79.1

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      -|....+||+|+||.|||+.++ .|+.+|+|++....   ..++.+.|+.+|.+.+.++||+++|.+.....+||||||+
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s---DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT---DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc---hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            3555678999999999999864 68999999987654   4688999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      -.|++.+.++-++
T Consensus       111 GAGSiSDI~R~R~  123 (502)
T KOG0574|consen  111 GAGSISDIMRARR  123 (502)
T ss_pred             CCCcHHHHHHHhc
Confidence            9999999998664

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=1.3e-08  Score=104.79  Aligned_cols=93  Identities=26%  Similarity=0.415  Sum_probs=78.9

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  462 (491)
                      ..++|...++||+|.||+|+.+.++ +++.+|||.+++..  ...+++..+.|.+|+.-. +||.+++|+.++...+.++
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~  445 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF  445 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence            3467888899999999999999975 56799999998753  224567888999998877 5999999999999999999


Q ss_pred             EEEeccCCCChhhhhcc
Q 011189          463 LVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~  479 (491)
                      .||||..||||..+++.
T Consensus       446 fvmey~~Ggdm~~~~~~  462 (694)
T KOG0694|consen  446 FVMEYVAGGDLMHHIHT  462 (694)
T ss_pred             EEEEecCCCcEEEEEec
Confidence            99999999997766664

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.75  E-value=3.4e-08  Score=98.15  Aligned_cols=87  Identities=18%  Similarity=0.322  Sum_probs=69.1

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHH-HHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEM-GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~-~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||+||++... +++.+|+|.+.....  ......+.+|. .+++.++|+||+++++.+...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36999999999999864 567899999865321  12233445554 456789999999999999999999999999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|.++++...
T Consensus        81 ~~L~~~~~~~~   91 (325)
T cd05602          81 GELFYHLQRER   91 (325)
T ss_pred             CcHHHHHHhcC
Confidence            99999998643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.75  E-value=1.9e-08  Score=96.14  Aligned_cols=88  Identities=28%  Similarity=0.478  Sum_probs=74.9

Q ss_pred             ccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhh-HHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIR-VSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |+..+.||+|+||+||++.... ++.+|+|.+....... ......+|+.++.+++|+||+++++.....+..++|+||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            4456889999999999999754 5689999988765322 2234567999999999999999999999999999999999


Q ss_pred             CCCChhhhhc
Q 011189          469 SNGTLFHHIH  478 (491)
Q Consensus       469 ~~GsL~~~L~  478 (491)
                      ++++|.++|.
T Consensus        81 ~~~~L~~~l~   90 (260)
T PF00069_consen   81 PGGSLQDYLQ   90 (260)
T ss_dssp             TTEBHHHHHH
T ss_pred             cccccccccc
Confidence            9999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.74  E-value=3.5e-08  Score=95.58  Aligned_cols=85  Identities=25%  Similarity=0.293  Sum_probs=71.8

Q ss_pred             eccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|+||+||++.. .+++.+|+|.+....  .....+.+.+|+++++.++||||+++++.+...+..++|+||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999975 468899999886432  112345678999999999999999999999998999999999999999


Q ss_pred             hhhhccCC
Q 011189          474 FHHIHSKS  481 (491)
Q Consensus       474 ~~~L~~~~  481 (491)
                      .++|....
T Consensus        81 ~~~l~~~~   88 (277)
T cd05577          81 KYHIYNVG   88 (277)
T ss_pred             HHHHHHcC
Confidence            99998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.74  E-value=5.7e-08  Score=93.42  Aligned_cols=91  Identities=19%  Similarity=0.403  Sum_probs=75.2

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccc----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~  462 (491)
                      +|...+.||+|+||.||++.. ..++.+++|.+....    .....+.+.+|+.++++++|+||+++++.+...  ...+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            577788999999999999985 457899999875432    113346789999999999999999999988653  5678


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +++||+++++|.++|+..
T Consensus        83 l~~e~~~~~~L~~~l~~~  100 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAY  100 (266)
T ss_pred             EEEeCCCCCcHHHHHHHc
Confidence            999999999999999764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.74  E-value=5.4e-08  Score=93.49  Aligned_cols=92  Identities=20%  Similarity=0.379  Sum_probs=75.7

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEecccc----chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--Ccc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA----DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~----~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  461 (491)
                      .+|...+.||+|+||.||++.. .+++.+|+|.+...    ........|.+|++++++++|+||++++++....  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            3577788999999999999985 45889999987432    1223456799999999999999999999998664  357


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||+++++|.+++.+.
T Consensus        82 ~~v~e~~~~~~L~~~~~~~  100 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAY  100 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHc
Confidence            8999999999999999764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.74  E-value=3.5e-08  Score=97.76  Aligned_cols=86  Identities=23%  Similarity=0.293  Sum_probs=71.2

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||.||++... .+..||+|.++....  ....+.+..|..++..+ +||||+++++.+...+..+|||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            36999999999999865 578999999875421  12345677788888754 899999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.+++..+
T Consensus        81 g~L~~~i~~~   90 (316)
T cd05620          81 GDLMFHIQDK   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.73  E-value=3.5e-08  Score=97.06  Aligned_cols=92  Identities=29%  Similarity=0.605  Sum_probs=74.4

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .+|+..+.||+|+||.||++... ++.    .+|+|.+..........++.+|+.+++.++||||+++++.+... ...+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            34566688999999999999853 343    57889887654434456799999999999999999999988654 4679


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||+++|+|.++++.+.
T Consensus        86 v~e~~~~g~l~~~~~~~~  103 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHK  103 (303)
T ss_pred             eehhcCCCCHHHHHHhcc
Confidence            999999999999998653

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.73  E-value=4.5e-08  Score=97.73  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=67.6

Q ss_pred             HhhccccccceeccCCcceEEEEEEc--CCcEEEEEecccc----chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS--DDTQVAVKKPKEA----DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK  459 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~--~~~~vavK~l~~~----~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  459 (491)
                      ...++|...+.||+|+||+||++..+  +++.+|||++...    ......+.|.+|+++|.+++|+|++..+..   .+
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~   91 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TG   91 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cC
Confidence            34567888999999999999999864  4677899986532    122345679999999999999999863322   25


Q ss_pred             ccEEEEeccCCCChhh
Q 011189          460 VPLLVYEFVSNGTLFH  475 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~  475 (491)
                      ..+|||||+++++|..
T Consensus        92 ~~~LVmE~~~G~~L~~  107 (365)
T PRK09188         92 KDGLVRGWTEGVPLHL  107 (365)
T ss_pred             CcEEEEEccCCCCHHH
Confidence            6799999999999973

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.73  E-value=2.3e-08  Score=105.20  Aligned_cols=96  Identities=24%  Similarity=0.242  Sum_probs=78.0

Q ss_pred             HHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC---
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK---  459 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---  459 (491)
                      ....++|...+.||+|+||+||++.. .+++.||+|.+.... .......+.+|+.++..++|+|++++...+...+   
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~  107 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN  107 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence            34456888899999999999999984 468999999986542 2244567899999999999999999887765432   


Q ss_pred             -----ccEEEEeccCCCChhhhhccC
Q 011189          460 -----VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 -----~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                           ..++||||+++|+|.++|+.+
T Consensus       108 ~~~~~~i~lV~Ey~~~gsL~~~l~~~  133 (496)
T PTZ00283        108 PENVLMIALVLDYANAGDLRQEIKSR  133 (496)
T ss_pred             cccceEEEEEEeCCCCCcHHHHHHHh
Confidence                 257999999999999999764

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.73  E-value=3.9e-08  Score=94.66  Aligned_cols=93  Identities=23%  Similarity=0.408  Sum_probs=78.5

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC----
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK----  459 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~----  459 (491)
                      .++++|+..+.||+|++|.||++... .++.+++|.+.....  ..+.|.+|+.+++++ +|+||+++++.+....    
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED--EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch--hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            35678888999999999999999974 567899998876543  346789999999999 7999999999997654    


Q ss_pred             --ccEEEEeccCCCChhhhhccC
Q 011189          460 --VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 --~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                        ..++||||+++++|.++++..
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~  103 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGL  103 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHH
Confidence              478999999999999998753

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.73  E-value=1.1e-08  Score=101.89  Aligned_cols=91  Identities=23%  Similarity=0.304  Sum_probs=77.4

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|.|+.|-.+++ -.|..||||.+..... ......+.+|++.|+-++|||||+|+.+...+..+|||+|.-
T Consensus        20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELG   99 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELG   99 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEec
Confidence            44556799999999988873 3789999999977642 234466889999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      .+|+|++||-.+.
T Consensus       100 D~GDl~DyImKHe  112 (864)
T KOG4717|consen  100 DGGDLFDYIMKHE  112 (864)
T ss_pred             CCchHHHHHHhhh
Confidence            9999999997653

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.73  E-value=3.1e-08  Score=96.08  Aligned_cols=100  Identities=19%  Similarity=0.397  Sum_probs=81.1

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ  457 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  457 (491)
                      +..++..+...|+..+.||+|+||.||++.. ..++.+|+|.+.....  ...++..|+.++.++ +|+||+++++.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~--~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTED--EEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChH--HHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            4455566677888889999999999999986 4578899998765432  346688999999998 79999999999853


Q ss_pred             ------CCccEEEEeccCCCChhhhhccCC
Q 011189          458 ------TKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       458 ------~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                            .+..+++|||+++|+|.+++....
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~  114 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTK  114 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHcc
Confidence                  346789999999999999997643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.73  E-value=5e-08  Score=93.92  Aligned_cols=89  Identities=22%  Similarity=0.414  Sum_probs=73.5

Q ss_pred             ccccceeccCCcceEEEEEEcC--CcEEEEEeccccc---------hhhHHHHHHHHHHHHHc-CCCCccccEEeEEEeC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSD--DTQVAVKKPKEAD---------KIRVSQEFQHEMGIVSQ-INHKNVVKILGLCLQT  458 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~--~~~vavK~l~~~~---------~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~  458 (491)
                      |+..+.||+|+||.||++....  ++.+|+|.+....         ......++.+|+.++.+ ++|+||+++++.+...
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   81 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEN   81 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccC
Confidence            5666889999999999999754  6789999875321         11344668889988875 7999999999999999


Q ss_pred             CccEEEEeccCCCChhhhhcc
Q 011189          459 KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      +..++++||+++++|.+++..
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~  102 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFNS  102 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHHH
Confidence            999999999999999998854

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.72  E-value=5.1e-08  Score=95.05  Aligned_cols=90  Identities=19%  Similarity=0.344  Sum_probs=75.5

Q ss_pred             ccccceeccCCcceEEEEEE----cCCcEEEEEeccccch---hhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccE
Q 011189          391 YDKSNFLGEGGFGSVYRGVL----SDDTQVAVKKPKEADK---IRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  462 (491)
                      |+..+.||+|+||.||++..    .+++.+|+|.++....   ....+.+.+|+.++.++ +|+||+++++++......+
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            56678899999999999875    3678999999865321   12346788999999999 5999999999998888899


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+++++|.++|...
T Consensus        82 lv~e~~~~~~L~~~l~~~   99 (290)
T cd05613          82 LILDYINGGELFTHLSQR   99 (290)
T ss_pred             EEEecCCCCcHHHHHHHc
Confidence            999999999999999764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.71  E-value=3.2e-08  Score=97.49  Aligned_cols=91  Identities=24%  Similarity=0.352  Sum_probs=75.8

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..|...+.||+|+||+||++... +++.||+|.+....  .....+++.+|+++++.++||||+++.+++...+..++|+
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            45777788999999999999864 57899999876432  2234467899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||++ |+|.+++...
T Consensus        95 e~~~-g~l~~~~~~~  108 (307)
T cd06607          95 EYCL-GSASDILEVH  108 (307)
T ss_pred             HhhC-CCHHHHHHHc
Confidence            9997 6788877643

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.71  E-value=3.1e-08  Score=97.16  Aligned_cols=86  Identities=24%  Similarity=0.278  Sum_probs=74.1

Q ss_pred             cceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          394 SNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      ...||+|+||.||++... +++.+|+|.+..... ...+.+.+|+.++..++||||+++++.+...+..++++||+++++
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~  104 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ-QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGA  104 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc-chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCC
Confidence            356999999999999853 688999999865433 345678899999999999999999999999999999999999999


Q ss_pred             hhhhhccC
Q 011189          473 LFHHIHSK  480 (491)
Q Consensus       473 L~~~L~~~  480 (491)
                      |.+++...
T Consensus       105 L~~~~~~~  112 (297)
T cd06659         105 LTDIVSQT  112 (297)
T ss_pred             HHHHHhhc
Confidence            99988653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.71  E-value=2.7e-08  Score=96.54  Aligned_cols=91  Identities=27%  Similarity=0.462  Sum_probs=76.0

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|++|.||++... +++.+++|.++.... ......+.+|++++++++||||+++++.+...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            3667788999999999999864 678999998865432 12346789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ ++|.++++...
T Consensus        81 ~~-~~l~~~~~~~~   93 (284)
T cd07860          81 LH-QDLKKFMDASP   93 (284)
T ss_pred             cc-cCHHHHHHhCC
Confidence            96 68999987643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.71  E-value=6.5e-08  Score=91.53  Aligned_cols=89  Identities=30%  Similarity=0.499  Sum_probs=78.6

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |...+.||+|++|.||++... ++..+++|++..... ...+.+.+|++++++++|+|++++++.+...+..++++||++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            556688999999999999975 678899999876543 356789999999999999999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +++|.+++...
T Consensus        81 ~~~L~~~~~~~   91 (253)
T cd05122          81 GGSLKDLLKST   91 (253)
T ss_pred             CCcHHHHHhhc
Confidence            99999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.71  E-value=5.7e-08  Score=95.04  Aligned_cols=85  Identities=27%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             ceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          395 NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ..||+|+||.||++.. .++..+|+|++..... .....+.+|+.+++.++|+|++++++.+...+..+++|||+++++|
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccch-hHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            5699999999999986 4678999998865433 3456799999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 011189          474 FHHIHSK  480 (491)
Q Consensus       474 ~~~L~~~  480 (491)
                      .+++...
T Consensus       105 ~~~~~~~  111 (292)
T cd06657         105 TDIVTHT  111 (292)
T ss_pred             HHHHhcC
Confidence            9988643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.70  E-value=3e-08  Score=97.00  Aligned_cols=86  Identities=27%  Similarity=0.305  Sum_probs=74.2

Q ss_pred             cceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          394 SNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      ...||+|+||.||++... ++..+|+|.+..... ...+.+.+|+.+++.++|+||+++++.+...+..++|+||+++++
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~  105 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQ-QRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGA  105 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchH-HHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCc
Confidence            356999999999999853 578999999865433 345679999999999999999999999999999999999999999


Q ss_pred             hhhhhccC
Q 011189          473 LFHHIHSK  480 (491)
Q Consensus       473 L~~~L~~~  480 (491)
                      |.+++...
T Consensus       106 L~~~~~~~  113 (292)
T cd06658         106 LTDIVTHT  113 (292)
T ss_pred             HHHHHhcC
Confidence            99988643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.70  E-value=6.2e-08  Score=92.09  Aligned_cols=90  Identities=24%  Similarity=0.461  Sum_probs=77.9

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|++|.||++... .++.+++|.+..... ....+.+.+|++++++++|+|++++++.....+..++++||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYA   81 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecC
Confidence            566788999999999999864 578899999876532 134578999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++++|.+++...
T Consensus        82 ~~~~L~~~~~~~   93 (254)
T cd06627          82 ENGSLRQIIKKF   93 (254)
T ss_pred             CCCcHHHHHHhc
Confidence            999999999765

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.70  E-value=5.3e-08  Score=99.39  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=72.8

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .+|...+.||+|+||.||++.. ..++.||+|...       ...+.+|+.++++++|||||++++++...+..++|+|+
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            4688889999999999999985 467899999643       24467999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +. ++|.+++...
T Consensus       165 ~~-~~L~~~l~~~  176 (391)
T PHA03212        165 YK-TDLYCYLAAK  176 (391)
T ss_pred             CC-CCHHHHHHhc
Confidence            95 7899988765

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.70  E-value=7e-09  Score=104.71  Aligned_cols=88  Identities=25%  Similarity=0.398  Sum_probs=73.4

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccchh--hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKI--RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      -|...+.||.|+||.||-+. .++...||||++.-..+.  ...++.+.|+..|.+++|||++.+.||++.....|||||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            35556889999999999998 456789999998765431  335779999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhc
Q 011189          467 FVSNGTLFHHIH  478 (491)
Q Consensus       467 y~~~GsL~~~L~  478 (491)
                      |+- |+-.++|.
T Consensus       107 YCl-GSAsDlle  117 (948)
T KOG0577|consen  107 YCL-GSASDLLE  117 (948)
T ss_pred             HHh-ccHHHHHH
Confidence            994 56666654

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.69  E-value=3.2e-08  Score=103.12  Aligned_cols=92  Identities=23%  Similarity=0.380  Sum_probs=68.3

Q ss_pred             hccccccceeccCCcceEEEEEE-----------------cCCcEEEEEeccccchhhHHH--------------HHHHH
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-----------------SDDTQVAVKKPKEADKIRVSQ--------------EFQHE  436 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-----------------~~~~~vavK~l~~~~~~~~~~--------------~f~~E  436 (491)
                      .++|...++||+|+||.||+|.+                 ..++.||||++..... ...+              .+..|
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~-~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQ-GVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccch-hhHHHHHhhhhhhhcccchhHHH
Confidence            56788889999999999999964                 2346799999865432 1222              34457


Q ss_pred             HHHHHcCCCCcc-----ccEEeEEEe--------CCccEEEEeccCCCChhhhhccC
Q 011189          437 MGIVSQINHKNV-----VKILGLCLQ--------TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       437 ~~~l~~l~H~ni-----v~l~g~~~~--------~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +.++.+++|.++     +++++++..        .+..+|||||+++|+|.++|+..
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~  279 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGK  279 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhc
Confidence            777777776654     677777653        35689999999999999999864

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=3e-08  Score=98.99  Aligned_cols=86  Identities=24%  Similarity=0.415  Sum_probs=72.9

Q ss_pred             cceeccCCcceEEEEEE-cCCcEEEEEeccccchh-hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          394 SNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      .++||.|.||+||.|+. +.|+.||||.+.+..-+ .....+.+|+.||.+++||.||.|.--+...+..++|||-+ +|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl-~G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL-HG  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh-cc
Confidence            47899999999999985 47999999998764311 23467889999999999999999999999999999999999 57


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      |+.+.|-+.
T Consensus       648 DMLEMILSs  656 (888)
T KOG4236|consen  648 DMLEMILSS  656 (888)
T ss_pred             hHHHHHHHh
Confidence            888877654

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.69  E-value=4.7e-08  Score=93.26  Aligned_cols=91  Identities=23%  Similarity=0.354  Sum_probs=74.7

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-ccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-VPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~E  466 (491)
                      +|+..+.||+|++|.||++... +++.+++|++.... .....+.+.+|+.++++++|+|++++++.+...+ ..++++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            3667789999999999999854 56889999986532 2234567899999999999999999998876444 5789999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.++++..
T Consensus        81 ~~~~~~l~~~l~~~   94 (257)
T cd08223          81 FCEGGDLYHKLKEQ   94 (257)
T ss_pred             ccCCCcHHHHHHHh
Confidence            99999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.68  E-value=7e-08  Score=92.28  Aligned_cols=90  Identities=22%  Similarity=0.388  Sum_probs=74.3

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~E  466 (491)
                      |+..+.||.|+||.||++.. .+++.+++|.+.... .....+.+.+|+.++++++|+||+++++.+..  ....++++|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e   81 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVME   81 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEeh
Confidence            56668899999999999985 467889999886532 22445779999999999999999999998764  346789999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.+++++.
T Consensus        82 ~~~~~~L~~~l~~~   95 (265)
T cd08217          82 YCEGGDLAQLIQKC   95 (265)
T ss_pred             hccCCCHHHHHHHH
Confidence            99999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.68  E-value=8.8e-08  Score=91.09  Aligned_cols=91  Identities=22%  Similarity=0.367  Sum_probs=78.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|...+.||+|++|.||++... ++..+++|.+..... ....+++.+|++++++++|+|++++++.....+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3566788999999999999964 578999999875432 24557789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.+++++.
T Consensus        81 ~~~~~L~~~l~~~   93 (258)
T cd08215          81 ADGGDLSQKIKKQ   93 (258)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.67  E-value=5.5e-08  Score=94.18  Aligned_cols=90  Identities=20%  Similarity=0.316  Sum_probs=71.8

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeC--CccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQT--KVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv~E  466 (491)
                      |+..+.||+|+||.||++.. .+++.+|+|.++............+|+.++.++. |+|++++++.+...  +..++|+|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            34567899999999999985 4678999999875432223344568999999885 99999999999887  78999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |++ |+|.+++....
T Consensus        81 ~~~-~~l~~~l~~~~   94 (282)
T cd07831          81 LMD-MNLYELIKGRK   94 (282)
T ss_pred             cCC-ccHHHHHHhcc
Confidence            997 68999887643

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.67  E-value=8.1e-08  Score=93.85  Aligned_cols=91  Identities=25%  Similarity=0.464  Sum_probs=76.0

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|+..+.||+|++|.||++... +++.+++|.+..... ....+.+.+|+.++++++|+||+++++.+...+..++|+|
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            35777789999999999999864 678999999865432 1234678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |++ ++|.+++...
T Consensus        82 ~~~-~~l~~~~~~~   94 (294)
T PLN00009         82 YLD-LDLKKHMDSS   94 (294)
T ss_pred             ccc-ccHHHHHHhC
Confidence            996 5888888654

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.67  E-value=5.3e-08  Score=94.60  Aligned_cols=90  Identities=27%  Similarity=0.367  Sum_probs=75.4

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|++|.||++... +++.|++|.++... .....+.+.+|++++++++|+||+++++.+...+..++++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            5677789999999999999865 57899999886542 223457799999999999999999999999999999999999


Q ss_pred             cCCCChhhhhcc
Q 011189          468 VSNGTLFHHIHS  479 (491)
Q Consensus       468 ~~~GsL~~~L~~  479 (491)
                      ++++.|..+++.
T Consensus        82 ~~~~~l~~~~~~   93 (288)
T cd07833          82 VERTLLELLEAS   93 (288)
T ss_pred             CCCCHHHHHHhc
Confidence            998777665554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.67  E-value=7.4e-08  Score=95.37  Aligned_cols=89  Identities=24%  Similarity=0.361  Sum_probs=74.1

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |...+.||+|+||.||++.. .++..+|+|.+....  .......+.+|++++++++|+|++++++++...+..+||+||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            55667899999999999985 467899999886432  223446789999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      ++ |+|.+++...
T Consensus       107 ~~-g~l~~~~~~~  118 (317)
T cd06635         107 CL-GSASDLLEVH  118 (317)
T ss_pred             CC-CCHHHHHHHh
Confidence            97 5888887654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.67  E-value=5e-09  Score=98.22  Aligned_cols=93  Identities=25%  Similarity=0.478  Sum_probs=76.4

Q ss_pred             hccccccceeccCCcceEEEEEEc---C--CcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS---D--DTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~---~--~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~  460 (491)
                      ...|+....||+|.||.|||+.-.   +  ...+|+|+++...+ .+......+|+.++++++|+||+.|..+++. +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            345777788999999999999642   2  23789999876532 2345778999999999999999999999988 778


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|++||.++ ||.+.|+-++
T Consensus       103 v~l~fdYAEh-DL~~II~fHr  122 (438)
T KOG0666|consen  103 VWLLFDYAEH-DLWHIIKFHR  122 (438)
T ss_pred             EEEEehhhhh-hHHHHHHHhc
Confidence            9999999986 9999998654

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.67  E-value=1e-07  Score=92.75  Aligned_cols=88  Identities=27%  Similarity=0.315  Sum_probs=75.5

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |...+.||+|++|.||++.. .+++.+++|.+..... ...+.+.+|+.+++.++|+||+++++.+...+..++++||++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccch-hHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            33446899999999999985 4678999998865433 345678999999999999999999999999999999999999


Q ss_pred             CCChhhhhcc
Q 011189          470 NGTLFHHIHS  479 (491)
Q Consensus       470 ~GsL~~~L~~  479 (491)
                      +++|.+++..
T Consensus       100 ~~~L~~~~~~  109 (285)
T cd06648         100 GGALTDIVTH  109 (285)
T ss_pred             CCCHHHHHHh
Confidence            9999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.66  E-value=4.8e-08  Score=95.39  Aligned_cols=90  Identities=22%  Similarity=0.388  Sum_probs=73.3

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCc-----c
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKV-----P  461 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~-----~  461 (491)
                      +|+..+.||+|+||.||++... +++.||+|.++.... ......+.+|+.+++.++ |+||++++++....+.     .
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            5777789999999999999864 678999998765432 123467889999999995 6999999999877665     7


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++ +|.+++...
T Consensus        82 ~lv~e~~~~-~l~~~~~~~   99 (295)
T cd07837          82 YLVFEYLDS-DLKKFMDSN   99 (295)
T ss_pred             EEEeeccCc-CHHHHHHHh
Confidence            999999985 899998764

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.66  E-value=4.2e-08  Score=94.75  Aligned_cols=92  Identities=20%  Similarity=0.350  Sum_probs=78.3

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~  465 (491)
                      +|...+.||+|++|.||++... +++.+++|.+....  .....+.+.+|+.++.+++ |+||+++++.+...+..++||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            5677788999999999999864 68899999886532  2233467889999999998 999999999999889999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++++|.++++..+
T Consensus        82 e~~~~~~L~~~l~~~~   97 (280)
T cd05581          82 EYAPNGELLQYIRKYG   97 (280)
T ss_pred             cCCCCCcHHHHHHHcC
Confidence            9999999999998653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.65  E-value=8.1e-09  Score=94.02  Aligned_cols=91  Identities=26%  Similarity=0.338  Sum_probs=79.2

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----CccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~~  462 (491)
                      ++|...+.||+|||..|+.++ +.+++.+|+|++..... ++.+..++|++..++++||||++++......     ...|
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~-~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQ-EDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccch-HHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            567778899999999999998 67889999999877664 5678899999999999999999998887543     3589


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      |++.|...|+|.+.|...
T Consensus       100 ll~Pyy~~Gsl~d~i~~~  117 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERL  117 (302)
T ss_pred             EEeehhccccHHHHHHHH
Confidence            999999999999999864

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.65  E-value=3e-08  Score=96.15  Aligned_cols=90  Identities=27%  Similarity=0.405  Sum_probs=74.3

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |+..+.||+|++|.||+|... .++.+++|++.............+|+..+.+++ |+|++++++.+...+..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            345678999999999999975 478899999865433223344567999999999 999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                       +|+|.++++...
T Consensus        81 -~~~l~~~~~~~~   92 (283)
T cd07830          81 -EGNLYQLMKDRK   92 (283)
T ss_pred             -CCCHHHHHHhcc
Confidence             889999998754

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.65  E-value=1e-07  Score=94.89  Aligned_cols=85  Identities=16%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             eeccC--CcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          396 FLGEG--GFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       396 ~lG~G--~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      .||+|  +|++||++.. ..++.||+|.+.... .....+.+.+|+.++..++||||+++++++...+..++|+||+++|
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~   84 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYG   84 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCC
Confidence            46666  8999999986 468999999986543 2234578899999999999999999999999999999999999999


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      +|.+++++.
T Consensus        85 ~l~~~l~~~   93 (328)
T cd08226          85 SANSLLKTY   93 (328)
T ss_pred             CHHHHHHhh
Confidence            999999865

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.64  E-value=9.1e-08  Score=93.24  Aligned_cols=90  Identities=22%  Similarity=0.389  Sum_probs=69.2

Q ss_pred             cccccceeccCCcceEEEEEEc--CCcEEEEEeccccch-hhHHHHHHHHHHHHHcC---CCCccccEEeEEEe-----C
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS--DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQI---NHKNVVKILGLCLQ-----T  458 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~--~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~-----~  458 (491)
                      +|...+.||+|+||.||++...  .++.||+|.++.... ......+.+|+.++..+   +||||+++++++..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            5777789999999999999852  467899998865432 12234567788777765   69999999998853     3


Q ss_pred             CccEEEEeccCCCChhhhhccC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ...++|+||++ ++|.+++...
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~  102 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKV  102 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhC
Confidence            46789999996 6999999764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.64  E-value=7.9e-08  Score=95.75  Aligned_cols=96  Identities=19%  Similarity=0.297  Sum_probs=77.8

Q ss_pred             HHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCc
Q 011189          384 LIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKV  460 (491)
Q Consensus       384 l~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~  460 (491)
                      +...+++|...+.||+|+||.||++.. .+++.+|+|++.... .....+.+.+|+.++.+++||||+++++++.. .+.
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            345677898899999999999999984 478899999875432 21334678899999999999999999998876 457


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++++||+ +++|.++++..
T Consensus        85 ~~lv~e~~-~~~L~~~~~~~  103 (328)
T cd07856          85 IYFVTELL-GTDLHRLLTSR  103 (328)
T ss_pred             EEEEeehh-ccCHHHHHhcC
Confidence            88999998 56898888753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.64  E-value=1.4e-07  Score=90.85  Aligned_cols=89  Identities=29%  Similarity=0.536  Sum_probs=71.2

Q ss_pred             ccccceeccCCcceEEEEEEc----CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      |...+.||+|+||.||++.+.    .++.+|+|.+.... .....+++.+|+.++++++||||+++++.....+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            345678999999999999853    35789999886542 2234577999999999999999999999886532      


Q ss_pred             ccEEEEeccCCCChhhhhcc
Q 011189          460 VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .+++++||+++|+|.+++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~  100 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLM  100 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHH
Confidence            34789999999999998864

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.63  E-value=6.9e-08  Score=92.29  Aligned_cols=85  Identities=25%  Similarity=0.294  Sum_probs=73.1

Q ss_pred             eccCCcceEEEEEEcC-CcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVLSD-DTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|+||.||++.... ++.+++|.+.....  ....+.+.+|+.++.+++|+||+++++.....+..++++||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            6899999999999764 88999999865432  13457799999999999999999999999988999999999999999


Q ss_pred             hhhhccCC
Q 011189          474 FHHIHSKS  481 (491)
Q Consensus       474 ~~~L~~~~  481 (491)
                      .+++++..
T Consensus        81 ~~~l~~~~   88 (265)
T cd05579          81 ASLLENVG   88 (265)
T ss_pred             HHHHHHcC
Confidence            99998643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.63  E-value=4.4e-08  Score=100.65  Aligned_cols=90  Identities=26%  Similarity=0.432  Sum_probs=77.9

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-C-----CccccEEeEEEeCCccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-H-----KNVVKILGLCLQTKVPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H-----~niv~l~g~~~~~~~~~  462 (491)
                      +|...++||+|.||+|.|+. ...++.||||+++....  ...+-..|+.+|..|+ |     -|+|++++++..+++.+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~--f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlc  264 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR--FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLC  264 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH--HHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccccee
Confidence            67888999999999999998 45689999999987653  4466678999999987 3     59999999999999999


Q ss_pred             EEEeccCCCChhhhhccCCC
Q 011189          463 LVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~~  482 (491)
                      ||+|.+. -+|.++|+.++-
T Consensus       265 iVfELL~-~NLYellK~n~f  283 (586)
T KOG0667|consen  265 IVFELLS-TNLYELLKNNKF  283 (586)
T ss_pred             eeehhhh-hhHHHHHHhcCC
Confidence            9999996 599999998754

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.63  E-value=5.7e-08  Score=92.53  Aligned_cols=90  Identities=23%  Similarity=0.371  Sum_probs=77.0

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +|+..+.||+|++|.||++... +++.+++|.+.... ......++.+|+.++++++|+||+++++.+......++|+||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            3566788999999999999754 67889999986542 224457788999999999999999999999998999999999


Q ss_pred             cCCCChhhhhcc
Q 011189          468 VSNGTLFHHIHS  479 (491)
Q Consensus       468 ~~~GsL~~~L~~  479 (491)
                      +++++|.+++.+
T Consensus        81 ~~~~~L~~~~~~   92 (256)
T cd08530          81 APFGDLSKAISK   92 (256)
T ss_pred             cCCCCHHHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.63  E-value=1.3e-07  Score=93.21  Aligned_cols=89  Identities=26%  Similarity=0.501  Sum_probs=73.0

Q ss_pred             ccccceeccCCcceEEEEEEc---CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS---DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLL  463 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  463 (491)
                      |...+.||+|++|.||++...   .++.+|+|.+....  .....+.+.+|+.++.+++||||+++++.+...  +..++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            566788999999999999964   47899999987632  112346788999999999999999999999887  78999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      |+||++ ++|.+++...
T Consensus        82 v~e~~~-~~l~~~~~~~   97 (316)
T cd07842          82 LFDYAE-HDLWQIIKFH   97 (316)
T ss_pred             EEeCCC-cCHHHHHHhh
Confidence            999997 4788777643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.62  E-value=7.6e-08  Score=99.99  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..+|...+.||+|+||.||++... .++.||+|....       ..+.+|+.++++++|+|||++++++...+..+||||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e  240 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY-------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLP  240 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc-------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEE
Confidence            346788889999999999999864 468899996322       346789999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCCCCcccccc
Q 011189          467 FVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ++. ++|.++|.....  .++|.
T Consensus       241 ~~~-~~L~~~l~~~~~--~l~~~  260 (461)
T PHA03211        241 KYR-SDLYTYLGARLR--PLGLA  260 (461)
T ss_pred             ccC-CCHHHHHHhcCC--CCCHH
Confidence            995 799999876432  35553

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.61  E-value=9.9e-08  Score=92.90  Aligned_cols=90  Identities=20%  Similarity=0.337  Sum_probs=74.8

Q ss_pred             ccccceeccCCcceEEEEEE----cCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccE
Q 011189          391 YDKSNFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  462 (491)
                      |...+.||+|++|.||++..    .+++.+|+|.++...   .....+.+.+|+.++.++ +|+||+++++.....+..+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            55668899999999999874    356789999886432   123346788999999999 5999999999998888999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+++|+|.+++..+
T Consensus        82 lv~e~~~~~~L~~~~~~~   99 (288)
T cd05583          82 LILDYVNGGELFTHLYQR   99 (288)
T ss_pred             EEEecCCCCcHHHHHhhc
Confidence            999999999999998754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.61  E-value=8.3e-08  Score=101.35  Aligned_cols=105  Identities=19%  Similarity=0.359  Sum_probs=83.2

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe--
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ--  457 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~--  457 (491)
                      +.+...++.|.+.++||+|.+|.||+++ .++++.+|+|++....+  ..++...|..+++.. +|||++.++|++..  
T Consensus        12 ~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d--~deEiE~eynil~~~~~hpnv~~fyg~~~k~~   89 (953)
T KOG0587|consen   12 SSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED--EEEEIELEYNMLKKYSHHPNVATFYGAFIKKD   89 (953)
T ss_pred             hhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc--ccHHHHHHHHHHHhccCCCCcceEEEEEEEec
Confidence            3344456778888999999999999998 56788999999876543  224556788888877 69999999999864  


Q ss_pred             ---CCccEEEEeccCCCChhhhhccCCCCcccccc
Q 011189          458 ---TKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       458 ---~~~~~lv~Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                         ++++||||||+.+|+..++++.-. ...+.|+
T Consensus        90 ~~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~  123 (953)
T KOG0587|consen   90 PGNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEE  123 (953)
T ss_pred             CCCCCeEEEEeeccCCccHHHHHhhhc-ccchhhH
Confidence               468999999999999999998754 3456664

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.61  E-value=1.3e-07  Score=91.66  Aligned_cols=89  Identities=24%  Similarity=0.412  Sum_probs=74.8

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEEEe
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLVYE  466 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~E  466 (491)
                      |+..+.||+|++|.||++... .++.+|+|.+.... .....+.+.+|+.++++++|+|++++++.+...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            345678999999999999865 47899999987653 223456788999999999999999999999887  78999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |++ ++|.+++.+.
T Consensus        81 ~~~-~~l~~~~~~~   93 (287)
T cd07840          81 YMD-HDLTGLLDSP   93 (287)
T ss_pred             ccc-ccHHHHHhcc
Confidence            997 4899988765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.61  E-value=1.1e-08  Score=99.99  Aligned_cols=93  Identities=25%  Similarity=0.360  Sum_probs=75.9

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEecccc------chhhHHHHHHHHHHHHHcCCCCccccEEeEEE-eCCc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEA------DKIRVSQEFQHEMGIVSQINHKNVVKILGLCL-QTKV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~------~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~-~~~~  460 (491)
                      ++|...++||+|||..|||+. +...+.||+|+-...      .+....+...+|.+|.+.|.||.||++++++. +.+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            456677889999999999997 556788999974321      12223456889999999999999999999985 5678


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+-|+||+++.+|.-||+.++
T Consensus       543 FCTVLEYceGNDLDFYLKQhk  563 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHK  563 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhh
Confidence            889999999999999999764

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.60  E-value=3.6e-08  Score=94.36  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             cccccceeccCCcceEEEEEEcC-CcEEEEEeccc---cc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKE---AD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~---~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      +|...+.||+|+||.||++.... +..+++|.++.   .. ......++.+|+.++++++||||+++++.+...+..++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            35667889999999999998543 33444554432   11 112345677899999999999999999999988899999


Q ss_pred             EeccCCCChhhhhcc
Q 011189          465 YEFVSNGTLFHHIHS  479 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~  479 (491)
                      +||+++++|.++++.
T Consensus        81 ~e~~~~~~l~~~~~~   95 (260)
T cd08222          81 TEYCEGRDLDCKLEE   95 (260)
T ss_pred             EEeCCCCCHHHHHHH
Confidence            999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.60  E-value=1.5e-07  Score=93.72  Aligned_cols=84  Identities=21%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             eccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC---CCCccccEEeEEEeCCccEEEEeccCC
Q 011189          397 LGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI---NHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       397 lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ||+|+||+||++... .++.+|+|.+....  .......+.+|..++...   +||||++++..+...+..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            699999999999864 57899999986432  112334566777777665   699999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      |+|.++|..+
T Consensus        81 g~L~~~l~~~   90 (330)
T cd05586          81 GELFWHLQKE   90 (330)
T ss_pred             ChHHHHHHhc
Confidence            9999998764

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.60  E-value=1.3e-07  Score=92.24  Aligned_cols=92  Identities=25%  Similarity=0.365  Sum_probs=75.4

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-hHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  464 (491)
                      ++|...+.||+|+||.||++... +++.+++|.++..... .....+.+|+.++.+++||||+++++++...  +..+||
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            45667788999999999999975 5788999998754321 2234678899999999999999999998877  789999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||++ ++|.+++....
T Consensus        85 ~e~~~-~~L~~~~~~~~  100 (293)
T cd07843          85 MEYVE-HDLKSLMETMK  100 (293)
T ss_pred             ehhcC-cCHHHHHHhcc
Confidence            99997 59999887643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.59  E-value=1.3e-07  Score=92.77  Aligned_cols=93  Identities=25%  Similarity=0.432  Sum_probs=75.4

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  459 (491)
                      ..++|+..+.||+|+||.||+|... +++.||+|.++.... ......+.+|+.++++++||||+++++.+...+     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4567888899999999999999975 578999999865432 123356789999999999999999999887654     


Q ss_pred             -----ccEEEEeccCCCChhhhhccC
Q 011189          460 -----VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 -----~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                           ..+||+||+++ +|.+++...
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~  109 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESG  109 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcC
Confidence                 78899999985 788877754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.58  E-value=2.1e-07  Score=93.25  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=75.4

Q ss_pred             HHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC---
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK---  459 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---  459 (491)
                      ....++|...+.||+|+||.||++.. .++..||+|++.... .....+.+.+|+.++++++|+||+++++++....   
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            33456788889999999999999984 468899999985432 2233467889999999999999999999886543   


Q ss_pred             ---ccEEEEeccCCCChhhhhcc
Q 011189          460 ---VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       460 ---~~~lv~Ey~~~GsL~~~L~~  479 (491)
                         ..++|+||+ +++|.+++++
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~  112 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKH  112 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhc
Confidence               348999999 6799888865

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.58  E-value=2.9e-07  Score=85.51  Aligned_cols=90  Identities=32%  Similarity=0.515  Sum_probs=78.0

Q ss_pred             cccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          392 DKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ...+.||+|++|.||++...+ ++.+++|.+.........+.+.+|++.+.+++|+|++++++.+......++++||+++
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~   81 (225)
T smart00221        2 ELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEG   81 (225)
T ss_pred             ceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCC
Confidence            445789999999999999765 7899999987654322567899999999999999999999999988999999999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      ++|.+++....
T Consensus        82 ~~L~~~~~~~~   92 (225)
T smart00221       82 GDLFDYLRKKG   92 (225)
T ss_pred             CCHHHHHHhcc
Confidence            99999998654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.58  E-value=1.3e-07  Score=91.68  Aligned_cols=90  Identities=28%  Similarity=0.440  Sum_probs=75.0

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |+..+.||+|++|.||++.. .++..+++|++..... ....+.+.+|++++++++|+|++++++.+...+..++++||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            34567899999999999985 4688999998865432 123367889999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      + ++|.+++....
T Consensus        81 ~-~~l~~~~~~~~   92 (283)
T cd07835          81 D-LDLKKYMDSSP   92 (283)
T ss_pred             C-cCHHHHHhhCC
Confidence            5 69999997654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.58  E-value=1.4e-07  Score=94.23  Aligned_cols=92  Identities=23%  Similarity=0.422  Sum_probs=74.9

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----cc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----VP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~  461 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.+...........+.+|+.++++++|+||+++++.+....     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            45788889999999999999985 4678999999875433345577889999999999999999998876543     47


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||++ ++|.++++.+
T Consensus        84 ~lv~e~~~-~~l~~~~~~~  101 (336)
T cd07849          84 YIVQELME-TDLYKLIKTQ  101 (336)
T ss_pred             EEEehhcc-cCHHHHHhcC
Confidence            89999997 5888887653

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.57  E-value=2.2e-07  Score=93.68  Aligned_cols=92  Identities=26%  Similarity=0.325  Sum_probs=73.5

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  459 (491)
                      ..++|...+.||+|+||.||++.. ..++.+|+|.+.... .......+.+|+.+++.++||||+++++++...+     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            346788889999999999999985 457899999986432 2234567889999999999999999999886543     


Q ss_pred             -ccEEEEeccCCCChhhhhcc
Q 011189          460 -VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       460 -~~~lv~Ey~~~GsL~~~L~~  479 (491)
                       ..++||||+++ +|.+.++.
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~  118 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM  118 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc
Confidence             46899999974 67766653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.56  E-value=9.6e-09  Score=110.88  Aligned_cols=107  Identities=18%  Similarity=0.280  Sum_probs=88.5

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh--hHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI--RVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      .++....++|.+.++||+|+||.|...+++ .++.+|.|++......  ....-|..|-.+|..-+.+.||.|...+.+.
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            455556688999999999999999999864 5788999998764321  2345688899999999999999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCCCCcccccc
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      +++|||||||+||||..+|-... ..+-+|.
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~-~~pE~~A  177 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFD-RLPEDWA  177 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcC-CChHHHH
Confidence            99999999999999999998765 3455664

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.56  E-value=1.1e-07  Score=95.90  Aligned_cols=86  Identities=17%  Similarity=0.274  Sum_probs=72.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..+|...+.||+|+||.||++... .++.||+|.....       ....|+.++++++|+||+++++.+...+..++|+|
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  137 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP  137 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence            346888899999999999999864 4578999975432       23468999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+. |+|.+++....
T Consensus       138 ~~~-~~l~~~l~~~~  151 (357)
T PHA03209        138 HYS-SDLYTYLTKRS  151 (357)
T ss_pred             ccC-CcHHHHHHhcc
Confidence            995 79999987643

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.55  E-value=9e-08  Score=92.92  Aligned_cols=89  Identities=26%  Similarity=0.436  Sum_probs=74.1

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|+||.||++... .++.+|+|.++.... ......+.+|+.++++++|+||+++++.....+..++++||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            566788999999999999864 678999999865322 122356788999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      + ++|.+++++.
T Consensus        82 ~-~~l~~~~~~~   92 (284)
T cd07839          82 D-QDLKKYFDSC   92 (284)
T ss_pred             C-CCHHHHHHhc
Confidence            7 5898888754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.55  E-value=3.1e-07  Score=90.76  Aligned_cols=89  Identities=25%  Similarity=0.364  Sum_probs=73.3

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |...+.||+|+||+||++.. ..+..+++|.+....  .....+.+.+|+++++.++|+|++++++++...+..++|+||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            44456799999999999985 357899999886432  223446788999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +. |+|.+++...
T Consensus       103 ~~-~~l~~~l~~~  114 (313)
T cd06633         103 CL-GSASDLLEVH  114 (313)
T ss_pred             CC-CCHHHHHHhc
Confidence            96 6888887654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.54  E-value=3e-07  Score=90.60  Aligned_cols=90  Identities=22%  Similarity=0.348  Sum_probs=73.9

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEecccc--chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEA--DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .|...+.||+|+||.||++... ++..+++|.+...  ......+++.+|+.+++.++|+|++++++++......++|+|
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            3555678999999999999864 5788999987642  222344678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+. |+|.+++...
T Consensus        96 ~~~-~~l~~~~~~~  108 (308)
T cd06634          96 YCL-GSASDLLEVH  108 (308)
T ss_pred             ccC-CCHHHHHHHc
Confidence            996 6888877644

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.53  E-value=3.3e-09  Score=96.26  Aligned_cols=91  Identities=29%  Similarity=0.455  Sum_probs=74.4

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++.|+.-++||+|.|..|++... ..|+.+|+|.+.... .....+++.+|++|.+.++|||||+|.....+....+||+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            34566667899999999998864 467788888765432 1134578899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhc
Q 011189          466 EFVSNGTLFHHIH  478 (491)
Q Consensus       466 Ey~~~GsL~~~L~  478 (491)
                      |+|++|+|..-|.
T Consensus        90 e~m~G~dl~~eIV  102 (355)
T KOG0033|consen   90 DLVTGGELFEDIV  102 (355)
T ss_pred             ecccchHHHHHHH
Confidence            9999999987554

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.52  E-value=2.7e-07  Score=92.09  Aligned_cols=86  Identities=23%  Similarity=0.371  Sum_probs=71.0

Q ss_pred             cceeccCCcceEEEEEEc-CCcEEEEEeccccchhh-------------HHHHHHHHHHHHHcCCCCccccEEeEEEeCC
Q 011189          394 SNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIR-------------VSQEFQHEMGIVSQINHKNVVKILGLCLQTK  459 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~-------------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  459 (491)
                      .+.||+|+||+||++... .++.||+|.++......             ....+.+|++++++++|+||+++++.+...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            467999999999999854 68899999876432211             0125789999999999999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++||||++ |+|.+++..+
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~  113 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRK  113 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhc
Confidence            9999999997 6999998754

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=98.52  E-value=1.2e-07  Score=90.96  Aligned_cols=92  Identities=21%  Similarity=0.343  Sum_probs=74.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-----CCcc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-----TKVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-----~~~~  461 (491)
                      ..|...+.||+|+||.|.++.. +++..||||++... ...-..++-.||+.+|+.++|+||+.++.....     -+..
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~Dv  101 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDV  101 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccccee
Confidence            3444457899999999999985 46799999998732 333456778999999999999999999998865     2478


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      |+|+|+|+ .||.+.|+++.
T Consensus       102 YiV~elMe-tDL~~iik~~~  120 (359)
T KOG0660|consen  102 YLVFELME-TDLHQIIKSQQ  120 (359)
T ss_pred             EEehhHHh-hHHHHHHHcCc
Confidence            99999995 69999999764

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.52  E-value=3e-07  Score=90.92  Aligned_cols=82  Identities=23%  Similarity=0.448  Sum_probs=66.6

Q ss_pred             cceeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccEEEEecc
Q 011189          394 SNFLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPLLVYEFV  468 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~Ey~  468 (491)
                      .++||+|+||.||++...   .++.+|+|.+.....   ...+.+|+.++++++||||+++++.+..  ....++++||+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI---SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC---cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEecc
Confidence            357999999999999864   457899999865432   3457899999999999999999998864  34678999999


Q ss_pred             CCCChhhhhcc
Q 011189          469 SNGTLFHHIHS  479 (491)
Q Consensus       469 ~~GsL~~~L~~  479 (491)
                      . ++|.+++..
T Consensus        83 ~-~~l~~~~~~   92 (317)
T cd07868          83 E-HDLWHIIKF   92 (317)
T ss_pred             C-CCHHHHHHh
Confidence            6 588888764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.52  E-value=2.6e-07  Score=92.57  Aligned_cols=93  Identities=20%  Similarity=0.326  Sum_probs=74.2

Q ss_pred             HhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----  458 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----  458 (491)
                      ...++|...+.||+|+||+||++.. ..++.||+|.+..... ....+.+.+|+.++++++|+||+++++++...     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            3456788889999999999999985 4678999999865422 12346688999999999999999999887543     


Q ss_pred             -CccEEEEeccCCCChhhhhcc
Q 011189          459 -KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 -~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                       ...++++|++ +++|.++++.
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~~  112 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVKC  112 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHhc
Confidence             3568999988 7899888764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.51  E-value=2.2e-07  Score=96.35  Aligned_cols=86  Identities=27%  Similarity=0.444  Sum_probs=67.7

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--------  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------  458 (491)
                      ..+|...+.||+|+||.||++.. ..++.||+|++....     ....+|+.++++++|+|||++++++...        
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~-----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP-----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc-----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            45688889999999999999986 457899999886432     2234799999999999999998876432        


Q ss_pred             CccEEEEeccCCCChhhhhcc
Q 011189          459 KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ...++||||++ ++|.++++.
T Consensus       140 ~~l~lvmE~~~-~~l~~~~~~  159 (440)
T PTZ00036        140 IFLNVVMEFIP-QTVHKYMKH  159 (440)
T ss_pred             eEEEEEEecCC-ccHHHHHHH
Confidence            13568999998 578777753

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.51  E-value=3.3e-07  Score=90.52  Aligned_cols=81  Identities=22%  Similarity=0.468  Sum_probs=66.1

Q ss_pred             ceeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccEEEEeccC
Q 011189          395 NFLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPLLVYEFVS  469 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~Ey~~  469 (491)
                      ..||+|+||+||++...   .+..+|+|.+....   ....+.+|+.++++++||||+++++++..  ....++|+||++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG---ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC---CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            57999999999999864   34689999886543   23467899999999999999999998864  456789999987


Q ss_pred             CCChhhhhcc
Q 011189          470 NGTLFHHIHS  479 (491)
Q Consensus       470 ~GsL~~~L~~  479 (491)
                       ++|.+++..
T Consensus        84 -~~l~~~~~~   92 (317)
T cd07867          84 -HDLWHIIKF   92 (317)
T ss_pred             -CcHHHHHHh
Confidence             588888764

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.51  E-value=2.2e-07  Score=88.12  Aligned_cols=85  Identities=28%  Similarity=0.360  Sum_probs=73.1

Q ss_pred             eccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      ||+|+||.||++... +++.+++|.++....  ......+.+|+.++++++|+||+++++.+...+..+++|||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999864 578999998865432  12456789999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 011189          474 FHHIHSKS  481 (491)
Q Consensus       474 ~~~L~~~~  481 (491)
                      .+++....
T Consensus        81 ~~~l~~~~   88 (250)
T cd05123          81 FSHLSKEG   88 (250)
T ss_pred             HHHHHhcC
Confidence            99998653

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PRK10345 hypothetical protein; Provisional

Probab=98.51  E-value=4e-07  Score=84.10  Aligned_cols=86  Identities=15%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             cccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-----CCCccccEEeEEEeCC---c-cE
Q 011189          392 DKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-----NHKNVVKILGLCLQTK---V-PL  462 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-----~H~niv~l~g~~~~~~---~-~~  462 (491)
                      ...+.||+|+||.||.  .......+||.+..... ...+.+.+|+.+++++     +||||++++|...+..   . ..
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~-~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGD-GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCeEEEEEecccc-chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            3457899999999996  33333346888765433 2446799999999999     5799999999998864   3 33


Q ss_pred             EEEec--cCCCChhhhhccC
Q 011189          463 LVYEF--VSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey--~~~GsL~~~L~~~  480 (491)
                      +|+||  .++|+|.++|++.
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~  101 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQC  101 (210)
T ss_pred             EEecCCCCcchhHHHHHHcc
Confidence            78999  6689999999764

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.51  E-value=3.2e-07  Score=89.06  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             eeccCCcceEEEEEE-cCCcEEEEEeccccch--hhHHHHHHHHHHHH---HcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          396 FLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK--IRVSQEFQHEMGIV---SQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l---~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      .||+|+||.||++.. .+++.+|+|.+.....  ......+.+|..++   ...+|+||+++.+.+...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999986 4578999998865321  11223344554433   34479999999999999899999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +|+|.++|+.+
T Consensus        81 ~~~L~~~i~~~   91 (279)
T cd05633          81 GGDLHYHLSQH   91 (279)
T ss_pred             CCCHHHHHHhc
Confidence            99999999765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.50  E-value=4.7e-07  Score=90.81  Aligned_cols=100  Identities=20%  Similarity=0.316  Sum_probs=79.0

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ  457 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  457 (491)
                      ...++....++|...+.||+|+||.||++.. .+++.||+|++.... .....+.+.+|+.++.+++|+||+++++.+..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            3456677889999999999999999999984 468899999986532 22234678899999999999999999998764


Q ss_pred             C------CccEEEEeccCCCChhhhhccC
Q 011189          458 T------KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       458 ~------~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .      ...++++|++ +++|.++++.+
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~~~  115 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIVKCQ  115 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHHhcC
Confidence            3      2467788876 78998887653

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.50  E-value=3.5e-07  Score=89.02  Aligned_cols=85  Identities=18%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|+||.||++... .++.+|+|.+...........+.+|+.++.++. |+||+++++.+...+..++++||+
T Consensus         6 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~   85 (288)
T cd06616           6 LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELM   85 (288)
T ss_pred             hHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecc
Confidence            444567999999999999854 578999999876543345677999999999996 999999999998888999999998


Q ss_pred             CCCChhhh
Q 011189          469 SNGTLFHH  476 (491)
Q Consensus       469 ~~GsL~~~  476 (491)
                      + ++|.++
T Consensus        86 ~-~~l~~l   92 (288)
T cd06616          86 D-ISLDKF   92 (288)
T ss_pred             c-CCHHHH
Confidence            6 355443

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.50  E-value=5.5e-07  Score=86.14  Aligned_cols=86  Identities=23%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHH-HHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGI-VSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||.||++... .++.+|+|.++....  ......+..|..+ ....+|+|++++++.+...+..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            46899999999999863 578999999865431  1222345555544 4455899999999999999999999999999


Q ss_pred             CChhhhhccC
Q 011189          471 GTLFHHIHSK  480 (491)
Q Consensus       471 GsL~~~L~~~  480 (491)
                      ++|.++++..
T Consensus        82 ~~L~~~l~~~   91 (260)
T cd05611          82 GDCASLIKTL   91 (260)
T ss_pred             CCHHHHHHHc
Confidence            9999999764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.50  E-value=7e-08  Score=98.57  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             cceeccCCcceEEEEEE-cCCcEEEEEecccc---chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc--cEEEEec
Q 011189          394 SNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA---DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV--PLLVYEF  467 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~---~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~--~~lv~Ey  467 (491)
                      ..+||+|+|-+||||.. ..|..||...++..   ..+...++|..|+++|+.|+|+|||+++..+.....  .-+|+|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            46799999999999985 35777877655433   344567899999999999999999999999987654  6799999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      |..|+|..|+++.+
T Consensus       125 ~TSGtLr~Y~kk~~  138 (632)
T KOG0584|consen  125 FTSGTLREYRKKHR  138 (632)
T ss_pred             ccCCcHHHHHHHhc
Confidence            99999999999764

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.49  E-value=2.5e-07  Score=91.34  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=69.6

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      +.+|.|+++.|+++.. +++.+|+|++... ......+.+.+|+.+++.++|+||+++++++...+..+++|||+++|+|
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            3345556656666555 6889999998754 2334567899999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 011189          474 FHHIHSK  480 (491)
Q Consensus       474 ~~~L~~~  480 (491)
                      .++|+..
T Consensus        87 ~~~l~~~   93 (314)
T cd08216          87 EDLLKTH   93 (314)
T ss_pred             HHHHHHh
Confidence            9999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=6e-08  Score=105.65  Aligned_cols=81  Identities=26%  Similarity=0.442  Sum_probs=66.1

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      -..+|++.++||+||||.|||++.+ ||+.+|||++.............+|+.++++|+|||||+++..+.+.....-++
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~  556 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVL  556 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccc
Confidence            4456778889999999999999854 899999999987644345577899999999999999999999998766555444


Q ss_pred             ec
Q 011189          466 EF  467 (491)
Q Consensus       466 Ey  467 (491)
                      |-
T Consensus       557 ei  558 (1351)
T KOG1035|consen  557 EI  558 (1351)
T ss_pred             cc
Confidence            43

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.49  E-value=3.3e-07  Score=91.54  Aligned_cols=92  Identities=26%  Similarity=0.425  Sum_probs=74.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEecccc-chhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC--CccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT--KVPL  462 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~--~~~~  462 (491)
                      .++|...+.||+|+||.||++... .+..+|+|++... ........+.+|+.++.++ +|+||+++++++...  ...+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            456777788999999999999864 5788999987542 1223446688999999999 999999999988653  3679


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||++ ++|.++++..
T Consensus        86 lv~e~~~-~~L~~~~~~~  102 (337)
T cd07852          86 LVFEYME-TDLHAVIRAN  102 (337)
T ss_pred             EEecccc-cCHHHHHhcC
Confidence            9999997 5999998754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.49  E-value=3.6e-07  Score=89.97  Aligned_cols=92  Identities=23%  Similarity=0.384  Sum_probs=73.8

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  463 (491)
                      .++|+..+.||+|+||.||++... .++.||+|.++.... ......+.+|+.++.+++|+||+++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            356788889999999999999864 588999999864422 12234567899999999999999999998765  46799


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      |+||++ ++|.+++...
T Consensus        86 v~e~~~-~~l~~~l~~~  101 (309)
T cd07845          86 VMEYCE-QDLASLLDNM  101 (309)
T ss_pred             EEecCC-CCHHHHHHhc
Confidence            999997 5898888754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.49  E-value=4.3e-07  Score=91.80  Aligned_cols=92  Identities=22%  Similarity=0.292  Sum_probs=73.2

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------  458 (491)
                      ..++|...+.||+|+||.||++.. ..++.+|+|++.... .....+.+.+|+.+++.++||||+++++.+...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            356788889999999999999985 357889999986532 223456788999999999999999999987543      


Q ss_pred             CccEEEEeccCCCChhhhhcc
Q 011189          459 KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ...++||||+++ +|.+++..
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~  121 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQM  121 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHh
Confidence            356899999974 77777653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.48  E-value=3.9e-07  Score=89.21  Aligned_cols=90  Identities=17%  Similarity=0.286  Sum_probs=73.0

Q ss_pred             ccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|++|.||++..+. ++.+|+|.++.........++.+|+.++.+.. |+||+++++.+......++++|
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            456677899999999999999764 88999999876543334566778888777775 9999999999999999999999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      |++ ++|.+++..
T Consensus        95 ~~~-~~l~~l~~~  106 (296)
T cd06618          95 LMS-TCLDKLLKR  106 (296)
T ss_pred             ccC-cCHHHHHHH
Confidence            985 467766654

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.48  E-value=4.1e-07  Score=91.58  Aligned_cols=92  Identities=24%  Similarity=0.311  Sum_probs=73.5

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------  458 (491)
                      ..++|...+.||+|+||.||++.. ..++.+|+|.+.... .....+.+.+|+.+++.++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            456888889999999999999985 357899999986542 223457788999999999999999999988643      


Q ss_pred             CccEEEEeccCCCChhhhhcc
Q 011189          459 KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ...++||||+++ +|.++++.
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~  114 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQM  114 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhh
Confidence            246899999974 67776653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.47  E-value=5e-07  Score=88.73  Aligned_cols=91  Identities=26%  Similarity=0.441  Sum_probs=72.6

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc------
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV------  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  460 (491)
                      ++|+..+.||+|+||.||++... +++.+|+|.+..... ......+.+|+.++++++||||+++++.+...+.      
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            46778889999999999999864 578999998764321 1223456789999999999999999999876543      


Q ss_pred             --cEEEEeccCCCChhhhhccC
Q 011189          461 --PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 --~~lv~Ey~~~GsL~~~L~~~  480 (491)
                        .++|+||+. ++|.+++...
T Consensus        92 ~~~~lv~e~~~-~~l~~~l~~~  112 (310)
T cd07865          92 GSFYLVFEFCE-HDLAGLLSNK  112 (310)
T ss_pred             ceEEEEEcCCC-cCHHHHHHhc
Confidence              489999996 5888888754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.46  E-value=3.7e-07  Score=93.28  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             ccccccceeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .+|...+.||+|+||.||++...   .+..|++|.+...      ..+.+|+.++++++|||||++++.+......+++|
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG------KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence            35677788999999999999753   3467999987643      23458999999999999999999999889999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      |++. ++|.++|...
T Consensus       166 e~~~-~~l~~~l~~~  179 (392)
T PHA03207        166 PKYK-CDLFTYVDRS  179 (392)
T ss_pred             hhcC-CCHHHHHHhc
Confidence            9996 7899998543

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.46  E-value=6.3e-07  Score=86.40  Aligned_cols=88  Identities=19%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             hcccccccee--ccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFL--GEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~l--G~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  463 (491)
                      .+.|...+.+  |+|+||.||++.. .++..+|+|.+..... ...     |+.....+ +|+|++++++.+...+..++
T Consensus        13 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~-~~~-----e~~~~~~~~~h~~iv~~~~~~~~~~~~~i   86 (267)
T PHA03390         13 LKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNF-NAI-----EPMVHQLMKDNPNFIKLYYSVTTLKGHVL   86 (267)
T ss_pred             HHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhc-chh-----hHHHHHHhhcCCCEEEEEEEEecCCeeEE
Confidence            3455555555  9999999999985 3577899998765321 111     22222212 79999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++|+++.
T Consensus        87 v~e~~~~~~L~~~l~~~~  104 (267)
T PHA03390         87 IMDYIKDGDLFDLLKKEG  104 (267)
T ss_pred             EEEcCCCCcHHHHHHhcC
Confidence            999999999999998753

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.46  E-value=3.3e-07  Score=89.13  Aligned_cols=90  Identities=21%  Similarity=0.419  Sum_probs=68.1

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-hHHHHHHHHHHHHHcC---CCCccccEEeEEEeC-----C
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQI---NHKNVVKILGLCLQT-----K  459 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~-----~  459 (491)
                      +|...+.||+|+||+||++... +++.+|+|.++..... .....+.+|+.++..+   +||||+++++++...     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            3566788999999999999864 5789999988653211 1224466777777655   799999999987642     3


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++++||++ ++|.++++..
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~  100 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKV  100 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhc
Confidence            5789999997 5899998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.45  E-value=5.7e-07  Score=90.08  Aligned_cols=90  Identities=20%  Similarity=0.320  Sum_probs=71.4

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      .++|...+.||+|+||.||++.. .+++.+|+|++.... .......+.+|+.++++++|+||+++++++....      
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            36788889999999999999985 468899999886432 2123456889999999999999999999986543      


Q ss_pred             ccEEEEeccCCCChhhhhc
Q 011189          460 VPLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~  478 (491)
                      ..++|+||+. .+|.+++.
T Consensus        94 ~~~lv~e~~~-~~l~~~~~  111 (342)
T cd07879          94 DFYLVMPYMQ-TDLQKIMG  111 (342)
T ss_pred             eEEEEecccc-cCHHHHHc
Confidence            4589999996 47776653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.45  E-value=2.8e-07  Score=91.60  Aligned_cols=91  Identities=21%  Similarity=0.353  Sum_probs=75.5

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-----ccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-----VPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~  462 (491)
                      +|...+.||+|++|.||++... .++.+++|.+..... ....+.+.+|+.+++.++|+||+++++.+...+     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            3566788999999999999964 478999999875432 244577999999999999999999999987765     789


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +++||++ ++|.+++++..
T Consensus        81 lv~e~~~-~~l~~~l~~~~   98 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQ   98 (330)
T ss_pred             EEecchh-hhHHHHHhCCC
Confidence            9999998 58999987653

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.44  E-value=2.6e-07  Score=89.44  Aligned_cols=88  Identities=25%  Similarity=0.427  Sum_probs=74.8

Q ss_pred             cccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          392 DKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +..+.||+|++|.||++... +++.+++|.+.... .....+.+.+|+.++++++|+|++++++.+...+..++|+||++
T Consensus         2 ~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   81 (282)
T cd07829           2 EKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD   81 (282)
T ss_pred             eeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC
Confidence            44567999999999999965 48899999987653 22334678899999999999999999999999999999999998


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                       ++|.++|++.
T Consensus        82 -~~l~~~i~~~   91 (282)
T cd07829          82 -MDLKKYLDKR   91 (282)
T ss_pred             -cCHHHHHHhh
Confidence             5999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.44  E-value=2.7e-08  Score=101.17  Aligned_cols=89  Identities=21%  Similarity=0.376  Sum_probs=73.8

Q ss_pred             cccccceeccCCcceEEEEEEcCC-cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDD-TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~-~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .|.+...||.|+||+|||+..++. -..|.|.+..... ...++|+-|++||....||+||+|++.+...+.+||+.||+
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkse-EELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSE-EELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccch-hHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence            344456699999999999987654 3456676665544 67899999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcc
Q 011189          469 SNGTLFHHIHS  479 (491)
Q Consensus       469 ~~GsL~~~L~~  479 (491)
                      .||-+...+-.
T Consensus       112 ~GGAVDaimlE  122 (1187)
T KOG0579|consen  112 GGGAVDAIMLE  122 (1187)
T ss_pred             CCchHhHHHHH
Confidence            99988876654

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.44  E-value=3.6e-07  Score=91.57  Aligned_cols=90  Identities=26%  Similarity=0.343  Sum_probs=73.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC---------
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT---------  458 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~---------  458 (491)
                      .+|...+.||.|+||.||++.. ..+..||+|.+..... ...+.+.+|++++++++||||+++++.....         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~-~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP-QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC-chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            5677788999999999999985 4578999999866543 4457788999999999999999998776543         


Q ss_pred             -----CccEEEEeccCCCChhhhhccC
Q 011189          459 -----KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 -----~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                           ...++|+||++ ++|.+++...
T Consensus        84 ~~~~~~~~~lv~e~~~-~~L~~~~~~~  109 (342)
T cd07854          84 SLTELNSVYIVQEYME-TDLANVLEQG  109 (342)
T ss_pred             cccccceEEEEeeccc-ccHHHHHHcC
Confidence                 34689999997 5898888643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.44  E-value=4.1e-07  Score=90.91  Aligned_cols=91  Identities=23%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----Ccc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  461 (491)
                      ++|...+.||+|+||+||++.. .+++.||+|.+.... .......+.+|+.+++.++|+||+++++++...     ...
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            4677788999999999999985 467899999986532 213346678999999999999999999987643     347


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +||+||+. ++|.+++...
T Consensus        85 ~lv~e~~~-~~L~~~~~~~  102 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSS  102 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcC
Confidence            99999996 7899888754

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.43  E-value=9.1e-07  Score=89.00  Aligned_cols=92  Identities=23%  Similarity=0.348  Sum_probs=74.2

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------  458 (491)
                      ..++|+..+.||+|+||.||++.. .+++.+|+|.+... .......++.+|+.+++.++|+||+++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            456788889999999999999985 46889999998643 2223456788999999999999999999987643      


Q ss_pred             CccEEEEeccCCCChhhhhcc
Q 011189          459 KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ...++|+||+. ++|.+++..
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~  113 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQM  113 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhh
Confidence            35689999996 588887764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.42  E-value=3.7e-07  Score=91.10  Aligned_cols=92  Identities=24%  Similarity=0.380  Sum_probs=74.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  462 (491)
                      ++|...+.||+|++|.||++... ++..||+|++.... .......+.+|+.++.+++|+||+++++.+..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            56777889999999999999854 68899999986542 22345678899999999999999999987753    34678


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|+||+. |+|.++++...
T Consensus        85 lv~e~~~-~~l~~~~~~~~  102 (334)
T cd07855          85 VVMDLME-SDLHHIIHSDQ  102 (334)
T ss_pred             EEEehhh-hhHHHHhccCC
Confidence            9999996 68999987553

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.42  E-value=8.9e-07  Score=85.86  Aligned_cols=89  Identities=26%  Similarity=0.449  Sum_probs=70.6

Q ss_pred             ccccceeccCCcceEEEEEEcC-CcEEEEEeccccch-hhHHHHHHHHHHHHHcC---CCCccccEEeEEEeCCc-----
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADK-IRVSQEFQHEMGIVSQI---NHKNVVKILGLCLQTKV-----  460 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~-----  460 (491)
                      |+..+.||+|+||.||++..+. ++.+|+|.++.... ......+.+|+.++.++   +|+|++++++.+...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            3456789999999999999764 88999999874422 12335677788777665   69999999999988776     


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++++||++ ++|.++++..
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~   99 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKC   99 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHc
Confidence            899999997 5899988764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.41  E-value=1.2e-07  Score=91.56  Aligned_cols=97  Identities=25%  Similarity=0.391  Sum_probs=80.4

Q ss_pred             HHHHhhccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEE
Q 011189          383 ELIKATKNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL  456 (491)
Q Consensus       383 el~~~t~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  456 (491)
                      ++.....+++...++.+|.||+||.|.|++      .+.|-+|.++....+-+...|+.|..++..+.|||+.+..+++.
T Consensus       278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~i  357 (563)
T KOG1024|consen  278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSI  357 (563)
T ss_pred             hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence            444445667777889999999999997643      45677888877665556788999999999999999999999997


Q ss_pred             e-CCccEEEEeccCCCChhhhhcc
Q 011189          457 Q-TKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       457 ~-~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      + .+.++.+|.++.-|+|..||..
T Consensus       358 e~~~~P~V~y~~~~~gNLK~FL~~  381 (563)
T KOG1024|consen  358 EDYATPFVLYPATGVGNLKSFLQI  381 (563)
T ss_pred             eccCcceEEEeccCcchHHHHHHH
Confidence            6 4688999999999999999993

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.38  E-value=1.6e-06  Score=84.07  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=65.0

Q ss_pred             eeccCCcceEEEEEE-cCCcEEEEEeccccch--hhHHHHHHHHHH---HHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          396 FLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK--IRVSQEFQHEMG---IVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~---~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +||+|+||.||++.. ..++.||+|.+.....  ......+..|..   +++..+||+|+++++.+...+..++|+||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999985 4578999998765321  111222444433   4455689999999999999999999999999


Q ss_pred             CCChhhhhccC
Q 011189          470 NGTLFHHIHSK  480 (491)
Q Consensus       470 ~GsL~~~L~~~  480 (491)
                      +|+|.+++...
T Consensus        81 g~~L~~~l~~~   91 (278)
T cd05606          81 GGDLHYHLSQH   91 (278)
T ss_pred             CCcHHHHHHhc
Confidence            99999988754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.37  E-value=2.2e-06  Score=78.18  Aligned_cols=84  Identities=33%  Similarity=0.557  Sum_probs=73.8

Q ss_pred             eccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChhh
Q 011189          397 LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFH  475 (491)
Q Consensus       397 lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~  475 (491)
                      ||+|.+|.||++.... ++.+++|.+.........+.+.+|+..+..++|++++++++........++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999754 889999998766442245779999999999999999999999999899999999999999999


Q ss_pred             hhccC
Q 011189          476 HIHSK  480 (491)
Q Consensus       476 ~L~~~  480 (491)
                      ++...
T Consensus        81 ~~~~~   85 (215)
T cd00180          81 LLKEN   85 (215)
T ss_pred             HHHhc
Confidence            99865

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.36  E-value=7.1e-08  Score=105.68  Aligned_cols=92  Identities=27%  Similarity=0.501  Sum_probs=78.8

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++....+||.|.||.||.+. .+.|...|+|.++.... ........+|+.++..|+|||+|+.+|+-.+++..+|.|||
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHH
Confidence            45666789999999999998 56788999998765432 12346688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.+.+...+
T Consensus      1316 C~~GsLa~ll~~gr 1329 (1509)
T KOG4645|consen 1316 CEGGSLASLLEHGR 1329 (1509)
T ss_pred             hccCcHHHHHHhcc
Confidence            99999999988653

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.34  E-value=1e-06  Score=85.30  Aligned_cols=89  Identities=28%  Similarity=0.482  Sum_probs=74.5

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.||+|++|.||++... +++.+++|.+..... ......+.+|+.++++++|+||+++++.+...+..++|+||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            344578999999999999864 678899999865432 134567889999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      ++ +|.+++..+
T Consensus        81 ~~-~l~~~l~~~   91 (283)
T cd05118          81 DT-DLYKLIKDR   91 (283)
T ss_pred             CC-CHHHHHHhh
Confidence            74 899888764

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>PTZ00284 protein kinase; Provisional

Probab=98.34  E-value=7.2e-07  Score=93.38  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             HHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC------CccccEEeEE
Q 011189          383 ELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH------KNVVKILGLC  455 (491)
Q Consensus       383 el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H------~niv~l~g~~  455 (491)
                      ++.....+|...++||+|+||+||++... .++.||||+++....  ...++..|+.++.+++|      .++++++.++
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~--~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK--YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh--hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            34445678888999999999999999854 578899999865322  23445667777776654      4588888887


Q ss_pred             EeC-CccEEEEeccCCCChhhhhccC
Q 011189          456 LQT-KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       456 ~~~-~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ... ...+||||++ +++|.++|..+
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~~  225 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMKH  225 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHHc
Confidence            654 4678999988 67899988765

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.29  E-value=1.1e-06  Score=92.81  Aligned_cols=92  Identities=15%  Similarity=0.261  Sum_probs=67.8

Q ss_pred             hccccccceeccCCcceEEEEEEcC--CcEEEEEe--------------ccc--cchhhHHHHHHHHHHHHHcCCCCccc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD--DTQVAVKK--------------PKE--ADKIRVSQEFQHEMGIVSQINHKNVV  449 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~--~~~vavK~--------------l~~--~~~~~~~~~f~~E~~~l~~l~H~niv  449 (491)
                      .++|...+.||+|+||+||++.++.  +...+.|.              +..  .........+.+|+.++.+++|+|||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            4678888999999999999987532  11111110              100  01112345688999999999999999


Q ss_pred             cEEeEEEeCCccEEEEeccCCCChhhhhccC
Q 011189          450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       450 ~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++++...+..++|+|++. ++|.+++...
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~  256 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYD-FDLYSFMYDE  256 (501)
T ss_pred             cEeEEEEECCeeEEEEeccc-cCHHHHHhhc
Confidence            99999999999999999985 6888887653

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.28  E-value=1.4e-06  Score=85.60  Aligned_cols=92  Identities=23%  Similarity=0.362  Sum_probs=72.3

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      .++|...+.||+|+||.||++... +++.+++|.+..... ......+.+|++++++++|+||+++++......      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            467888899999999999999864 578999998764322 122356789999999999999999998875543      


Q ss_pred             --ccEEEEeccCCCChhhhhccC
Q 011189          460 --VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 --~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                        ..++|+||+. ++|.+.+...
T Consensus        87 ~~~~~lv~~~~~-~~l~~~~~~~  108 (311)
T cd07866          87 RGSVYMVTPYMD-HDLSGLLENP  108 (311)
T ss_pred             CceEEEEEecCC-cCHHHHHhcc
Confidence              4689999997 4788777654

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.28  E-value=1.2e-06  Score=88.77  Aligned_cols=93  Identities=25%  Similarity=0.369  Sum_probs=74.6

Q ss_pred             ccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchh-------hHHHHHHHHHHHHHcCC---CCccccEEeEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKI-------RVSQEFQHEMGIVSQIN---HKNVVKILGLCLQ  457 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~-------~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~  457 (491)
                      .+|...+.+|+|+||+|+.+.++. ...|.+|.+.+..-.       +..-....|+.||..++   |+||++++.++..
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            457788899999999999999754 568899987654210       11223567999999997   9999999999999


Q ss_pred             CCccEEEEecc-CCCChhhhhccCC
Q 011189          458 TKVPLLVYEFV-SNGTLFHHIHSKS  481 (491)
Q Consensus       458 ~~~~~lv~Ey~-~~GsL~~~L~~~~  481 (491)
                      .+..+|++|-. ++-+|+++|..+.
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp  665 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKP  665 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccC
Confidence            99999999965 6778999998653

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.28  E-value=1e-06  Score=88.24  Aligned_cols=93  Identities=18%  Similarity=0.329  Sum_probs=75.0

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc----
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV----  460 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----  460 (491)
                      ..++|...+.||+|++|.||++... +++.+|+|.+.... .....+.+.+|+.++++++|+|++++++.....+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            3567888899999999999999864 57899999886432 22344668899999999999999999987765554    


Q ss_pred             --cEEEEeccCCCChhhhhccC
Q 011189          461 --PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 --~~lv~Ey~~~GsL~~~L~~~  480 (491)
                        .++|+||+ +++|.+++...
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~~  113 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKCQ  113 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhcC
Confidence              88999998 57999988753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.23  E-value=4e-06  Score=76.97  Aligned_cols=83  Identities=13%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             eeccCCcceEEEEEEcCCcEEEEEeccccc-------hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          396 FLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-------KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-------~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      +||+|++|.||++.+ ++..+++|......       ......++.+|+.++..++|+++..........+..+|||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 67789999854321       1112366889999999999887766555566677789999999


Q ss_pred             CCCChhhhhcc
Q 011189          469 SNGTLFHHIHS  479 (491)
Q Consensus       469 ~~GsL~~~L~~  479 (491)
                      ++++|.+++..
T Consensus        80 ~g~~l~~~~~~   90 (199)
T TIGR03724        80 EGKPLKDVIEE   90 (199)
T ss_pred             CCccHHHHHhh
Confidence            99999988765

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.22  E-value=4.9e-06  Score=77.09  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccch-------hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK-------IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.||+|++|.||+|.. .+..+++|.......       ......+.+|+.++..++|+++.....++...+..+++|||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5699999999999987 677888997553211       01235688999999999999998877777777888999999


Q ss_pred             cCCCChhhhhcc
Q 011189          468 VSNGTLFHHIHS  479 (491)
Q Consensus       468 ~~~GsL~~~L~~  479 (491)
                      +++++|.+++..
T Consensus        81 ~~G~~L~~~~~~   92 (211)
T PRK14879         81 IEGEPLKDLINS   92 (211)
T ss_pred             eCCcCHHHHHHh
Confidence            999999988864

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=98.21  E-value=1.2e-06  Score=99.10  Aligned_cols=64  Identities=30%  Similarity=0.735  Sum_probs=44.1

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      -|-..+.|....  .||.|+|+.||.|.-.. -..++||..   ..|  +|.|.|++|+|.|.|.+|+.+..
T Consensus      3910 PC~~GgtCip~~--n~f~CnC~~gyTG~~Ce-~~Gi~eCs~---n~C~~gg~C~n~~gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3910 PCLTGGTCIPFY--NGFLCNCPNGYTGKRCE-ARGISECSK---NVCGTGGQCINIPGSFHCNCTPGILGRT 3975 (4289)
T ss_pred             CCCCCCEEEecC--CCeeEeCCCCccCceee-ccccccccc---ccccCCceeeccCCceEeccChhHhccc
Confidence            444555665322  47788888888776543 001667743   455  78999999999999999998764

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.21  E-value=3.9e-06  Score=78.63  Aligned_cols=81  Identities=23%  Similarity=0.419  Sum_probs=70.2

Q ss_pred             CcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChhhhhcc
Q 011189          401 GFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       401 ~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      +||.||++... +++.+++|.+.........+.+.+|++.+++++|+|++++++.+......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999975 47899999987654422267899999999999999999999999999999999999999999999986


Q ss_pred             CC
Q 011189          480 KS  481 (491)
Q Consensus       480 ~~  481 (491)
                      ..
T Consensus        81 ~~   82 (244)
T smart00220       81 RG   82 (244)
T ss_pred             cc
Confidence            53

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=1.8e-06  Score=87.15  Aligned_cols=92  Identities=18%  Similarity=0.306  Sum_probs=79.0

Q ss_pred             cccccceeccCCcceEEEEEEcCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEec
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .|+..+.||+||-..||+....+.+.+|+|++... .+......|.+|+.+|.+++ |.+||+|+++-...+.+||||||
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~  441 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMEC  441 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeec
Confidence            45666889999999999999888888999886543 34366788999999999994 99999999999999999999998


Q ss_pred             cCCCChhhhhccCCC
Q 011189          468 VSNGTLFHHIHSKSS  482 (491)
Q Consensus       468 ~~~GsL~~~L~~~~~  482 (491)
                      =+ -||.++|+....
T Consensus       442 Gd-~DL~kiL~k~~~  455 (677)
T KOG0596|consen  442 GD-IDLNKILKKKKS  455 (677)
T ss_pred             cc-ccHHHHHHhccC
Confidence            85 599999998765

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.19  E-value=7.5e-07  Score=84.26  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=76.1

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...++||+|.||+|...+ -..++.+|+|+++..-  ...+...=+-|-++|...+||.+..|...+...+.++.||
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM  247 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM  247 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence            455566889999999999887 3468899999987642  1133445567889999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||..+|.|+-+|.+.
T Consensus       248 eyanGGeLf~HLsre  262 (516)
T KOG0690|consen  248 EYANGGELFFHLSRE  262 (516)
T ss_pred             EEccCceEeeehhhh
Confidence            999999999988865

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=1.3e-06  Score=89.40  Aligned_cols=90  Identities=18%  Similarity=0.269  Sum_probs=76.0

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      -|...+.||-|+||+|-.+. .+....+|.|.+++.+-  .........|-.||.+.+.+.||+|+..+.+.+.+|.|||
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            46667789999999999887 44556789999887642  1344667889999999999999999999999999999999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      |++||||..+|-+
T Consensus       710 YIPGGDmMSLLIr  722 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIR  722 (1034)
T ss_pred             ccCCccHHHHHHH
Confidence            9999999998764

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.18  E-value=6.8e-06  Score=81.90  Aligned_cols=89  Identities=22%  Similarity=0.319  Sum_probs=69.2

Q ss_pred             ccccceeccCCcceEEEEEEc-C--CcEEEEEeccccc-hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC----Ccc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-D--DTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT----KVP  461 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~--~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~----~~~  461 (491)
                      |...+.||+|+||.||++... .  +..+|+|.+.... .....+.+.+|++++.++ +|+||+++++.....    ...
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            566788999999999999864 3  6789999886432 212346788999999999 599999999876433    356


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++++||+. ++|.+++...
T Consensus        82 ~~~~e~~~-~~L~~~l~~~   99 (332)
T cd07857          82 YLYEELME-ADLHQIIRSG   99 (332)
T ss_pred             EEEEeccc-CCHHHHHhcC
Confidence            78889886 6899988754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.17  E-value=2.4e-07  Score=95.14  Aligned_cols=91  Identities=24%  Similarity=0.391  Sum_probs=77.5

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..++|.....+|.|.||.|||++. +.+...|+|.++.... ....-...|+.+++.-+|||||.++|.+..++..|+.|
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~-dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPG-DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCC-ccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            456777888999999999999984 4688899998876543 23455678999999999999999999999999999999


Q ss_pred             eccCCCChhhhhc
Q 011189          466 EFVSNGTLFHHIH  478 (491)
Q Consensus       466 Ey~~~GsL~~~L~  478 (491)
                      ||+.+|+|.+.-|
T Consensus        92 EycgggslQdiy~  104 (829)
T KOG0576|consen   92 EYCGGGSLQDIYH  104 (829)
T ss_pred             EecCCCcccceee
Confidence            9999999998655

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.16  E-value=2.8e-06  Score=77.47  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchh-hH-------H-----------------HHHHHHHHHHHcCCCCccc
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-RV-------S-----------------QEFQHEMGIVSQINHKNVV  449 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~-~~-------~-----------------~~f~~E~~~l~~l~H~niv  449 (491)
                      ..||+|+||.||++...+|+.||+|.++..... ..       .                 ....+|+..+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            579999999999999878999999998654210 00       0                 1223599999999887764


Q ss_pred             cEEeEEEeCCccEEEEeccCCCChhhh
Q 011189          450 KILGLCLQTKVPLLVYEFVSNGTLFHH  476 (491)
Q Consensus       450 ~l~g~~~~~~~~~lv~Ey~~~GsL~~~  476 (491)
                      .....  .....+|||||+++++|...
T Consensus        83 ~p~~~--~~~~~~iVmE~i~g~~l~~~  107 (190)
T cd05147          83 CPEPI--LLKSHVLVMEFIGDDGWAAP  107 (190)
T ss_pred             CCcEE--EecCCEEEEEEeCCCCCcch
Confidence            43322  22334899999998877654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.14  E-value=9e-06  Score=86.50  Aligned_cols=89  Identities=11%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEe-cccc-c-----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEA-D-----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~-l~~~-~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      ..|...+.||+|+||.||++.+.... +++|+ .... .     .....+++.+|++++..++|++++....+....+..
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~  411 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK  411 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence            34455688999999999999874443 33333 2111 1     111236689999999999999999888777777788


Q ss_pred             EEEEeccCCCChhhhhc
Q 011189          462 LLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~  478 (491)
                      ++||||+++++|.++++
T Consensus       412 ~lv~E~~~g~~L~~~l~  428 (535)
T PRK09605        412 TIVMEYIGGKDLKDVLE  428 (535)
T ss_pred             EEEEEecCCCcHHHHHH
Confidence            99999999999999874

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.13  E-value=5.7e-07  Score=82.95  Aligned_cols=82  Identities=21%  Similarity=0.260  Sum_probs=68.4

Q ss_pred             cceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          394 SNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      ...||.|+||+|+|-.++ .|+..|||+++......+.++|+.|.+...+- +.||||+++|.....+..||-||.|. -
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~  147 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD-I  147 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-h
Confidence            456999999999998864 58999999998776556778899999775554 78999999999999999999999995 4


Q ss_pred             Chhhh
Q 011189          472 TLFHH  476 (491)
Q Consensus       472 sL~~~  476 (491)
                      +|..+
T Consensus       148 SlDkl  152 (361)
T KOG1006|consen  148 SLDKL  152 (361)
T ss_pred             hHHHH
Confidence            65544

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.12  E-value=8.7e-06  Score=75.83  Aligned_cols=90  Identities=10%  Similarity=0.041  Sum_probs=70.9

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccch--hhHHHH------HHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK--IRVSQE------FQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~--~~~~~~------f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      ...+|...+++|.|+||.||.... ++..+++|.+++...  +...+.      |.+|+..+.+++|++|..+..+....
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            457888999999999999998655 567899999875432  122223      67999999999999999988775533


Q ss_pred             --------CccEEEEeccCCCChhhhh
Q 011189          459 --------KVPLLVYEFVSNGTLFHHI  477 (491)
Q Consensus       459 --------~~~~lv~Ey~~~GsL~~~L  477 (491)
                              ...+|+|||++|.+|.++.
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~  134 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMP  134 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhh
Confidence                    3578999999999998764

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.08  E-value=7.7e-07  Score=80.38  Aligned_cols=84  Identities=23%  Similarity=0.561  Sum_probs=70.1

Q ss_pred             hccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeC--CccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQT--KVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~l  463 (491)
                      .++|+..+.+|+|.++.|+.|. ..+...+.||.+++...    +...+|+.||..+. ||||++|+....++  ..+.|
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk----kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK----KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH----HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            4567778899999999999998 45678899999987543    66889999999997 99999999998654  47889


Q ss_pred             EEeccCCCChhh
Q 011189          464 VYEFVSNGTLFH  475 (491)
Q Consensus       464 v~Ey~~~GsL~~  475 (491)
                      |+||+++.+...
T Consensus       113 iFE~v~n~Dfk~  124 (338)
T KOG0668|consen  113 IFEYVNNTDFKQ  124 (338)
T ss_pred             HhhhhccccHHH
Confidence            999998877543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.03  E-value=2e-05  Score=71.87  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=58.3

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccchh------------------------h-HHHHHHHHHHHHHcCCCCcc
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI------------------------R-VSQEFQHEMGIVSQINHKNV  448 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~------------------------~-~~~~f~~E~~~l~~l~H~ni  448 (491)
                      ...||+|++|+||++...+|+.||||.++.....                        . ....+.+|...+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3579999999999999778999999998754210                        0 01234688999999999988


Q ss_pred             ccEEeEEEeCCccEEEEeccCCCChhh
Q 011189          449 VKILGLCLQTKVPLLVYEFVSNGTLFH  475 (491)
Q Consensus       449 v~l~g~~~~~~~~~lv~Ey~~~GsL~~  475 (491)
                      .........  ..+|||||++++++..
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~  106 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPA  106 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchh
Confidence            654443332  3589999999886543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.01  E-value=3.3e-06  Score=78.22  Aligned_cols=94  Identities=21%  Similarity=0.375  Sum_probs=76.8

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-------hhHHHHHHHHHHHHHcC-CCCccccEEeEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-------IRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ  457 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  457 (491)
                      .-..|...+.||+|..+.|.+... ..++..|+|++.....       .+-.++=.+|+.||+++ .||+|++|.+.+..
T Consensus        15 fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes   94 (411)
T KOG0599|consen   15 FYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYES   94 (411)
T ss_pred             HHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccC
Confidence            345566778899999999888775 4578899998764321       12245667899999998 69999999999999


Q ss_pred             CCccEEEEeccCCCChhhhhccC
Q 011189          458 TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       458 ~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ....++|+|.|+.|.|++||.+.
T Consensus        95 ~sF~FlVFdl~prGELFDyLts~  117 (411)
T KOG0599|consen   95 DAFVFLVFDLMPRGELFDYLTSK  117 (411)
T ss_pred             cchhhhhhhhcccchHHHHhhhh
Confidence            99999999999999999999875

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.00  E-value=1.2e-05  Score=75.96  Aligned_cols=75  Identities=16%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             CCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChhhhhc
Q 011189          400 GGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       400 G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  478 (491)
                      |.+|.||++.. .+++.+|+|.++....      +.+|...+....|||++++++.+...+..++++||+++|+|.+++.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   77 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE------YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS   77 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh------hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH
Confidence            88999999985 4678999999875432      3345555556679999999999999999999999999999999987


Q ss_pred             cC
Q 011189          479 SK  480 (491)
Q Consensus       479 ~~  480 (491)
                      ..
T Consensus        78 ~~   79 (237)
T cd05576          78 KF   79 (237)
T ss_pred             Hh
Confidence            54

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=97.99  E-value=3.3e-06  Score=83.38  Aligned_cols=94  Identities=21%  Similarity=0.280  Sum_probs=78.0

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      +.|..-++||+|+||.|+....+ .|+.+|.|++....  ......-.++|-.+|.+++.+.||.|-..+...+.+.||+
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            46777799999999999998854 58888998875432  1122345789999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCCC
Q 011189          466 EFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~~  482 (491)
                      ..|+||||.-+|.+.++
T Consensus       265 tlMNGGDLkfHiyn~g~  281 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGN  281 (591)
T ss_pred             EeecCCceeEEeeccCC
Confidence            99999999999987653

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.99  E-value=2.4e-06  Score=81.14  Aligned_cols=94  Identities=21%  Similarity=0.292  Sum_probs=77.2

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEecccc--chhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEA--DKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~--~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  463 (491)
                      ..+|...++||+|+|++|..+++. ..+.+|+|.+++.  ...+.......|-.++.+. +||.+|.|..|+.....++.
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            357888899999999999999864 5688999987654  2223455666777777766 79999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      |.||+++|+|.-++++++
T Consensus       329 vieyv~ggdlmfhmqrqr  346 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQRQR  346 (593)
T ss_pred             EEEEecCcceeeehhhhh
Confidence            999999999998888764

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=97.94  E-value=3.4e-05  Score=70.84  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=64.7

Q ss_pred             HHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchh---------------------hHHHHHHHHHHHHHc
Q 011189          384 LIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI---------------------RVSQEFQHEMGIVSQ  442 (491)
Q Consensus       384 l~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~---------------------~~~~~f~~E~~~l~~  442 (491)
                      +......|...+.||+|+||.||++..++++.||||.++.....                     .....+.+|..++..
T Consensus        10 ~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   89 (198)
T cd05144          10 LVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKA   89 (198)
T ss_pred             HHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHH
Confidence            33333336667889999999999999878999999986542200                     011236788899999


Q ss_pred             CCCCc--cccEEeEEEeCCccEEEEeccCCCChhhhhc
Q 011189          443 INHKN--VVKILGLCLQTKVPLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       443 l~H~n--iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  478 (491)
                      +.|++  +.+.++    ....++||||+++++|.+.+.
T Consensus        90 l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~  123 (198)
T cd05144          90 LYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRV  123 (198)
T ss_pred             HHHcCCCCCceee----cCCceEEEEEeCCcchhhccc
Confidence            98874  444443    345689999999999877654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.76  E-value=4.4e-06  Score=77.33  Aligned_cols=86  Identities=21%  Similarity=0.478  Sum_probs=71.0

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      .+|.+..-|..|+|++. +..+.+|++.... ..+..++|..|.-.|+-+.||||..++|.|..+..+.++..||+.|+|
T Consensus       196 tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gsl  274 (448)
T KOG0195|consen  196 TKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSL  274 (448)
T ss_pred             hhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHH
Confidence            34777888999999994 5556667765543 223457799998888889999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 011189          474 FHHIHSKS  481 (491)
Q Consensus       474 ~~~L~~~~  481 (491)
                      +..||+..
T Consensus       275 ynvlhe~t  282 (448)
T KOG0195|consen  275 YNVLHEQT  282 (448)
T ss_pred             HHHHhcCc
Confidence            99999864

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=97.72  E-value=2.6e-05  Score=82.55  Aligned_cols=84  Identities=26%  Similarity=0.396  Sum_probs=70.0

Q ss_pred             ccccceeccCCcce-EEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEecc
Q 011189          391 YDKSNFLGEGGFGS-VYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       391 ~~~~~~lG~G~fG~-V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      |...+.+|.|.-|+ ||+|.+ +++.||||++-..    ...-..+|+..|..- +|||||++++.-..+...||.+|.+
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e----~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC  585 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE----FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELC  585 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhH----hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHh
Confidence            34456789999887 799999 7899999998653    224456899999888 6999999999888899999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      . -+|.+++...
T Consensus       586 ~-~sL~dlie~~  596 (903)
T KOG1027|consen  586 A-CSLQDLIESS  596 (903)
T ss_pred             h-hhHHHHHhcc
Confidence            6 5999999974

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.71  E-value=6.6e-06  Score=80.31  Aligned_cols=92  Identities=21%  Similarity=0.233  Sum_probs=71.9

Q ss_pred             ccccccceeccCCcceEEEEEEcC-CcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .+|....+||+|+||+|..+..+. ...+|||+++..-  +....+--+.|-++|.-. +-|.+++|..++..-+.+|.|
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            357777899999999999998653 5689999987542  112233345666666655 568999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+.+|+|.-+|++-
T Consensus       429 MEyvnGGDLMyhiQQ~  444 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQV  444 (683)
T ss_pred             EEEecCchhhhHHHHh
Confidence            9999999999998864

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=97.66  E-value=1.3e-05  Score=75.40  Aligned_cols=90  Identities=26%  Similarity=0.390  Sum_probs=70.0

Q ss_pred             hhcccccc-ceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe----CC
Q 011189          387 ATKNYDKS-NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ----TK  459 (491)
Q Consensus       387 ~t~~~~~~-~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~----~~  459 (491)
                      .+++|.+. ++||-|--|+|.....+ .++.+|+|.+...      +...+|+++.-.. .|||||+++.++..    ..
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rk  132 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS------PKARREVELHWMASGHPHIVSIIDVYENSYQGRK  132 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCce
Confidence            34556543 57999999999998754 5788999998754      3345788765444 69999999998753    45


Q ss_pred             ccEEEEeccCCCChhhhhccCCC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                      -+++|||.|+||.|++.|.+++.
T Consensus       133 cLLiVmE~meGGeLfsriq~~g~  155 (400)
T KOG0604|consen  133 CLLIVMECMEGGELFSRIQDRGD  155 (400)
T ss_pred             eeEeeeecccchHHHHHHHHccc
Confidence            78899999999999999998754

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.65  E-value=0.00013  Score=62.96  Aligned_cols=78  Identities=21%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC--CccccEEeEEEeCCccEEEEeccCCC
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH--KNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      .+.||+|.++.||++...+ ..+++|.......   ...+.+|+.++..++|  ..+.++++.....+..++++||++++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~---~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK---GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc---hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            4679999999999999744 7899998765432   4678899999999976  58889888887778899999999988


Q ss_pred             Chhh
Q 011189          472 TLFH  475 (491)
Q Consensus       472 sL~~  475 (491)
                      .+..
T Consensus        79 ~~~~   82 (155)
T cd05120          79 TLDE   82 (155)
T ss_pred             eccc
Confidence            7753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.57  E-value=0.00011  Score=78.46  Aligned_cols=89  Identities=22%  Similarity=0.334  Sum_probs=59.1

Q ss_pred             hhccccccceeccCCcceEEEEEEcC-----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeE------E
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSD-----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGL------C  455 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~------~  455 (491)
                      ..++|...+.||+|+||.||+|.+.+     +..+|+|++.....   .+.+.+|.  +....+.+++.++..      .
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~---~e~~~~e~--l~~~~~~~~~~~~~~~~~~~~~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA---VEIWMNER--VRRACPNSCADFVYGFLEPVSS  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch---hHHHHHHH--HHhhchhhHHHHHHhhhccccc
Confidence            45678888999999999999999743     68999998764322   12222221  122222222222111      2


Q ss_pred             EeCCccEEEEeccCCCChhhhhccC
Q 011189          456 LQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       456 ~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ...+..+||+||+++++|.++++..
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~  229 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSK  229 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhc
Confidence            3456789999999999999999864

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.57  E-value=1.1e-06  Score=80.39  Aligned_cols=89  Identities=27%  Similarity=0.492  Sum_probs=67.7

Q ss_pred             ccccceeccCCcceEEEEEEc-CCcEEEEEecc-ccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--------Cc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--------KV  460 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~-~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------~~  460 (491)
                      |....+||+|.||.|++++.+ .++.||+|++. ...+.+.....++|+.+|..++|+|++.|+..|...        ..
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            444567999999999999854 56778888743 222223446678999999999999999998887532        25


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .+||++++++ ||.-+|.+.
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~  117 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNR  117 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCc
Confidence            7899999985 888887765

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.57  E-value=5.3e-05  Score=74.42  Aligned_cols=91  Identities=20%  Similarity=0.318  Sum_probs=76.6

Q ss_pred             HhhccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      ...+.|...++||+|.|+.||++...    ..+.||+|.+.....   .....+|+++|..+ -+.||+++.++....+.
T Consensus        33 ~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~---p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~  109 (418)
T KOG1167|consen   33 FISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS---PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQ  109 (418)
T ss_pred             hhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC---chHHHHHHHHHHHhccchhhhcchhhhccCCe
Confidence            34566788899999999999999853    467899999877644   25578999999999 48999999999999999


Q ss_pred             cEEEEeccCCCChhhhhcc
Q 011189          461 PLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ..+|+||+++-+-.+++.+
T Consensus       110 v~ivlp~~~H~~f~~l~~~  128 (418)
T KOG1167|consen  110 VAIVLPYFEHDRFRDLYRS  128 (418)
T ss_pred             eEEEecccCccCHHHHHhc
Confidence            9999999998887777664

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.57  E-value=0.00012  Score=73.39  Aligned_cols=89  Identities=24%  Similarity=0.345  Sum_probs=72.1

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-----C---CccccEEeEEEeC-
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-----H---KNVVKILGLCLQT-  458 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-----H---~niv~l~g~~~~~-  458 (491)
                      .+|...++||=|.|.+||.+. ..+.+.||+|+.+...  ...+..+.|+.+|.+++     |   ..||+|+..+... 
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq--hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ--HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh--HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            456777899999999999998 4567899999987653  35678899999999884     2   4789999998754 


Q ss_pred             ---CccEEEEeccCCCChhhhhccC
Q 011189          459 ---KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 ---~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                         .+.+||+|++ |-+|..+|+..
T Consensus       156 pNG~HVCMVfEvL-GdnLLklI~~s  179 (590)
T KOG1290|consen  156 PNGQHVCMVFEVL-GDNLLKLIKYS  179 (590)
T ss_pred             CCCcEEEEEehhh-hhHHHHHHHHh
Confidence               3788999999 56799988864

>smart00090 RIO RIO-like kinase

Probab=97.52  E-value=0.00021  Score=67.61  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             cccccceeccCCcceEEEEE--EcCCcEEEEEeccccchh----------------------h-HHHHHHHHHHHHHcCC
Q 011189          390 NYDKSNFLGEGGFGSVYRGV--LSDDTQVAVKKPKEADKI----------------------R-VSQEFQHEMGIVSQIN  444 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~--~~~~~~vavK~l~~~~~~----------------------~-~~~~f~~E~~~l~~l~  444 (491)
                      .|...+.||+|++|.||++.  ..+++.||+|.++.....                      . ....+.+|+.++.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46677889999999999998  568999999987643210                      0 1133668999999997


Q ss_pred             CCc--cccEEeEEEeCCccEEEEeccCCCChhhhh
Q 011189          445 HKN--VVKILGLCLQTKVPLLVYEFVSNGTLFHHI  477 (491)
Q Consensus       445 H~n--iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L  477 (491)
                      +..  +.++++.    ...+|||||+++++|..++
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~  139 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPR  139 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccc
Confidence            633  3344432    2358999999998887665

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.44  E-value=0.00067  Score=62.19  Aligned_cols=80  Identities=10%  Similarity=0.044  Sum_probs=60.0

Q ss_pred             ccceeccCCcceEEEEEEcCCcEEEEEeccccch---hhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEecc
Q 011189          393 KSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK---IRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ....|++|+||+|+...- .+..++.+.+.....   .-....|.+|+++|.+++ |+++.+++++    +..+++|||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            356799999999996655 677777776655432   111235889999999995 5889999875    4468999999


Q ss_pred             CCCChhhhh
Q 011189          469 SNGTLFHHI  477 (491)
Q Consensus       469 ~~GsL~~~L  477 (491)
                      ++.+|.+.+
T Consensus        81 ~G~~L~~~~   89 (218)
T PRK12274         81 AGAAMYQRP   89 (218)
T ss_pred             cCccHHhhh
Confidence            999987654

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=97.39  E-value=0.00011  Score=71.39  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=74.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC--C----ccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH--K----NVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H--~----niv~l~g~~~~~~~  460 (491)
                      +.+|.....+|+|.||+|.+...+ .+..||+|+++.-..  ..++.+-|++++.++.+  |    -+|.+.+++.-.+.
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k--YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK--YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHH--HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            567888889999999999998743 468999999987654  45777889999999943  2    25777788888899


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+||+|.| +-++.++|+.++
T Consensus       166 iCivfell-G~S~~dFlk~N~  185 (415)
T KOG0671|consen  166 ICIVFELL-GLSTFDFLKENN  185 (415)
T ss_pred             eEEEEecc-ChhHHHHhccCC
Confidence            99999988 459999999864

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.35  E-value=0.00018  Score=75.49  Aligned_cols=55  Identities=45%  Similarity=1.045  Sum_probs=46.8

Q ss_pred             CCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCCcc
Q 011189          265 GEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDGKV  323 (491)
Q Consensus       265 ~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~~~  323 (491)
                      ++.|.|.|.+||.|+..+ |.|++||+.   .-|  ...|.|++|++.|.|.+||+||+..
T Consensus       806 gs~y~C~CLPGfsGDG~~-c~dvDeC~p---srChp~A~CyntpgsfsC~C~pGy~GDGf~  862 (1289)
T KOG1214|consen  806 GSTYSCACLPGFSGDGHQ-CTDVDECSP---SRCHPAATCYNTPGSFSCRCQPGYYGDGFQ  862 (1289)
T ss_pred             CceEEEeecCCccCCccc-cccccccCc---cccCCCceEecCCCcceeecccCccCCCce
Confidence            467999999999999986 888899973   245  5689999999999999999998643

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.33  E-value=0.00038  Score=71.95  Aligned_cols=85  Identities=19%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhH-----------------------------H----------HHHHH
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRV-----------------------------S----------QEFQH  435 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~-----------------------------~----------~~f~~  435 (491)
                      +.||.|++|+||+|++++|+.||||..++......                             .          -+|.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            67999999999999999999999999765421000                             0          02555


Q ss_pred             HHHHHHcC----CCCccccEEeEEE-eCCccEEEEeccCCCChhhhhcc
Q 011189          436 EMGIVSQI----NHKNVVKILGLCL-QTKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       436 E~~~l~~l----~H~niv~l~g~~~-~~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      |+..+.++    +|.+-+..-..+. .....+|||||+++++|.+++..
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~  251 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAAL  251 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHH
Confidence            66555554    2333333333332 24467899999999999887653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=97.31  E-value=0.00015  Score=64.87  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHc-CCCCccccEEeEEEeCCccEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ-INHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ..+.+.....||+|++|.|-+-++ .+|+..|+|+++..-..+..++.++|+.+..+ ...|.+|+++|........+|-
T Consensus        44 ~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIc  123 (282)
T KOG0984|consen   44 PADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWIC  123 (282)
T ss_pred             chhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEe
Confidence            334444456799999999988775 47899999999876554667888999987655 4789999999999888899999


Q ss_pred             EeccCCCChhhhhc
Q 011189          465 YEFVSNGTLFHHIH  478 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~  478 (491)
                      ||.|. .+|..+-+
T Consensus       124 ME~M~-tSldkfy~  136 (282)
T KOG0984|consen  124 MELMD-TSLDKFYR  136 (282)
T ss_pred             HHHhh-hhHHHHHH
Confidence            99996 47766544

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.30  E-value=0.00019  Score=40.91  Aligned_cols=23  Identities=52%  Similarity=1.107  Sum_probs=19.9

Q ss_pred             CeeeeeCCCCccCCCC-CcccCcc
Q 011189          267 GYRCLCKPGFQGNPYL-GCHDIDE  289 (491)
Q Consensus       267 g~~C~C~~G~~gn~~~-gC~~~~~  289 (491)
                      +|+|.|++||+-++.. .|.||+|
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            5899999999987765 8999886

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.29  E-value=0.00096  Score=65.17  Aligned_cols=89  Identities=19%  Similarity=0.265  Sum_probs=57.3

Q ss_pred             ccccccceeccCCcceEEEEEEcCC----cEEEEEeccccchhhH----------HHHHHHHHHHHHcCCCCccccEEeE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRV----------SQEFQHEMGIVSQINHKNVVKILGL  454 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~----~~vavK~l~~~~~~~~----------~~~f~~E~~~l~~l~H~niv~l~g~  454 (491)
                      ++|...++||+|+||+||++...++    ..+++|..........          ......+...+..++|+|+++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            5688889999999999999986543    4566665332221100          1123344455667899999999998


Q ss_pred             EEeCC----ccEEEEeccCCCChhhhhc
Q 011189          455 CLQTK----VPLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       455 ~~~~~----~~~lv~Ey~~~GsL~~~L~  478 (491)
                      .....    ..++++|++. .++.+.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~  118 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV-ENTKEIFK  118 (294)
T ss_pred             eeEecCCceEEEEEEehhc-cCHHHHHH
Confidence            76544    3467788764 35555554

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.27  E-value=0.00041  Score=63.61  Aligned_cols=87  Identities=18%  Similarity=0.324  Sum_probs=69.2

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC-CccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH-KNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..|...+.||.|+||.+|.|. ..+|..||||.-+....   ...+..|..+.+.++| ..|..+..+..+...-.||||
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~---hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK---HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC---CcchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            467888999999999999998 56899999998554322   2457789999999976 566667777778888899999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      .+ +.+|.++..-
T Consensus        92 LL-GPsLEdLfnf  103 (341)
T KOG1163|consen   92 LL-GPSLEDLFNF  103 (341)
T ss_pred             cc-CccHHHHHHH
Confidence            88 6788887653

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.15  E-value=5e-05  Score=70.50  Aligned_cols=89  Identities=21%  Similarity=0.315  Sum_probs=69.5

Q ss_pred             cccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----CccEEE
Q 011189          392 DKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KVPLLV  464 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~~lv  464 (491)
                      +..+.||-|+||.||.... ++++.||.|++...- .....+.+.+|+.+|.-.+|.|++.+++.-...     ++.|++
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            3457899999999998874 578999999875432 223457899999999999999999998876543     367788


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +|.|. .||.+.|.+..
T Consensus       136 TELmQ-SDLHKIIVSPQ  151 (449)
T KOG0664|consen  136 TELMQ-SDLHKIIVSPQ  151 (449)
T ss_pred             HHHHH-hhhhheeccCC
Confidence            99884 58888877653

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=97.15  E-value=0.00069  Score=63.26  Aligned_cols=75  Identities=17%  Similarity=0.316  Sum_probs=64.9

Q ss_pred             ceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEeccC
Q 011189          395 NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      ..||.|..|+||+..++ .+..+|||.++.....++.++.+..+.++.+-+ .|.||+.+|++......++-||.|.
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            45999999999999864 578999999988776567788888998877765 8999999999999999999999884

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.14  E-value=0.0022  Score=62.28  Aligned_cols=88  Identities=30%  Similarity=0.427  Sum_probs=73.1

Q ss_pred             ccccceeccCCcceEEEEEEcCCcEEEEEeccccchhh--HHHHHHHHHHHHHcCCCC-ccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIR--VSQEFQHEMGIVSQINHK-NVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~--~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      |...+.||.|+|+.||++...  ..+++|.+.......  ....|.+|+.++..+.|+ +++++..........++++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            345577999999999999975  788999887654322  467899999999999988 799999999766678999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +.+++|.++++..
T Consensus        80 ~~~~~l~~~~~~~   92 (384)
T COG0515          80 VDGGSLEDLLKKI   92 (384)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999777754

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.13  E-value=0.00046  Score=72.55  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=58.0

Q ss_pred             ccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhh-----------------------------H----HH---
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIR-----------------------------V----SQ---  431 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~-----------------------------~----~~---  431 (491)
                      ..|+. +.||.|++|+||++++++ |+.||||.+++.-...                             .    .+   
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34555 689999999999999987 9999999987542100                             0    01   


Q ss_pred             ---HHHHHHHHHHcCC----CCccccEEeEEEe-CCccEEEEeccCCCChhhh
Q 011189          432 ---EFQHEMGIVSQIN----HKNVVKILGLCLQ-TKVPLLVYEFVSNGTLFHH  476 (491)
Q Consensus       432 ---~f~~E~~~l~~l~----H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~  476 (491)
                         +|.+|+.-+.+++    +.+.+.+-.++.+ ....+|||||++|+.|.++
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence               1445554444442    4444444444433 4567899999999999774

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=97.08  E-value=5.1e-05  Score=76.18  Aligned_cols=92  Identities=18%  Similarity=0.287  Sum_probs=75.7

Q ss_pred             cccccceeccCCcceEEEEEEcCCc-EEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDDT-QVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~~-~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++.....||-|+||.|-....+... .+|+|.++...  +....+....|-.+|.+.+.+.||+|+--+...+..|++||
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHH
Confidence            3444456999999999998875443 48888887653  22445778899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      -+-+|.|+..|+.++
T Consensus       501 aClGGElWTiLrdRg  515 (732)
T KOG0614|consen  501 ACLGGELWTILRDRG  515 (732)
T ss_pred             hhcCchhhhhhhhcC
Confidence            999999999999764

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=97.03  E-value=0.00028  Score=65.69  Aligned_cols=91  Identities=19%  Similarity=0.357  Sum_probs=70.1

Q ss_pred             hccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEE-EeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLC-LQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~-~~~~~~~lv  464 (491)
                      .+.|.+.+.||+|.||.+..++++. .+.+++|.+.....  ...+|.+|..---.| .|.||+.-+..- ...+....+
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t--t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~  100 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT--TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV  100 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh--hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence            4567778899999999999999764 56788888765432  457899998654455 589999877664 445667799


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||+|.|||.+-+...
T Consensus       101 qE~aP~gdL~snv~~~  116 (378)
T KOG1345|consen  101 QEFAPRGDLRSNVEAA  116 (378)
T ss_pred             eccCccchhhhhcCcc
Confidence            9999999999877653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.01  E-value=0.00064  Score=61.48  Aligned_cols=75  Identities=23%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccchh-hHHHH----------------------HHHHHHHHHcCCCCc--c
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-RVSQE----------------------FQHEMGIVSQINHKN--V  448 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~-~~~~~----------------------f~~E~~~l~~l~H~n--i  448 (491)
                      .+.||+|+||+||++...+++.||||.++..... .....                      ...|...+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            3579999999999999878999999987653210 11111                      134555566654432  3


Q ss_pred             ccEEeEEEeCCccEEEEeccCCCC
Q 011189          449 VKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       449 v~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .+.++.    ...++||||+++++
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~  101 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDG  101 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCC
Confidence            444432    34689999999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.00035  Score=77.08  Aligned_cols=100  Identities=24%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             HHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC---CCccccEEeEEEeCC
Q 011189          383 ELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN---HKNVVKILGLCLQTK  459 (491)
Q Consensus       383 el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~  459 (491)
                      +++.....|.+.+.||+|+||+||+|...+++.||+|.-++...    -+|-.-..++.+|+   -+.|+.+..+....+
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~----WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~  767 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP----WEFYICLQVMERLKPQMLPSIMHISSAHVFQN  767 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc----eeeeehHHHHHhhchhhhcchHHHHHHHccCC
Confidence            34444566778889999999999999988899999998766432    22323333344444   234455555556667


Q ss_pred             ccEEEEeccCCCChhhhhccCCCCcccccc
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      .-+||+||.+.|+|.+++...   ...+|.
T Consensus       768 ~S~lv~ey~~~Gtlld~~N~~---~~m~e~  794 (974)
T KOG1166|consen  768 ASVLVSEYSPYGTLLDLINTN---KVMDEY  794 (974)
T ss_pred             cceeeeeccccccHHHhhccC---CCCCch
Confidence            778999999999999999843   346664

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.70  E-value=0.0073  Score=57.14  Aligned_cols=85  Identities=8%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             ceec-cCCcceEEEEEEcCCcEEEEEeccccc------------hhhHHHHHHHHHHHHHcCCCCcc--ccEEeEEEeCC
Q 011189          395 NFLG-EGGFGSVYRGVLSDDTQVAVKKPKEAD------------KIRVSQEFQHEMGIVSQINHKNV--VKILGLCLQTK  459 (491)
Q Consensus       395 ~~lG-~G~fG~V~~g~~~~~~~vavK~l~~~~------------~~~~~~~f~~E~~~l~~l~H~ni--v~l~g~~~~~~  459 (491)
                      ..|| .|+.|+||+... .+..+++|......            .......+.+|++++.+++|+++  ++.++......
T Consensus        37 ~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5687 899999999987 47788888764321            01223568899999999998875  67777654432


Q ss_pred             ----ccEEEEeccCC-CChhhhhccC
Q 011189          460 ----VPLLVYEFVSN-GTLFHHIHSK  480 (491)
Q Consensus       460 ----~~~lv~Ey~~~-GsL~~~L~~~  480 (491)
                          ..+||+||+++ .+|.+++...
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~  141 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEA  141 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcC
Confidence                23599999997 6898888653

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.69  E-value=0.00034  Score=46.55  Aligned_cols=32  Identities=56%  Similarity=1.195  Sum_probs=27.1

Q ss_pred             cCccccccCCCCc--cCcCcCCCCCccccCCCCCC
Q 011189          286 DIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMH  318 (491)
Q Consensus       286 ~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~  318 (491)
                      |++||.... ..|  .+.|.|+.|+|.|.|++||.
T Consensus         1 DidEC~~~~-~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGP-HNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTS-SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCC-CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            688997643 566  48999999999999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.68  E-value=0.0032  Score=58.31  Aligned_cols=83  Identities=18%  Similarity=0.311  Sum_probs=62.8

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC--CccccEEeEEEeCC---ccEEEEeccC
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH--KNVVKILGLCLQTK---VPLLVYEFVS  469 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~---~~~lv~Ey~~  469 (491)
                      +.|+.|..+.+|+....++..+++|.............+.+|++++..+++  .++.+++.......   ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            568999999999999866688999987654321234568899999999976  34567777665532   5689999999


Q ss_pred             CCChhhhh
Q 011189          470 NGTLFHHI  477 (491)
Q Consensus       470 ~GsL~~~L  477 (491)
                      +.+|.+.+
T Consensus        84 G~~l~~~~   91 (223)
T cd05154          84 GRVLRDRL   91 (223)
T ss_pred             CEecCCCC
Confidence            99887765

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.64  E-value=0.0047  Score=61.29  Aligned_cols=89  Identities=19%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             cccccceeccCCcceEEEEEEcCC--cEEEEEeccccchhhHHHHHHHHHHHHHcCCC----CccccEEeEE-EeCCccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINH----KNVVKILGLC-LQTKVPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~~--~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H----~niv~l~g~~-~~~~~~~  462 (491)
                      +|...+.||+|+||.||.+.....  ..+|+|.......... ..+..|..++..+.+    +++.+++... ......+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~-~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~   97 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP-SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNF   97 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCC-ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeE
Confidence            788889999999999999986443  4788887655432122 267788888888863    5777888777 4666889


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      |||+.+ +-+|.++.+..
T Consensus        98 iVM~l~-G~sL~dl~~~~  114 (322)
T KOG1164|consen   98 IVMSLL-GPSLEDLRKRN  114 (322)
T ss_pred             EEEecc-CccHHHHHHhC
Confidence            999977 77999977544

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.52  E-value=0.0036  Score=60.20  Aligned_cols=86  Identities=19%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             ccccccceeccCCcceEEEEE-EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      -+|...++||+|.||.++.|+ +-+++.||||.-....   ...++..|.+..+.|. -+.|...+.+-.++.+-.||+|
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS---~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVid  104 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS---EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVID  104 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC---CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhh
Confidence            367888999999999999998 5589999999743332   2344566777777774 5888888887788888899999


Q ss_pred             ccCCCChhhhhc
Q 011189          467 FVSNGTLFHHIH  478 (491)
Q Consensus       467 y~~~GsL~~~L~  478 (491)
                      .+ +-+|.++..
T Consensus       105 LL-GPSLEDLFD  115 (449)
T KOG1165|consen  105 LL-GPSLEDLFD  115 (449)
T ss_pred             hh-CcCHHHHHH
Confidence            88 678887755

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.42  E-value=0.0017  Score=67.27  Aligned_cols=89  Identities=31%  Similarity=0.397  Sum_probs=70.2

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++.|.....+|.|+|+.|-.+.. ..++..++|++.....     +-.+|+.++... +|+||+++.+.+....+.++||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~-----~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~  395 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD-----DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVM  395 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccccc-----ccccccchhhhhcCCCcceeecceecCCceeeeee
Confidence            34555556699999999998875 4678899999876521     123566555544 7999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      |.+.+|-|.+.|....
T Consensus       396 e~l~g~ell~ri~~~~  411 (612)
T KOG0603|consen  396 ELLDGGELLRRIRSKP  411 (612)
T ss_pred             hhccccHHHHHHHhcc
Confidence            9999999998887653

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.31  E-value=0.0028  Score=40.39  Aligned_cols=29  Identities=34%  Similarity=0.996  Sum_probs=22.7

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPY  281 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~  281 (491)
                      ..|..++.|.+...  .|.|.|++||.||.+
T Consensus         6 ~~C~~nA~C~~~~~--~~~C~C~~Gy~GdG~   34 (36)
T PF12947_consen    6 GGCHPNATCTNTGG--SYTCTCKPGYEGDGF   34 (36)
T ss_dssp             GGS-TTCEEEE-TT--SEEEEE-CEEECCST
T ss_pred             CCCCCCcEeecCCC--CEEeECCCCCccCCc
Confidence            46888999998764  899999999999986

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=96.24  E-value=0.0025  Score=64.58  Aligned_cols=91  Identities=19%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC------CCccccEEeEEEeCCcc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN------HKNVVKILGLCLQTKVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~------H~niv~l~g~~~~~~~~  461 (491)
                      .+|......|+|-|++|.++.. ..+..||||+++....  -.+.=++|+++|.+|+      .-+.++|+..+....++
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~--M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHL  509 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV--MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHL  509 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH--HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhccee
Confidence            4566666789999999999983 4577999999987543  2356678999999995      35789999999999999


Q ss_pred             EEEEeccCCCChhhhhccCCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                      +||+|-+. -+|.+.|+.-+.
T Consensus       510 ClVFE~Ls-lNLRevLKKyG~  529 (752)
T KOG0670|consen  510 CLVFEPLS-LNLREVLKKYGR  529 (752)
T ss_pred             EEEehhhh-chHHHHHHHhCc
Confidence            99999774 589999986543

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=96.07  E-value=0.006  Score=70.85  Aligned_cols=64  Identities=30%  Similarity=0.809  Sum_probs=49.3

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .-|...+.|.... ++||.|+|+.-|.|+-..  .+.+.|..   .+|  +|.|.-..++|.|.||.||.|.
T Consensus      3870 npCqhgG~C~~~~-~ggy~CkCpsqysG~~CE--i~~epC~s---nPC~~GgtCip~~n~f~CnC~~gyTG~ 3935 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQP-KGGYKCKCPSQYSGNHCE--IDLEPCAS---NPCLTGGTCIPFYNGFLCNCPNGYTGK 3935 (4289)
T ss_pred             CcccCCCEecCCC-CCceEEeCcccccCcccc--cccccccC---CCCCCCCEEEecCCCeeEeCCCCccCc
Confidence            4688888997554 469999999999998633  23445642   355  7899988999999999999874

>cd05151 ChoK Choline Kinase (ChoK)

Probab=95.74  E-value=0.025  Score=49.99  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccc-cEEeEEEeCCccEEEEeccCCCCh
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV-KILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv-~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      +.|+.|.++.||+... .+..+++|.......  ....+.+|+.++..+.+.+++ +++...  .+..++||||+++.++
T Consensus         4 ~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l   78 (170)
T cd05151           4 SPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE--LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSEL   78 (170)
T ss_pred             eecCCcccCceEEEEE-CCeEEEEEeCCCCcc--cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcc
Confidence            5688999999999987 477899998765432  123467888888888665554 444432  3346899999999888


Q ss_pred             hh
Q 011189          474 FH  475 (491)
Q Consensus       474 ~~  475 (491)
                      .+
T Consensus        79 ~~   80 (170)
T cd05151          79 LT   80 (170)
T ss_pred             cc
Confidence            64

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG4260 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.022  Score=52.81  Aligned_cols=37  Identities=35%  Similarity=0.813  Sum_probs=29.2

Q ss_pred             CcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCC
Q 011189          283 GCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       283 gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      ||.|++||.. ...+|  +.+|.|+.|+|.|.++.||...
T Consensus       232 gCvDvnEC~~-ep~~c~~~qfCvNteGSf~C~dk~Gy~~g  270 (350)
T KOG4260|consen  232 GCVDVNECQN-EPAPCKAHQFCVNTEGSFKCEDKEGYKKG  270 (350)
T ss_pred             ccccHHHHhc-CCCCCChhheeecCCCceEecccccccCC
Confidence            5567888864 24566  6799999999999999998873

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]

Probab=95.00  E-value=0.014  Score=65.17  Aligned_cols=50  Identities=44%  Similarity=1.123  Sum_probs=40.3

Q ss_pred             CCeeeeeCCCCccCCCCCc-ccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          266 EGYRCLCKPGFQGNPYLGC-HDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       266 ~g~~C~C~~G~~gn~~~gC-~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|.+|.|++||.|+-   | ..+++|-+   .+|  ++.|....|+|+|.|.++|.|..
T Consensus      1220 nglrCrCPpGFTgd~---CeTeiDlCYs---~pC~nng~C~srEggYtCeCrpg~tGeh 1272 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDY---CETEIDLCYS---GPCGNNGRCRSREGGYTCECRPGFTGEH 1272 (2531)
T ss_pred             CceeEeCCCCCCccc---ccchhHhhhc---CCCCCCCceEEecCceeEEecCCccccc
Confidence            689999999999993   4 34667732   355  78899999999999999998863

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.96  E-value=0.014  Score=36.20  Aligned_cols=27  Identities=37%  Similarity=0.989  Sum_probs=22.9

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      .|..++.|.+.. ..+|.|.|++||.|.
T Consensus         5 ~C~n~g~C~~~~-~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLP-GGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEES-TSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCC-CCCEEeECCCCCccC
Confidence            688889998776 468999999999984

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=94.94  E-value=0.0089  Score=57.26  Aligned_cols=88  Identities=23%  Similarity=0.298  Sum_probs=63.6

Q ss_pred             cccccceeccCCcceEEEEE-EcCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------cc
Q 011189          390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------VP  461 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~-~~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~  461 (491)
                      +|.....+|.|.- .|-.+. .-.++.||+|++... ......++..+|..++..++|+|+++++.++...+      +.
T Consensus        18 Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~   96 (369)
T KOG0665|consen   18 RYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEV   96 (369)
T ss_pred             eeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhH
Confidence            4555566777766 444443 124788999986433 22234567789999999999999999999987543      67


Q ss_pred             EEEEeccCCCChhhhhcc
Q 011189          462 LLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~  479 (491)
                      ++|||||. ++|.+.++.
T Consensus        97 y~v~e~m~-~nl~~vi~~  113 (369)
T KOG0665|consen   97 YLVMELMD-ANLCQVILM  113 (369)
T ss_pred             HHHHHhhh-hHHHHHHHH
Confidence            89999996 688888774

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=94.66  E-value=0.029  Score=59.61  Aligned_cols=66  Identities=30%  Similarity=0.754  Sum_probs=51.3

Q ss_pred             CcCCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCC
Q 011189          250 VYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMH  318 (491)
Q Consensus       250 ~~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~  318 (491)
                      +..|..+..|...+. ..|.|.|..||.|++.. |.+.+||.. ....|  +..|.|.+|+|+|.|..++.
T Consensus       699 sh~cdt~a~C~pg~~-~~~tcecs~g~~gdgr~-c~d~~eca~-~~~~CGp~s~Cin~pg~~rceC~~gy~  766 (1289)
T KOG1214|consen  699 SHMCDTTARCHPGTG-VDYTCECSSGYQGDGRN-CVDENECAT-GFHRCGPNSVCINLPGSYRCECRSGYE  766 (1289)
T ss_pred             CcccCCCccccCCCC-cceEEEEeeccCCCCCC-CCChhhhcc-CCCCCCCCceeecCCCceeEEEeecce
Confidence            345667777865543 47999999999999975 889999954 34456  56899999999999987765

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=94.06  E-value=0.12  Score=54.15  Aligned_cols=83  Identities=17%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhH-----------------------------HH----------HHHH
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRV-----------------------------SQ----------EFQH  435 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~-----------------------------~~----------~f~~  435 (491)
                      +.|+.++.|+||+|++++|+.||||..++.-....                             .+          +|.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            56999999999999999999999998765422110                             00          1445


Q ss_pred             HHHHHHcC----CCCccccEEeEEEe-CCccEEEEeccCCCChhhhh
Q 011189          436 EMGIVSQI----NHKNVVKILGLCLQ-TKVPLLVYEFVSNGTLFHHI  477 (491)
Q Consensus       436 E~~~l~~l----~H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~L  477 (491)
                      |+.-+.++    ++..-++.-.++++ .....|+|||++|-.+.+..
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~  257 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIA  257 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHH
Confidence            55555444    23333444444443 66788999999998888874

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=94.00  E-value=0.15  Score=45.36  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCcccc-EEeEEEeCCccEEEEeccCCCC
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK-ILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~-l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .+.|++|.++.||++.+ .+..+|+|.-+..+   .+..+..|++++..+.-.++.. ++.+    +.-++.|||+.|-.
T Consensus        27 ~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~ds---~r~~l~kEakiLeil~g~~~~p~vy~y----g~~~i~me~i~G~~   98 (201)
T COG2112          27 EKELAKGTTSVVYLGEW-RGGEVALKVRRRDS---PRRNLEKEAKILEILAGEGVTPEVYFY----GEDFIRMEYIDGRP   98 (201)
T ss_pred             hhhhhcccccEEEEeec-cCceEEEEEecCCc---chhhHHHHHHHHHHhhhcCCCceEEEe----chhhhhhhhhcCcc
Confidence            46799999999999999 45688888766543   3467889999999888766654 3322    22345599998877


Q ss_pred             hhhhh
Q 011189          473 LFHHI  477 (491)
Q Consensus       473 L~~~L  477 (491)
                      |.+.-
T Consensus        99 L~~~~  103 (201)
T COG2112          99 LGKLE  103 (201)
T ss_pred             hhhhh
Confidence            76543

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=93.53  E-value=0.06  Score=35.63  Aligned_cols=28  Identities=36%  Similarity=0.873  Sum_probs=22.8

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      ..|..++.|.|..  ++|+|.|++||+.++
T Consensus        10 ~~C~~~~~C~N~~--Gsy~C~C~~Gy~~~~   37 (42)
T PF07645_consen   10 HNCPENGTCVNTE--GSYSCSCPPGYELND   37 (42)
T ss_dssp             SSSSTTSEEEEET--TEEEEEESTTEEECT
T ss_pred             CcCCCCCEEEcCC--CCEEeeCCCCcEECC
Confidence            4687889999866  589999999998443

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal

Probab=93.10  E-value=0.13  Score=40.94  Aligned_cols=40  Identities=30%  Similarity=0.919  Sum_probs=33.7

Q ss_pred             CCceEEEEEeccCCCCCCCCCCCcCCC-CCCeeecCCCCCCeeeeeCCC
Q 011189          228 SSNAKIEWVVKEGKCPDDQNSNVYRCG-DNTNCDYSENGEGYRCLCKPG  275 (491)
Q Consensus       228 ~~~~~l~W~i~~~~C~~~~~~~~~~C~-~~~~C~~~~~~~g~~C~C~~G  275 (491)
                      ..+++|+|.+....|.        +|. +.+.|.+......+.|.|++|
T Consensus        53 ~~GF~L~w~~~~~~C~--------~C~~SgG~Cgy~~~~~~f~C~C~dg   93 (94)
T PF14380_consen   53 KKGFELEWNADSGDCR--------ECEASGGRCGYDSNSEQFTCFCSDG   93 (94)
T ss_pred             hcCcEEEEeCCCCcCc--------ChhcCCCEeCCCCCCceEEEECCCC
Confidence            6899999998777886        787 788998777667889999987

>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation

Probab=92.89  E-value=0.15  Score=41.74  Aligned_cols=40  Identities=28%  Similarity=0.729  Sum_probs=30.6

Q ss_pred             EEEEEeccCCCCCCCCCCCcCCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          232 KIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       232 ~l~W~i~~~~C~~~~~~~~~~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      .+.|..+.+.|+...     .|+.++.|...   ....|.|.+||+.+
T Consensus        70 ~~~~~~p~d~Cd~y~-----~CG~~g~C~~~---~~~~C~Cl~GF~P~  109 (110)
T PF00954_consen   70 SVFWSAPKDQCDVYG-----FCGPNGICNSN---NSPKCSCLPGFEPK  109 (110)
T ss_pred             EEEEEecccCCCCcc-----ccCCccEeCCC---CCCceECCCCcCCC
Confidence            467888888898643     89999999532   24569999999853

This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=92.51  E-value=0.12  Score=33.21  Aligned_cols=30  Identities=53%  Similarity=1.197  Sum_probs=23.1

Q ss_pred             CccccccCCCCc--cCcCcCCCCCccccCCCCCC
Q 011189          287 IDECKEKERYHC--EGTCKNTFGNYTCDCPIGMH  318 (491)
Q Consensus       287 ~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~  318 (491)
                      +++|...  ..|  .+.|.++.++|.|.|+.+|.
T Consensus         2 ~~~C~~~--~~C~~~~~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179        2 IDECASG--NPCQNGGTCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             cccCcCC--CCcCCCCEeECCCCCeEeECCCCCc
Confidence            5666532  345  44899999999999999997

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=92.50  E-value=0.069  Score=44.49  Aligned_cols=31  Identities=29%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccc
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD  425 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~  425 (491)
                      +.|+.|+.|+||+|++++|+.||||..++.-
T Consensus        17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP~i   47 (119)
T PF03109_consen   17 EPLASASIAQVHRARLKDGEEVAVKVQRPGI   47 (119)
T ss_pred             chhhheehhhheeeeecccchhhhhhcchHH
Confidence            6799999999999999999999999987653

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=92.03  E-value=0.073  Score=43.58  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             ccccccCCCCc-cCcCcC--CCCCccccCCCCCCCCCc
Q 011189          288 DECKEKERYHC-EGTCKN--TFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       288 ~~C~~~~~~~c-~~~C~n--~~g~~~C~C~~g~~~~~~  322 (491)
                      .+|.+....-| +|.|.-  ....+.|.|+.||.|.-.
T Consensus        43 ~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYtGeRC   80 (139)
T PHA03099         43 RLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRC   80 (139)
T ss_pred             ccCChhhCCEeECCEEEeeccCCCceeECCCCcccccc
Confidence            34444333344 556643  235678999999998743

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=91.94  E-value=0.21  Score=31.03  Aligned_cols=26  Identities=35%  Similarity=1.096  Sum_probs=21.8

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      .|..++.|.+..  ++|.|.|+.||.|+
T Consensus         7 ~C~~~~~C~~~~--~~~~C~C~~g~~g~   32 (36)
T cd00053           7 PCSNGGTCVNTP--GSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCEEecCC--CCeEeECCCCCccc
Confidence            577788898765  47999999999987

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=91.85  E-value=0.14  Score=43.73  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=24.0

Q ss_pred             cccceeeheecchhhhhhhhhheeeeEeecccccccccCCccee
Q 011189          328 FRITTIAAVIGAAIFTVTVGILAFIACRERRKKRNFFNNGGMIL  371 (491)
Q Consensus       328 ~~~~~i~iiv~~~~~~~~l~~~~~~~~~~~rk~~~~~~~~~~~~  371 (491)
                      .+.++|.++||+++.+++++++++|+++.|+|++.+...++...
T Consensus        47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvv   90 (154)
T PF04478_consen   47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVV   90 (154)
T ss_pred             CccEEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEE
Confidence            34567777888776666554444444433444445555455443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=91.53  E-value=0.039  Score=35.09  Aligned_cols=26  Identities=38%  Similarity=0.805  Sum_probs=20.9

Q ss_pred             CCCccCcCcCCCCCccccCCCCCCCC
Q 011189          295 RYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       295 ~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +..|...|.+++++|.|.|+.||..+
T Consensus         5 NGgC~h~C~~~~g~~~C~C~~Gy~L~   30 (36)
T PF14670_consen    5 NGGCSHICVNTPGSYRCSCPPGYKLA   30 (36)
T ss_dssp             GGGSSSEEEEETTSEEEE-STTEEE-
T ss_pred             CCCcCCCCccCCCceEeECCCCCEEC
Confidence            45688899999999999999998753

...

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]

Probab=91.50  E-value=0.19  Score=56.76  Aligned_cols=66  Identities=33%  Similarity=0.761  Sum_probs=41.5

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcC-CCCCccccCCCCCCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKN-TFGNYTCDCPIGMHG  319 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n-~~g~~~C~C~~g~~~  319 (491)
                      ..|++|+.|...  .+||.|.|.+||.|.-..-=.....|.+ .-....+.|.| ..|++.|.||.|-..
T Consensus      1245 ~pC~nng~C~sr--EggYtCeCrpg~tGehCEvs~~agrCvp-GvC~nggtC~~~~nggf~c~Cp~ge~e 1311 (2531)
T KOG4289|consen 1245 GPCGNNGRCRSR--EGGYTCECRPGFTGEHCEVSARAGRCVP-GVCKNGGTCVNLLNGGFCCHCPYGEFE 1311 (2531)
T ss_pred             CCCCCCCceEEe--cCceeEEecCCccccceeeecccCcccc-ceecCCCEEeecCCCceeccCCCcccC
Confidence            468888899643  3699999999999975320001112321 11112567766 468899999999433

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=90.04  E-value=0.19  Score=46.90  Aligned_cols=37  Identities=30%  Similarity=0.520  Sum_probs=29.5

Q ss_pred             CcccCccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          283 GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       283 gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      -|.++++|.. ....|...|.++.|+|.|.|+.||...
T Consensus       183 ~C~~~~~C~~-~~~~c~~~C~~~~g~~~c~c~~g~~~~  219 (224)
T cd01475         183 ICVVPDLCAT-LSHVCQQVCISTPGSYLCACTEGYALL  219 (224)
T ss_pred             cCcCchhhcC-CCCCccceEEcCCCCEEeECCCCccCC
Confidence            4667778864 345688899999999999999999653

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=89.94  E-value=0.76  Score=48.35  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=26.8

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEecccc
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEA  424 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~  424 (491)
                      +.|+.-+.|+|+++++++|+.||||.-++.
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~  196 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPG  196 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcC
Confidence            579999999999999999999999986654

>smart00181 EGF Epidermal growth factor-like domain

Probab=89.37  E-value=0.5  Score=29.45  Aligned_cols=25  Identities=32%  Similarity=1.011  Sum_probs=20.2

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      .|..+ .|.+.  .++|.|.|++||.|+
T Consensus         7 ~C~~~-~C~~~--~~~~~C~C~~g~~g~   31 (35)
T smart00181        7 PCSNG-TCINT--PGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCC-EEECC--CCCeEeECCCCCccC
Confidence            57666 89865  358999999999996

>PRK10593 hypothetical protein; Provisional

Probab=89.17  E-value=1.4  Score=43.16  Aligned_cols=79  Identities=10%  Similarity=0.086  Sum_probs=56.0

Q ss_pred             cccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC---CccccEEeEEEe---CCccEEEE
Q 011189          392 DKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH---KNVVKILGLCLQ---TKVPLLVY  465 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~---~~~~~lv~  465 (491)
                      ...+.||.|..+.||+-...+++ +.+|..+...   ....|.+|.+.++.+..   -.+.++++.+..   .+..+|||
T Consensus        17 ~~~~~i~~G~~~~vy~~~~~~~~-~~~k~~~~~~---~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVm   92 (297)
T PRK10593         17 SRVECISEQPYAALWALYDSQGN-PMPLMARSFS---TPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLL   92 (297)
T ss_pred             heeeecCCccceeEEEEEcCCCC-EEEEEecccc---cchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEE
Confidence            33467999999999998765554 5556643211   22568899999988853   356788887754   35689999


Q ss_pred             eccCCCChh
Q 011189          466 EFVSNGTLF  474 (491)
Q Consensus       466 Ey~~~GsL~  474 (491)
                      |+++++++.
T Consensus        93 E~i~G~~~~  101 (297)
T PRK10593         93 ERLRGVSVE  101 (297)
T ss_pred             eccCCEecC
Confidence            999987764

>PLN02876 acyl-CoA dehydrogenase

Probab=89.03  E-value=1.3  Score=50.01  Aligned_cols=80  Identities=13%  Similarity=0.335  Sum_probs=55.9

Q ss_pred             cceeccCCcceEEEEEEcCC---cEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCcc--ccEEeEEEeC---CccEEE
Q 011189          394 SNFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNV--VKILGLCLQT---KVPLLV  464 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~---~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~ni--v~l~g~~~~~---~~~~lv  464 (491)
                      .+.++.|....+|+-...++   ..+++|+............+.+|.++|+.+. |.++  .+.++.+...   +.+++|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            45688999999998876543   3566676543322123356889999999995 6665  6777777554   467899


Q ss_pred             EeccCCCCh
Q 011189          465 YEFVSNGTL  473 (491)
Q Consensus       465 ~Ey~~~GsL  473 (491)
                      |||+++..+
T Consensus       123 ME~v~G~~~  131 (822)
T PLN02876        123 MEYLEGRIF  131 (822)
T ss_pred             EEecCCccc
Confidence            999987543

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=88.95  E-value=1.3  Score=39.74  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=58.3

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEe-cccc------chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKK-PKEA------DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~-l~~~------~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ..+.+|+-+.++.+.+ -+..+.+|. +.+.      +..-..+.-.+|+.++.+++--.|--..=+..+.....|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            3578899999999977 344455554 2211      1101234567899999988765555545555667778899999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++-.|.++|...
T Consensus        81 I~G~~lkd~l~~~   93 (204)
T COG3642          81 IEGELLKDALEEA   93 (204)
T ss_pred             eCChhHHHHHHhc
Confidence            9988888888765

>KOG4260 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.89  E-value=0.25  Score=45.99  Aligned_cols=79  Identities=28%  Similarity=0.583  Sum_probs=51.6

Q ss_pred             EEEEEeccCCCCCCCCC--CCcCCCCCCeeecCCCCCCeeeeeCCCCccCCCCCccc-CccccccCCCCccCcCcCCCCC
Q 011189          232 KIEWVVKEGKCPDDQNS--NVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHD-IDECKEKERYHCEGTCKNTFGN  308 (491)
Q Consensus       232 ~l~W~i~~~~C~~~~~~--~~~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~-~~~C~~~~~~~c~~~C~n~~g~  308 (491)
                      ...|.+....|.+....  ....|.....|.|+.  ++|.|.+++||.+.+ .-|+. .+.|..+     .+.|.|+.+.
T Consensus       223 kkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNte--GSf~C~dk~Gy~~g~-d~C~~~~d~~~~k-----n~~c~ni~~~  294 (350)
T KOG4260|consen  223 KKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTE--GSFKCEDKEGYKKGV-DECQFCADVCASK-----NRPCMNIDGQ  294 (350)
T ss_pred             cccceecccccccHHHHhcCCCCCChhheeecCC--CceEecccccccCCh-HHhhhhhhhcccC-----CCCcccCCcc
Confidence            46888887777543221  223466777887654  589999999998842 12322 1122222     4678999999


Q ss_pred             ccccCCCCCC
Q 011189          309 YTCDCPIGMH  318 (491)
Q Consensus       309 ~~C~C~~g~~  318 (491)
                      |+|.|..+..
T Consensus       295 ~r~v~f~~~~  304 (350)
T KOG4260|consen  295 YRCVCFSGLI  304 (350)
T ss_pred             EEEEecccce
Confidence            9999988763

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=88.74  E-value=0.087  Score=33.55  Aligned_cols=24  Identities=54%  Similarity=1.049  Sum_probs=19.4

Q ss_pred             cCcCcCCCCCccccCCCCCCCCCc
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      ...|.++.++|.|.|++||.+|+.
T Consensus        11 nA~C~~~~~~~~C~C~~Gy~GdG~   34 (36)
T PF12947_consen   11 NATCTNTGGSYTCTCKPGYEGDGF   34 (36)
T ss_dssp             TCEEEE-TTSEEEEE-CEEECCST
T ss_pred             CcEeecCCCCEEeECCCCCccCCc
Confidence            467889999999999999999875

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=88.51  E-value=0.23  Score=23.87  Aligned_cols=11  Identities=45%  Similarity=1.334  Sum_probs=8.7

Q ss_pred             eeeeCCCCccC
Q 011189          269 RCLCKPGFQGN  279 (491)
Q Consensus       269 ~C~C~~G~~gn  279 (491)
                      .|.|++||.|.
T Consensus         1 ~C~C~~G~~G~   11 (13)
T PF12661_consen    1 TCQCPPGWTGP   11 (13)
T ss_dssp             EEEE-TTEETT
T ss_pred             CccCcCCCcCC
Confidence            59999999985

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=88.14  E-value=0.4  Score=30.20  Aligned_cols=32  Identities=53%  Similarity=1.165  Sum_probs=23.4

Q ss_pred             CccccccCCCCc--cCcCcCCCCCccccCCCCCCCC
Q 011189          287 IDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       287 ~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +++|...  ..|  .+.|.++.+.|.|.|+.+|.+.
T Consensus         2 ~~~C~~~--~~C~~~~~C~~~~~~~~C~C~~g~~g~   35 (38)
T cd00054           2 IDECASG--NPCQNGGTCVNTVGSYRCSCPPGYTGR   35 (38)
T ss_pred             cccCCCC--CCcCCCCEeECCCCCeEeECCCCCcCC
Confidence            3455431  345  5689999999999999998764

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=87.99  E-value=0.58  Score=29.80  Aligned_cols=26  Identities=35%  Similarity=0.977  Sum_probs=20.3

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCc-cC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQ-GN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~-gn  279 (491)
                      .|..++.|.+..  ++|.|.|++||. |.
T Consensus        10 ~C~~~~~C~~~~--g~~~C~C~~g~~~g~   36 (39)
T smart00179       10 PCQNGGTCVNTV--GSYRCECPPGYTDGR   36 (39)
T ss_pred             CcCCCCEeECCC--CCeEeECCCCCccCC
Confidence            577677898654  479999999998 53

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=87.90  E-value=1.4  Score=35.05  Aligned_cols=7  Identities=29%  Similarity=0.591  Sum_probs=3.4

Q ss_pred             CCCCCCC
Q 011189          313 CPIGMHG  319 (491)
Q Consensus       313 C~~g~~~  319 (491)
                      |..+|..
T Consensus        42 C~~GY~~   48 (96)
T PTZ00382         42 CNSGFSL   48 (96)
T ss_pred             CcCCccc
Confidence            4455544

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=87.60  E-value=0.19  Score=51.61  Aligned_cols=72  Identities=17%  Similarity=0.381  Sum_probs=59.4

Q ss_pred             hhccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      ..++|.....+|.|+||+|+.+.... +-..|||+|..........+.++|+..+.++.|++++++.-.+..+
T Consensus        47 ~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~~  119 (516)
T KOG1033|consen   47 EANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYER  119 (516)
T ss_pred             hhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceecC
Confidence            34567778889999999999988654 4489999998777656778899999999999999999988777654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=86.62  E-value=0.82  Score=48.55  Aligned_cols=66  Identities=20%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCChhhhhcc
Q 011189          411 SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       411 ~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .++..|.|...+.... ...+...+.+..|+.++||||++++......+..|||+|-+.  -|..+|++
T Consensus        35 ~~~~~vsVF~~~~~~~-~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~  100 (690)
T KOG1243|consen   35 ADGGPVSVFVYKRSNG-EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE  100 (690)
T ss_pred             ccCCceEEEEEeCCCc-hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH
Confidence            4677788887766544 344556778888999999999999999999999999999873  35555554

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=86.03  E-value=0.86  Score=28.56  Aligned_cols=26  Identities=35%  Similarity=0.986  Sum_probs=20.5

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      .|..++.|.+..  ++|.|.|++||.|.
T Consensus        10 ~C~~~~~C~~~~--~~~~C~C~~g~~g~   35 (38)
T cd00054          10 PCQNGGTCVNTV--GSYRCSCPPGYTGR   35 (38)
T ss_pred             CcCCCCEeECCC--CCeEeECCCCCcCC
Confidence            576677888655  47999999999884

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=85.64  E-value=0.15  Score=53.43  Aligned_cols=86  Identities=22%  Similarity=0.312  Sum_probs=64.8

Q ss_pred             eeccCCcceEEEEE----EcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEeccC
Q 011189          396 FLGEGGFGSVYRGV----LSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       396 ~lG~G~fG~V~~g~----~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      ++|+|.||.|+...    .+.+...|.|.++.... .........|..++..++ ||.+|++...+..+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            37899999988543    34567778877654321 112224556777888886 9999999999999999999999999


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                      +|+|...+....
T Consensus        81 gg~lft~l~~~~   92 (612)
T KOG0603|consen   81 GGDLFTRLSKEV   92 (612)
T ss_pred             cchhhhccccCC
Confidence            999998887653

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=84.87  E-value=3.6  Score=37.02  Aligned_cols=87  Identities=15%  Similarity=0.180  Sum_probs=58.4

Q ss_pred             ccceeccCCcceEEEEEEcCCcEEEEEecccc-------chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          393 KSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEA-------DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~-------~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ...++-+|+-+.|+++.+ .|+...||.-...       +..-...+-.+|++++.+++--.|.-..-++.+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            456789999999999998 5766667652211       11122456788999999886555543333444555567999


Q ss_pred             eccCC-CChhhhhccC
Q 011189          466 EFVSN-GTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~-GsL~~~L~~~  480 (491)
                      ||+++ -++.+++...
T Consensus        90 E~~~g~~~vk~~i~~~  105 (229)
T KOG3087|consen   90 EFIDGASTVKDFILST  105 (229)
T ss_pred             EeccchhHHHHHHHHH
Confidence            99975 3688888754

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=84.02  E-value=5.4  Score=40.66  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             ceeccCCcceEEEEEEcCC-cEEEEEeccccc----h--hhHHHHHHHHHHHHHcCC---CCccccEEeEEEeCCccEEE
Q 011189          395 NFLGEGGFGSVYRGVLSDD-TQVAVKKPKEAD----K--IRVSQEFQHEMGIVSQIN---HKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~-~~vavK~l~~~~----~--~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv  464 (491)
                      +.||.|.+..||+....++ +.+.||.-.+..    .  +...+.+..|.+.|..+.   ...+.+++.+  ..+..++|
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~lV  109 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVTV  109 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEEE
Confidence            5799999999999998776 489999854221    1  123456777888887762   2456666665  33557899


Q ss_pred             EeccCCCC-hhhhhc
Q 011189          465 YEFVSNGT-LFHHIH  478 (491)
Q Consensus       465 ~Ey~~~Gs-L~~~L~  478 (491)
                      |||+++.. |.+.|-
T Consensus       110 ME~L~~~~~lr~~Ll  124 (401)
T PRK09550        110 MEDLSDHKILRKGLI  124 (401)
T ss_pred             EecCCCccHHHHHHh
Confidence            99998654 444444

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=83.69  E-value=0.85  Score=28.08  Aligned_cols=21  Identities=62%  Similarity=1.252  Sum_probs=18.9

Q ss_pred             CcCcCCCCCccccCCCCCCCC
Q 011189          300 GTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       300 ~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +.|.++.++|.|.|+.||.++
T Consensus        12 ~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053          12 GTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CEEecCCCCeEeECCCCCccc
Confidence            788898899999999999876

>smart00181 EGF Epidermal growth factor-like domain

Probab=82.04  E-value=1  Score=27.98  Aligned_cols=24  Identities=58%  Similarity=1.236  Sum_probs=20.0

Q ss_pred             CccC-cCcCCCCCccccCCCCCCCC
Q 011189          297 HCEG-TCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       297 ~c~~-~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|.. .|.++.++|.|.|+.||.++
T Consensus         7 ~C~~~~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        7 PCSNGTCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCEEECCCCCeEeECCCCCccC
Confidence            4544 78889999999999999874

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=81.79  E-value=7.1  Score=35.83  Aligned_cols=77  Identities=19%  Similarity=0.304  Sum_probs=55.3

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCC--ccccEEeEEEeC---CccEEEEeccC
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK--NVVKILGLCLQT---KVPLLVYEFVS  469 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~~~~~---~~~~lv~Ey~~  469 (491)
                      +.++.|..+.||+....+ ..+++|.....   .....+.+|..++..+...  .+.+++......   ...+++||+++
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~---~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~   78 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPP---DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIP   78 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSH---HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEES
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCC---CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEec
Confidence            568999999999999866 68889987654   2345677888888877433  355677654333   34689999999


Q ss_pred             CCChhh
Q 011189          470 NGTLFH  475 (491)
Q Consensus       470 ~GsL~~  475 (491)
                      +..+..
T Consensus        79 g~~~~~   84 (239)
T PF01636_consen   79 GRPLDD   84 (239)
T ss_dssp             SEEHHH
T ss_pred             cccccc
Confidence            888777

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=80.76  E-value=5.6  Score=37.11  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             ceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCc--cccEEeEEEeCCccEEEEeccCCCC
Q 011189          395 NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN--VVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      ..||+|..+.||+.   .+..+++|.......   .....+|.+++..+..-.  +.+.++.....+...+|||+++|.+
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~~---~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGFD---KETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCCC---HHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            56899999999983   244566787665332   244578998888886433  3566777666667789999999864

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	491
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-14
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-14
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-09
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-09
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-09
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-09
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		6e-09
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		6e-09
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		3e-08
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		4e-08
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		5e-08
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		6e-08
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		6e-08
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		6e-08
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		6e-08
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		6e-08
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		6e-08
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		6e-08
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		6e-08
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		6e-08
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		6e-08
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		7e-08
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		9e-08
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		9e-08
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		2e-07
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		2e-07
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-07
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-07
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-07
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-07
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		5e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		6e-07
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		6e-07
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		6e-07
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		7e-07
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		7e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		8e-07
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-07
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		8e-07
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		8e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		8e-07
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		8e-07
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		9e-07
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		9e-07
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		9e-07
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		9e-07
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		9e-07
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		9e-07
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-06
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-06
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-06
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-06
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		1e-06
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		1e-06
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		1e-06
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-06
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		1e-06
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		2e-06
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-06
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-06
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		2e-06
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		2e-06
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		2e-06
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		2e-06
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-06
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		2e-06
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		2e-06
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		2e-06
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		2e-06
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		2e-06
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		2e-06
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		2e-06
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		2e-06
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		2e-06
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		2e-06
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		2e-06
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		2e-06
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		2e-06
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		3e-06
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		3e-06
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		3e-06
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		3e-06
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-06
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		3e-06
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		3e-06
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		3e-06
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		3e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		3e-06
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		3e-06
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-06
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		4e-06
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		8e-06
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		9e-06
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		9e-06
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		9e-06
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		9e-06
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		1e-05
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		1e-05
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-05
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		1e-05
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		1e-05
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		1e-05
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		1e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		2e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		2e-05
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		4e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		4e-05
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		6e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		6e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		7e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		7e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		7e-05
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		8e-05
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		8e-05
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		8e-05
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		8e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		8e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-04
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		1e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-04
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		1e-04
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		1e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		1e-04
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-04
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		1e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-04
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-04
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		2e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-04
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		2e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-04
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-04
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		2e-04
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		2e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		2e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-04
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		2e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		2e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		2e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		2e-04
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-04
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		2e-04
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-04
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-04
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		2e-04
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-04
2w2n_E	107	Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr		2e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-04
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-04
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		2e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-04
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		2e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		2e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		2e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		3e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		3e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		3e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		3e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		3e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		4e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		4e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-04
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		4e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		5e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		5e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		5e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-04
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		5e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		5e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		6e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		6e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		6e-04
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		6e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		7e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		7e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2w2m_E	107	Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length =		7e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		7e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		8e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		8e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		8e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		8e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		8e-04
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		8e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		9e-04
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 62/99 (62%)
Query: 375 RVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQ 434
           +++ FS  EL  A+ N+   N LG GGFG VY+G L+D T VAVK+ KE        +FQ
Sbjct: 24  QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQ 83
Query: 435 HEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            E+ ++S   H+N++++ G C+     LLVY +++NG++
Sbjct: 84  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 122

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 375 RVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQ 434
           +++ FS  EL  A+ N+   N LG GGFG VY+G L+D   VAVK+ KE        +FQ
Sbjct: 16  QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQ 75
Query: 435 HEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            E+ ++S   H+N++++ G C+     LLVY +++NG++
Sbjct: 76  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 114

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 391 YDKSNFLGEGGFGSVYRG-VLSDDTQVAVKK------PKEADKIRVSQEFQHEMGIVSQI 443
           Y+K   +G+GGFG V++G ++ D + VA+K         E + I   QEFQ E+ I+S +
Sbjct: 23  YEKQ--IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL 80
Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           NH N+VK+ GL      P +V EFV  G L+H +  K+  +   W +
Sbjct: 81  NHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPI--KWSV 123

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 391 YDKSNFLGEGGFGSVYRG-VLSDDTQVAVKK------PKEADKIRVSQEFQHEMGIVSQI 443
           Y+K   +G+GGFG V++G ++ D + VA+K         E + I   QEFQ E+ I+S +
Sbjct: 23  YEKQ--IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL 80
Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           NH N+VK+ GL      P +V EFV  G L+H +  K+  +   W +
Sbjct: 81  NHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPI--KWSV 123

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 391 YDKSNFLGEGGFGSVYRG-VLSDDTQVAVKK------PKEADKIRVSQEFQHEMGIVSQI 443
           Y+K   +G+GGFG V++G ++ D + VA+K         E + I   QEFQ E+ I+S +
Sbjct: 23  YEKQ--IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL 80
Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           NH N+VK+ GL      P +V EFV  G L+H +  K+  +   W +
Sbjct: 81  NHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPI--KWSV 123

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 375 RVRIFSEAELIKATKNYDKS------NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI- 427
           R   FS  EL   T N+D+       N +GEGGFG VY+G + ++T VAVKK      I 
Sbjct: 5   RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT 63
Query: 428 --RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
              + Q+F  E+ ++++  H+N+V++LG         LVY ++ NG+L   +
Sbjct: 64  TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 115

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 375 RVRIFSEAELIKATKNYDKS------NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI- 427
           R   FS  EL   T N+D+       N +GEGGFG VY+G + ++T VAVKK      I 
Sbjct: 11  RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT 69
Query: 428 --RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
              + Q+F  E+ ++++  H+N+V++LG         LVY ++ NG+L   +
Sbjct: 70  TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 375 RVRIFSEAELIKATKNYDKS------NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI- 427
           R   FS  EL   T N+D+       N +GEGGFG VY+G + ++T VAVKK      I 
Sbjct: 11  RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT 69
Query: 428 --RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
              + Q+F  E+ ++++  H+N+V++LG         LVY ++ NG+L   +
Sbjct: 70  TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 375 RVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRV 429
           ++RI  E EL        +   LG G FG+VY+G+   + +     VA+K   E    + 
Sbjct: 8   QLRILKETEL-------KRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKA 60
Query: 430 SQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVL 485
           + EF  E  I++ ++H ++V++LG+CL   +  LV + + +G L  ++H       SQ+L
Sbjct: 61  NVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDNIGSQLL 119
Query: 486 KTW 488
             W
Sbjct: 120 LNW 122

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 375 RVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRV 429
           ++RI  E EL        +   LG G FG+VY+G+   + +     VA+K   E    + 
Sbjct: 31  QLRILKETEL-------KRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKA 83
Query: 430 SQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVL 485
           + EF  E  I++ ++H ++V++LG+CL   +  LV + + +G L  ++H       SQ+L
Sbjct: 84  NVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDNIGSQLL 142
Query: 486 KTW 488
             W
Sbjct: 143 LNW 145

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 378 IFSEAELIKATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQ 431
           +F   E   A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   
Sbjct: 5   VFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 64
Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           EF +E  ++ + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 65  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 112

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 375 RVRIFSEAELIKATKNYDKS------NFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI- 427
           R   FS  EL   T N+D+       N  GEGGFG VY+G + ++T VAVKK      I 
Sbjct: 2   RFHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT 60
Query: 428 --RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
              + Q+F  E+ + ++  H+N+V++LG         LVY +  NG+L   +
Sbjct: 61  TEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRL 112

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 17  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 76
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 77  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 115

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 8   AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 67
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 68  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 106

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 13  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 72
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 73  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 111

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 16  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 75
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 76  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 114

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 17  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 76
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 77  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 115

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 16  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 75
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 76  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 114

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 23  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 82
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 83  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 121

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 23  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 82
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 83  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 121

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 397 LGEGGFGSVYR----GVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           +GEG FG V++    G+L  +  T VAVK  KE     +  +FQ E  ++++ ++ N+VK
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           +LG+C   K   L++E+++ G L   + S S   +
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTV 149

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 10  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 69
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 70  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 108

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 10  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 69
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 70  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 108

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 387 ATKNYDKSNFLGEGGFGSVY----RGVLSDD--TQVAVKKPKEADKIRVSQEFQHEMGIV 440
           A +    S  LG+G FG VY    +GV+ D+  T+VA+K   EA  +R   EF +E  ++
Sbjct: 45  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 104
Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
            + N  +VV++LG+  Q +  L++ E ++ G L  ++ S
Sbjct: 105 KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRS 143

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVS 441
            +L +AT N+D    +G G FG VY+GVL D  +VA+K+ +  +  +  +EF+ E+  +S
Sbjct: 32  VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTPESSQGIEEFETEIETLS 90
Query: 442 QINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
              H ++V ++G C +    +L+Y+++ NG L  H++
Sbjct: 91  FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVS 441
            +L +AT N+D    +G G FG VY+GVL D  +VA+K+ +  +  +  +EF+ E+  +S
Sbjct: 32  VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTPESSQGIEEFETEIETLS 90
Query: 442 QINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
              H ++V ++G C +    +L+Y+++ NG L  H++
Sbjct: 91  FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG V+ G L +D+T VAVK  +E     +  +F  E  I+ Q +H N+V+++G+C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
            Q +   +V E V  G     + ++ +++
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGARL 210

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG V+ G L +D+T VAVK  +E     +  +F  E  I+ Q +H N+V+++G+C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
            Q +   +V E V  G     + ++ +++
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGARL 210

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 397 LGEGGFGSVYRG----VL--SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+      +L   D   VAVK  KEA +    Q+FQ E  +++ + H+++V+
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTMLQHQHIVR 84
Query: 451 ILGLCLQTKVPLLVYEFVSNGTL--FHHIHSKSSQVL 485
             G+C + +  L+V+E++ +G L  F   H   +++L
Sbjct: 85  FFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLL 121

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 397 LGEGGFGSVYRG----VL--SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+      +L   D   VAVK  KEA +    Q+FQ E  +++ + H+++V+
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTMLQHQHIVR 78
Query: 451 ILGLCLQTKVPLLVYEFVSNGTL--FHHIHSKSSQVL 485
             G+C + +  L+V+E++ +G L  F   H   +++L
Sbjct: 79  FFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLL 115

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 397 LGEGGFGSVYRG------VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  KEA +    Q+FQ E  +++ + H+++V+
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTMLQHQHIVR 107
Query: 451 ILGLCLQTKVPLLVYEFVSNGTL--FHHIHSKSSQVL 485
             G+C + +  L+V+E++ +G L  F   H   +++L
Sbjct: 108 FFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLL 144

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 397 LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG G FG VY GV       VAVK  KE D + V +EF  E  ++ +I H N+V++LG+C
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKEAAVMKEIKHPNLVQLLGVC 76
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            +     ++ EF++ G L  ++ 
Sbjct: 77  TREPPFYIITEFMTYGNLLDYLR 99

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
           ++ NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 6   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 63
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 64  EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLR 106

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
           ++ NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 6   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 63
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 64  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
           ++ NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 6   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 63
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 64  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
           ++ NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 6   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 63
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 64  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 385 IKATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEF 433
            + + NYDK             LG G +G VY GV       VAVK  KE D + V +EF
Sbjct: 12  FQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEF 69
Query: 434 QHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
             E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++  
Sbjct: 70  LKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 115

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
           ++ NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 6   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 63
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 64  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 2   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 59
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLR 101

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 3   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 60
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 61  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLR 102

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 3   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 60
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 61  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 102

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 6   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 63
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 105

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 2   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 59
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLR 101

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
            + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 1   VSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 58
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++
Sbjct: 59  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 100

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 2   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 59
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 101

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 2   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 59
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 101

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 387 ATKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQH 435
            + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  
Sbjct: 1   VSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLK 58
Query: 436 EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           E  ++ +I H N+V++LG+C +     ++ EF++ G L  ++  
Sbjct: 59  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 102

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 4   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 61
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++ 
Sbjct: 62  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 103

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 390 NYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMG 438
           NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E  
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKEAA 63
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           ++ +I H N+V++LG+C +     ++ EF++ G L  ++  
Sbjct: 64  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 104

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 209 SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 266
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++
Sbjct: 267 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 307

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 10  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 62
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 63  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGXLLDYVREHKDNIGSQYLL 121
Query: 487 TW 488
            W
Sbjct: 122 NW 123

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 397 LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG G +G VY GV       VAVK  KE D + V +EF  E  ++ +I H N+V++LG+C
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKEAAVMKEIKHPNLVQLLGVC 76
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            +     ++ EF++ G L  ++ 
Sbjct: 77  TREPPFYIIIEFMTYGNLLDYLR 99

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 4   SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 61
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++
Sbjct: 62  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 102

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 397 LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG G +G VY GV       VAVK  KE D + V +EF  E  ++ +I H N+V++LG+C
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKEAAVMKEIKHPNLVQLLGVC 76
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            +     ++ EF++ G L  ++ 
Sbjct: 77  TREPPFYIITEFMTYGNLLDYLR 99

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 9   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 61
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 62  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGXLLDYVREHKDNIGSQYLL 120
Query: 487 TW 488
            W
Sbjct: 121 NW 122

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 388 TKNYDKSNF----------LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHE 436
           + NYDK             LG G +G VY GV       VAVK  KE D + V +EF  E
Sbjct: 248 SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEV-EEFLKE 305
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
             ++ +I H N+V++LG+C +     ++ EF++ G L  ++
Sbjct: 306 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 346

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 11  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 63
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 64  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 122
Query: 487 TW 488
            W
Sbjct: 123 NW 124

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 12  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 64
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 65  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 123
Query: 487 TW 488
            W
Sbjct: 124 NW 125

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 11  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 63
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 64  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 122
Query: 487 TW 488
            W
Sbjct: 123 NW 124

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 10  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 62
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 63  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 121
Query: 487 TW 488
            W
Sbjct: 122 NW 123

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 11  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 63
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 64  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 122
Query: 487 TW 488
            W
Sbjct: 123 NW 124

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 13  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 65
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 66  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 124
Query: 487 TW 488
            W
Sbjct: 125 NW 126

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 13  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 65
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 66  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 124
Query: 487 TW 488
            W
Sbjct: 125 NW 126

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 9   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 61
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 62  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 120
Query: 487 TW 488
            W
Sbjct: 121 NW 122

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 45  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 104
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 105 LNHQNIVRCIGVSLQSLPRFILLELMAGGDL 135

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 31  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 90
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 91  LNHQNIVRCIGVSLQSLPRFILLELMAGGDL 121

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 34  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 86
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 87  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 145
Query: 487 TW 488
            W
Sbjct: 146 NW 147

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 45  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISK 104
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 105 FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 135

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 9   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 61
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 62  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 120
Query: 487 TW 488
            W
Sbjct: 121 NW 122

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 11  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 63
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 64  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 122
Query: 487 TW 488
            W
Sbjct: 123 NW 124

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 9   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 61
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 62  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 120
Query: 487 TW 488
            W
Sbjct: 121 NW 122

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 12  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 64
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 65  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 123
Query: 487 TW 488
            W
Sbjct: 124 NW 125

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 16  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 68
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 69  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 127
Query: 487 TW 488
            W
Sbjct: 128 NW 129

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 12  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 64
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 65  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 123
Query: 487 TW 488
            W
Sbjct: 124 NW 125

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 11  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 63
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 64  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 122
Query: 487 TW 488
            W
Sbjct: 123 NW 124

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 6   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 58
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 59  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 117
Query: 487 TW 488
            W
Sbjct: 118 NW 119

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 16  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 68
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 69  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 127
Query: 487 TW 488
            W
Sbjct: 128 NW 129

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 12  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 64
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 65  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 123
Query: 487 TW 488
            W
Sbjct: 124 NW 125

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 3   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 55
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 56  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 114
Query: 487 TW 488
            W
Sbjct: 115 NW 116

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 19  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 71
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 72  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 130
Query: 487 TW 488
            W
Sbjct: 131 NW 132

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 15  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 67
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 68  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 126
Query: 487 TW 488
            W
Sbjct: 127 NW 128

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 9   LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 61
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 62  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 120
Query: 487 TW 488
            W
Sbjct: 121 NW 122

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 22  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 81
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 82  FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 112

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 30  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 89
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 90  FNHQNIVRCIGVSLQSLPRFILMELMAGGDL 120

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 45  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 104
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 105 FNHQNIVRCIGVSLQSLPRFILMELMAGGDL 135

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E EL        K   LG G FG+VY+G+   D +     VA+K  +E    + +
Sbjct: 11  LRILKETEL-------RKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKAN 63
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +    V ++LG+CL + V  LV + +  G L  H+        SQ L 
Sbjct: 64  KEILDEAYVMAGVGSPYVSRLLGICLTSTVQ-LVTQLMPYGCLLDHVRENRGRLGSQDLL 122
Query: 487 TW 488
            W
Sbjct: 123 NW 124

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 31  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 90
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 91  FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 121

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 30  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 89
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 90  FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 120

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 71  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 130
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 131 FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 161

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 47  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 106
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 107 FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 137

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 31  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 90
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 91  FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 121

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 393 KSNFLGEGGFGSVYRGVLS-----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
           +   +G G FG VY+G+L       +  VA+K  K     +   +F  E GI+ Q +H N
Sbjct: 48  RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN 107
Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           ++++ G+  + K  +++ E++ NG L   +  K  +
Sbjct: 108 IIRLEGVISKYKPMMIITEYMENGALDKFLREKDGE 143

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 48  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 107
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 108 FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 138

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 37  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 96
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 97  FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 127

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+
Sbjct: 57  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 116
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
            NH+N+V+ +G+ LQ+    ++ E ++ G L
Sbjct: 117 FNHQNIVRCIGVSLQSLPRFILLELMAGGDL 147

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   L  G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 16  LRILKETE-------FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 68
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L++ + +  G L  ++        SQ L 
Sbjct: 69  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLL 127
Query: 487 TW 488
            W
Sbjct: 128 NW 129

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 26  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 85
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 86  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 114

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 85  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 113

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 24  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 83
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 84  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 112

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 22  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 81
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 82  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 110

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 85  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 113

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 85  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 113

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 85  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 113

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY G   D      +T+VAVK   E+  +R   EF +E  ++      +VV+
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +LG+  + +  L+V E +++G L  ++ S
Sbjct: 85  LLGVVSKGQPTLVVMELMAHGDLKSYLRS 113

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   L  G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 9   LRILKETE-------FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 61
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 62  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 120
Query: 487 TW 488
            W
Sbjct: 121 NW 122

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   L  G FG+VY+G+   + +     VA+K+ +EA   + +
Sbjct: 16  LRILKETE-------FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN 68
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 69  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 127
Query: 487 TW 488
            W
Sbjct: 128 NW 129

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 381 EAELIKATKNYDKSN---FLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHE 436
           E++L++    YD++     LG+G +G VY G  LS+  ++A+K+  E D  R SQ    E
Sbjct: 11  ESDLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-RYSQPLHEE 69
Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           + +   + HKN+V+ LG   +     +  E V  G+L   + SK
Sbjct: 70  IALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSK 113

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVS 430
           +RI  E E       + K   LG G FG+VY+G+   + +     VA+ + +EA   + +
Sbjct: 43  LRILKETE-------FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKAN 95
Query: 431 QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS----SQVLK 486
           +E   E  +++ +++ +V ++LG+CL + V L+  + +  G L  ++        SQ L 
Sbjct: 96  KEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLL 154
Query: 487 TW 488
            W
Sbjct: 155 NW 156

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 397 LGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG G +G VY GV       VAVK  KE D + V +EF  E  ++ +I H N+V++LG+C
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKE-DTMEV-EEFLKEAAVMKEIKHPNLVQLLGVC 97
Query: 456 LQTKVPLLVYEFVSNGTLFHHI 477
                  +V E++  G L  ++
Sbjct: 98  TLEPPFYIVTEYMPYGNLLDYL 119

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 397 LGEGGFGSVYRGVL-----SDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGE  FG VY+G L      + TQ VA+K  K+  +  + +EF+HE  + +++ H NVV 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           +LG+  + +   +++ + S+G L   +  +S  
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPH 109

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 397 LGEGGFGSVYRGVL-----SDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGE  FG VY+G L      + TQ VA+K  K+  +  + +EF+HE  + +++ H NVV 
Sbjct: 34  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           +LG+  + +   +++ + S+G L   +  +S  
Sbjct: 94  LLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPH 126

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGL 454
           +G G FG+V+R      + VAVK   E D    RV+ EF  E+ I+ ++ H N+V  +G 
Sbjct: 45  IGAGSFGTVHRAEWHG-SDVAVKILMEQDFHAERVN-EFLREVAIMKRLRHPNIVLFMGA 102
Query: 455 CLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
             Q     +V E++S G+L+  +H   ++
Sbjct: 103 VTQPPNLSIVTEYLSRGSLYRLLHKSGAR 131

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGL 454
           +G G FG+V+R      + VAVK   E D    RV+ EF  E+ I+ ++ H N+V  +G 
Sbjct: 45  IGAGSFGTVHRAEWHG-SDVAVKILMEQDFHAERVN-EFLREVAIMKRLRHPNIVLFMGA 102
Query: 455 CLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
             Q     +V E++S G+L+  +H   ++
Sbjct: 103 VTQPPNLSIVTEYLSRGSLYRLLHKSGAR 131

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 396 FLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQ---HEMGIVSQINHKNVVKIL 452
            +G GGFG VYR     D +VAVK  +      +SQ  +    E  + + + H N++ + 
Sbjct: 14  IIGIGGFGKVYRAFWIGD-EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR 72
Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSK--SSQVLKTWKI 490
           G+CL+     LV EF   G L   +  K     +L  W +
Sbjct: 73  GVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAV 112

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 376 VRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEF- 433
           V + +E    ++ + Y+    +GEG +G V +    D  + VA+KK  E+D  ++ ++  
Sbjct: 12  VDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIA 71
Query: 434 QHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
             E+ ++ Q+ H+N+V +L +C + K   LV+EFV +  L
Sbjct: 72  MREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTIL 111

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+CL
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 75
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV+EF+ +G L  ++ ++
Sbjct: 76  EQAPICLVFEFMEHGCLSDYLRTQ 99

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  KE        +F  E  ++ +++H  +V++ G+CL
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIKEGSM--SEDDFIEEAEVMMKLSHPKLVQLYGVCL 92
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV+EF+ +G L  ++ ++
Sbjct: 93  EQAPICLVFEFMEHGCLSDYLRTQ 116

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+CL
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 72
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV+EF+ +G L  ++ ++
Sbjct: 73  EQAPICLVFEFMEHGCLSDYLRTQ 96

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+CL
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 70
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV+EF+ +G L  ++ ++
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLRTQ 94

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LGEG FG V +         +  T VAVK  KE       ++   E  ++ Q
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +NH +V+K+ G C Q    LL+ E+   G+L
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG+G +G VY G  LS+  ++A+K+  E D  R SQ    E+ +   + HKN+V+ LG  
Sbjct: 16  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-RYSQPLHEEIALHKHLKHKNIVQYLGSF 74
Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSK 480
            +     +  E V  G+L   + SK
Sbjct: 75  SENGFIKIFMEQVPGGSLSALLRSK 99

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LGEG FG V +         +  T VAVK  KE       ++   E  ++ Q
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +NH +V+K+ G C Q    LL+ E+   G+L
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           KN      LGEG FG V +         +  T VAVK  KE       ++   E  ++ Q
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82
Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +NH +V+K+ G C Q    LL+ E+   G+L
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+CL
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 72
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV+EF+ +G L  ++ ++
Sbjct: 73  EQAPICLVFEFMEHGCLSDYLRTQ 96

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            + ++  +V ++    +L+HH+H+  ++
Sbjct: 90  TKPQLA-IVTQWCEGSSLYHHLHASETK 116

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 397 LGEGGFGSV----YRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G+G FG V    YRG      +VAVK  K       +Q F  E  +++Q+ H N+V++L
Sbjct: 29  IGKGEFGDVMLGDYRG-----NKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLL 80
Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           G+ ++ K  L +V E+++ G+L  ++ S+   VL
Sbjct: 81  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 114

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 397 LGEGGFGSVYRG------VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  K+A      ++F  E  +++ + H+++VK
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD-NARKDFHREAELLTNLQHEHIVK 79
Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
             G+C++    ++V+E++ +G L
Sbjct: 80  FYGVCVEGDPLIMVFEYMKHGDL 102

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 20  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 77
Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            + ++  +V ++    +L+HH+H+  ++
Sbjct: 78  TKPQLA-IVTQWCEGSSLYHHLHASETK 104

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 397 LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG V RG L      ++ VA+K  K     R  +EF  E  I+ Q  H N++++ 
Sbjct: 24  IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 83
Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+   +   +++ EF+ NG L
Sbjct: 84  GVVTNSMPVMILTEFMENGAL 104

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 397 LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG V RG L      ++ VA+K  K     R  +EF  E  I+ Q  H N++++ 
Sbjct: 22  IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 81
Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+   +   +++ EF+ NG L
Sbjct: 82  GVVTNSMPVMILTEFMENGAL 102

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 397 LGEGGFGSV----YRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G+G FG V    YRG      +VAVK  K       +Q F  E  +++Q+ H N+V++L
Sbjct: 20  IGKGEFGDVMLGDYRG-----NKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLL 71
Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           G+ ++ K  L +V E+++ G+L  ++ S+   VL
Sbjct: 72  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 105

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 397 LGEGGFGSV----YRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G+G FG V    YRG      +VAVK  K       +Q F  E  +++Q+ H N+V++L
Sbjct: 201 IGKGEFGDVMLGDYRG-----NKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLL 252
Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           G+ ++ K  L +V E+++ G+L  ++ S+   VL
Sbjct: 253 GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 286

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 379 FSEAELIKATKNYDKSN-------FLGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIR 428
           FS+ E +K  K + K +        LG G FGSV +GV         VA+K  K+  +  
Sbjct: 319 FSDPEELKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA 378
Query: 429 VSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
            ++E   E  I+ Q+++  +V+++G+C Q +  +LV E    G L   +  K  ++
Sbjct: 379 DTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEI 433

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 397 LGEGGFGSV----YRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G+G FG V    YRG      +VAVK  K       +Q F  E  +++Q+ H N+V++L
Sbjct: 14  IGKGEFGDVMLGDYRG-----NKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLL 65
Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           G+ ++ K  L +V E+++ G+L  ++ S+   VL
Sbjct: 66  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 99

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKP---KEADKIRVSQEF 433
           RIF E EL        K   LG G FG+V++GV   + + ++K P   K  +     Q F
Sbjct: 8   RIFKETEL-------RKLKVLGSGVFGTVHKGVWIPEGE-SIKIPVCIKVIEDKSGRQSF 59
Query: 434 QH---EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH----SKSSQVLK 486
           Q     M  +  ++H ++V++LGLC  + +  LV +++  G+L  H+     +   Q+L 
Sbjct: 60  QAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGPQLLL 118
Query: 487 TWKI 490
            W +
Sbjct: 119 NWGV 122

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKP---KEADKIRVSQEF 433
           RIF E EL        K   LG G FG+V++GV   + + ++K P   K  +     Q F
Sbjct: 26  RIFKETEL-------RKLKVLGSGVFGTVHKGVWIPEGE-SIKIPVCIKVIEDKSGRQSF 77
Query: 434 QH---EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH----SKSSQVLK 486
           Q     M  +  ++H ++V++LGLC  + +  LV +++  G+L  H+     +   Q+L 
Sbjct: 78  QAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGPQLLL 136
Query: 487 TWKI 490
            W +
Sbjct: 137 NWGV 140

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 397 LGEGGFGSVYRG------VLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  K+   +   ++FQ E  +++ + H+++VK
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-LAARKDFQREAELLTNLQHEHIVK 81
Query: 451 ILGLCLQTKVPLLVYEFVSNGTL--FHHIHSKSSQVL 485
             G+C      ++V+E++ +G L  F   H   + +L
Sbjct: 82  FYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMIL 118

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           GY CLC  GFQ      C DIDEC++ +   C   C N  G Y C C  G   D
Sbjct: 20  GYECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLD 71

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 395 NFLGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
             +G G  G V  G L      D  VA+K  K     R  ++F  E  I+ Q +H N+++
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           + G+  + ++ ++V E++ NG+L   + +   Q
Sbjct: 115 LEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ 147

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 395 NFLGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
             +G G  G V  G L      D  VA+K  K     R  ++F  E  I+ Q +H N+++
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114
Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           + G+  + ++ ++V E++ NG+L   + +   Q
Sbjct: 115 LEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ 147

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 27  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 86
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 87  IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 131

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 10  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 69
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 70  IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 114

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 156
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 157 GICLRSEGSPLVVLPYMKHGDLRNFIRNET 186

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 56  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 115
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 116 GICLRSEGSPLVVLPYMKHGDLRNFIRNET 145

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIITLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 26  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 83
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 84  QEPI-YIITEYMENGSLVDFLKTPS 107

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 30  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 89
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 90  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 119

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 78
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 79  QEPI-YIITEYMENGSLVDFLKTPS 102

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 78
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 79  QEPI-YIITEYMENGSLVDFLKTPS 102

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 87
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 88  QEPI-YIITEYMENGSLVDFLKTPS 111

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 23  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 80
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 81  QEPI-YIITEYMENGSLVDFLKTPS 104

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEM 437
           A+ + AT N      +G G FG V  G L      +  VA+K  K     +  ++F  E 
Sbjct: 39  AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97
Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 78
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 79  QEPI-YIITEYMENGSLVDFLKTPS 102

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 84
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 85  QEPI-YIITEYMENGSLVDFLKTPS 108

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 35  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 94
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 95  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 124

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 84
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 85  QEPI-YIITEYMENGSLVDFLKTPS 108

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 39  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 98
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 99  IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEM 437
           A+ + AT N      +G G FG V  G L      +  VA+K  K     +  ++F  E 
Sbjct: 39  AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97
Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
              ++  +V ++    +L+HH+H+  ++
Sbjct: 90  TAPQLA-IVTQWCEGSSLYHHLHASETK 116

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 29  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 86
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 87  QEPI-YIITEYMENGSLVDFLKTPS 110

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 98  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 127

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEM 437
           A+ + AT N      +G G FG V  G L      +  VA+K  K     +  ++F  E 
Sbjct: 39  AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97
Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEM 437
           A+ + AT N      +G G FG V  G L      +  VA+K  K     +  ++F  E 
Sbjct: 39  AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97
Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 22  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 79
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 80  QEPI-YIITEYMENGSLVDFLKTPS 103

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 37  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 96
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 97  IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 141

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 39  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 98
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 99  IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 57  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 116
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 117 GICLRSEGSPLVVLPYMKHGDLRNFIRNET 146

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 37  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 97  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 126

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 92
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 93  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 122

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEM 437
           A+ + AT N      +G G FG V  G L      +  VA+K  K     +  ++F  E 
Sbjct: 39  AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97
Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            I+ Q +H N++++ G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 36  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 96  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 125

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 100 HKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRAR 135

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 36  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 96  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 125

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 98  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 127

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 37  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 97  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 126

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 39  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 99  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 128

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 31  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 88
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 89  QEPI-YIITEYMENGSLVDFLKTPS 112

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 74
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 75  QEPI-YIITEYMENGSLVDFLKTPS 98

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 98  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 127

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           GY CLC  GFQ      C DIDEC++ +   C   C N  G Y C C  G   D
Sbjct: 60  GYECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLD 111

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 98  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 127

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT 73
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q  +  ++ E++ NG+L   + + S
Sbjct: 74  QEPI-YIITEYMENGSLVDFLKTPS 97

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 39  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 99  GICLRSEGSPLVVLPYMKHGDLRNFIRNET 128

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 394 SNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           +  LGEG FG VY GV +    +   VAVK  K+   +   ++F  E  I+  ++H ++V
Sbjct: 17  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 76
Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           K++G+ ++ +   ++ E    G L H++  ++   LK   +V
Sbjct: 77  KLIGI-IEEEPTWIIMELYPYGELGHYLE-RNKNSLKVLTLV 116

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 43  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 102
Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKS 481
           G+CL+++  PL+V  ++ +G L + I +++
Sbjct: 103 GICLRSEGSPLVVLPYMKHGDLRNFIRNET 132

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCT 89
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 90  KQRPIFIITEYMANGCLLNYLR 111

>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr Length = 107

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 221 LSDYD-KSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGN 279
           +SDYD  ++ N   +  +   +C D+     Y C D           GY CLC  GFQ  
Sbjct: 10  MSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKI--------GYECLCPDGFQLV 61
Query: 280 PYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
               C DIDEC++ +   C   C N  G Y C C  G   D
Sbjct: 62  AQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLD 100

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  ++ T+VAVK  K        Q F  E  ++  + H  +V++  +  
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLKPG--TMSVQAFLEEANLMKTLQHDKLVRLYAVVT 77
Query: 457 QTKVPLLVYEFVSNGTLFHHIHS 479
           + +   ++ EF++ G+L   + S
Sbjct: 78  KEEPIYIITEFMAKGSLLDFLKS 100

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 395 NFLGEGGFGSVYRGVLSDD----TQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVV 449
             LGEG FGSV  G L  +     +VAVK  K +    R  +EF  E   +   +H NV+
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 450 KILGLCLQTKV-----PLLVYEFVSNGTLFHHI 477
           ++LG+C++        P+++  F+  G L  ++
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL 132

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMNLSHEKLVQLYGVCT 74
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 75  KQRPIFIITEYMANGCLLNYLR 96

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCT 89
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 90  KQRPIFIITEYMANGCLLNYLR 111

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCT 80
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 81  KQRPIFIITEYMANGCLLNYLR 102

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 394 SNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           +  LGEG FG VY GV +    +   VAVK  K+   +   ++F  E  I+  ++H ++V
Sbjct: 13  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 72
Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           K++G+ ++ +   ++ E    G L H++ 
Sbjct: 73  KLIGI-IEEEPTWIIMELYPYGELGHYLE 100

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCT 74
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 75  KQRPIFIITEYMANGCLLNYLR 96

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCT 73
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 74  KQRPIFIITEYMANGCLLNYLR 95

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 394 SNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           +  LGEG FG VY GV +    +   VAVK  K+   +   ++F  E  I+  ++H ++V
Sbjct: 29  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 88
Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           K++G+ ++ +   ++ E    G L H++ 
Sbjct: 89  KLIGI-IEEEPTWIIMELYPYGELGHYLE 116

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 36  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 93
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 94  TKPQLA-IVTQWCEGSSLYHHLH 115

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 102 TKPQLA-IVTQWCEGSSLYHHLH 123

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+CL
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 73
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSK 480
           +     LV EF+ +G L  ++ ++
Sbjct: 74  EQAPICLVTEFMEHGCLSDYLRTQ 97

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 21  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 79  TKPQLA-IVTQWCEGSSLYHHLH 100

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 74  TKPQLA-IVTQWCEGSSLYHHLH 95

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 102 TKPQLA-IVTQWCEGSSLYHHLH 123

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 43  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 100
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 101 TKPQLA-IVTQWCEGSSLYHHLH 122

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCT 69
Query: 457 QTKVPLLVYEFVSNGTLFHHIH 478
           + +   ++ E+++NG L +++ 
Sbjct: 70  KQRPIFIITEYMANGCLLNYLR 91

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 397 LGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LG G FGSV +GV         VA+K  K+  +   ++E   E  I+ Q+++  +V+++G
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77
Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +C Q +  +LV E    G L   +  K  ++
Sbjct: 78  VC-QAEALMLVMEMAGGGPLHKFLVGKREEI 107

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VAVK  KE        EF  E   + +++H  +VK  G+C 
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIKEGS--MSEDEFFQEAQTMMKLSHPKLVKFYGVCS 73
Query: 457 QTKVPLLVYEFVSNGTLFHHIHS 479
           +     +V E++SNG L +++ S
Sbjct: 74  KEYPIYIVTEYISNGCLLNYLRS 96

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 74  TKPQLA-IVTQWCEGSSLYHHLH 95

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 21  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 79  TKPQLA-IVTQWCEGSSLYHHLH 100

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 18  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 75
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
            + ++  +V ++    +L+HH+H
Sbjct: 76  TKPQLA-IVTQWCEGSSLYHHLH 97

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 397 LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG V  G L      D  VA+K  K     +  ++F  E  I+ Q +H NVV + 
Sbjct: 51  IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLE 110
Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+  + K  ++V EF+ NG L
Sbjct: 111 GVVTRGKPVMIVIEFMENGAL 131

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 332
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  ++ + L+  ++V
Sbjct: 333 EEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLV 366

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPK-EADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N++  +G  
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 456 LQTKVPLLVYEFVSNGTLFHHIH 478
              ++  +V ++    +L+HH+H
Sbjct: 74  TAPQLA-IVTQWCEGSSLYHHLH 95

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 76
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  ++ + L+  ++V
Sbjct: 77  EEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLV 110

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 73
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  ++ + L+  ++V
Sbjct: 74  EEPI-XIVTEYMSKGSLLDFLKGETGKYLRLPQLV 107

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  ++ + L+  ++V
Sbjct: 250 EEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLV 283

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 389 KNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           +N +    LG G FG V               QVAVK  KE       +    E+ +++Q
Sbjct: 45  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 104
Query: 443 I-NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           + +H+N+V +LG C  +    L++E+   G L +++ SK  +
Sbjct: 105 LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREK 146

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  ++ + L+  ++V
Sbjct: 250 EEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLV 283

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  ++ T+VAVK  K        Q F  E  ++  + H  +V++  +  
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLKPG--TMSVQAFLEEANLMKTLQHDKLVRLYAVVT 78
Query: 457 QTKVPLLVYEFVSNGTLFHHIHS 479
           + +   ++ E+++ G+L   + S
Sbjct: 79  REEPIYIITEYMAKGSLLDFLKS 101

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 10  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 69
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E + NG+L   +    +Q
Sbjct: 70  IMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQ 114

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ +I H+ +V++  +  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKIRHEKLVQLYAVVS 83
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 84  EEPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLV 117

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K  +     + F  E  ++ ++ H+ +V++  +  
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 250
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 251 EEPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLV 284

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           GY CLC  GFQ      C DIDEC++ +   C   C N  G Y C C  G   D
Sbjct: 332 GYECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLD 383

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 35  LGEGCFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 91
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 92  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 127

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 388 TKNYDKSNF-----LGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMG 438
            K  D +N      +G G FG V  G L      +  VA+K  K     +  ++F  E  
Sbjct: 39  AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEAS 98
Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           I+ Q +H N++++ G+  ++K  ++V E + NG+L   +    +Q
Sbjct: 99  IMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQ 143

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEM 437
           A+ + AT N      +G G FG V  G L      +  VA+K  K     +  ++F  E 
Sbjct: 39  AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97
Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            I+ Q +H N++++ G+  ++K  ++V E + NG+L   +    +Q
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQ 143

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 32  LGEGCFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 88
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 89  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 124

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 30  LGEGCFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 86
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 87  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 122

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           GY CLC  GFQ      C DIDEC++ +   C   C N  G Y C C  G   D
Sbjct: 314 GYECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLD 365

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 89  LGEGCFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 145
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++ E+ S G L  ++ ++
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 181

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  ++ + L+  ++V
Sbjct: 250 EEPI-YIVGEYMSKGSLLDFLKGETGKYLRLPQLV 283

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQ-----------EFQHEMGIVSQI-N 444
           LGEG FG V   V+++   +   KPKEA  + V             +   EM ++  I  
Sbjct: 43  LGEGAFGQV---VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99
Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           HKN++ +LG C Q     ++  + S G L  ++ ++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVAYASKGNLREYLRAR 135

>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = 107

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 221 LSDYD-KSSSNAKIEWVVKEGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGN 279
           +SDYD  ++ N   +  +   +C D+     + C D           GY CLC  GFQ  
Sbjct: 10  MSDYDIPTTENLYFQGAMGTNECLDNNGGCSHVCNDLKI--------GYECLCPDGFQLV 61
Query: 280 PYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
               C DIDEC++ +   C   C N  G Y C C  G   D
Sbjct: 62  AQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLD 100

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 74
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 75  EEPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLV 108

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 394 SNFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
            + +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++ +H N++
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
            +LG C       L  E+  +G L   +  + S+VL+T
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNLLDFL--RKSRVLET 125

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 72
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 73  EEPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLV 106

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 84  EEPI-YIVIEYMSKGSLLDFLKGEMGKYLRLPQLV 117

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 394 SNFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
            + +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++ +H N++
Sbjct: 20  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
            +LG C       L  E+  +G L   +  + S+VL+T
Sbjct: 80  NLLGACEHRGYLYLAIEYAPHGNLLDFL--RKSRVLET 115

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +  +  +V E++S G+L   +  +  + L+  ++V
Sbjct: 84  EEPI-YIVIEYMSKGSLLDFLKGEMGKYLRLPQLV 117

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK 446
            +++D    LGEG +G V   V    +  VAVK       +   +  + E+ I   +NH+
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHE 64
Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           NVVK  G   +  +  L  E+ S G LF  I  
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 394 SNFLGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
            + +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++ +H N++
Sbjct: 27  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKT 487
            +LG C       L  E+  +G L   +  + S+VL+T
Sbjct: 87  NLLGACEHRGYLYLAIEYAPHGNLLDFL--RKSRVLET 122

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK 446
            +++D    LGEG +G V   V    +  VAVK       +   +  + E+ I + +NH+
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINAMLNHE 65
Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
           NVVK  G   +  +  L  E+ S G LF  I
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRI 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	491
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-37
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-34
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-34
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-19
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-18
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-18
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-18
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-18
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-17
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-17
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-17
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-17
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-17
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-17
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	5e-17
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	6e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	8e-17
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-17
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-16
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-16
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-16
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-16
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-16
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-16
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-16
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-16
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-16
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	9e-16
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-08
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-15
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-15
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-15
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-15
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-15
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-15
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-15
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-15
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-15
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	4e-15
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	4e-15
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-15
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-15
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	7e-15
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	9e-15
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	9e-15
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-14
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-14
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-14
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-14
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-14
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-14
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-14
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	3e-14
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	4e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-14
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-14
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-14
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-14
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	8e-14
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-14
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	9e-14
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	4e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-04
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	9e-14
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-13
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-11
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-10
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-05
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	1e-12
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	8e-07
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-12
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	3e-12
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	9e-10
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-12
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-12
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-12
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-11
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-11
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-11
2bou_A	143	EGF-like module containing mucin-like hormone rece	3e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-11
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-11
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	1e-10
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	3e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-10
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-10
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-10
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-10
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-10
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-09
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-09
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	4e-09
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	5e-09
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-09
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	5e-09
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-09
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	7e-09
3bhy_A	283	Death-associated protein kinase 3; death associate	7e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	8e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	1e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-08
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-08
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-08
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-08
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-08
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-08
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	3e-08
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-08
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	4e-08
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	7e-08
1aut_L	114	Activated protein C; serine proteinase, plasma cal	7e-08
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-07
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-07
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-07
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-07
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	4e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	4e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	6e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-07
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-07
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-07
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	6e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	6e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	8e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	8e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	8e-07
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	9e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-06
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-06
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-06
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-06
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-04
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-06
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-06
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-06
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	4e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-06
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	5e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	7e-06
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	7e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	7e-06
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	1e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-05
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-05
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-05
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-05
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-05
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-05
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-05
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-05
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	2e-05
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-04
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-04
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	6e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	6e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	8e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	8e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	8e-05
1nzi_A	159	Complement C1S component; calcium, innate immunity	1e-04
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-04
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-04
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-04
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	2e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-04
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	7e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	7e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	8e-04
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	9e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  138 bits (349), Expect = 4e-37
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 375 RVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQ 434
           +++ FS  EL  A+ N+   N LG GGFG VY+G L+D T VAVK+ KE        +FQ
Sbjct: 16  QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQ 75

Query: 435 HEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK-TWKI 490
            E+ ++S   H+N++++ G C+     LLVY +++NG++   +  +        W  
Sbjct: 76  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPK 132

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  131 bits (331), Expect = 1e-34
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHE 436
                 +L +AT N+D    +G G FG VY+GVL D  +VA+K+       +  +EF+ E
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS-QGIEEFETE 85

Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK-TWKI 490
           +  +S   H ++V ++G C +    +L+Y+++ NG L  H++      +  +W+ 
Sbjct: 86  IETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQ 140

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  130 bits (330), Expect = 1e-34
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 10/125 (8%)

Query: 375 RVRIFSEAELIKATKNYDK------SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIR 428
           R   FS  EL   T N+D+       N +GEGGFG VY+G + ++T VAVKK      I 
Sbjct: 11  RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT 69

Query: 429 VSQ---EFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
             +   +F  E+ ++++  H+N+V++LG         LVY ++ NG+L   +        
Sbjct: 70  TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP 129

Query: 486 KTWKI 490
            +W +
Sbjct: 130 LSWHM 134

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 11/102 (10%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKK------PKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           +G+GGFG V++G  + D + VA+K         E + I   QEFQ E+ I+S +NH N+V
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           K+ GL      P +V EFV  G L+H +  K+  +   W + 
Sbjct: 87  KLYGLM--HNPPRMVMEFVPCGDLYHRLLDKAHPI--KWSVK 124

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMG 438
                L   +           G FG V++  L  +  VAVK     DK   S + ++E+ 
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDK--QSWQNEYEVY 70

Query: 439 IVSQINHKNVVKILGLCLQ----TKVPLLVYEFVSNGTLFHHIHSKS 481
            +  + H+N+++ +G   +         L+  F   G+L   + +  
Sbjct: 71  SLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANV 117

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQINHKNVVKILGLC 455
           L E   G +++G       + VK  K  D   R S++F  E   +   +H NV+ +LG C
Sbjct: 18  LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76

Query: 456 LQTKVPLL--VYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
                P    +  ++  G+L++ +H  ++ V+   + V
Sbjct: 77  QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAV 114

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V +        VA+K+ +   +    + F  E+  +S++NH N+VK+ G CL
Sbjct: 16  VGRGAFGVVCKAKW-RAKDVAIKQIESESER---KAFIVELRQLSRVNHPNIVKLYGACL 71

Query: 457 QTKVPL-LVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
               P+ LV E+   G+L++ +H        T    
Sbjct: 72  N---PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHA 104

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+V+R      + VAVK   E D       EF  E+ I+ ++ H N+V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            Q     +V E++S G+L+  +H   ++     +  
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRR 139

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKK---PKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           +G GGFG VYR       +VAVK      + D  +  +  + E  + + + H N++ + G
Sbjct: 15  IGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           +CL+     LV EF   G L   +  K 
Sbjct: 74  VCLKEPNLCLVMEFARGGPLNRVLSGKR 101

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG VY GV         +T+VA+K   EA  +R   EF +E  ++ + N  +VV+
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +LG+  Q +  L++ E ++ G L
Sbjct: 93  LLGVVSQGQPTLVIMELMTRGDL 115

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 397 LGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D        AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 92

Query: 453 GLCLQTKVPLL-VYEFVSNGTLFHHIHSKSSQ 483
           G+CL+++   L V  ++ +G L + I +++  
Sbjct: 93  GICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 124

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+ NH+N+V+
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
            +G+ LQ+    ++ E ++ G L
Sbjct: 98  CIGVSLQSLPRFILMELMAGGDL 120

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 397 LGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG VY G L D        AVK       I    +F  E  I+   +H NV+ +L
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 156

Query: 453 GLCLQTKVPLL-VYEFVSNGTLFHHIHSKSSQ 483
           G+CL+++   L V  ++ +G L + I +++  
Sbjct: 157 GICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 188

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG G FG VY G +S         QVAVK   E    +   +F  E  I+S+ NH+N+V+
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
            +G+ LQ+    ++ E ++ G L
Sbjct: 139 CIGVSLQSLPRFILLELMAGGDL 161

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  KEA +    Q+FQ E  +++ + H+++V+
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTMLQHQHIVR 107

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
             G+C + +  L+V+E++ +G L
Sbjct: 108 FFGVCTEGRPLLMVFEYMRHGDL 130

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           +GEG FG V++            T VAVK  KE     +  +FQ E  ++++ ++ N+VK
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +LG+C   K   L++E+++ G L
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDL 137

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 81.1 bits (201), Expect = 4e-17
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 13/113 (11%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDD-----TQVAVKKPKEADKIRVSQ 431
           RI  E E  K          LG G FG+VY+G+   +       VA+K+ +EA   + ++
Sbjct: 10  RILKETEFKKIKV-------LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 62

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           E   E  +++ +++ +V ++LG+CL + V  L+ + +  G L  ++      +
Sbjct: 63  EILDEAYVMASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKDNI 114

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 80.7 bits (200), Expect = 5e-17
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V +            T VAVK  KE       ++   E  ++ Q+NH +V+K
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           + G C Q    LL+ E+   G+L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 80.7 bits (199), Expect = 6e-17
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMG 438
            + +E      N      +G G +G+VY+G L D+  VAVK    A++    Q F +E  
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR----QNFINEKN 57

Query: 439 I--VSQINHKNVVKILGLCLQTKVP-----LLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           I  V  + H N+ + +    +         LLV E+  NG+L  ++   +S  + + ++
Sbjct: 58  IYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRL 116

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 397 LGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G+G FG VY G   D      Q A+K      +++  + F  E  ++  +NH NV+ ++
Sbjct: 29  IGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALI 88

Query: 453 GLCLQTK-VPLLVYEFVSNGTLFHHIHSKSSQ 483
           G+ L  + +P ++  ++ +G L   I S    
Sbjct: 89  GIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRN 120

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 79.6 bits (197), Expect = 9e-17
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FG V+           D   VAVK  K+       ++FQ E  +++ + H+++VK
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL-AARKDFQREAELLTNLQHEHIVK 81

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
             G+C      ++V+E++ +G L
Sbjct: 82  FYGVCGDGDPLIMVFEYMKHGDL 104

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGE  FG VY+G L           VA+K  K+  +  + +EF+HE  + +++ H NVV 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +LG+  + +   +++ + S+G L
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDL 99

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G+G FG VY G    +  VA++            + F+ E+    Q  H+NVV  +G C
Sbjct: 41  IGKGRFGQVYHGRWHGE--VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGAC 98

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           +      ++       TL+  +      
Sbjct: 99  MSPPHLAIITSLCKGRTLYSVVRDAKIV 126

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 13/113 (11%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDD-----TQVAVKKPKEADKIRVSQ 431
           RI  E E  K          LG G FG+VY+G+   +       VA+K+ +EA   + ++
Sbjct: 10  RILKETEFKKIKV-------LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 62

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           E   E  +++ +++ +V ++LG+CL + V  L+ + +  G L  ++      +
Sbjct: 63  EILDEAYVMASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKDNI 114

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG V+ G L +D+T VAVK  +E     +  +F  E  I+ Q +H N+V+++G+C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
            Q +   +V E V  G     + ++ +++
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGARL 210

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHE 436
           RIF  ++LI           LG+G FG   +    +  +V V K          + F  E
Sbjct: 5   RIFRPSDLIHGEV-------LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKE 57

Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           + ++  + H NV+K +G+  + K    + E++  GTL   I S  SQ    W 
Sbjct: 58  VKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQY--PWS 108

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VAVK  KE        EF  E   + +++H  +VK  G+C 
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE--DEFFQEAQTMMKLSHPKLVKFYGVCS 73

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +     +V E++SNG L +++ S    +
Sbjct: 74  KEYPIYIVTEYISNGCLLNYLRSHGKGL 101

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +V++ G+C 
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE--DEFIEEAKVMMNLSHEKLVQLYGVCT 89

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           + +   ++ E+++NG L +++     + 
Sbjct: 90  KQRPIFIITEYMANGCLLNYLREMRHRF 117

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-RVSQEFQHEMGIVSQINHKNVVKILGLC 455
           +G G FG+VY+G    D  VAVK         +  Q F++E+G++ +  H N++  +G  
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 456 LQTKVPL-LVYEFVSNGTLFHHIHSKSSQV 484
             T   L +V ++    +L+HH+H+  ++ 
Sbjct: 90  --TAPQLAIVTQWCEGSSLYHHLHASETKF 117

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +V++ G+CL
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEVMMKLSHPKLVQLYGVCL 73

Query: 457 QTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +     LV EF+ +G L  ++ ++    
Sbjct: 74  EQAPICLVTEFMEHGCLSDYLRTQRGLF 101

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 77.4 bits (191), Expect = 9e-16
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 373 HQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDD-----TQVAVKKPKEADKI 427
               RIF E EL K          LG G FG+V++GV   +       V +K  ++    
Sbjct: 4   KVLARIFKETELRKLKV-------LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR 56

Query: 428 RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +  Q     M  +  ++H ++V++LGLC  + +  LV +++  G+L  H+      +
Sbjct: 57  QSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSL-QLVTQYLPLGSLLDHVRQHRGAL 112

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 253 CGDNTNCDYSE--NGEG-YRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNY 309
           C +   C + +  N +G YRC C  G+       C D DEC         GTCKN  G +
Sbjct: 8   CKEPDVCKHGQCINTDGSYRCECPFGYILAGN-ECVDTDECSVG-NPCGNGTCKNVIGGF 65

Query: 310 TCDCPIGMHGDGKVSCQ 326
            C C  G      ++C+
Sbjct: 66  ECTCEEGFEPGPMMTCE 82

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 284 CHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQ 326
             D+DECKE       G C NT G+Y C+CP G    G   C 
Sbjct: 2   AVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGN-ECV 42

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 397 LGEGGFGSVYRGVL--------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           LG+G F  +++GV           +T+V +K   +A     S+ F     ++S+++HK++
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH-RNYSESFFEAASMMSKLSHKHL 74

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           V   G+C+     +LV EFV  G+L  ++    + +   WK+
Sbjct: 75  VLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKL 116

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V           +    VAVK  KE       +    E+ I+  I +H NVV
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94

Query: 450 KILGLCLQTKVPL-LVYEFVSNGTL 473
            +LG C +   PL ++ EF   G L
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNL 119

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG G +G VY GV       VAVK  KE       +EF  E  ++ +I H N+V++LG+C
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAVMKEIKHPNLVQLLGVC 78

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            +     ++ EF++ G L  ++   + Q +    ++
Sbjct: 79  TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLL 114

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 397 LGEGGFGSVYRGVLSDD---TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKIL 452
           +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++ +H N++ +L
Sbjct: 33  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 92

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G C       L  E+  +G L
Sbjct: 93  GACEHRGYLYLAIEYAPHGNL 113

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 397 LGEGGFGSVYRGVLSDD----TQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FGSV    L  +     +VAVK  K        + +EF  E   + + +H +V K
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDI-EEFLREAACMKEFDHPHVAK 89

Query: 451 ILGLCLQ------TKVPLLVYEFVSNGTL 473
           ++G+ L+        +P+++  F+ +G L
Sbjct: 90  LVGVSLRSRAKGRLPIPMVILPFMKHGDL 118

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +V++  +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP--DAFLAEANLMKQLQHQRLVRLYAVV- 77

Query: 457 QTKVPLL-VYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            T+ P+  + E++ NG+L   + + S   L   K++
Sbjct: 78  -TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLL 112

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G+G FG V  G      +VAVK  K       +Q F  E  +++Q+ H N+V++LG+ +
Sbjct: 29  IGKGEFGDVMLGDY-RGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIV 84

Query: 457 QTKVPL-LVYEFVSNGTLFHHIHSKSSQVLK 486
           + K  L +V E+++ G+L  ++ S+   VL 
Sbjct: 85  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG 115

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 397 LGEGGFGSVYRGVLSD--------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKN 447
           LGEG FG V                  VAVK  K+    +   +   EM ++  I  HKN
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTL 473
           ++ +LG C Q     ++ E+ S G L
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNL 128

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 397 LGEGGFGSVYRGVLSDD----TQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LGEG FGSV  G L  +     +VAVK  K   + + R  +EF  E   +   +H NV++
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQ-REIEEFLSEAACMKDFSHPNVIR 100

Query: 451 ILGLCLQTK-----VPLLVYEFVSNGTL 473
           +LG+C++        P+++  F+  G L
Sbjct: 101 LLGVCIEMSSQGIPKPMVILPFMKYGDL 128

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 397 LGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGEG FG V          +   QVAVK  K         + + E+ I+  + H+N+VK 
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88

Query: 452 LGLCLQTKVP--LLVYEFVSNGTL 473
            G+C +       L+ EF+ +G+L
Sbjct: 89  KGICTEDGGNGIKLIMEFLPSGSL 112

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 397 LGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           LGEG FG V               VAVK  K     +    ++ E+ I+  + H++++K 
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98

Query: 452 LGLCLQTKVP--LLVYEFVSNGTL 473
            G C         LV E+V  G+L
Sbjct: 99  KGCCEDAGAASLQLVMEYVPLGSL 122

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 75.5 bits (186), Expect = 6e-15
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 397 LGEGGFGSVYRGVLSD--------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKN 447
           LGEG FG V                  VAVK  K+    +   +   EM ++  I  HKN
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTL 473
           ++ +LG C Q     ++ E+ S G L
Sbjct: 149 IINLLGACTQDGPLYVIVEYASKGNL 174

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +GEG FG V++G+          VA+K  K      V ++F  E   + Q +H ++VK++
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           G+  +  V  ++ E  + G L   +  +   +
Sbjct: 458 GVITENPV-WIIMELCTLGELRSFLQVRKFSL 488

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 75.5 bits (186), Expect = 7e-15
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG G FG V+    +  T+VAVK  K        + F  E  ++  + H  +VK+  +  
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSV--EAFLAEANVMKTLQHDKLVKLHAVV- 252

Query: 457 QTKVPL-LVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            TK P+ ++ EF++ G+L   + S         K++
Sbjct: 253 -TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLI 287

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 397 LGEGGFGSVYRGVL--------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKN 447
           LGEG FG V             +  T+VAVK  K     +   +   EM ++  I  HKN
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTL 473
           ++ +LG C Q     ++ E+ S G L
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNL 162

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 74.3 bits (183), Expect = 9e-15
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 397 LGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G  G V  G L      D  VA+K  K     R  ++F  E  I+ Q +H N++++ 
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE 116

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           G+  + ++ ++V E++ NG+L   + +   Q 
Sbjct: 117 GVVTRGRLAMIVTEYMENGSLDTFLRTHDGQF 148

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 397 LGEGGFGSVYRGVL----SDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG+G FG V RG           VAVK  KP    +     +F  E+  +  ++H+N+++
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85

Query: 451 ILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           + G+ L   +  +V E    G+L   +       
Sbjct: 86  LYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGHF 118

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQ 431
            IF E  L   ++       LG+G FGSV          +    VAVK+ +        +
Sbjct: 18  TIFEERHLKYISQ-------LGKGNFGSVELCRYDPLGDNTGALVAVKQLQH-SGPDQQR 69

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKV-PL-LVYEFVSNGTL 473
           +FQ E+ I+  ++   +VK  G+        L LV E++ +G L
Sbjct: 70  DFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCL 113

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V               QVAVK  KE       +    E+ +++Q+ +H+N+V
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIV 112

Query: 450 KILGLCLQTKVPLLVYEFVSNGTL 473
            +LG C  +    L++E+   G L
Sbjct: 113 NLLGACTLSGPIYLIFEYCCYGDL 136

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 397 LGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LG G FGSV +GV         VA+K  K+  +   ++E   E  I+ Q+++  +V+++G
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +C    + +LV E    G L   +  K  ++
Sbjct: 78  VCQAEAL-MLVMEMAGGGPLHKFLVGKREEI 107

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP--EAFLQEAQVMKKLRHEKLVQLYAVV- 248

Query: 457 QTKVPL-LVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            ++ P+ +V E++S G+L   +  ++ + L+  ++V
Sbjct: 249 -SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV 283

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V                VAVK  K +  +   +    E+ ++S + NH N+V
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIV 90

Query: 450 KILGLCLQTKVPLLVYEFVSNGTL 473
            +LG C      L++ E+   G L
Sbjct: 91  NLLGACTIGGPTLVITEYCCYGDL 114

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +V++  +  
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP--EAFLQEAQVMKKLRHEKLVQLYAVV- 331

Query: 457 QTKVPL-LVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            ++ P+ +V E++S G+L   +  ++ + L+  ++V
Sbjct: 332 -SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV 366

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 397 LGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +GEG FG V++G+          VA+K  K      V ++F  E   + Q +H ++VK++
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+  +  V  ++ E  + G L
Sbjct: 83  GVITENPV-WIIMELCTLGEL 102

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G+G FG V  G      +VAVK  K       +Q F  E  +++Q+ H N+V++LG+ +
Sbjct: 201 IGKGEFGDVMLGDYRG-NKVAVKCIKNDAT---AQAFLAEASVMTQLRHSNLVQLLGVIV 256

Query: 457 QTKVPL-LVYEFVSNGTLFHHIHSKSSQVLK 486
           + K  L +V E+++ G+L  ++ S+   VL 
Sbjct: 257 EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG 287

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 255 DNTNCDYSE--NGEG-YRCLCKPGFQGNPYLG--CHDIDECKEKERYHCEGTCKNTFGNY 309
               C   +  N  G + C C  G++    +   C DIDEC+        G C NT G+Y
Sbjct: 9   SPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSY 68

Query: 310 TCDCPIG--MHGDGKVSC 325
            C+CP G  +  +   +C
Sbjct: 69  RCECPPGHQLSPNIS-AC 85

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG 321
           DIDEC+        G C NT G++ C C  G     
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 397 LGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           +G G FG V  G L      +  VA+K  K     +  ++F  E  I+ Q +H N++++ 
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLE 112

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           G+  ++K  ++V E++ NG+L   +    +Q
Sbjct: 113 GVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ 143

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 397 LGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           +G G FG VY+G+L       +  VA+K  K     +   +F  E GI+ Q +H N++++
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
            G+  + K  +++ E++ NG L   +  K  +
Sbjct: 112 EGVISKYKPMMIITEYMENGALDKFLREKDGE 143

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQ 431
             F E  L    +       LG+G FGSV          +    VAVKK +        +
Sbjct: 5   TQFEERHLKFLQQ-------LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLR 56

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQT-KVPL-LVYEFVSNGTL 473
           +F+ E+ I+  + H N+VK  G+C    +  L L+ E++  G+L
Sbjct: 57  DFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 397 LGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V               +VAVK  K        +    E+ I+S +  H+N+V
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
            +LG C      L++ E+   G L + +  KS
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKS 145

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 368 GMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPK 422
           G   + +    F E  L    +       LG+G FGSV          +    VAVKK +
Sbjct: 27  GSAFEDRDPTQFEERHLKFLQQ-------LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ 79

Query: 423 EADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV-PL-LVYEFVSNGTL 473
                   ++F+ E+ I+  + H N+VK  G+C       L L+ E++  G+L
Sbjct: 80  H-STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 131

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 73.1 bits (179), Expect = 6e-14
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 397 LGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LG G FGSV +GV         VA+K  K+  +   ++E   E  I+ Q+++  +V+++G
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           +C    + +LV E    G L   +  K  ++
Sbjct: 404 VCQAEAL-MLVMEMAGGGPLHKFLVGKREEI 433

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 397 LGEGGFGSVYRGVL---SDDTQVAVKKPKE-ADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LG G FG+V +G          VAVK  K  A+   +  E   E  ++ Q+++  +V+++
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 453 GLCLQTKVPLLVYEFVSNGTL 473
           G+C      +LV E    G L
Sbjct: 85  GICEAESW-MLVMEMAELGPL 104

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 397 LGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC 455
           LG G +G VY GV       VAVK  KE       +EF  E  ++ +I H N+V++LG+C
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAVMKEIKHPNLVQLLGVC 285

Query: 456 LQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            +     ++ EF++ G L  ++   + Q +    ++
Sbjct: 286 TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLL 321

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 67.8 bits (166), Expect = 9e-14
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 253 CGDNTNCDYSENGEG-YRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTC 311
           C        S         +C  G+       C DIDEC+        G C NT G++ C
Sbjct: 72  CSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKC 131

Query: 312 DCPIGMHGDG 321
            CP GM  D 
Sbjct: 132 QCPSGMTLDA 141

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 253 CGDNTNCDYS-ENGEG-YRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYT 310
           C  +   +   +N  G + C C      +P      I+          +GTC  T  +  
Sbjct: 7   CESSPCINGVCKNSPGSFICECSSESTLDPT-KTICIETI--------KGTCWQTVIDGR 57

Query: 311 CDCPIGMHGDGKVSCQ 326
           C+  I         C 
Sbjct: 58  CEININGATLKSQCCS 73

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG 321
           DIDEC+        G CKN+ G++ C+C      D 
Sbjct: 3   DIDECES--SPCINGVCKNSPGSFICECSSESTLDP 36

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 70.7 bits (174), Expect = 9e-14
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 397 LGEGGFGSVYRGVL----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LGEG FG VY GV      +   VAVK  K+   +   ++F  E  I+  ++H ++VK++
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           G+  +     ++ E    G L H++    + +
Sbjct: 80  GIIEEEPT-WIIMELYPYGELGHYLERNKNSL 110

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 240 GKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPY-LGCHDIDECKEKERYHC 298
             C     +    C      + SE      C    GF+ NP  +   DIDEC+E      
Sbjct: 76  SCCCSLGKAWGTPCEMCPAVNTSEYK--ILCPGGEGFRPNPITVILEDIDECQELPGLCQ 133

Query: 299 EGTCKNTFGNYTCDCPIGMHGDG 321
            G C NTFG++ C CP G + + 
Sbjct: 134 GGKCINTFGSFQCRCPTGYYLNE 156

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 253 CGDNTNCDYS--ENGEG-YRCLCKPGFQGNPY-LGCHDIDECKEKERYHCEGTCKNTFGN 308
           C D T C      N  G Y C C P F+ NP  +GC D          + +   +   G+
Sbjct: 6   CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGDNGD 61

Query: 309 YTCDCPIGMHGDGKVSCQ 326
             C   IG+       C 
Sbjct: 62  TACSNEIGVGVSKASCCC 79

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 8/77 (10%), Positives = 16/77 (20%), Gaps = 6/77 (7%)

Query: 252 RCGDNTNCDYSENGEG-YRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYT 310
            C  +          G   C  + G   +    C  + +               +     
Sbjct: 48  NCYLDIRP---RGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPC-EMCPAVNTSEYKIL 103

Query: 311 CDCPIGMHGDG-KVSCQ 326
           C    G   +   V  +
Sbjct: 104 CPGGEGFRPNPITVILE 120

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG 321
           D++EC +       G C NT G+Y CDCP     + 
Sbjct: 2   DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNP 36

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 243 PDDQNSNVYRCGDNTNCDYS-ENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGT 301
           P + +     C + T C    +      C C  G+  +    C DIDEC+      C G 
Sbjct: 36  PHEPHRCQMFC-NQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGG--FCSGV 92

Query: 302 CKNTFGNYTCDCPIG--MHGDGKVSC 325
           C N  G + C C     + G     C
Sbjct: 93  CHNLPGTFECICGPDSALAGQIGTDC 118

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQ 326
            Y C+C  GF   P+        C    +  C   C       +C+CP G   D    C 
Sbjct: 23  SYLCVCAEGFAPIPHEPHRCQMFC---NQTACPADCDPN-TQASCECPEGYILDDGFICT 78

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G+G +G V+ G      +VAVK     ++   S   + E+     + H+N++  +   +
Sbjct: 45  IGKGRYGEVWMGKW-RGEKVAVKVFFTTEE--ASWFRETEIYQTVLMRHENILGFIAADI 101

Query: 457 QTKVP----LLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           +         L+ ++  NG+L+ ++ S +       K+
Sbjct: 102 KGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKL 139

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 242 CPDDQNSNVYRCGDNTNCDYSENG---------EGYRCLCKPGFQGNPYLGCHDIDECKE 292
            P  +N           C  +  G          GY CLC  GFQ      C DIDEC++
Sbjct: 15  IPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 74

Query: 293 KERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
            +   C   C N  G Y C C  G  +    K +C+
Sbjct: 75  PDT--CSQLCVNLEGGYKCQCEEGFQLDPHTK-ACK 107

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 4/60 (6%)

Query: 267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQ 326
            Y              G    +EC       C   C +    Y C CP G     +  C+
Sbjct: 12  DYDIPTTENLYFQ---GAMGTNEC-LDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE 67

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G+G +G V+RG       VAVK     D+    +E   E+     + H+N++  +   +
Sbjct: 16  VGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRET--ELYNTVMLRHENILGFIASDM 72

Query: 457 QTKVP----LLVYEFVSNGTLFHHIHSKS 481
            ++       L+  +   G+L+ ++   +
Sbjct: 73  TSRHSSTQLWLITHYHEMGSLYDYLQLTT 101

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGI--VSQINHKNVVKILGL 454
           +G+G FG V+RG      +VAVK     ++    + +  E  I     + H+N++  +  
Sbjct: 50  IGKGRFGEVWRGKW-RGEEVAVKIFSSREE----RSWFREAEIYQTVMLRHENILGFIAA 104

Query: 455 CLQTKVP----LLVYEFVSNGTLFHHIHSKS 481
             +         LV ++  +G+LF +++  +
Sbjct: 105 DNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT 135

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 397 LGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVV 449
           LG G FG V           +    VAVK  KE       +    E+ I+  I +H NVV
Sbjct: 30  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 89

Query: 450 KILGLCLQTKVPLLV-YEFVSNGTLFHHIHSKSSQVLKTW 488
            +LG C +   PL+V  EF   G L  ++ SK ++ +   
Sbjct: 90  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK 129

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
                  LG+G +G VY G    +   +A+K+  E D  R SQ    E+ +   + HKN+
Sbjct: 23  ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-RYSQPLHEEIALHKHLKHKNI 81

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTL 473
           V+ LG   +     +  E V  G+L
Sbjct: 82  VQYLGSFSENGFIKIFMEQVPGGSL 106

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 246 QNSNVYRCGDNTNCDYSENGEG-YRCLCKPGFQGNPYLG---------CHDIDECKEKER 295
              +   CG  ++C    N EG Y C+C PG++               C D+DEC   + 
Sbjct: 48  ATLSKVSCGKFSDC---WNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQH 104

Query: 296 Y-HCEGTCKNTFGNYTCDCPIGMHGDG 321
                  C NT G+Y+C C  G     
Sbjct: 105 QCDSSTVCFNTVGSYSCRCRPGWKPRH 131

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 13/72 (18%)

Query: 253 CGDNTNCDYSENGEGYRCLCKPGFQGN------PYLGCHDIDECKEKERYHC--EGTCKN 304
           C  +++C          C C PGF         P   C DI+EC    +  C     C N
Sbjct: 9   CPQDSSCV-----NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63

Query: 305 TFGNYTCDCPIG 316
           T G+Y C C  G
Sbjct: 64  TEGSYDCVCSPG 75

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 248 SNVYRCGDNTNCDYSENGEG-YRCLCKPGFQGNPY-LGCHDIDECK 291
           S  ++C  +T C    N  G Y C C+PG++             C+
Sbjct: 101 SGQHQCDSSTVC---FNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
             +  S+ LG+G   +V+RG         A+K       +R       E  ++ ++NHKN
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 448 VVKILGL--CLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
           +VK+  +     T+  +L+ EF   G+L+  +   S+
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSN 105

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
             +  S+ LG+G   +V+RG         A+K       +R       E  ++ ++NHKN
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 448 VVKILGL--CLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
           +VK+  +     T+  +L+ EF   G+L+  +   S+
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSN 105

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 64.3 bits (156), Expect = 4e-11
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 386 KATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN 444
           +    ++    LG GGFG V R +      QVA+K+ ++    +  + +  E+ I+ ++N
Sbjct: 11  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN 70

Query: 445 HKNVVKIL------GLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           H NVV                +PLL  E+   G L  +++  
Sbjct: 71  HPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQF 112

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQIN 444
           +++   N LG+G F  VYR   +    +VA+K   K K   K  + Q  Q+E+ I  Q+ 
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDK-KAMYKAGMVQRVQNEVKIHCQLK 69

Query: 445 HKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           H +++++     +    + LV E   NG +  ++ ++
Sbjct: 70  HPSILELYN-YFEDSNYVYLVLEMCHNGEMNRYLKNR 105

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-KPKEA-DKIRVSQEFQHEMGIVSQINH 445
           + Y +  FLG+GGF   +           A K  PK    K    ++   E+ I   + H
Sbjct: 41  RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH 100

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           ++VV   G   +    + +V E     +L      +
Sbjct: 101 QHVVGFHG-FFEDNDFVFVVLELCRRRSLLELHKRR 135

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 62.6 bits (153), Expect = 5e-11
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-KPKEA-DKIRVSQEFQHEMGIVSQINH 445
           + Y +  FLG+GGF   +           A K  PK    K    ++   E+ I   + H
Sbjct: 15  RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH 74

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           ++VV   G   +    + +V E     +L      +
Sbjct: 75  QHVVGFHG-FFEDNDFVFVVLELCRRRSLLELHKRR 109

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 267 GYRCLCKPGFQGNP-YLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIG----MHGDG 321
            + C C  G++ N     C DIDEC E     C   C N  G YTC C       +  D 
Sbjct: 24  DFECECPEGYRYNLKSKSCEDIDECSEN---MCAQLCVNYPGGYTCYCDGKKGFKLAQDQ 80

Query: 322 KVSCQ 326
           K SC+
Sbjct: 81  K-SCE 84

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
           D+DEC  K        CKN  G++ C+CP G   +   K SC+
Sbjct: 2   DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSK-SCE 43

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 380 SEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMG 438
            + E  +          +G G FG V+R        Q AVK      K+R+      E+ 
Sbjct: 49  VDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVK------KVRLEVFRVEELV 102

Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
             + ++   +V + G   +     +  E +  G+L
Sbjct: 103 ACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL 137

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 359 KKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVA 417
            + +     GM +  ++  +         ++ Y +   LG G +G V          + A
Sbjct: 16  FQGDLQATPGMFITSKKGHL---------SEMYQRVKKLGSGAYGEVLLCRDKVTHVERA 66

Query: 418 VKK-PKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFH 475
           +K   K +     + +   E+ ++  ++H N++K+     + K    LV E    G LF 
Sbjct: 67  IKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFF-EDKRNYYLVMECYKGGELFD 125

Query: 476 HIHSKSS 482
            I  +  
Sbjct: 126 EIIHRMK 132

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK---PKEADKIRVSQEFQHEMGIVSQIN 444
           K+Y     LGEGGF  V     L D    A+K+    ++ D+    +E Q E  +    N
Sbjct: 29  KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDR----EEAQREADMHRLFN 84

Query: 445 HKNVVKILGLCLQTKVP----LLVYEFVSNGTLFHHI 477
           H N+++++  CL+ +       L+  F   GTL++ I
Sbjct: 85  HPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEI 121

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 358 RKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQV 416
               +     GM ++H              +  Y     LG+G FG V          + 
Sbjct: 4   SMMDHLHATPGMFVQHSTAIF---------SDRYKGQRVLGKGSFGEVILCKDKITGQEC 54

Query: 417 AVKK-PKEADKIRVSQE-FQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLF 474
           AVK   K   K +  +E    E+ ++ Q++H N++K+           LV E  + G LF
Sbjct: 55  AVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELF 114

Query: 475 HHIHSKSS 482
             I S+  
Sbjct: 115 DEIISRKR 122

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
           + Y     +G GG   V++ +       A+K    E    +    +++E+  ++++   +
Sbjct: 28  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87

Query: 448 --VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
             ++++    +  +   +V E   N  L   +  K
Sbjct: 88  DKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKK 121

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
             ++++   LG+G FG V +     D    A+KK     +K+        E+ +++ +NH
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKL---STILSEVMLLASLNH 61

Query: 446 KNVVKILG------------LCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           + VV+                 ++ K  L +  E+  NGTL+  IHS+
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE 109

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
            + Y+    LG+G FG V +        + AVK   K + K + +     E+ ++ +++H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            N++K+  +  +      +V E  + G LF  I  +  
Sbjct: 81  PNIMKLFEIL-EDSSSFYIVGELYTGGELFDEIIKRKR 117

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
           + Y     +G GG   V++ +       A+K    E    +    +++E+  ++++   +
Sbjct: 56  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115

Query: 448 --VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
             ++++    +  +   +V E   N  L   +  K
Sbjct: 116 DKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKK 149

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
           + Y     +G GG   V++ +       A+K    E    +    +++E+  ++++   +
Sbjct: 9   RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

Query: 448 --VVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
             ++++      T   + +V E   N  L   +  K
Sbjct: 69  DKIIRLYD-YEITDQYIYMVMEC-GNIDLNSWLKKK 102

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 29/116 (25%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI---RVSQEF 433
            I  + E    +K     + LGEG F  VY      D   A  K K   K+       EF
Sbjct: 53  AIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEAT-QGDLNDAKNKQKFVLKVQKPANPWEF 111

Query: 434 QH---EMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
                 M  +        +K     L     +LV E  S GTL + I+   +   K
Sbjct: 112 YIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEK 167

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK------PKEADKIRVSQEFQHEMGIVS 441
            N+     +G G F  VYR   L D   VA+KK           +     +   E+ ++ 
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKAR----ADCIKEIDLLK 87

Query: 442 QINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
           Q+NH NV+K     ++     +V E    G L   I
Sbjct: 88  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMI 123

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINH 445
           ++++    LG+G FG+VY          +A+K     + +K  V  + + E+ I S + H
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHI 477
            N++++ G        + L+ E+   GT++  +
Sbjct: 69  PNILRLYG-YFHDATRVYLILEYAPLGTVYREL 100

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHK 446
            ++ +   +G GGFG V++     D     +K+     +K         E+  +++++H 
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAE------REVKALAKLDHV 64

Query: 447 NVVK-------------ILGLCLQTKVPLLVY---EFVSNGTLFHHIHSKSSQVLK 486
           N+V                           ++   EF   GTL   I  +  + L 
Sbjct: 65  NIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLD 120

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
            + Y+    LG+G FG V +        + AVK   K + K + +     E+ ++ +++H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
            N++K+  +   +    +V E  + G LF  I  +  
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR 117

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 358 RKKRNFFNNGGMI-LKHQRVRIFSEAELIKATKNYDKSNF---------LGEGGFGSVYR 407
           + KR   NN   I L   R ++F   +L    ++               LG G  G V  
Sbjct: 94  KGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKL 153

Query: 408 GV-LSDDTQVAVK-------KPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK 459
                   +VA++           A +   +   + E+ I+ ++NH  ++KI        
Sbjct: 154 AFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 213

Query: 460 VPLLVYEFVSNGTLFHHIHSKSS 482
              +V E +  G LF  +     
Sbjct: 214 Y-YIVLELMEGGELFDKVVGNKR 235

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHK 446
           + Y +   +GEG FG         D  Q  +K+        +  +E + E+ +++ + H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
           N+V+      +     +V ++   G LF  I+++   + +
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQ 123

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVS 441
              YD    LG G F  V +    S   + A K     + + + +    +E + E+ I+ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 442 QINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
           Q+ H N++ +  +  + +  + L+ E VS G LF  +  K S
Sbjct: 71  QVLHPNIITLHDVY-ENRTDVVLILELVSGGELFDFLAQKES 111

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQI 443
              YD    LG G FG V+R V  +       K    P   DK       ++E+ I++Q+
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDK----YTVKNEISIMNQL 105

Query: 444 NHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           +H  ++ +     + K  + L+ EF+S G LF  I ++
Sbjct: 106 HHPKLINLHDAF-EDKYEMVLILEFLSGGELFDRIAAE 142

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVS 441
             +Y+    LG G F  V +        + A K     +   + +    +E + E+ I+ 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 442 QINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
           +I H N++ +  +  + K  + L+ E VS G LF  +  K S
Sbjct: 64  EIRHPNIITLHDIF-ENKTDVVLILELVSGGELFDFLAEKES 104

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 16/116 (13%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
            +++    LG GGFG V+      DD   A+K+ +  ++    ++   E+  ++++ H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 448 VVK---------ILGLCLQTKVPLLVY---EFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +V+                +   + +Y   +      L   ++ + +   +   + 
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVC 120

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 55.6 bits (135), Expect = 8e-09
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
           + NYD    LG+G F  V R V  +   + A K    +    R  Q+ + E  I  ++ H
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            N+V++     Q +    LV++ V+ G LF  I ++  
Sbjct: 65  PNIVRLHDSI-QEESFHYLVFDLVTGGELFEDIVAREF 101

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 24/142 (16%)

Query: 355 RERRKKRNFFNNGGMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDD 413
           RE    +    N GM ++ +  +I          ++Y K   LG G +G V      +  
Sbjct: 11  RENLYFQGIAINPGMYVRKKEGKI---------GESYFKVRKLGSGAYGEVLLCKEKNGH 61

Query: 414 TQVAVK------------KPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP 461
           ++ A+K                 +  +  +E  +E+ ++  ++H N++K+  +  + K  
Sbjct: 62  SEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVF-EDKKY 120

Query: 462 L-LVYEFVSNGTLFHHIHSKSS 482
             LV EF   G LF  I ++  
Sbjct: 121 FYLVTEFYEGGELFEQIINRHK 142

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHK 446
           ++D    LG+G FG+VY      +   +A+K     + +K  V  + + E+ I S + H 
Sbjct: 15  DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHP 74

Query: 447 NVVKILGLCLQTKVPL-LVYEFVSNGTLFHHI 477
           N++++       +  + L+ EF   G L+  +
Sbjct: 75  NILRMYN-YFHDRKRIYLMLEFAPRGELYKEL 105

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQI 443
             +YD    LG G FG V+R    +     A K    P E+DK    +  + E+  +S +
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDK----ETVRKEIQTMSVL 211

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHI 477
            H  +V +          +++YEF+S G LF  +
Sbjct: 212 RHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKV 245

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQE-FQHEMGIVSQ 442
            K Y     +G+G +G V   +        A+K   K K         E  + E+ ++ +
Sbjct: 25  QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK 84

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           ++H N+ ++  +    +   LV E    G L   ++  
Sbjct: 85  LHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVF 122

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVS 441
              YD    LG G F  V +    S   + A K     + + + +    +E + E+ I+ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 442 QINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
           Q+ H NV+ +  +  + +  + L+ E VS G LF  +  K S
Sbjct: 71  QVLHHNVITLHDVY-ENRTDVVLILELVSGGELFDFLAQKES 111

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVS 441
              YD    LG G F  V +    S   Q A K     + K + +    ++ + E+ I+ 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 442 QINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
           +I H NV+ +  +  + K  + L+ E V+ G LF  +  K S
Sbjct: 70  EIQHPNVITLHEVY-ENKTDVILILELVAGGELFDFLAEKES 110

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
            + Y  +  LG G FG V+R V  S       K    +          + E+ I++   H
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ---VLVKKEISILNIARH 60

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           +N++ +     ++   L +++EF+S   +F  I++ 
Sbjct: 61  RNILHLHESF-ESMEELVMIFEFISGLDIFERINTS 95

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQI 443
            K +     LG G F  V+           A+K   K             ++E+ ++ +I
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRD----SSLENEIAVLKKI 63

Query: 444 NHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            H+N+V +  +  ++     LV + VS G LF  I  +  
Sbjct: 64  KHENIVTLEDIY-ESTTHYYLVMQLVSGGELFDRILERGV 102

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQE-FQHEMGIVSQ 442
              Y+    +G+G F  V R +      Q AVK     K      +S E  + E  I   
Sbjct: 23  EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHM 82

Query: 443 INHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVLK 486
           + H ++V++L     +   L +V+EF+    L   I  ++     
Sbjct: 83  LKHPHIVELLETY-SSDGMLYMVFEFMDGADLCFEIVKRADAGFV 126

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 388 TKNYD--KSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVS 441
              Y   K+  LG G FG V++    +   ++A K        DK    +E ++E+ +++
Sbjct: 86  NSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDK----EEVKNEISVMN 141

Query: 442 QINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHI 477
           Q++H N++++     ++K  + LV E+V  G LF  I
Sbjct: 142 QLDHANLIQLYD-AFESKNDIVLVMEYVDGGELFDRI 177

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 397 LGEGGFGSVYRGVLSDDT----QVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
            G       ++ +   DT    QVA+    P+      V QE       +S+I+   V +
Sbjct: 39  HGGVPPLQFWQAL---DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           +L +       L+V E++  G+L
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSL 118

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVS-QEFQHEMGIVSQINHKNVVKILGL 454
           +G G F +VY+G+ ++ T  VA  + ++    +   Q F+ E  ++  + H N+V+    
Sbjct: 34  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 93

Query: 455 CLQT---KVPLLVY-EFVSNGTL 473
              T   K  +++  E +++GTL
Sbjct: 94  WESTVKGKKCIVLVTELMTSGTL 116

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 253 CGDNTNCDYSENGEGYRCL-CKPGFQGNPYLGCHDIDECKEK----ERYHCEGTCKNTFG 307
           C     C    +G  + C  C  GF GN    C D+DEC               C NT  
Sbjct: 11  CFPGAQCSSFPDG-SWSCGFCPVGFLGNGT-HCEDLDECALVPDICFSTSKVPRCVNTQP 68

Query: 308 NYTCD-CPIGMHGDG 321
            + C  CP    G+ 
Sbjct: 69  GFHCLPCPPRYRGNQ 83

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 19/92 (20%)

Query: 253 CGDNTNCDYSENGEG-YRCL-CKPGFQGNPYLG------------CHDIDECKE-KERYH 297
           C   +      N +  + CL C P ++GN  +G            C   + CK+     H
Sbjct: 54  CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCH 113

Query: 298 CEGTCKNTF----GNYTCDCPIGMHGDGKVSC 325
               C          Y C+C  G  GDG +  
Sbjct: 114 KHAECIYLGHFSDPMYKCECQTGYAGDGLICG 145

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
           + NYD    LG+G F  V R V  +   + A K    +    R  Q+ + E  I  ++ H
Sbjct: 28  SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 87

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            N+V++     Q +    LV++ V+ G LF  I ++  
Sbjct: 88  PNIVRLHDSI-QEESFHYLVFDLVTGGELFEDIVAREF 124

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 241 KCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCE- 299
            C D++   +Y+   +       +     C C  G           +  C E     C  
Sbjct: 5   ICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQC---HSVPVKSCSEP---RCFN 58

Query: 300 -GTCKNT--FGNYTCDCPIGMHGD 320
            GTC+    F ++ C CP G  G 
Sbjct: 59  GGTCQQALYFSDFVCQCPEGFAGK 82

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK---PKEADKIRVSQEFQHEMGIVSQI 443
           T  + +   +G G FGSV++ V   D    A+K+   P         Q    E+   + +
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDE--QNALREVYAHAVL 67

Query: 444 -NHKNVVKILG-------LCLQTKVPLLVYEFVSNGTLFHHI 477
             H +VV+          + +Q        E+ + G+L   I
Sbjct: 68  GQHSHVVRYFSAWAEDDHMLIQN-------EYCNGGSLADAI 102

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-------KPKEADKIRVSQEFQHEMGI 439
              Y  S  LG G  G V          +VA+K           A +   +   + E+ I
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
           + ++NH  ++KI       +   +V E +  G LF  +     
Sbjct: 69  LKKLNHPCIIKIKNFF-DAEDYYIVLELMEGGELFDKVVGNKR 110

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
              +     LG G FG V+     S   +  +K   K+  ++ + ++ + E+ ++  ++H
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPM-EQIEAEIEVLKSLDH 79

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQ 483
            N++KI  +  +    + +V E    G L   I S  ++
Sbjct: 80  PNIIKIFEVF-EDYHNMYIVMETCEGGELLERIVSAQAR 117

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 3/79 (3%)

Query: 242 CPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGT 301
               ++     C  +  C        + C C+ G++G           C   +   C   
Sbjct: 11  VLPLEHPCASLCCGHGTCIDGIGS--FSCDCRSGWEGRFCQREVSFLNC-SLDNGGCTHY 67

Query: 302 CKNTFGNYTCDCPIGMHGD 320
           C    G   C C  G    
Sbjct: 68  CLEEVGWRRCSCAPGYKLG 86

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-KPKEADKIRVSQEFQHEMGIVSQINH 445
           T+ Y     LG+G F  V R V +    + A      +    R  Q+ + E  I   + H
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            N+V++       +    L+++ V+ G LF  I ++  
Sbjct: 70  PNIVRLHDSI-SEEGHHYLIFDLVTGGELFEDIVAREY 106

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 17/91 (18%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVS------ 441
           K Y+K +FLGEG F +VY+    + +  VA+K      KI++    + + GI        
Sbjct: 10  KRYEKLDFLGEGQFATVYKARDKNTNQIVAIK------KIKLGHRSEAKDGINRTALREI 63

Query: 442 ----QINHKNVVKILGLCLQTKVPLLVYEFV 468
               +++H N++ +L          LV++F+
Sbjct: 64  KLLQELSHPNIIGLLDAFGHKSNISLVFDFM 94

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 388 TKNYD-KSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQ 442
              Y  + + LGEG    V   + L    + AVK   K     + RV +E +    ++ Q
Sbjct: 11  EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVE----MLYQ 66

Query: 443 I-NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
              H+NV++++    +     LV+E +  G++  HIH +  
Sbjct: 67  CQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRH 107

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK--PKEADKIRVSQEFQHEMGIVSQIN 444
            + ++    LG+G FG VY+          A K    K  +++   +++  E+ I++  +
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL---EDYIVEIEILATCD 74

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           H  +VK+LG         ++ EF   G +
Sbjct: 75  HPYIVKLLGAYYHDGKLWIMIEFCPGGAV 103

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
            + Y   N +G G +G V   V      + A KK PK    +     F+ E+ I+  ++H
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPK--YFVEDVDRFKQEIEIMKSLDH 65

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            N++++     +    + LV E  + G LF  +  K  
Sbjct: 66  PNIIRLYETF-EDNTDIYLVMELCTGGELFERVVHKRV 102

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHK 446
           ++Y+    +G G +G   +    SD   +  K+    +      Q    E+ ++ ++ H 
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 447 NVVKILGLCLQTKVPLL--VYEFVSNGTLFHHI 477
           N+V+     +      L  V E+   G L   I
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 98

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 12/98 (12%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVSQI 443
           NY     +G+G F  V     +    +VA+K     +       ++ +E +    I+  +
Sbjct: 16  NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVR----IMKIL 71

Query: 444 NHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           NH N+VK+    ++T+  L L+ E+ S G +F ++ + 
Sbjct: 72  NHPNIVKLFE-VIETEKTLYLIMEYASGGEVFDYLVAH 108

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPK-EADK-------IRVSQEFQHEMGIV 440
           + Y K   +GEG +G VY+   S    VA+K+ + +A+        IR       E+ ++
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR-------EISLL 73

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFV 468
            +++H N+V ++ +    +   LV+EF+
Sbjct: 74  KELHHPNIVSLIDVIHSERCLTLVFEFM 101

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTC 311
             G +  C+  + G  Y CLC  GFQ      C DIDEC++ +   C   C N  G Y C
Sbjct: 7   NGGCSHVCNDLKIG--YECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKC 62

Query: 312 DCPIGMHGDG 321
            C  G   D 
Sbjct: 63  QCEEGFQLDP 72

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 267 GYRCLCKPGFQGNPYLGCH-DIDECKEKERYHCE--GTCKNTFGNYTCDCPIGMHGD 320
            ++C+C PG++G     C  + DEC       C   G C +    + C+CP G  G 
Sbjct: 65  EFQCICMPGYEGV---HCEVNTDEC---ASSPCLHNGRCLDKINEFQCECPTGFTGH 115

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 284 CHDIDECKEKERYHCE--GTCKNTFGNYTCDCPIGMHGD 320
             D+DEC       CE  G C NT G++ C C  G  G 
Sbjct: 2   AQDVDEC-SLGANPCEHAGKCINTLGSFECQCLQGYTGP 39

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH-KNVVKILG 453
           LG G F  V + +  S   + A K   K         E  HE+ ++        V+ +  
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 454 LCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           +  +    + L+ E+ + G +F     + ++++
Sbjct: 97  VY-ENTSEIILILEYAAGGEIFSLCLPELAEMV 128

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 267 GYRCLCKPGFQGNPYLGC-HDIDECKEKERYHCE--GTCKNTFGNYTCDCPIGMHGD 320
           GY C C  GF G     C H+I+EC   E   C+  G C +   NY+C+CP    G 
Sbjct: 79  GYVCKCPRGFNGI---HCQHNINEC---EVEPCKNGGICTDLVANYSCECPGEFMGR 129

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK--PKEADKIRVSQEFQHEMGIVSQIN 444
            K Y +   +G+G  G+VY  + ++   +VA+++   ++  K    +   +E+ ++ +  
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK---ELIINEILVMRENK 75

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           + N+V  L   L      +V E+++ G+L
Sbjct: 76  NPNIVNYLDSYLVGDELWVVMEYLAGGSL 104

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK--PKEADKIRVSQEFQHEMGIVSQIN 444
               D    +GEG  G V          QVAVK    ++  +    +   +E+ I+    
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRR---ELLFNEVVIMRDYQ 100

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTL 473
           H NVV++    L  +   ++ EF+  G L
Sbjct: 101 HFNVVEMYKSYLVGEELWVLMEFLQGGAL 129

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 267 GYRCLCKPGFQGNPYLGC-HDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
            Y C C  GF+G     C     +    +   C+  C     +  C C  G    
Sbjct: 62  EYTCTCLEGFEGK---NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 256 NTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCE--GTCKNTFGNYTCDC 313
              C Y E  E          +   +    D D+C+      C+  G CK+  G YTC C
Sbjct: 14  EETCSYEEARE-VFEDSDKTNEF--WNKYKDGDQCETSP---CQNQGKCKDGLGEYTCTC 67

Query: 314 PIGMHGD 320
             G  G 
Sbjct: 68  LEGFEGK 74

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK---PKEADKIRVSQEFQHEMGIVSQI 443
            + + K   +G+G FG V++G+       VA+K     +  D+I   ++ Q E+ ++SQ 
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEI---EDIQQEITVLSQC 77

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           +   V K  G  L+     ++ E++  G+    +   
Sbjct: 78  DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG 114

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK 446
            + +D    LGEG +GSVY+ +       VA+K+      +   QE   E+ I+ Q +  
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDL---QEIIKEISIMQQCDSP 84

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTL 473
           +VVK  G   +     +V E+   G++
Sbjct: 85  HVVKYYGSYFKNTDLWIVMEYCGAGSV 111

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINH 445
           +  ++  + LG G    VYR          A+K   K  DK    +  + E+G++ +++H
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK----KIVRTEIGVLLRLSH 107

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
            N++K+  +  +T   + LV E V+ G LF  I  K  
Sbjct: 108 PNIIKLKEIF-ETPTEISLVLELVTGGELFDRIVEKGY 144

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-------KPKEADKIRVSQEFQHEMGI 439
            + YD  + +G G    V R V  +   + AVK       +        V +  + E  I
Sbjct: 93  YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHI 152

Query: 440 VSQI-NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
           + Q+  H +++ ++     +    LV++ +  G LF ++  K +
Sbjct: 153 LRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVA 196

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVSQ 442
             Y     LG GGFGSVY G+ +SD+  VA+K     +  +  ++        E+ ++ +
Sbjct: 43  SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 102

Query: 443 INHK--NVVKILGLCLQTKVPLLVYEFVSN-GTLFHHIHSK 480
           ++     V+++L    +    +L+ E       LF  I  +
Sbjct: 103 VSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER 143

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 15/88 (17%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPK-EADK-------IRVSQEFQHEMGIV 440
           + Y     +GEG +G VY+   +     A+KK + E +        IR       E+ I+
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-------EISIL 54

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFV 468
            ++ H N+VK+  +    K  +LV+E +
Sbjct: 55  KELKHSNIVKLYDVIHTKKRLVLVFEHL 82

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 16/89 (17%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPK-EADK-------IRVSQEFQHEMGI 439
           + Y+K   +GEG +G+V++         VA+K+ + + D        +R       E+ +
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALR-------EICL 54

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFV 468
           + ++ HKN+V++  +    K   LV+EF 
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFC 83

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 16/104 (15%)

Query: 391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQH-EMGIVSQINHKNVV 449
           Y     +G G FG V++  L +  +VA+K      K+   + F++ E+ I+  + H NVV
Sbjct: 42  YTNCKVIGNGSFGVVFQAKLVESDEVAIK------KVLQDKRFKNRELQIMRIVKHPNVV 95

Query: 450 KIL-----GLCLQTKVPL-LVYEFVSNGTLFHHI--HSKSSQVL 485
            +          + +V L LV E+V   T++     ++K  Q +
Sbjct: 96  DLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTM 138

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LG GG  +VY       + +VA+K       +K    + F+ E+   SQ++H+N+V ++ 
Sbjct: 19  LGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMID 78

Query: 454 LCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           +  +     LV E++   TL  +I S 
Sbjct: 79  VDEEDDCYYLVMEYIEGPTLSEYIESH 105

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 397 LGEGGFGSVYRGVLSDDT-----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKI 451
           +  GG G +Y  +   D       V +K    +           E   ++++ H ++V+I
Sbjct: 88  IAHGGLGWIYLAL---DRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQI 144

Query: 452 L-----GLCLQTKVPLLVYEFVSNGTL 473
                        V  +V E+V   +L
Sbjct: 145 FNFVEHTDRHGDPVGYIVMEYVGGQSL 171

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 245 DQNS-NVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLG-CHDIDECKEKERYHCEGTC 302
            + + NV   G    C         +C C  G++       C D++EC E+   +C   C
Sbjct: 2   GEENCNVNNGGCAQKCQMIRGA--VQCTCHTGYRLTEDGRTCQDVNECAEE--GYCSQGC 57

Query: 303 KNTFGNYTCDCPIGMHGDG 321
            N+ G + C C  G     
Sbjct: 58  TNSEGAFQCWCEAGYELRP 76

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           ++D    LGEG +G V   V    +  VAVK       +   +  + E+ I   +NH+NV
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV 67

Query: 449 VKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           VK  G   +      L  E+ S G LF  I   
Sbjct: 68  VKFYGH-RREGNIQYLFLEYCSGGELFDRIEPD 99

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 16/89 (17%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPK-EADK-------IRVSQEFQHEMGI 439
           +N+ K   +GEG +G VY+         VA+KK + + +        IR       E+ +
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIR-------EISL 55

Query: 440 VSQINHKNVVKILGLCLQTKVPLLVYEFV 468
           + ++NH N+VK+L +        LV+EF+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFL 84

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 16/88 (18%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPK-EADK-------IRVSQEFQHEMGIV 440
            Y +   LGEG +G VY+ +    +  VA+K+ + E ++       IR       E+ ++
Sbjct: 35  RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIR-------EVSLL 87

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFV 468
            ++ H+N++++  +        L++E+ 
Sbjct: 88  KELQHRNIIELKSVIHHNHRLHLIFEYA 115

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEF----QHEMGIVSQIN- 444
           ++   + LG G  G++    + D+  VAVK        R+  E       E+ ++ + + 
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVK--------RILPECFSFADREVQLLRESDE 76

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           H NV++        +   +  E  +  TL  ++  K
Sbjct: 77  HPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQK 111

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
            +++    +G GGFG V+      DD   A+K+ +  ++    ++   E+  ++++ H  
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 448 VVK 450
           +V+
Sbjct: 66  IVR 68

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 267 GYRCLCKPGFQGNPYLGC-HDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
            Y C C  GF+G     C     +    +   C+  C     +  C C  G    
Sbjct: 62  EYTCTCLEGFEGK---NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 256 NTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPI 315
              C Y E  E +        +        D D+C+       +G CK+  G YTC C  
Sbjct: 14  EETCSYEEAREVF-EDSDKTNEFWN--KYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLE 69

Query: 316 GMHGD 320
           G  G 
Sbjct: 70  GFEGK 74

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 9/72 (12%), Positives = 12/72 (16%), Gaps = 11/72 (15%)

Query: 253 CGDNTNCDYSENGEGYRCLCKPGFQGNPYLGC-HDIDECKEKERYHCE--GTCKNTFGNY 309
              +  C   E      C C  G+                    Y C      +      
Sbjct: 89  GDCDQFC--HEEQNSVVCSCARGYTLAD---NGKACIPT---GPYPCGKQTLERRKRSVA 140

Query: 310 TCDCPIGMHGDG 321
                 G   D 
Sbjct: 141 QATSSSGEAPDS 152

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK---PKEADKIRVSQEFQHEMGIVSQIN 444
            +Y+    +G G    V          +VA+K+    K    +    E   E+  +SQ +
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSM---DELLKEIQAMSQCH 71

Query: 445 HKNVVKILG 453
           H N+V    
Sbjct: 72  HPNIVSYYT 80

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQINH 445
            Y   + LGEG +G V   +      + AVK   K K           + E+ ++ ++ H
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRH 65

Query: 446 KNVVKILG-LCLQTKVPL-LVYEFVSNGT--LFHHIHSK 480
           KNV++++  L  + K  + +V E+   G   +   +  K
Sbjct: 66  KNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEK 104

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           ++D    LGEG +G V   V    +  VAVK       +   +  + E+ I   +NH+NV
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV 67

Query: 449 VKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           VK  G   +      L  E+ S G LF  I   
Sbjct: 68  VKFYGH-RREGNIQYLFLEYCSGGELFDRIEPD 99

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK---PKEADKIRVSQEFQHEMGIVSQI 443
            K +     +G G FG+VY    + +   VA+KK     +    +  Q+   E+  + ++
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKW-QDIIKEVRFLQKL 111

Query: 444 NHKNVVKILG 453
            H N ++  G
Sbjct: 112 RHPNTIQYRG 121

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKI 451
           LGEG F    + V    +   AVK   K  EA+  +       E+  +     H N+VK+
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQK-------EITALKLCEGHPNIVKL 71

Query: 452 LGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
             +        LV E ++ G LF  I  K  
Sbjct: 72  HEVFHDQLHTFLVMELLNGGELFERIKKKKH 102

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 388 TKNYDKSNFLGEG--GFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQI 443
              Y+    +G+G     +V           V V++   EA    +    Q E+ +    
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF 83

Query: 444 NHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVLK 486
           NH N+V            L +V  F++ G+    I +     + 
Sbjct: 84  NHPNIVPYRA-TFIADNELWVVTSFMAYGSAKDLICTHFMDGMN 126

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQI- 443
           +++ + + LG G +G V++     D    AVK    P    K R       E+G   ++ 
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDR--ARKLAEVGSHEKVG 114

Query: 444 NHKNVVKILG-------LCLQTKVPLLVYEFVSNGTLFHHI 477
            H   V++         L LQT       E     +L  H 
Sbjct: 115 QHPCCVRLEQAWEEGGILYLQT-------ELCG-PSLQQHC 147

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--------KPKEADKIRVSQEFQHEMG 438
            +NY+    LG G    V R +      + AVK             +   + +    E+ 
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 75

Query: 439 IVSQIN-HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
           I+ +++ H N++++           LV++ +  G LF ++  K +
Sbjct: 76  ILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVT 120

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 19/101 (18%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVK----------------KPKEADKIRVSQEFQHEMGIV 440
           L +G F  +      D+   A+K                   +        +F++E+ I+
Sbjct: 39  LNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 441 SQINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           + I ++  +   G+ +     + ++YE++ N ++       
Sbjct: 98  TDIKNEYCLTCEGI-ITNYDEVYIIYEYMENDSILKFDEYF 137

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 17/108 (15%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEFQH-EMGIVSQINH 445
             +Y  +  +G G FG VY+  L D  + VA+K      K+   + F++ E+ I+ +++H
Sbjct: 53  EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK------KVLQDKRFKNRELQIMRKLDH 106

Query: 446 KNVVKILGLCLQT-----KVPL-LVYEFVSNGTLFHHI--HSKSSQVL 485
            N+V++      +     +V L LV ++V   T++     +S++ Q L
Sbjct: 107 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTL 153

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQI-N 444
              ++    +G G +G VY+G  +      A+K      D+    +E + E+ ++ +  +
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE---EEIKQEINMLKKYSH 79

Query: 445 HKNVVKILGLCLQTKVPL------LVYEFVSNGTLFHHIHSKSSQVLK 486
           H+N+    G  ++   P       LV EF   G++   I +     LK
Sbjct: 80  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLK 127

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQINH 445
           +Y   + LG G FG V  G       +VAVK   + K    + V  + + E+  +    H
Sbjct: 12  HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQK-IRSLDVVGKIKREIQNLKLFRH 70

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
            +++K+  + + T     +V E+VS G LF +I   
Sbjct: 71  PHIIKLYQV-ISTPTDFFMVMEYVSGGELFDYICKH 105

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEFQH-------EMGIVS 441
            Y+K   +GEG +G V++    D  Q VA+K      K   S++          E+ ++ 
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIK------KFLESEDDPVIKKIALREIRMLK 57

Query: 442 QINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           Q+ H N+V +L +  + +   LV+E+  + T+ H +    
Sbjct: 58  QLKHPNLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQ 96

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 15/92 (16%)

Query: 385 IKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPK-EADK------IRVSQEFQHE 436
           + ++  + +   LG G + +VY+G+  +    VA+K+ K ++++      IR       E
Sbjct: 1   MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIR-------E 53

Query: 437 MGIVSQINHKNVVKILGLCLQTKVPLLVYEFV 468
           + ++ ++ H+N+V++  +        LV+EF+
Sbjct: 54  ISLMKELKHENIVRLYDVIHTENKLTLVFEFM 85

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQI-NHK 446
                   LG G  G+V          VAVK+   +   I        E+ ++++  +H 
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDI-----ALMEIKLLTESDDHP 69

Query: 447 NVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSS 482
           NV++       T   L +  E   N  L   + SK+ 
Sbjct: 70  NVIRYYCSE-TTDRFLYIALELC-NLNLQDLVESKNV 104

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 10/50 (20%)

Query: 286 DIDECKE-------KERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
           D+DEC           +  C+  C N  G Y C C  G  +  D   SCQ
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH-SCQ 51

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVSQ 442
             Y     LG+GGFG+V+ G  L+D  QVA+K     +      +  S     E+ ++ +
Sbjct: 31  AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWK 90

Query: 443 IN----HKNVVKILGLCLQTKVPLLVYEFVSNGT-LFHHIHSK 480
           +     H  V+++L      +  +LV E       LF +I  K
Sbjct: 91  VGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK 133

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 368 GMILKHQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADK 426
           GM  K +       AEL      Y    F+  G +G+V  GV S+   VA+K+       
Sbjct: 1   GMQAKGEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSD 60

Query: 427 IRVSQEFQH---------EMGIVSQINHKNVVKIL 452
            R                E+ +++  +H N++ + 
Sbjct: 61  GRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLR 95

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQV-AVKKPKEADKIRVSQEFQHEMG---IVSQINHKNVVKIL 452
           LG+GGFG V    +    ++ A KK ++  +I+  +     +    I+ ++N + VV  L
Sbjct: 192 LGKGGFGEVCACQVRATGKMYACKKLEK-KRIKKRKGEAMALNEKQILEKVNSRFVVS-L 249

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVLK 486
               +TK  L LV   ++ G L  HI+        
Sbjct: 250 AYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFP 284

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 380 SEAELIKATKNYDKSNF-----LGEGGFGSVY--RGVLSDDTQV--AVKKPKEADKIRVS 430
           SE  + +  +      F     LG+GG+G V+  R V   +T    A+K  K+A  +R +
Sbjct: 3   SETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNA 62

Query: 431 QEFQHEMG---IVSQINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIH 478
           ++  H      I+ ++ H  +V  L    QT   L L+ E++S G LF  + 
Sbjct: 63  KDTAHTKAERNILEEVKHPFIVD-LIYAFQTGGKLYLILEYLSGGELFMQLE 113

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 26/117 (22%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPK-EADK------IRVSQEFQHEMGIV 440
           + Y K + LGEG + +VY+G        VA+K+ + E ++      IR       E+ ++
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIR-------EVSLL 54

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFV---------SNGTLFHHIHSKS--SQVLK 486
             + H N+V +  +    K   LV+E++           G + +  + K    Q+L+
Sbjct: 55  KDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLR 111

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQINH 445
           +Y   + LG G FG V  G       +VAVK   + K    + V  + + E+  +    H
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQK-IRSLDVVGKIRREIQNLKLFRH 75

Query: 446 KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
            +++K+  + + T   + +V E+VS G LF +I   
Sbjct: 76  PHIIKLYQV-ISTPSDIFMVMEYVSGGELFDYICKN 110

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 13/103 (12%)

Query: 388 TKNYD-KSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQIN 444
           T +Y      LG G  G V          + A+K         +         G      
Sbjct: 27  TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASG------ 80

Query: 445 HKNVVKILGLC----LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
             ++V IL +        +  L++ E +  G LF  I  +  Q
Sbjct: 81  GPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQ 123

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 24/96 (25%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPK-EADK-------IRVSQEFQHEMGIV 440
            Y+K   +G+G FG V++        +VA+KK   E +K       +R       E+ I+
Sbjct: 18  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-------EIKIL 70

Query: 441 SQINHKNVVKILGLCLQTKVPL--------LVYEFV 468
             + H+NVV ++ +C     P         LV++F 
Sbjct: 71  QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC 106

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 6/76 (7%), Positives = 21/76 (27%), Gaps = 3/76 (3%)

Query: 381 EAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEM 437
           ++ L +  +       L  G    V+    +      A+K       +     +      
Sbjct: 54  DSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEAT 113

Query: 438 GIVSQINHKNVVKILG 453
              +++  ++  +   
Sbjct: 114 FAAARLLGESPEEARD 129

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 267 GYRCLCKPGFQGNPYLGC-HDIDECKEKERYH--CEGTCKNTFGN-YTCDCPIGMHGD 320
            Y C C P F+G     C    D+       +  CE  C +  G   +C C  G    
Sbjct: 67  SYICFCLPAFEGR---NCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLL 121

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 256 NTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPI 315
              C + E  E ++   +       ++   D D+C         G+CK+   +Y C C  
Sbjct: 19  EEQCSFEEAREIFKD-AERTKLF--WISYSDGDQCASSP-CQNGGSCKDQLQSYICFCLP 74

Query: 316 GMHGD 320
              G 
Sbjct: 75  AFEGR 79

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQV-AVKKPKEADKIRVSQEFQHEMG---IVSQINHKNVVKIL 452
           LG GGFG V+   +    ++ A KK  +  +++  + +Q  M    I+++++ + +V  L
Sbjct: 193 LGRGGFGEVFACQMKATGKLYACKKLNK-KRLKKRKGYQGAMVEKKILAKVHSRFIVS-L 250

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQ 483
               +TK  L LV   ++ G + +HI++    
Sbjct: 251 AYAFETKTDLCLVMTIMNGGDIRYHIYNVDED 282

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQ-IN 444
           T  Y+    +G G +    R +  + + + AVK   K             E+ I+ +   
Sbjct: 21  TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPT------EEIEILLRYGQ 74

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSS 482
           H N++ +  +    K   +V E +  G L   I  +  
Sbjct: 75  HPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKF 112

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 16/88 (18%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ--VAVKKPKEADKIRVSQEFQH-------EMGIV 440
            Y+    +GEG +G V +   + DT   VA+K      K   S + +        E+ ++
Sbjct: 26  KYENLGLVGEGSYGMVMKCR-NKDTGRIVAIK------KFLESDDDKMVKKIAMREIKLL 78

Query: 441 SQINHKNVVKILGLCLQTKVPLLVYEFV 468
            Q+ H+N+V +L +C + K   LV+EFV
Sbjct: 79  KQLRHENLVNLLEVCKKKKRWYLVFEFV 106

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQIN 444
           K    +      G+G FG+V  G        VA+KK  + D    ++E Q  M  ++ ++
Sbjct: 20  KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ-DPRFRNRELQ-IMQDLAVLH 77

Query: 445 HKNVVKIL------GLCLQTKVPL-LVYEFVSNGTLFHHI--HSKSSQVL 485
           H N+V++       G   +  + L +V E+V + TL      + +     
Sbjct: 78  HPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAP 126

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 21/85 (24%), Gaps = 3/85 (3%)

Query: 239 EGKCPDDQNSNVYRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLG--CHDIDECKEKE-R 295
           +    D               +Y    +   C C  G   NP     C    E   +   
Sbjct: 87  DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXC 146

Query: 296 YHCEGTCKNTFGNYTCDCPIGMHGD 320
                 C N  G Y C C  G   D
Sbjct: 147 NTDNEVCXNVEGVYXCQCMEGFTFD 171

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 17/82 (20%), Gaps = 12/82 (14%)

Query: 253 CGDNTNCDYSENGEG-YRCLCKPGFQGNPYLGCHDIDECK--------EKERYHCEGTCK 303
              N            + C+C  G        C + +EC          +     E    
Sbjct: 12  ICXNGQL---VQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68

Query: 304 NTFGNYTCDCPIGMHGDGKVSC 325
                Y C C  G         
Sbjct: 69  AQVNMYXCGCIEGYTLXEDTCV 90

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 4/79 (5%)

Query: 247 NSNVYRCGDNTNC---DYSENGEGYRCLCKPGFQGNPY-LGCHDIDECKEKERYHCEGTC 302
            +    CG+   C           Y C C  G+                  E   C    
Sbjct: 50  ETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEY 109

Query: 303 KNTFGNYTCDCPIGMHGDG 321
            +   +  C C IG   + 
Sbjct: 110 LSEIQSAGCSCAIGXVPNP 128

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNV 448
              S  LG G  G V +        + A+K       ++   + + E+ +  +     ++
Sbjct: 64  KVTSQVLGLGINGKVLQIFNKRTQEKFALK------MLQDCPKARREVELHWRASQCPHI 117

Query: 449 VKILGLC----LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           V+I+ +        K  L+V E +  G LF  I  +  Q
Sbjct: 118 VRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQ 156

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 16/107 (14%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQI- 443
                   L EGGF  VY    +    + A+K     +E     + QE       + ++ 
Sbjct: 28  LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVC----FMKKLS 83

Query: 444 NHKNVVKILGLCLQTKVP-------LLVYEFVSNGTLFHHIHSKSSQ 483
            H N+V+        K          L+   +  G L   +    S+
Sbjct: 84  GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESR 130

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK----KPKEADKIRVSQEFQHEMGIVSQIN 444
            YD    +G G FG             VAVK         + +      Q E+     + 
Sbjct: 21  RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENV------QREIINHRSLR 74

Query: 445 HKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
           H N+V+     + T   L ++ E+ S G L+  I + 
Sbjct: 75  HPNIVR-FKEVILTPTHLAIIMEYASGGELYERICNA 110

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-------KPKEADKIRVSQEFQHEMGIV 440
           + Y   + LG G FG V+  V    + +V VK             +     +   E+ I+
Sbjct: 24  QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAIL 83

Query: 441 SQINHKNVVKILGLCLQTKVPL-LVYEFVSNGT-LFHHIHSK 480
           S++ H N++K+L +  + +    LV E   +G  LF  I   
Sbjct: 84  SRVEHANIIKVLDI-FENQGFFQLVMEKHGSGLDLFAFIDRH 124

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 25/98 (25%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGI--------- 439
            Y+    +G G +G+VY+         VA+K       +RV        G+         
Sbjct: 10  RYEPVAEIGVGAYGTVYKARDPHSGHFVALK------SVRVPNGGGGGGGLPISTVREVA 63

Query: 440 ----VSQINHKNVVKILGLCLQTKVPL-----LVYEFV 468
               +    H NVV+++ +C  ++        LV+E V
Sbjct: 64  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV 101

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 397 LGEGGFGSVYRGVLSDDT----QVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           LG GG   V+      D      VAVK  +   A        F+ E    + +NH  +V 
Sbjct: 20  LGFGGMSEVHLAR---DLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVA 76

Query: 451 IL--G--LCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           +   G        +P +V E+V   TL   +H++
Sbjct: 77  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE 110

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 397 LGEGGFGSVYRGVLSDDTQV-AVKKPKEADKIRVSQEFQH---EMGIVSQINHKNVVKIL 452
           LGEG F +V        ++  A+K  ++   I+ ++   +   E  ++S+++H   VK+ 
Sbjct: 38  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKV-PYVTRERDVMSRLDHPFFVKLY 96

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHI 477
               Q    L     +  NG L  +I
Sbjct: 97  F-TFQDDEKLYFGLSYAKNGELLKYI 121

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 381 EAELIKATKNYDKSNF-LGEGGFGSVYRGVLSDDT---QVAVKKPKEADKIRVSQEFQHE 436
            +E  +    ++     +G G +G VY+    D       A+K+ +      +S     E
Sbjct: 12  SSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG---ISMSACRE 68

Query: 437 MGIVSQINHKNVVKILGLCLQTKVPL--LVYEFV 468
           + ++ ++ H NV+ +  + L        L++++ 
Sbjct: 69  IALLRELKHPNVISLQKVFLSHADRKVWLLFDYA 102

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 273 KPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
           +       Y    DI+EC +     C   C N  G Y C CP    +H D K +C 
Sbjct: 103 ERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMK-NCG 157

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 253 CGDNTNCDYSENGEGYRCLCKPGFQGNPYLGC-HDIDECKEKERYHCEGTCKNTFGNYTC 311
           C  N +C   ++  GY C C PG++G     C    +EC  +    C+  C     +YTC
Sbjct: 13  CLHNGSC--QDSIWGYTCTCSPGYEG---SNCELAKNECHPERTDGCQHFCLPGQESYTC 67

Query: 312 DCPIG 316
            C  G
Sbjct: 68  SCAQG 72

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 29/103 (28%)

Query: 386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQ--VAVKKPKEADKIRVSQEFQHEMGI---- 439
           +A + Y+    +GEG +G V++     +    VA+K      ++RV      E G+    
Sbjct: 8   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALK------RVRVQTG---EEGMPLST 58

Query: 440 ---------VSQINHKNVVKILGLCLQTKVPL-----LVYEFV 468
                    +    H NVV++  +C  ++        LV+E V
Sbjct: 59  IREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 101

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNV 448
              S  LG G  G V +        + A+K       ++   + + E+ +  +     ++
Sbjct: 20  KVTSQVLGLGINGKVLQIFNKRTQEKFALK------MLQDCPKARREVELHWRASQCPHI 73

Query: 449 VKILGLC----LQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           V+I+ +        K  L+V E +  G LF  I  +  Q
Sbjct: 74  VRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQ 112

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 267 GYRCLCKPGFQGNPYLGC-HDIDECKEKERYHCEGTCKNTFGN-YTCDCPIGMHGD 320
            Y C C+ GF+G     C  D     +  R  C+  CK    +   C C  G    
Sbjct: 68  SYECWCQVGFEGKN---CELDATCNIKNGR--CKQFCKTGADSKVLCSCTTGYRLA 118

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 374 QRVRIFSEAELIKATKNYDKSNF-----LGEGGFGSVYRGVLSDDTQV-AVKKPKEADKI 427
            +   F + + ++   +   ++F     +G GGFG VY    +D  ++ A+K   +  +I
Sbjct: 169 DKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK-KRI 227

Query: 428 RVSQEFQHEMG------IVSQINHKNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIH 478
           ++ Q     +       +VS  +   +V  +     T   L  + + ++ G L +H+ 
Sbjct: 228 KMKQGETLALNERIMLSLVSTGDCPFIVC-MSYAFHTPDKLSFILDLMNGGDLHYHLS 284

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens} Length = 551

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 274 PGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTF-GNYTCDCPIGMHGDGKVSC 325
           PG   +P         C +     C     C     G+ +C C +G  G+G +  
Sbjct: 5   PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 373 HQRVRIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQ 431
            +    FS       T+   +   +GEG FG V++ +  D T VA+K    E   +    
Sbjct: 7   QKGPVPFSH---CLPTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGS 62

Query: 432 EFQHEMGIVSQINHKNVVKILGLCLQTKVP 461
             +    I+ +I     + +L   +  +  
Sbjct: 63  HQKTFEEILPEIIISKELSLLSGEVCNRTE 92

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 19/99 (19%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK--PKEADK----IRVSQEFQHEMGIV 440
             +Y     LG G +  V+  + ++++ +V VK   P +  K    I++ +  +      
Sbjct: 35  QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLR------ 88

Query: 441 SQINHKNVVKILGLCL--QTKVPLLVYEFVSNGTLFHHI 477
                 N++ +  +     ++ P LV+E V N T F  +
Sbjct: 89  ---GGPNIITLADIVKDPVSRTPALVFEHV-NNTDFKQL 123

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 18/75 (24%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQH---------EM 437
              Y+  + +G G +G V       +   VA+KK        + + F+          E+
Sbjct: 52  PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKK--------ILRVFEDLIDCKRILREI 103

Query: 438 GIVSQINHKNVVKIL 452
            I++++NH +VVK+L
Sbjct: 104 AILNRLNHDHVVKVL 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 46/390 (11%), Positives = 98/390 (25%), Gaps = 129/390 (33%)

Query: 207 AFLADETFNLLDFQ-LSDYDKSS-SNAKIEWVVKEGK----------CPDDQNSNVYR-- 252
           AF+ +      D + + D  KS  S  +I+ ++                  +   + +  
Sbjct: 28  AFVDN-----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 253 CGDNTNCDYSENGEGYRCLCK-PGFQGNPYLGCHD---------------IDECKEKERY 296
             +    +Y       +   + P      Y+   D                 +   K R 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR- 141

Query: 297 HCEGTCKNTFGNYTCDCPIGMHGDGK-----VSCQGFRITTIAAVIGAAIFTVTVG---- 347
             +   +            G+ G GK       C  +++      +   IF + +     
Sbjct: 142 --QALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQC---KMDFKIFWLNLKNCNS 194

Query: 348 ---ILAFIA--CR----------------------ERRKKRNFF-----NNGGMILKHQR 375
              +L  +                            + + R         N  ++L +  
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-- 252

Query: 376 VRIFSEAELIKA----------TKNYDKSNFLG------------EGGFGSVY-RGVLSD 412
           V+    A+   A          T+    ++FL                      + +L  
Sbjct: 253 VQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 413 DTQVAVKK-PKEADKI---RVSQ--EFQHEMGIVS----QINHKNVVKILGLCLQTKVPL 462
                 +  P+E       R+S   E   +          +N   +  I+   L    P 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 463 LVYEFVSNGTLFH---HIHSKSSQVLKT-W 488
              +     ++F    HI    + +L   W
Sbjct: 370 EYRKMFDRLSVFPPSAHI---PTILLSLIW 396

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 397 LGEGGFGSVYRGVLSDDTQV-AVKKPKEADKIRVSQEFQHEMG---IVSQINHKNVVKIL 452
           LG+G FG V         +  A+K  K+ + I    E  H +    ++    H  +   L
Sbjct: 156 LGKGTFGKVILVKEKATGRYYAMKILKK-EVIVAKDEVAHTLTENRVLQNSRHPFLTA-L 213

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIH 478
               QT   L  V E+ + G LF H+ 
Sbjct: 214 KYSFQTHDRLCFVMEYANGGELFFHLS 240

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 397 LGEGGFGSVYRGVLSDDTQV-AVKKPKEADKIRVSQEFQH---EMGIVSQINHKNVVKIL 452
           LG G FG V      +     A+K   +   +++ Q  +H   E  I+  +N   +VK+ 
Sbjct: 49  LGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQI-EHTLNEKRILQAVNFPFLVKLE 107

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHI 477
               +    L +V E+V+ G +F H+
Sbjct: 108 F-SFKDNSNLYMVMEYVAGGEMFSHL 132

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 397 LGEGGFGSVYRGVLSDDT----QVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVK 450
           +G GG G VY      DT     VA+K      +         Q E     ++   +VV 
Sbjct: 42  VGRGGMGDVYEAE---DTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVP 98

Query: 451 ILGLCLQTKVPLLVYEFVSNGTL 473
           I           +    ++   L
Sbjct: 99  IHDFGEIDGQLYVDMRLINGVDL 121

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 3/73 (4%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHKNVVKILG 453
           LG+    +              V      E       ++ + E+  +  +      K   
Sbjct: 86  LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAK 145

Query: 454 LCLQTKVPLLVYE 466
           + L+   P  + +
Sbjct: 146 VHLRFIFPFDLVK 158

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGVLSDD-TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK 446
           +K Y     LG G FG V      +   + A+KK  + D    ++E      I+  ++H 
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQ-DPRYKNRELD----IMKVLDHV 60

Query: 447 NVVKIL 452
           N++K++
Sbjct: 61  NIIKLV 66

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LGEG FG V          +VA+K   +     K  +    + E+  +  + H +++K+ 
Sbjct: 17  LGEGSFGKVKLATHYKTQQKVALKFISRQL-LKKSDMHMRVEREISYLKLLRHPHIIKLY 75

Query: 453 GLCLQTKVPL-LVYEFVSNGTLFHHIHSK 480
            + + T   + +V E+   G LF +I  K
Sbjct: 76  DV-ITTPTDIVMVIEYA-GGELFDYIVEK 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	491
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.68
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.67
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.67
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.58
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.58
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.55
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.54
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.53
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.53
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.52
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.51
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.49
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.45
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.44
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.43
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.37
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.36
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.35
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.34
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.33
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.32
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.31
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.29
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.28
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.27
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.27
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.27
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.27
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.26
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.26
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.26
3uqc_A	286	Probable conserved transmembrane protein; structur	99.24
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.24
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.23
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.22
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.22
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.22
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.22
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.22
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.22
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.21
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.21
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.21
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.21
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.21
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.2
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.2
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.2
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.19
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.18
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.18
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.18
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.18
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.18
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.17
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.17
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.17
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.17
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.17
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.17
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.16
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.16
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.16
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.15
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.15
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.15
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.15
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.15
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.15
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.15
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.14
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.14
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.14
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.14
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.14
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.14
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.14
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.14
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.13
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.13
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.13
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.13
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.13
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.13
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.13
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.13
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.12
3niz_A	311	Rhodanese family protein; structural genomics, str	99.12
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.11
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.11
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.11
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.11
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.1
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.1
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.1
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.1
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.1
3bhy_A	283	Death-associated protein kinase 3; death associate	99.09
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.09
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.09
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.08
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.08
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.08
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.07
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.07
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.07
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.06
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.06
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.06
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.06
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.06
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.06
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.05
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.05
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.05
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.05
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.03
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.03
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.03
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.03
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.03
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.03
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.03
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.02
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.02
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.02
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.02
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.01
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.01
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.01
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.01
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.01
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.01
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	98.99
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	98.99
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.99
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	98.99
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	98.99
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	98.99
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.99
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	98.99
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	98.99
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	98.99
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	98.98
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.98
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.98
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	98.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	98.96
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	98.96
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	98.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	98.96
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	98.96
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.95
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	98.95
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	98.95
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	98.94
3an0_A	340	Dual specificity mitogen-activated protein kinase;	98.93
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	98.92
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.92
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	98.91
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.91
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.91
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	98.91
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	98.9
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.9
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	98.9
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.9
3rp9_A	458	Mitogen-activated protein kinase; structural genom	98.89
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	98.88
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.88
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.88
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	98.88
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	98.87
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	98.85
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.85
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.85
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.85
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	98.84
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.84
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.83
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.83
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	98.82
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.82
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.81
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.8
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.8
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.8
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.79
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.79
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.79
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.79
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.79
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.78
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.77
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.77
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.76
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.76
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.76
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.75
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.74
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.72
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.71
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.69
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.69
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.69
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.68
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.64
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.62
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.61
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.6
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.6
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.59
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.55
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.54
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.54
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.4
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.39
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.35
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.34
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.27
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.11
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.02
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	97.88
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	97.88
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.86
2bou_A	143	EGF-like module containing mucin-like hormone rece	97.82
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.69
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.65
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.63
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.61
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.59
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.58
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	97.54
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	97.51
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	97.5
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.47
2vh0_B	134	Activated factor XA light chain; serine protease,	97.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.39
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	97.32
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.26
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	97.24
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.18
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	97.07
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	96.97
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.79
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.78
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	96.62
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	96.54
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	96.16
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.06
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	95.68
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	94.8
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	94.77
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	94.18
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	93.96
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	93.86
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	93.81
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	93.61
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	93.52
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	93.43
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	93.27
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	92.99
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	92.92
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	92.65
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	92.48
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	92.39
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	92.1
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	92.06
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	92.04
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	91.97
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	91.6
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	91.53
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	91.37
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	91.36
2wph_E	59	Coagulation factor IXA light chain; serine proteas	90.83
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	90.62
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	90.57
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	90.45
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	90.22
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	90.11
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	89.66
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	89.63
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	89.51
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	89.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.33
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	88.85
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	88.8
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	88.71
1nzi_A	159	Complement C1S component; calcium, innate immunity	88.57
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	87.76
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.6
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	87.49
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	87.37
1ob1_C	99	Major merozoite surface protein; immune system, im	87.35
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	87.26
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	86.98
1szb_A	170	Mannose binding lectin-associated serine protease-	86.76
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	86.55
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	86.15
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	86.03
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	85.76
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	85.73
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	84.83
1aut_L	114	Activated protein C; serine proteinase, plasma cal	84.8
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	83.94
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	83.93
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	83.87
2wph_E	59	Coagulation factor IXA light chain; serine proteas	83.19
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	83.11
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	82.88
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	82.53
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	82.47
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	82.15
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	81.86
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	80.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	80.23

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.68  E-value=4.5e-17  Score=158.16  Aligned_cols=91  Identities=29%  Similarity=0.573  Sum_probs=78.7

Q ss_pred             ccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...+.||+|+||+||+|++.      ++..||||+++.... ...++|.+|+++|++++|||||+++|++.+.+..+
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~   91 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD-NARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   91 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCCh-HHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            45677789999999999999864      367899999986554 45688999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      |||||+++|+|.++|+..
T Consensus        92 lV~Ey~~~G~L~~~l~~~  109 (299)
T 4asz_A           92 MVFEYMKHGDLNKFLRAH  109 (299)
T ss_dssp             EEEECCTTCBHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHhc
Confidence            999999999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.67  E-value=7.2e-17  Score=158.87  Aligned_cols=92  Identities=32%  Similarity=0.579  Sum_probs=81.0

Q ss_pred             ccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...++||+|+||+||+|+++      +++.||||+++.... ...++|.+|+++|++++|||||+++|++.+.+..+
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~  119 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL  119 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            45666788999999999999864      367899999986544 45688999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      |||||+++|+|.++|+..+
T Consensus       120 lV~Ey~~~G~L~~~l~~~~  138 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHG  138 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSS
T ss_pred             EEEEcCCCCcHHHHHHhcC
Confidence            9999999999999998753

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.67  E-value=1.1e-16  Score=156.23  Aligned_cols=92  Identities=29%  Similarity=0.491  Sum_probs=78.6

Q ss_pred             cccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      +++..+.||+|+||+||+|.+.      +++.||||+++........++|.+|+.++++++|||||+|+|++.+.+..+|
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            4455678999999999999863      4578999999765543456889999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++|+.++
T Consensus       107 V~Ey~~~G~L~~~L~~~~  124 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRS  124 (308)
T ss_dssp             EEECCSSCBHHHHHHTTC
T ss_pred             EEEcCCCCcHHHHHHhhC
Confidence            999999999999998653

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=145.36  Aligned_cols=97  Identities=25%  Similarity=0.415  Sum_probs=79.7

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .+++...+.||+|+||+||+|+++.  .||||.++... .....++|.+|+.+|++++|||||+++|++. .+.++||||
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmE  111 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ  111 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEE
Confidence            3566777899999999999998743  59999987543 3345688999999999999999999999875 456899999


Q ss_pred             ccCCCChhhhhccCCCCcccccc
Q 011189          467 FVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      |+++|+|.++|+....  .++|.
T Consensus       112 y~~gGsL~~~l~~~~~--~l~~~  132 (307)
T 3omv_A          112 WCEGSSLYKHLHVQET--KFQMF  132 (307)
T ss_dssp             CCSSCBHHHHHHTSCC--CCCHH
T ss_pred             cCCCCCHHHHHhhcCC--CCCHH
Confidence            9999999999986543  36664

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.58  E-value=2.8e-15  Score=147.95  Aligned_cols=93  Identities=20%  Similarity=0.377  Sum_probs=76.4

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|+||+||+++. .+++.||||.+.... .....+.|.+|+.+|++++|||||++++++.+.+..+||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5788889999999999999986 468999999986542 32456789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+.++
T Consensus       104 y~~gg~L~~~i~~~~  118 (350)
T 4b9d_A          104 YCEGGDLFKRINAQK  118 (350)
T ss_dssp             CCTTCBHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHcC
Confidence            999999999998654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.55  E-value=3.2e-15  Score=148.37  Aligned_cols=101  Identities=28%  Similarity=0.360  Sum_probs=84.6

Q ss_pred             HHHHHHhhccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCC-CccccEEe
Q 011189          381 EAELIKATKNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH-KNVVKILG  453 (491)
Q Consensus       381 ~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g  453 (491)
                      .++.+...++|+..+.||+|+||+||+|.+..      ++.||||.++........++|.+|+.+|.+++| ||||+++|
T Consensus        56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g  135 (353)
T 4ase_A           56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG  135 (353)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence            34455567889999999999999999998642      358999999876554566889999999999965 99999999


Q ss_pred             EEEeC-CccEEEEeccCCCChhhhhccCC
Q 011189          454 LCLQT-KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       454 ~~~~~-~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++.+. +..+||||||++|+|.++|+..+
T Consensus       136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~  164 (353)
T 4ase_A          136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKR  164 (353)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHHTG
T ss_pred             EEEecCCEEEEEEEcCCCCCHHHHHHhcc
Confidence            99775 56899999999999999998653

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.54  E-value=1e-14  Score=141.70  Aligned_cols=94  Identities=17%  Similarity=0.399  Sum_probs=78.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC--------
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK--------  459 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------  459 (491)
                      ++|+..+.||+|+||+||+++.. +++.||||+++........+.+.+|+.+|++++|||||++++++...+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            45888899999999999999864 688999999876555455678999999999999999999999987544        


Q ss_pred             ----ccEEEEeccCCCChhhhhccCCC
Q 011189          460 ----VPLLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       460 ----~~~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                          ..+|||||+++|+|.++|+.+..
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~  111 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCT  111 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCS
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCC
Confidence                36899999999999999987643

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.53  E-value=9.3e-15  Score=142.41  Aligned_cols=89  Identities=22%  Similarity=0.329  Sum_probs=71.8

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC----ccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK----VPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lv  464 (491)
                      +++...+.||+|+||+||+|++ .++.||||+++....  ....+.+|+..+.+++|||||+++|++.+.+    ..+||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~--~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE--RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch--hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence            3566778999999999999998 689999999875432  1222334555667889999999999998754    57899


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.++|+..
T Consensus        80 ~Ey~~~gsL~~~l~~~   95 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EECCTTCBHHHHHHHC
T ss_pred             ecCCCCCcHHHHHHhC
Confidence            9999999999999865

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.53  E-value=6e-15  Score=145.40  Aligned_cols=91  Identities=25%  Similarity=0.306  Sum_probs=80.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ..|+..+.||+|+||+||++... +++.||||++..... ...+.+.+|+.+|++++|||||++++++...+..+|||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~-~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC-SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch-hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            45888889999999999999964 689999999865433 3346688999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++|+..
T Consensus       153 ~~gg~L~~~l~~~  165 (346)
T 4fih_A          153 LEGGALTDIVTHT  165 (346)
T ss_dssp             CTTEEHHHHHHHS
T ss_pred             CCCCcHHHHHHcC
Confidence            9999999999764

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.52  E-value=7.6e-15  Score=142.52  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=81.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..++||+|+||+||+++. .+++.||+|.+....  .....+.+.+|+++|++++|||||++++++.+.+..+|||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5688899999999999999986 468899999987542  2234577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|+..
T Consensus       112 Ey~~gG~L~~~i~~~  126 (311)
T 4aw0_A          112 SYAKNGELLKYIRKI  126 (311)
T ss_dssp             CCCTTEEHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHc
Confidence            999999999999864

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=146.67  Aligned_cols=91  Identities=25%  Similarity=0.306  Sum_probs=80.6

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.|+..+.||+|+||+||++... +++.||||++..... ...+.+.+|+.+|++++|||||++++++...+..+|||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~-~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC-SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccch-hHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence            46888899999999999999964 689999999875543 3346689999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++|+..
T Consensus       230 ~~gG~L~~~i~~~  242 (423)
T 4fie_A          230 LEGGALTDIVTHT  242 (423)
T ss_dssp             CTTEEHHHHHHHS
T ss_pred             CCCCcHHHHHhcc
Confidence            9999999999754

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.49  E-value=3.9e-14  Score=136.59  Aligned_cols=89  Identities=24%  Similarity=0.359  Sum_probs=74.7

Q ss_pred             cccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCccEEEE
Q 011189          392 DKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVPLLVY  465 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~  465 (491)
                      ...++||+|+||+||+|... .++.||+|.+.... .....+.|.+|+.+|++++|||||++++++..    .+..+|||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            34567999999999999864 57899999986542 22456789999999999999999999999865    23578999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|++.
T Consensus       109 Ey~~gg~L~~~l~~~  123 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRF  123 (290)
T ss_dssp             ECCCSCBHHHHHHHH
T ss_pred             eCCCCCCHHHHHHhc
Confidence            999999999999864

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.45  E-value=9.1e-14  Score=132.89  Aligned_cols=92  Identities=23%  Similarity=0.389  Sum_probs=75.4

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..+.||+|+||+||++.. .+++.||+|.++...  .....+.+.+|+.+|++++|||||++++++...+..+|||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5788999999999999999985 468999999986542  2233567999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+ +|+|.++|.+++
T Consensus        93 Ey~-~g~L~~~l~~~~  107 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRD  107 (275)
T ss_dssp             ECC-CEEHHHHHHHSC
T ss_pred             eCC-CCCHHHHHHHcC
Confidence            999 689999998754

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.44  E-value=4.9e-14  Score=138.41  Aligned_cols=87  Identities=21%  Similarity=0.198  Sum_probs=76.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.|...++||+|+||+||+++.. .++.||||+++....      +.+|+.++++++|||||++++++.+.+..+|||||
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            45677788999999999999964 589999999975432      24799999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++|+..+
T Consensus       132 ~~gg~L~~~l~~~~  145 (336)
T 4g3f_A          132 LEGGSLGQLIKQMG  145 (336)
T ss_dssp             CTTCBHHHHHHHHS
T ss_pred             cCCCcHHHHHHHcC
Confidence            99999999998653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.43  E-value=2.2e-14  Score=139.06  Aligned_cols=93  Identities=25%  Similarity=0.368  Sum_probs=74.1

Q ss_pred             ccccccceeccCCcceEEEEEEc----CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|+..+.||+|+||+||+++..    .++.||+|.++... .......+.+|+.+|++++|||||++++++...+..+|
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            56888899999999999999852    46789999986542 11233568899999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++|++.+
T Consensus       104 vmEy~~gg~L~~~l~~~~  121 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEV  121 (304)
T ss_dssp             EECCCTTCEEHHHHHHHC
T ss_pred             EEEcCCCCCHHHHHHhcC
Confidence            999999999999998653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.37  E-value=9.2e-13  Score=139.31  Aligned_cols=92  Identities=24%  Similarity=0.399  Sum_probs=81.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||+||++..+ +++.||+|.+..... ...+.+.+|+.+|+.++|||||+|++++...+..+|||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~-~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE-SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch-hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            57888899999999999999864 689999999876543 4457799999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++|..+.
T Consensus       236 ~~gg~L~~~i~~~~  249 (573)
T 3uto_A          236 MSGGELFEKVADEH  249 (573)
T ss_dssp             CCCCBHHHHHTCTT
T ss_pred             cCCCcHHHHHHHhC
Confidence            99999999997653

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.36  E-value=5.2e-13  Score=131.13  Aligned_cols=112  Identities=37%  Similarity=0.660  Sum_probs=94.5

Q ss_pred             eeecHHHHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEE
Q 011189          377 RIFSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL  456 (491)
Q Consensus       377 ~~~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  456 (491)
                      ..++..++....++|...+.||+|+||.||++...+++.||+|.+...........|.+|+.++++++||||+++++++.
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   97 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM   97 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred             ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence            46888999999999999999999999999999987899999999876543233346899999999999999999999999


Q ss_pred             eCCccEEEEeccCCCChhhhhccCCC-Cccccc
Q 011189          457 QTKVPLLVYEFVSNGTLFHHIHSKSS-QVLKTW  488 (491)
Q Consensus       457 ~~~~~~lv~Ey~~~GsL~~~L~~~~~-~~~l~W  488 (491)
                      ..+..++||||+++|+|.++|+.... ...++|
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  130 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDW  130 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCH
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCH
Confidence            99999999999999999999987642 223554

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.35  E-value=2.5e-12  Score=125.03  Aligned_cols=113  Identities=34%  Similarity=0.600  Sum_probs=95.1

Q ss_pred             eeeecHHHHHHhhcccccc------ceeccCCcceEEEEEEcCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcCCCC
Q 011189          376 VRIFSEAELIKATKNYDKS------NFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQINHK  446 (491)
Q Consensus       376 ~~~~~~~el~~~t~~~~~~------~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l~H~  446 (491)
                      ...|++.++.+++++|...      +.||+|+||.||++.. +++.||+|.+....   .....+.|.+|+.++++++||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            3468999999999998877      8899999999999987 68899999986432   223467899999999999999


Q ss_pred             ccccEEeEEEeCCccEEEEeccCCCChhhhhccCCCCcccccc
Q 011189          447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       447 niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ||+++++++...+..++||||+++|+|.+++........++|.
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  133 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH  133 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHH
T ss_pred             CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHH
Confidence            9999999999999999999999999999999864333345553

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.34  E-value=7.2e-13  Score=129.92  Aligned_cols=102  Identities=31%  Similarity=0.617  Sum_probs=88.9

Q ss_pred             ecHHHHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       379 ~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      ++..++...+++|...+.||+|+||+||++..++++.||+|++..... ...+.|.+|+.++++++||||+++++++...
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS-QGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS-SHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh-HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            344455567789999999999999999999988899999999876543 4567899999999999999999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++||||+++|+|.++|+...
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~  130 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSD  130 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSC
T ss_pred             CeEEEEEEcCCCCcHHHHHhccC
Confidence            99999999999999999998653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=131.09  Aligned_cols=92  Identities=25%  Similarity=0.379  Sum_probs=77.4

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------Cc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------KV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~  460 (491)
                      ++|...+.||+|+||+||++.. .+++.||||+++... .....+.+.+|+.+|++++|||||++++++...      +.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            4688889999999999999986 468999999987543 224457799999999999999999999987643      56


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||++ |+|.++|+.++
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~  153 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ  153 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS
T ss_pred             EEEEEeCCC-CCHHHHHHhcC
Confidence            899999996 78999998653

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.32  E-value=5.9e-12  Score=123.51  Aligned_cols=95  Identities=18%  Similarity=0.387  Sum_probs=80.8

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV------  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  460 (491)
                      .++|...+.||+|+||.||++... +++.||||+++........+.+.+|+.++++++||||+++++++.+.+.      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            356888899999999999999975 7899999998765544566889999999999999999999999876542      


Q ss_pred             ---------------------------------------------------cEEEEeccCCCChhhhhccCCC
Q 011189          461 ---------------------------------------------------PLLVYEFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       461 ---------------------------------------------------~~lv~Ey~~~GsL~~~L~~~~~  482 (491)
                                                                         .++||||+++|+|.++++....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~  157 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS  157 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC
Confidence                                                               7899999999999999997654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.31  E-value=2e-12  Score=129.68  Aligned_cols=93  Identities=27%  Similarity=0.492  Sum_probs=81.6

Q ss_pred             ccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||.||+|...    .+..||||.++........++|.+|+.++++++||||+++++++...+..+||
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            47888899999999999999864    46789999997664445667899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus       125 ~e~~~~~sL~~~l~~~~  141 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHD  141 (373)
T ss_dssp             EECCTTCBHHHHHHTTT
T ss_pred             EeCCCCCcHHHHHHhCC
Confidence            99999999999998654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.29  E-value=9.1e-12  Score=122.21  Aligned_cols=102  Identities=23%  Similarity=0.257  Sum_probs=87.2

Q ss_pred             eecHHHHHHhhcc----------ccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCC
Q 011189          378 IFSEAELIKATKN----------YDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK  446 (491)
Q Consensus       378 ~~~~~el~~~t~~----------~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~  446 (491)
                      .++.++++.+++.          |...+.||+|+||+||++... +++.||||.+..... ...+.+.+|+.++++++||
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ-QRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-CSHHHHHHHHHHHTTCCCT
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch-hHHHHHHHHHHHHHhCCCC
Confidence            5777888777653          555678999999999999975 689999999875543 3457799999999999999


Q ss_pred             ccccEEeEEEeCCccEEEEeccCCCChhhhhccC
Q 011189          447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       447 niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ||+++++++...+..++||||+++|+|.++++..
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  136 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV  136 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC
T ss_pred             CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc
Confidence            9999999999999999999999999999998753

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.28  E-value=5.6e-12  Score=125.66  Aligned_cols=91  Identities=14%  Similarity=0.285  Sum_probs=78.5

Q ss_pred             HhhccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      ...+.|+..+.||+|+||+||+++.+    .++.||+|.+.....   ...+.+|+.+|..+ +|||||++++++...+.
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~---~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~   94 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH---PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH   94 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC---HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC---HHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence            34577999999999999999999753    357899999866543   35678999999998 69999999999999999


Q ss_pred             cEEEEeccCCCChhhhhcc
Q 011189          461 PLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .+|||||+++|+|.++++.
T Consensus        95 ~~lvmE~~~g~~L~~~~~~  113 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILNS  113 (361)
T ss_dssp             EEEEEECCCCCCHHHHHTT
T ss_pred             EEEEEeCCCcccHHHHHcC
Confidence            9999999999999999863

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.27  E-value=9.1e-12  Score=124.77  Aligned_cols=94  Identities=28%  Similarity=0.442  Sum_probs=82.2

Q ss_pred             hccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||+||++...        .+..||+|.++........+++.+|+.++.++ +||||+++++++...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            357778899999999999999852        34579999998765545678899999999999 899999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++||||+++|+|.++|+..+
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~  182 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARR  182 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTC
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhC
Confidence            99999999999999999998754

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=120.87  Aligned_cols=92  Identities=23%  Similarity=0.380  Sum_probs=81.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||+||++... +++.||+|.+..... ...+.|.+|+.++.+++||||+++++++...+..++||||
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDE-ETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCH-HHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            46777899999999999999974 588999998866543 4568899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++|+...
T Consensus        89 ~~~~~L~~~l~~~~  102 (310)
T 3s95_A           89 IKGGTLRGIIKSMD  102 (310)
T ss_dssp             CTTCBHHHHHHHCC
T ss_pred             cCCCcHHHHHHhcc
Confidence            99999999998753

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.27  E-value=9.5e-12  Score=122.29  Aligned_cols=93  Identities=26%  Similarity=0.482  Sum_probs=81.0

Q ss_pred             ccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||+||++...    .+..||||.++........+.|.+|+.++.+++||||+++++++...+..+||
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            46777789999999999999974    34569999998764445668899999999999999999999999888899999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus       129 ~e~~~~~~L~~~l~~~~  145 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHD  145 (325)
T ss_dssp             EECCTTCBHHHHHHTTT
T ss_pred             eeCCCCCcHHHHHHhcc
Confidence            99999999999997653

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.27  E-value=6.9e-12  Score=122.39  Aligned_cols=95  Identities=28%  Similarity=0.450  Sum_probs=83.1

Q ss_pred             HhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ....+|...+.||+|+||+||++.. .++.||+|.+.... .....++|.+|+.++++++||||+++++++...+..++|
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV  112 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence            3456788889999999999999987 68899999987553 224457899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus       113 ~e~~~~~~L~~~l~~~~  129 (309)
T 3p86_A          113 TEYLSRGSLYRLLHKSG  129 (309)
T ss_dssp             EECCTTCBHHHHHHSTT
T ss_pred             EecCCCCcHHHHHhhcC
Confidence            99999999999998754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.26  E-value=5.5e-12  Score=126.71  Aligned_cols=93  Identities=30%  Similarity=0.557  Sum_probs=82.2

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||.||+|... +++.||+|.++........++|.+|+.++++++||||+++++++...+..+||||
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence            456777889999999999999985 6889999998765443455779999999999999999999999999899999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus       193 ~~~~g~L~~~l~~~  206 (377)
T 3cbl_A          193 LVQGGDFLTFLRTE  206 (377)
T ss_dssp             CCTTCBHHHHHHHH
T ss_pred             cCCCCCHHHHHHhc
Confidence            99999999999864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.26  E-value=1.3e-11  Score=117.58  Aligned_cols=91  Identities=25%  Similarity=0.489  Sum_probs=81.4

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|...+.||+|+||.||++...+++.||+|.+.....  ..+++.+|+.++++++||||+++++++...+..++||||+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   87 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB--CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc--CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence            56777889999999999999988888999999876543  3467999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.++++...
T Consensus        88 ~~~~L~~~l~~~~  100 (269)
T 4hcu_A           88 EHGCLSDYLRTQR  100 (269)
T ss_dssp             TTCBHHHHHHTTT
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999998654

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=121.44  Aligned_cols=100  Identities=24%  Similarity=0.358  Sum_probs=83.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC--ccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK--VPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  465 (491)
                      ++|...+.||+|+||+||++... +++.||+|.+.........+.+.+|+.++++++||||+++++++....  ..+|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            46778899999999999999975 488999999876544345678899999999999999999999998765  678999


Q ss_pred             eccCCCChhhhhccCCCCccccc
Q 011189          466 EFVSNGTLFHHIHSKSSQVLKTW  488 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~~~~~l~W  488 (491)
                      ||+++|+|.++|+.......++|
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~  111 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPE  111 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCH
T ss_pred             eCCCCCCHHHHHHHhccccCCCH
Confidence            99999999999987543322443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.24  E-value=1.9e-11  Score=117.91  Aligned_cols=92  Identities=21%  Similarity=0.173  Sum_probs=80.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... .++.||+|.+....  .....+.|.+|+.++.+++||||+++++++...+..+|||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            56888899999999999999975 48899999987653  2244578999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++++|.++|+..
T Consensus       111 e~~~g~~L~~~l~~~  125 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS  125 (286)
T ss_dssp             ECCCEEEHHHHHTTC
T ss_pred             EecCCCCHHHHHhcC
Confidence            999999999999653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.24  E-value=7.7e-12  Score=130.27  Aligned_cols=92  Identities=30%  Similarity=0.545  Sum_probs=81.5

Q ss_pred             hccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..+|...+.||+|+||.||+|.+.. +..||||.++....  ..++|.+|+.+|++++|||||++++++...+..+||||
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E  296 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE  296 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc--chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence            4567778899999999999999864 78999999976543  45789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+...
T Consensus       297 ~~~~g~L~~~l~~~~  311 (495)
T 1opk_A          297 FMTYGNLLDYLRECN  311 (495)
T ss_dssp             CCTTCBHHHHHHHSC
T ss_pred             ccCCCCHHHHHHhcC
Confidence            999999999998643

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.23  E-value=2.1e-11  Score=120.36  Aligned_cols=95  Identities=31%  Similarity=0.509  Sum_probs=83.8

Q ss_pred             HhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK  459 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  459 (491)
                      ...++|...+.||+|+||.||++...      .++.||+|.++........+.|.+|+.++.+++||||+++++++...+
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  123 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK  123 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence            34578888999999999999999974      247899999987654455678999999999999999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+|||||+++|+|.++|+..
T Consensus       124 ~~~lv~e~~~~~~L~~~l~~~  144 (343)
T 1luf_A          124 PMCLLFEYMAYGDLNEFLRSM  144 (343)
T ss_dssp             SCEEEEECCTTCBHHHHHHHT
T ss_pred             ceEEEEecCCCCcHHHHHHHh
Confidence            999999999999999999874

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.22  E-value=2e-11  Score=120.14  Aligned_cols=93  Identities=25%  Similarity=0.375  Sum_probs=81.7

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..+|...+.||+|+||.||++.. .+++.||+|.+.... .....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            45788889999999999999996 578999999986542 3245677999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|..+
T Consensus        94 e~~~~~~L~~~l~~~  108 (328)
T 3fe3_A           94 EYASGGEVFDYLVAH  108 (328)
T ss_dssp             CCCTTCBHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHc
Confidence            999999999999764

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.22  E-value=2.1e-11  Score=118.13  Aligned_cols=92  Identities=20%  Similarity=0.350  Sum_probs=81.1

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++.. .+++.||+|.+..... ...+.+.+|+.++++++||||+++++++...+..++|||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccc-cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            35788889999999999999984 5688999999865443 345778999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++++..
T Consensus        98 ~~~~~~L~~~~~~~  111 (297)
T 3fxz_A           98 YLAGGSLTDVVTET  111 (297)
T ss_dssp             CCTTCBHHHHHHHS
T ss_pred             CCCCCCHHHHHhhc
Confidence            99999999999764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.22  E-value=2e-11  Score=125.78  Aligned_cols=91  Identities=24%  Similarity=0.447  Sum_probs=80.4

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..++|...+.||+|+||+||+|.++.+..||||.++....  ..++|.+|+.+|++++|||||++++++. .+..+||||
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e  262 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM--SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITE  262 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB--CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc--cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEe
Confidence            4567778899999999999999998888999999976543  4678999999999999999999999975 667899999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus       263 ~~~~g~L~~~l~~~  276 (454)
T 1qcf_A          263 FMAKGSLLDFLKSD  276 (454)
T ss_dssp             CCTTCBHHHHHHSH
T ss_pred             ecCCCcHHHHHHhc
Confidence            99999999999854

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.22  E-value=8.5e-12  Score=124.10  Aligned_cols=103  Identities=27%  Similarity=0.374  Sum_probs=86.7

Q ss_pred             ecHHHHHHhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccE
Q 011189          379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKI  451 (491)
Q Consensus       379 ~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l  451 (491)
                      +...+.+...++|...+.||+|+||.||++.+.      +++.||||.++........+.|.+|+.++.++ +||||+++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            444555667788999999999999999999742      34789999998765445567899999999999 79999999


Q ss_pred             EeEEEeCC-ccEEEEeccCCCChhhhhccCC
Q 011189          452 LGLCLQTK-VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       452 ~g~~~~~~-~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++++...+ ..++||||+++|+|.++|+...
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~  122 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  122 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTT
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhcc
Confidence            99998765 4899999999999999999764

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.22  E-value=1.4e-11  Score=117.24  Aligned_cols=92  Identities=26%  Similarity=0.465  Sum_probs=80.3

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++.. .++.+|+|.+.... .....+.|.+|+.++++++||||+++++++...  +..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            5677789999999999999998 58899999987653 224557899999999999999999999999876  6789999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++|+...
T Consensus        89 e~~~~~~L~~~l~~~~  104 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGT  104 (271)
T ss_dssp             ECCTTCBHHHHHHSCS
T ss_pred             cccCCCcHHHHHhhcc
Confidence            9999999999998764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.21  E-value=1.4e-11  Score=130.51  Aligned_cols=92  Identities=16%  Similarity=0.249  Sum_probs=75.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...++||+|+||+||+++.. +++.||+|.+....     .........+++.+++.++|||||+|++++...+..+
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            67888999999999999999964 68999999986432     1111222334567778889999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      |||||+++|+|.++|+..
T Consensus       269 lVmEy~~GGdL~~~l~~~  286 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQH  286 (689)
T ss_dssp             EEECCCCSCBHHHHHHHH
T ss_pred             EEEecCCCCcHHHHHHhc
Confidence            999999999999999864

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.21  E-value=1.5e-12  Score=133.14  Aligned_cols=101  Identities=16%  Similarity=0.215  Sum_probs=84.8

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEEEcC-CcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEE
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCL  456 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  456 (491)
                      ...++....++|...++||+|+||+||+++... ++.||+|.++....  ....+.+.+|+.++..++||||+++++++.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            344555567889999999999999999999764 68899999865321  112344889999999999999999999999


Q ss_pred             eCCccEEEEeccCCCChhhhhccC
Q 011189          457 QTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       457 ~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+..+|||||+++|+|.++|+..
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~  168 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKF  168 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTT
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHc
Confidence            999999999999999999999874

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.21  E-value=1.7e-11  Score=120.33  Aligned_cols=94  Identities=30%  Similarity=0.475  Sum_probs=78.8

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++... +++.||+|.+.........+.+.+|+.+++.++||||+++++++...+..+||||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            357888899999999999999865 6889999998655433345678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++++...
T Consensus        86 ~~~~~~L~~~l~~~~  100 (323)
T 3tki_A           86 YCSGGELFDRIEPDI  100 (323)
T ss_dssp             CCTTEEGGGGSBTTT
T ss_pred             cCCCCcHHHHHhhcC
Confidence            999999999998653

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.21  E-value=3.2e-11  Score=117.41  Aligned_cols=95  Identities=32%  Similarity=0.466  Sum_probs=82.9

Q ss_pred             hhccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ..++|...+.||+|+||.||++..      .+++.||+|.+.........+.+.+|+.++++++||||+++++++...+.
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            346788889999999999999985      23478999999866554566889999999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++||||+++|+|.++|+...
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~  121 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESR  121 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTT
T ss_pred             eEEEEeecCCCCHHHHHHHHh
Confidence            999999999999999998753

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.21  E-value=2.4e-11  Score=121.60  Aligned_cols=93  Identities=33%  Similarity=0.491  Sum_probs=81.2

Q ss_pred             hccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .++|...+.||+|+||+||++.+.      .++.||||.++..........+.+|+.++.+++||||+++++++...+..
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            356778899999999999999853      35689999997654445567899999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|||||+++|+|.++|+..
T Consensus       150 ~lv~e~~~~g~L~~~l~~~  168 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRET  168 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHhh
Confidence            9999999999999999864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=123.19  Aligned_cols=94  Identities=26%  Similarity=0.423  Sum_probs=81.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC--ccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK--VPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  465 (491)
                      ++|...+.||+|+||+||++... +++.||+|.+.........+.+.+|++++++++||||+++++++...+  ..+|||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            46778899999999999999975 488999999876544345678899999999999999999999998765  679999


Q ss_pred             eccCCCChhhhhccCCC
Q 011189          466 EFVSNGTLFHHIHSKSS  482 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~~  482 (491)
                      ||+++|+|.++|+....
T Consensus        89 e~~~~g~L~~~l~~~~~  105 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSN  105 (396)
T ss_dssp             CCCTTEEHHHHTTSGGG
T ss_pred             ecCCCCCHHHHHHhhhc
Confidence            99999999999987543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.20  E-value=3e-11  Score=115.86  Aligned_cols=91  Identities=26%  Similarity=0.487  Sum_probs=78.4

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|...+.||+|+||.||++...++..||+|.+.....  ..+++.+|+.++.+++||||+++++++...+..++||||
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  100 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY  100 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB--CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC--CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence            457788899999999999999998888999999976543  346799999999999999999999999998999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++..
T Consensus       101 ~~~~~L~~~l~~~  113 (283)
T 3gen_A          101 MANGCLLNYLREM  113 (283)
T ss_dssp             CTTCBHHHHHHCG
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999863

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.20  E-value=2.8e-11  Score=115.10  Aligned_cols=91  Identities=31%  Similarity=0.458  Sum_probs=81.1

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|...+.||+|+||.||++..+++..||+|.++....  ..+++.+|+.++.+++||||+++++++...+..++||||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM--SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY   84 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC--cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence            456778899999999999999998888999999876543  346799999999999999999999999988899999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++..
T Consensus        85 ~~~~~L~~~l~~~   97 (268)
T 3sxs_A           85 ISNGCLLNYLRSH   97 (268)
T ss_dssp             CTTCBHHHHHHHH
T ss_pred             cCCCcHHHHHHHc
Confidence            9999999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.19  E-value=3.4e-11  Score=123.95  Aligned_cols=91  Identities=23%  Similarity=0.462  Sum_probs=79.3

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..++|...+.||+|+||.||+|.+..+..||||.++....  ..++|.+|+.+|++++||||+++++++.. +..+||||
T Consensus       182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e  258 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  258 (452)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence            3456777889999999999999998888899999976543  34789999999999999999999999865 67899999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus       259 ~~~~gsL~~~l~~~  272 (452)
T 1fmk_A          259 YMSKGSLLDFLKGE  272 (452)
T ss_dssp             CCTTCBHHHHHSHH
T ss_pred             hhcCCCHHHHHHhc
Confidence            99999999999853

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.18  E-value=4.7e-11  Score=117.61  Aligned_cols=94  Identities=28%  Similarity=0.451  Sum_probs=81.9

Q ss_pred             hccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||+||++...        ++..||+|.++........+.+.+|+.++.++ +||||+++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            467888899999999999999863        45789999998765545668899999999999 899999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++||||+++|+|.++|+...
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~  136 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARR  136 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTS
T ss_pred             CceEEEEECCCCCcHHHHHHHhc
Confidence            99999999999999999998754

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.18  E-value=1.4e-11  Score=120.52  Aligned_cols=99  Identities=33%  Similarity=0.514  Sum_probs=85.1

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEE
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC  455 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~  455 (491)
                      ++++...++|...+.||+|+||.||++...      .++.||+|.+...........|.+|+.++++++||||+++++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   97 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV   97 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence            344455678888999999999999999854      36789999997665445567899999999999999999999999


Q ss_pred             EeCCccEEEEeccCCCChhhhhccC
Q 011189          456 LQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       456 ~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ...+..++||||+++|+|.++|+..
T Consensus        98 ~~~~~~~lv~e~~~~~~L~~~l~~~  122 (322)
T 1p4o_A           98 SQGQPTLVIMELMTRGDLKSYLRSL  122 (322)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHH
T ss_pred             ccCCccEEEEEeCCCCcHHHHHHHh
Confidence            9989999999999999999999853

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.18  E-value=2.8e-11  Score=119.64  Aligned_cols=97  Identities=18%  Similarity=0.362  Sum_probs=83.1

Q ss_pred             HHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe
Q 011189          383 ELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ  457 (491)
Q Consensus       383 el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  457 (491)
                      ++....++|...+.||+|+||.||++.. .+++.||+|.+....    .....+.+.+|+.++++++||||+++++++..
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            3455677899999999999999999986 457899999886432    22345789999999999999999999999999


Q ss_pred             CCccEEEEeccCCCChhhhhcc
Q 011189          458 TKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       458 ~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .+..+|||||+++|+|.++|+.
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~  121 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLNV  121 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEEE
T ss_pred             CCeEEEEEeCCCCCcHHHHHHH
Confidence            9999999999999999999963

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.18  E-value=3.3e-11  Score=117.30  Aligned_cols=95  Identities=26%  Similarity=0.456  Sum_probs=83.1

Q ss_pred             hhccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  459 (491)
                      ..++|...+.||+|+||.||++..      ..++.||+|.++........+.+.+|+.++.++ +||||+++++++...+
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            346788889999999999999985      245789999998765545568899999999999 9999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccCC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..++||||+++|+|.++|+...
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~  122 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKR  122 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTT
T ss_pred             CcEEEEecCCCCCHHHHHHhcc
Confidence            9999999999999999998764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.18  E-value=3.9e-11  Score=120.63  Aligned_cols=94  Identities=29%  Similarity=0.421  Sum_probs=82.0

Q ss_pred             hccccccceeccCCcceEEEEEEc--------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS--------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||+||++...        .+..||+|+++........+.+.+|++++.++ +||||+++++++...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            467788899999999999999852        23579999998765545668899999999999 999999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++||||+++|+|.++|+...
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~  170 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARR  170 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTC
T ss_pred             CceEEEEEecCCCcHHHHHHHhc
Confidence            99999999999999999998754

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.17  E-value=1.5e-11  Score=120.99  Aligned_cols=96  Identities=27%  Similarity=0.433  Sum_probs=82.7

Q ss_pred             HHhhccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ  457 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  457 (491)
                      +...++|...+.||+|+||.||++....      ...||+|.+.........+.+.+|+.++.++ +||||+++++++..
T Consensus        42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  121 (333)
T 2i1m_A           42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH  121 (333)
T ss_dssp             BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence            3445678888999999999999998642      2479999997765445668899999999999 89999999999999


Q ss_pred             CCccEEEEeccCCCChhhhhccC
Q 011189          458 TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       458 ~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .+..++||||+++|+|.++|+..
T Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (333)
T 2i1m_A          122 GGPVLVITEYCCYGDLLNFLRRK  144 (333)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHH
T ss_pred             CCceEEEEecCCCCcHHHHHHHh
Confidence            99999999999999999999854

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.17  E-value=3.3e-11  Score=115.97  Aligned_cols=92  Identities=27%  Similarity=0.472  Sum_probs=79.8

Q ss_pred             ccccccceeccCCcceEEEEEEcC-C-------cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-D-------TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~-------~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ++|...+.||+|+||+||++.... +       ..||+|.+..... ...+.|.+|+.++++++||||+++++++...+.
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR-NYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG-GGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccH-HHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            567778899999999999998542 2       4799999876543 456789999999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++||||+++|+|.++|+...
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~  107 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNK  107 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTG
T ss_pred             CEEEEECCCCCCHHHHHHhCC
Confidence            999999999999999998754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.17  E-value=5e-11  Score=113.20  Aligned_cols=91  Identities=25%  Similarity=0.464  Sum_probs=81.3

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|...+.||+|+||.||++...+++.||+|.+.....  ..+.+.+|+.++.+++||||+++++++...+..++||||+
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM   85 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB--CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence            56777889999999999999988888999999876543  3467999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.++++...
T Consensus        86 ~~~~L~~~~~~~~   98 (267)
T 3t9t_A           86 EHGCLSDYLRTQR   98 (267)
T ss_dssp             TTCBHHHHHHHTT
T ss_pred             CCCcHHHHHhhCc
Confidence            9999999998753

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.17  E-value=3.9e-11  Score=115.93  Aligned_cols=93  Identities=27%  Similarity=0.469  Sum_probs=79.5

Q ss_pred             hccccccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--Cc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~  460 (491)
                      .++|+..+.||+|+||+||++++     ..++.||+|++..... ...+.|.+|+.++.+++||||+++++++...  ..
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE-EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            35677889999999999999985     2578999999876544 4567899999999999999999999998653  46


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++||||+++|+|.++|+...
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~~  108 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKHK  108 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHCG
T ss_pred             eEEEEEeCCCCCHHHHHHhcc
Confidence            899999999999999998754

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.17  E-value=4.9e-11  Score=116.98  Aligned_cols=90  Identities=22%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc----cEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV----PLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~l  463 (491)
                      .++|...+.||+|+||+||+++. .++.||||++.....  ....+.+|+.++.+++||||+++++++.....    .++
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l   99 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDK--QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL   99 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecCch--HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence            45788889999999999999987 488999999876543  34556779999999999999999999987543    689


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+.+
T Consensus       100 v~e~~~~g~L~~~l~~~  116 (322)
T 3soc_A          100 ITAFHEKGSLSDFLKAN  116 (322)
T ss_dssp             EEECCTTCBHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHhc
Confidence            99999999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.17  E-value=5.2e-11  Score=122.49  Aligned_cols=90  Identities=30%  Similarity=0.507  Sum_probs=79.1

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC-ccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK-VPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~E  466 (491)
                      .++|...+.||+|+||.||++.+ .++.||||.++...   ..+.|.+|+.+|++++||||+++++++...+ ..+||||
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e  267 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE  267 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT---TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred             hHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch---HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence            45677788999999999999998 47899999997653   3477999999999999999999999988765 7899999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+.+.
T Consensus       268 ~~~~g~L~~~l~~~~  282 (450)
T 1k9a_A          268 YMAKGSLVDYLRSRG  282 (450)
T ss_dssp             CCTTCBHHHHHHHHC
T ss_pred             ecCCCcHHHHHHhcC
Confidence            999999999998653

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.16  E-value=6.8e-11  Score=115.98  Aligned_cols=92  Identities=22%  Similarity=0.334  Sum_probs=80.8

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++... +++.+|+|.+.....  ..+.+.+|+.++..++||||+++++++...+..++|||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~--~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT--DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH--HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcc--cHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence            457888899999999999999865 578899999875432  45678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|....
T Consensus        82 ~~~g~~L~~~l~~~~   96 (321)
T 1tki_A           82 FISGLDIFERINTSA   96 (321)
T ss_dssp             CCCCCBHHHHHTSSS
T ss_pred             eCCCCCHHHHHHhcC
Confidence            999999999998653

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.16  E-value=5.5e-11  Score=118.61  Aligned_cols=93  Identities=26%  Similarity=0.364  Sum_probs=80.7

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-----hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-----RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .+.|...+.||+|+||.||++... +++.+|+|.++.....     ...+.+.+|+.++.+++||||+++++++...+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            456888899999999999999865 5889999998654321     1357799999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|||||+++|+|.++|...
T Consensus        91 ~lv~e~~~gg~L~~~l~~~  109 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQK  109 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTC
T ss_pred             EEEEEcCCCCcHHHHHHhc
Confidence            9999999999999999765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.16  E-value=4.1e-11  Score=126.02  Aligned_cols=91  Identities=23%  Similarity=0.462  Sum_probs=79.6

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..++|...+.||+|+||.||++.+..+..||||.++....  ..++|.+|+.+|++++|+||+++++++.. +..+||||
T Consensus       265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e  341 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  341 (535)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence            4566778889999999999999998888899999976543  34789999999999999999999999865 67899999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++|+..
T Consensus       342 ~~~~gsL~~~l~~~  355 (535)
T 2h8h_A          342 YMSKGSLLDFLKGE  355 (535)
T ss_dssp             CCTTEEHHHHHSHH
T ss_pred             hhcCCcHHHHHhhc
Confidence            99999999999853

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.16  E-value=4.5e-11  Score=114.99  Aligned_cols=91  Identities=20%  Similarity=0.281  Sum_probs=80.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++... ++..+|+|.+.........+.+.+|+.++++++||||+++++++...+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            56788899999999999999864 57899999987654334567899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhcc
Q 011189          468 VSNGTLFHHIHS  479 (491)
Q Consensus       468 ~~~GsL~~~L~~  479 (491)
                      +++|+|.++|..
T Consensus       102 ~~~~~L~~~l~~  113 (285)
T 3is5_A          102 CEGGELLERIVS  113 (285)
T ss_dssp             CSCCBHHHHHHH
T ss_pred             CCCCcHHHHHHh
Confidence            999999999864

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.15  E-value=9.2e-11  Score=111.92  Aligned_cols=93  Identities=30%  Similarity=0.487  Sum_probs=82.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+.........+.+.+|+.+++.++||||+++++++...+..++|+|
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            457888899999999999999975 6889999998755433456789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++++..
T Consensus        86 ~~~~~~L~~~l~~~   99 (276)
T 2yex_A           86 YCSGGELFDRIEPD   99 (276)
T ss_dssp             CCTTEEGGGGSBTT
T ss_pred             ecCCCcHHHHHhhc
Confidence            99999999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.15  E-value=6.8e-11  Score=117.69  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||.||++... +++.||+|.+.........+.+.+|+.++.+++||||+++++++...+..+|||||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            57888899999999999999975 57899999987664445568899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++..
T Consensus       113 ~~~~~L~~~l~~~  125 (360)
T 3eqc_A          113 MDGGSLDQVLKKA  125 (360)
T ss_dssp             CTTCBHHHHHHHH
T ss_pred             CCCCCHHHHHHHc
Confidence            9999999999864

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.15  E-value=6.6e-11  Score=116.16  Aligned_cols=94  Identities=32%  Similarity=0.478  Sum_probs=79.6

Q ss_pred             hccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .++|...+.||+|+||.||++..      ..++.||+|.+..........+|.+|+.++++++||||+++++++...+..
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            46788889999999999999984      246789999997654445567899999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|||||+++|+|.++|+...
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~  128 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETR  128 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTS
T ss_pred             EEEEecCCCCcHHHHHHhhc
Confidence            99999999999999998754

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.15  E-value=7.1e-11  Score=117.90  Aligned_cols=94  Identities=28%  Similarity=0.441  Sum_probs=82.1

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ..++|...+.||+|+||.||++... +++.||+|.+.... .....+.+.+|+.++++++||||+++++++...+..++|
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            3567888899999999999999864 57899999986543 224557899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.++|..+
T Consensus       107 ~e~~~gg~L~~~l~~~  122 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAR  122 (362)
T ss_dssp             ECCCCSCBHHHHHTTC
T ss_pred             EecCCCCCHHHHHHHc
Confidence            9999999999999765

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.15  E-value=1.3e-10  Score=113.77  Aligned_cols=90  Identities=28%  Similarity=0.384  Sum_probs=78.3

Q ss_pred             ccccceeccCCcceEEEEEEc-----CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--CccEE
Q 011189          391 YDKSNFLGEGGFGSVYRGVLS-----DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVPLL  463 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  463 (491)
                      |...+.||+|+||+||++.+.     +++.||+|.++........+.|.+|+.++++++||||+++++++...  ...++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            377889999999999998753     57889999998765545668899999999999999999999999884  56789


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++++..
T Consensus       113 v~e~~~~~~L~~~l~~~  129 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRH  129 (318)
T ss_dssp             EECCCTTCBHHHHGGGS
T ss_pred             EEecccCCcHHHHHhhC
Confidence            99999999999999865

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.15  E-value=1.9e-11  Score=123.96  Aligned_cols=99  Identities=20%  Similarity=0.250  Sum_probs=83.1

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      .++....++|...+.||+|+||+||+++.. +++.+|+|.++....  ....+.+.+|+.++..++|||||++++++...
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            344455678999999999999999999975 578999999865321  11234588999999999999999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +..+|||||+++|+|.++|+..
T Consensus       142 ~~~~lV~E~~~gg~L~~~l~~~  163 (410)
T 3v8s_A          142 RYLYMVMEYMPGGDLVNLMSNY  163 (410)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHC
T ss_pred             CEEEEEEeCCCCCcHHHHHHcC
Confidence            9999999999999999999764

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.15  E-value=5.2e-11  Score=117.70  Aligned_cols=95  Identities=29%  Similarity=0.514  Sum_probs=79.6

Q ss_pred             hhccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  459 (491)
                      ..++|...+.||+|+||.||++..      ..+..||+|.+.........+.+.+|+.++.++ +||||+++++++...+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            456788889999999999999985      235689999997654434557899999999999 8999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccCC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..+|||||+++|+|.++|+...
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~~  144 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSKR  144 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTT
T ss_pred             ccEEEEecCCCCcHHHHHhhcc
Confidence            9999999999999999998764

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.15  E-value=2.7e-11  Score=122.97  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=85.1

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEE
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCL  456 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  456 (491)
                      ..++.....++|...+.||+|+||+||+++.+ +++.||+|.++...  .....+.+.+|..++.+++||||+++++++.
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            34445556788999999999999999999974 68999999986532  1123355889999999999999999999999


Q ss_pred             eCCccEEEEeccCCCChhhhhccC
Q 011189          457 QTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       457 ~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+..+|||||+++|+|.++|+..
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l~~~  155 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLLSKF  155 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHH
T ss_pred             eCCEEEEEEcCCCCCcHHHHHHhc
Confidence            999999999999999999999864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.14  E-value=6e-11  Score=115.49  Aligned_cols=87  Identities=30%  Similarity=0.572  Sum_probs=75.7

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|...+.||+|+||+||++.. .++.||+|.+...   ...+.|.+|+.++++++||||+++++++.  +..++||||+
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~   81 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE---SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA   81 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST---THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh---hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence            4677788999999999999998 5788999998654   24578999999999999999999999775  5689999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.++|+...
T Consensus        82 ~~~~L~~~l~~~~   94 (307)
T 2eva_A           82 EGGSLYNVLHGAE   94 (307)
T ss_dssp             TTCBHHHHHHCSS
T ss_pred             CCCCHHHHHhccC
Confidence            9999999998754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.14  E-value=8e-11  Score=115.70  Aligned_cols=92  Identities=26%  Similarity=0.391  Sum_probs=79.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-----hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-----RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      +.|...+.||+|+||.||++... +++.||+|.+......     ...+.+.+|+.++.+++||||+++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            56788899999999999999964 5889999998654321     13577999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +||||+++|+|.++|...
T Consensus        91 lv~e~~~~~~L~~~l~~~  108 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEK  108 (326)
T ss_dssp             EEEECCCSCBHHHHHTTS
T ss_pred             EEEEcCCCCCHHHHHHhc
Confidence            999999999999999764

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.14  E-value=6.2e-11  Score=118.25  Aligned_cols=91  Identities=23%  Similarity=0.342  Sum_probs=80.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++... .++.||+|.+.....  ..+.+.+|+.++++++||||+++++++...+..++|||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e   96 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA--IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME   96 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT--SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc--ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence            457888899999999999999975 688999999875432  23668899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.+++...
T Consensus        97 ~~~~~~L~~~l~~~  110 (361)
T 3uc3_A           97 YASGGELYERICNA  110 (361)
T ss_dssp             CCCSCBHHHHHHHH
T ss_pred             eCCCCCHHHHHHhc
Confidence            99999999999754

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.14  E-value=6.4e-11  Score=114.54  Aligned_cols=93  Identities=27%  Similarity=0.384  Sum_probs=80.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEecccc--chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEA--DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... .++.||+|.+...  ......+.|.+|+.++.+++||||+++++++...+..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            46788899999999999999854 6789999987543  23245678999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++++..+
T Consensus        91 e~~~g~~L~~~l~~~~  106 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHG  106 (294)
T ss_dssp             ECCCSCBHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHhcC
Confidence            9999999999998653

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.14  E-value=6.3e-11  Score=114.24  Aligned_cols=90  Identities=31%  Similarity=0.468  Sum_probs=76.8

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      +....+||+|+||.||++.. .+++.||+|.+..... ...+.+.+|+.+++.++||||+++++++...+..++||||++
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC----HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch-HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            34445899999999999996 4678999999876543 445789999999999999999999999999999999999999


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                      +++|.++++...
T Consensus       103 ~~~L~~~l~~~~  114 (295)
T 2clq_A          103 GGSLSALLRSKW  114 (295)
T ss_dssp             EEEHHHHHHHTT
T ss_pred             CCCHHHHHHhhc
Confidence            999999998754

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.14  E-value=5.3e-11  Score=118.26  Aligned_cols=93  Identities=23%  Similarity=0.360  Sum_probs=79.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch----hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK----IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      .+.|...+.||+|+||+||++... +++.||+|.+.....    ....+.+.+|+.++.+++||||+++++++...+..+
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            356888899999999999999864 688999999864321    113577999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      |||||+++|+|.++|...
T Consensus       103 lv~e~~~g~~L~~~l~~~  120 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKR  120 (351)
T ss_dssp             EEEECCSSCBHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHh
Confidence            999999999999888653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.14  E-value=5.8e-11  Score=119.05  Aligned_cols=87  Identities=26%  Similarity=0.460  Sum_probs=72.1

Q ss_pred             ccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCC
Q 011189          393 KSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      ..+.||+|+||.||++.. .+++.||+|.++.... ...+.|.+|+.++.+++||||+++++++...+..+|||||+++|
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM-KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            356799999999999986 4688999999876543 45578999999999999999999999999999999999999999


Q ss_pred             ChhhhhccC
Q 011189          472 TLFHHIHSK  480 (491)
Q Consensus       472 sL~~~L~~~  480 (491)
                      +|.++|...
T Consensus       172 ~L~~~l~~~  180 (373)
T 2x4f_A          172 ELFDRIIDE  180 (373)
T ss_dssp             EEHHHHHHT
T ss_pred             cHHHHHHhc
Confidence            999999764

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.14  E-value=9.6e-11  Score=117.99  Aligned_cols=93  Identities=25%  Similarity=0.353  Sum_probs=81.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .+.|...+.||+|+||.||++... +++.+|+|.+..... .....+.+|+.++.+++||||+++++++...+..+||||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch-hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence            356888899999999999999864 578999999876543 345679999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|....
T Consensus       129 ~~~gg~L~~~l~~~~  143 (387)
T 1kob_A          129 FLSGGELFDRIAAED  143 (387)
T ss_dssp             CCCCCBHHHHTTCTT
T ss_pred             cCCCCcHHHHHHhhc
Confidence            999999999998653

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.13  E-value=1.2e-10  Score=117.34  Aligned_cols=93  Identities=17%  Similarity=0.219  Sum_probs=81.9

Q ss_pred             hccccccceeccC--CcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEG--GFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G--~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|  +||+||++... +++.||+|.+.... .....+.+.+|+.++++++|||||++++++...+..+|
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            4578888999999  99999999975 68899999987543 22445778899999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+..
T Consensus       104 v~e~~~~~~L~~~l~~~  120 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTH  120 (389)
T ss_dssp             EEECCTTCBHHHHHHHT
T ss_pred             EEEccCCCCHHHHHhhh
Confidence            99999999999999865

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.13  E-value=1.3e-10  Score=111.42  Aligned_cols=93  Identities=24%  Similarity=0.429  Sum_probs=79.0

Q ss_pred             hccccccceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|+||.||++....    +..||+|.+.........+.|.+|+.++++++||||+++++++ ..+..++
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l   92 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI   92 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence            4578888999999999999998643    4579999987655445567899999999999999999999987 4567899


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++|+.+.
T Consensus        93 v~e~~~~~~L~~~l~~~~  110 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRK  110 (281)
T ss_dssp             EEECCTTEEHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHhcC
Confidence            999999999999998653

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.13  E-value=1.7e-10  Score=111.03  Aligned_cols=92  Identities=30%  Similarity=0.516  Sum_probs=77.7

Q ss_pred             ccccccc-eeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSN-FLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~-~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+ .||+|+||.||++...   .+..||+|.++........+.+.+|+.++.+++||||+++++++ ..+..++|
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            3444444 8999999999999853   57789999998765445678899999999999999999999998 56678999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|....
T Consensus        88 ~e~~~~~~L~~~l~~~~  104 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKR  104 (287)
T ss_dssp             EECCTTEEHHHHHTTCT
T ss_pred             EEeCCCCCHHHHHHhCC
Confidence            99999999999997653

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.13  E-value=6.6e-11  Score=116.90  Aligned_cols=92  Identities=18%  Similarity=0.243  Sum_probs=80.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||+||++... +++.||+|.++...  .....+.+.+|+.++.+++||||+++++++...+..+|||
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            57888899999999999999864 58899999986542  1134567899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|...
T Consensus        85 E~~~gg~L~~~l~~~   99 (337)
T 1o6l_A           85 EYANGGELFFHLSRE   99 (337)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             eCCCCCcHHHHHHhc
Confidence            999999999999754

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.13  E-value=6.1e-11  Score=126.64  Aligned_cols=85  Identities=31%  Similarity=0.533  Sum_probs=73.8

Q ss_pred             eeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCCCC
Q 011189          396 FLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGT  472 (491)
Q Consensus       396 ~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  472 (491)
                      .||+|+||.||+|.+.   .+..||||.++........++|.+|+.+|++++|||||++++++.. +..+|||||+++|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            6999999999999864   4567999999875443466889999999999999999999999865 66899999999999


Q ss_pred             hhhhhccCC
Q 011189          473 LFHHIHSKS  481 (491)
Q Consensus       473 L~~~L~~~~  481 (491)
                      |.++|+.++
T Consensus       422 L~~~l~~~~  430 (613)
T 2ozo_A          422 LHKFLVGKR  430 (613)
T ss_dssp             HHHHHTTCT
T ss_pred             HHHHHhhcc
Confidence            999998653

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.13  E-value=8e-11  Score=113.96  Aligned_cols=92  Identities=28%  Similarity=0.415  Sum_probs=75.8

Q ss_pred             ccccccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC--Ccc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT--KVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  461 (491)
                      ..|+..+.||+|+||.||++.+     ..++.||+|.+.........+.+.+|+.++.+++||||+++++++...  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3467778999999999999984     357899999987654434567899999999999999999999999876  568


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++|+|.++++..
T Consensus       101 ~lv~e~~~~~~L~~~l~~~  119 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKN  119 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHhc
Confidence            8999999999999999654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.13  E-value=9.6e-11  Score=115.47  Aligned_cols=93  Identities=28%  Similarity=0.545  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEcC-----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .+|...+.||+|+||+||++....     +..||+|.++..........|.+|+.++.+++||||+++++++...+..+|
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            345567889999999999998643     236999998765544556789999999999999999999999998899999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++|+...
T Consensus       124 v~e~~~~~~L~~~l~~~~  141 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKD  141 (333)
T ss_dssp             EEECCTTEEHHHHHHHTT
T ss_pred             EEeCCCCCcHHHHHHhCC
Confidence            999999999999998653

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.13  E-value=8.3e-11  Score=113.03  Aligned_cols=93  Identities=30%  Similarity=0.539  Sum_probs=81.8

Q ss_pred             hhccccccceeccCCcceEEEEEEcC-CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..++|...+.||+|+||.||++.... +..||+|.+.....  ..+.+.+|+.++++++||||+++++++...+..++||
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   88 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   88 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST--HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence            45678888999999999999999754 78899999876543  4578999999999999999999999999889999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++++...
T Consensus        89 e~~~~~~L~~~~~~~~  104 (288)
T 3kfa_A           89 EFMTYGNLLDYLRECN  104 (288)
T ss_dssp             ECCTTEEHHHHHHHCC
T ss_pred             EcCCCCcHHHHHHhcc
Confidence            9999999999998643

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.13  E-value=8.8e-11  Score=115.03  Aligned_cols=94  Identities=17%  Similarity=0.328  Sum_probs=81.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||+||++... +++.||+|.++...  .....+.+.+|+.+++.++||||+++++.+...+..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            356888899999999999999864 68899999986542  112456788999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus        85 ~e~~~gg~L~~~l~~~~  101 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQ  101 (318)
T ss_dssp             ECCCCSCBHHHHHHHTS
T ss_pred             EeCCCCCCHHHHHHHcC
Confidence            99999999999998653

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.12  E-value=7.4e-11  Score=115.99  Aligned_cols=93  Identities=22%  Similarity=0.381  Sum_probs=74.7

Q ss_pred             hccccccceeccCCcceEEEEEE----cCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      .++|...+.||+|+||.||++..    ..++.+|+|.++...   .......+.+|+.++++++||||+++++++...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            45788889999999999999986    468899999987542   11234668899999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .+|||||+++|+|.++|+..
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~  115 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLERE  115 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHhC
Confidence            99999999999999999754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.12  E-value=1.1e-10  Score=113.92  Aligned_cols=94  Identities=22%  Similarity=0.416  Sum_probs=79.2

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..++|...+.||+|+||+||++...+++.||+|++..... ....+.+.+|+.++++++||||+++++++...+..++||
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence            3467888899999999999999988899999999875432 234577899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||++ |+|.+++....
T Consensus        99 e~~~-~~l~~~~~~~~  113 (311)
T 3niz_A           99 EFME-KDLKKVLDENK  113 (311)
T ss_dssp             ECCS-EEHHHHHHTCT
T ss_pred             cCCC-CCHHHHHHhcc
Confidence            9998 58988887654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.12  E-value=1.6e-10  Score=110.64  Aligned_cols=93  Identities=24%  Similarity=0.346  Sum_probs=81.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||+||++... +++.||+|.+.... ......++.+|+..+..+ +||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            467888899999999999999975 68999999987542 223457789999999999 999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.++|+..
T Consensus        90 ~e~~~~~~L~~~l~~~  105 (289)
T 1x8b_A           90 NEYCNGGSLADAISEN  105 (289)
T ss_dssp             EECCTTCBHHHHHHHH
T ss_pred             EEecCCCcHHHHHHhh
Confidence            9999999999999864

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.11  E-value=1.3e-10  Score=111.07  Aligned_cols=91  Identities=24%  Similarity=0.472  Sum_probs=78.8

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ..++|...+.||+|+||.||++...+++.||+|.+.....  ..+.|.+|+.++++++||||+++++++. .+..++|||
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e   87 (279)
T 1qpc_A           11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE   87 (279)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc--cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEe
Confidence            3467888899999999999999988888999999876542  3577999999999999999999999875 556899999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++++..
T Consensus        88 ~~~~~~L~~~l~~~  101 (279)
T 1qpc_A           88 YMENGSLVDFLKTP  101 (279)
T ss_dssp             CCTTCBHHHHTTSH
T ss_pred             cCCCCCHHHHHhcC
Confidence            99999999999854

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.11  E-value=9.2e-11  Score=114.26  Aligned_cols=103  Identities=27%  Similarity=0.386  Sum_probs=85.5

Q ss_pred             ecHHHHHHhhccccccceeccCCcceEEEEEE------cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccE
Q 011189          379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKI  451 (491)
Q Consensus       379 ~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l  451 (491)
                      +...+.....++|...+.||+|+||+||++..      ..++.||+|.++........+.+.+|+.++.++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            33444555567899999999999999999984      245789999998765445567899999999999 79999999


Q ss_pred             EeEEEeCC-ccEEEEeccCCCChhhhhccCC
Q 011189          452 LGLCLQTK-VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       452 ~g~~~~~~-~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++++...+ ..++|+||+++|+|.++|+...
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  127 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  127 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCT
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcc
Confidence            99987755 5899999999999999998764

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.11  E-value=8.9e-11  Score=112.19  Aligned_cols=92  Identities=24%  Similarity=0.385  Sum_probs=80.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||.||++... .+..+|+|++..... ...+.+.+|+.++++++||||+++++++...+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV-EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc-chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            456888899999999999999965 467899999876433 345789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.+++..+
T Consensus        87 ~~~~~~L~~~~~~~  100 (277)
T 3f3z_A           87 LCTGGELFERVVHK  100 (277)
T ss_dssp             CCCSCBHHHHHHHH
T ss_pred             ccCCCcHHHHHHHc
Confidence            99999999998764

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.11  E-value=1.2e-10  Score=119.47  Aligned_cols=95  Identities=24%  Similarity=0.367  Sum_probs=80.4

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ..++|...+.||+|+||.||++.. .+++.+|+|.+.... .....+.+.+|+.++++++||||+++++++...+..+||
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            356788889999999999999985 468899999986543 224457799999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|..+.
T Consensus        89 ~E~~~gg~L~~~i~~~~  105 (444)
T 3soa_A           89 FDLVTGGELFEDIVARE  105 (444)
T ss_dssp             ECCCBCCBHHHHHHHCS
T ss_pred             EEeCCCCCHHHHHHHcC
Confidence            99999999999988653

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.11  E-value=8.6e-11  Score=118.12  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=80.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... .++.||+|.+....  .....+.+.+|+.++.+++|||||++++++...+..++||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            57888899999999999999864 57899999986532  1134577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++|+...
T Consensus        95 e~~~gg~L~~~l~~~~  110 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNV  110 (384)
T ss_dssp             CCCTTEEHHHHHHTTC
T ss_pred             ecCCCCcHHHHHHhcC
Confidence            9999999999998653

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.10  E-value=1.1e-10  Score=115.75  Aligned_cols=92  Identities=25%  Similarity=0.376  Sum_probs=74.1

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..+.|...+.||+|+||+||++... .++.||+|.++...   ..+.+.+|+.++.+++||||+++++++...+..+|||
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~  127 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVL  127 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEE
Confidence            3466888899999999999999975 47889999987543   3466889999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++|..+.
T Consensus       128 e~~~~~~L~~~l~~~~  143 (349)
T 2w4o_A          128 ELVTGGELFDRIVEKG  143 (349)
T ss_dssp             CCCCSCBHHHHHTTCS
T ss_pred             EeCCCCCHHHHHHhcC
Confidence            9999999999998653

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.10  E-value=8.7e-11  Score=114.88  Aligned_cols=92  Identities=22%  Similarity=0.429  Sum_probs=66.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++... +++.||+|.++........+.+.+|+.++++++||||+++++++...+..+||||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            356788899999999999999854 5889999998755433345778999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |++ |+|.+++...
T Consensus        84 ~~~-~~L~~~l~~~   96 (317)
T 2pmi_A           84 FMD-NDLKKYMDSR   96 (317)
T ss_dssp             CCC-CBHHHHHHHH
T ss_pred             ecC-CCHHHHHHhc
Confidence            998 6999998753

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.10  E-value=1.8e-10  Score=111.59  Aligned_cols=92  Identities=22%  Similarity=0.403  Sum_probs=80.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.|...+.||+|+||.||++.. .+++.||+|.+.........+.+.+|+.++.+++||||+++++.+...+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            4577788999999999999986 468899999987654334568899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++++|.++++..
T Consensus       102 ~~~~~L~~~~~~~  114 (303)
T 3a7i_A          102 LGGGSALDLLEPG  114 (303)
T ss_dssp             CTTEEHHHHHTTS
T ss_pred             CCCCcHHHHHhcC
Confidence            9999999999753

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.10  E-value=1.4e-10  Score=115.10  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=80.4

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||+||++... +++.||+|.+....  .....+.+.+|+.++..++||||+++++.+...+..+|||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            57888899999999999999975 68899999986542  1134577899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|+..
T Consensus       121 e~~~gg~L~~~l~~~  135 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRI  135 (350)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHc
Confidence            999999999999864

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.09  E-value=2e-10  Score=110.00  Aligned_cols=92  Identities=25%  Similarity=0.391  Sum_probs=79.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-----hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-----RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...+.||+|+||.||++... +++.+|+|.+......     ...+.+.+|+.++.+++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            46788899999999999999975 5889999987654211     13578999999999999999999999999999999


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +||||+++++|.++|..+
T Consensus        85 lv~e~~~~~~L~~~l~~~  102 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEK  102 (283)
T ss_dssp             EEEECCCSCBHHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHhc
Confidence            999999999999999754

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.09  E-value=1.6e-10  Score=114.59  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=79.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||+||+++.. +++.+|+|.++...  .....+.+.+|..++.++ +||||+++++++...+..+||
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            56788899999999999999975 57899999987542  224457788999999988 899999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.++|+..
T Consensus        89 ~e~~~gg~L~~~l~~~  104 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQ  104 (345)
T ss_dssp             ECCCCSCBHHHHHHHH
T ss_pred             EeCCCCCcHHHHHHHc
Confidence            9999999999999864

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.09  E-value=1.5e-10  Score=110.19  Aligned_cols=91  Identities=27%  Similarity=0.511  Sum_probs=74.5

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccch---hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK---IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++.. .++.+|+|.++....   ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            5677789999999999999997 588999999865432   123477999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++++..
T Consensus        86 e~~~~~~L~~~~~~~  100 (271)
T 3dtc_A           86 EFARGGPLNRVLSGK  100 (271)
T ss_dssp             ECCTTEEHHHHHTSS
T ss_pred             EcCCCCCHHHHhhcC
Confidence            999999999999754

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.08  E-value=2.6e-10  Score=111.18  Aligned_cols=91  Identities=23%  Similarity=0.397  Sum_probs=77.7

Q ss_pred             ccccc-cceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDK-SNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~-~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      +.|.. .+.||+|+||+||++.. .+++.||+|.+..... ...+.+.+|+.++.++ +||||+++++++...+..++||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG-HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS-CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc-hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence            44555 36799999999999984 4688999999876543 3457799999999985 7999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|+..
T Consensus        91 e~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           91 EKMRGGSILSHIHKR  105 (316)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             EcCCCCcHHHHHhcc
Confidence            999999999999864

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.08  E-value=1.6e-10  Score=111.61  Aligned_cols=93  Identities=31%  Similarity=0.556  Sum_probs=77.4

Q ss_pred             ccccccceeccCCcceEEEEEEcCC----cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~l  463 (491)
                      ..|...+.||+|+||+||++...+.    ..+|+|.+.........+.|.+|+.++++++||||+++++++.. .+..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            4567778999999999999986432    36899998776554567889999999999999999999998754 457899


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.++++...
T Consensus       105 v~e~~~~~~L~~~l~~~~  122 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNET  122 (298)
T ss_dssp             EEECCTTCBHHHHHHCTT
T ss_pred             EEeCCCCCCHHHHHHhcc
Confidence            999999999999998653

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.08  E-value=1.7e-10  Score=112.93  Aligned_cols=93  Identities=27%  Similarity=0.365  Sum_probs=80.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-----hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-----RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .+.|...+.||+|+||.||++... +++.||+|.+......     ...+++.+|+.++.+++||||+++++++...+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            456888899999999999999965 5889999998654221     1357799999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++|+|.++|...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~  109 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQK  109 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTC
T ss_pred             EEEEEcCCCCcHHHHHHhc
Confidence            9999999999999999865

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.08  E-value=4.2e-10  Score=109.39  Aligned_cols=92  Identities=26%  Similarity=0.396  Sum_probs=78.8

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEecccc--chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA--DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.++..  ......+.+.+|+.++++++||||+++++.+...+..++|
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            35788889999999999999986 46889999998753  2234567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhcc
Q 011189          465 YEFVSNGTLFHHIHS  479 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~  479 (491)
                      |||+++|+|.+++..
T Consensus       111 ~e~~~~~~L~~~l~~  125 (310)
T 2wqm_A          111 LELADAGDLSRMIKH  125 (310)
T ss_dssp             EECCCSCBHHHHHHH
T ss_pred             EecCCCCCHHHHHHH
Confidence            999999999999975

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.08  E-value=1.1e-10  Score=116.87  Aligned_cols=92  Identities=32%  Similarity=0.562  Sum_probs=76.5

Q ss_pred             cccccceeccCCcceEEEEEEc--CC--cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe-CCccEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS--DD--TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ-TKVPLLV  464 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~--~~--~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv  464 (491)
                      .|...+.||+|+||+||++.+.  ++  ..||+|.++........++|.+|+.++++++||||+++++++.. .+..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            3455678999999999999863  22  36899998765444567889999999999999999999998765 4578999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus       170 ~e~~~~g~L~~~l~~~~  186 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNET  186 (373)
T ss_dssp             EECCTTCBHHHHHHCTT
T ss_pred             EECCCCCCHHHHHhhcc
Confidence            99999999999998654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.08  E-value=1.8e-10  Score=119.00  Aligned_cols=92  Identities=26%  Similarity=0.388  Sum_probs=80.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... +++.||+|.+.....  ....+.+.+|+.+++.++||||+++++++...+..+|||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            46777889999999999999975 689999999865421  123567999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|..+
T Consensus        96 E~~~gg~L~~~l~~~  110 (476)
T 2y94_A           96 EYVSGGELFDYICKN  110 (476)
T ss_dssp             ECCSSEEHHHHTTSS
T ss_pred             eCCCCCcHHHHHHhc
Confidence            999999999999865

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.08  E-value=2.2e-10  Score=112.45  Aligned_cols=93  Identities=24%  Similarity=0.525  Sum_probs=76.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcE--EEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQ--VAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~--vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||.||++... ++..  +|+|.++........+.+.+|++++.++ +||||+++++++...+..+||
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            56788899999999999999864 4554  4999887644334557799999999999 899999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+..+
T Consensus       105 ~e~~~~~~L~~~l~~~~  121 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSR  121 (327)
T ss_dssp             ECCCTTCBHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHhcc
Confidence            99999999999998753

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.08  E-value=1.3e-10  Score=115.57  Aligned_cols=93  Identities=26%  Similarity=0.325  Sum_probs=80.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|+||+||+++.. +++.||+|.++...  .....+.+.+|..++..+ +||||+++++++...+..+|
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            467888999999999999999965 57899999987542  223456788999999988 79999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+..
T Consensus       102 v~E~~~gg~L~~~l~~~  118 (353)
T 3txo_A          102 VMEFVNGGDLMFHIQKS  118 (353)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHc
Confidence            99999999999999764

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.07  E-value=3e-10  Score=110.43  Aligned_cols=92  Identities=24%  Similarity=0.399  Sum_probs=79.6

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|+||+||++... +++.||+|++.... .....+.+.+|+.++.+++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            46778899999999999999975 48899999886543 22345778999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.++++..
T Consensus        83 ~~~~~~l~~~~~~~   96 (311)
T 4agu_A           83 YCDHTVLHELDRYQ   96 (311)
T ss_dssp             CCSEEHHHHHHHTS
T ss_pred             eCCCchHHHHHhhh
Confidence            99999999988754

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.07  E-value=2.1e-10  Score=109.53  Aligned_cols=92  Identities=26%  Similarity=0.392  Sum_probs=80.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... +++.||+|.+....  .....+.+.+|+.+++.++||||+++++++...+..++|+
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            56778899999999999999975 68899999986542  1123567999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++++|.+++...
T Consensus        91 e~~~~~~L~~~l~~~  105 (276)
T 2h6d_A           91 EYVSGGELFDYICKH  105 (276)
T ss_dssp             ECCCSCBHHHHHHHH
T ss_pred             eccCCCcHHHHHhcc
Confidence            999999999999764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.07  E-value=8.4e-11  Score=113.72  Aligned_cols=93  Identities=20%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..++|...+.||+|+||.||++.. .+++.||+|.+.........+++.+|+.++.+++||||+++++++...+..++||
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   92 (303)
T 2vwi_A           13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM   92 (303)
T ss_dssp             CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred             chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence            456788889999999999999984 4688999999876543345677999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||+++|+|.++++.
T Consensus        93 e~~~~~~L~~~l~~  106 (303)
T 2vwi_A           93 KLLSGGSVLDIIKH  106 (303)
T ss_dssp             ECCTTCBHHHHHHH
T ss_pred             hhccCCchHHHHHH
Confidence            99999999999974

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.07  E-value=2.8e-10  Score=111.61  Aligned_cols=91  Identities=25%  Similarity=0.395  Sum_probs=78.5

Q ss_pred             ccccccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCcc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~  461 (491)
                      ++|...+.||+|+||.||++.+     ..++.||+|.+..... ...+.+.+|+.++++++|+||+++++++..  .+..
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP-DQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCH-HHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence            5677889999999999999985     3578999999876544 456779999999999999999999999874  4568


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++|+|.++|+..
T Consensus       102 ~lv~e~~~~~~L~~~l~~~  120 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRH  120 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             EEEEeecCCCCHHHHHHhc
Confidence            8999999999999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.07  E-value=2.5e-10  Score=110.40  Aligned_cols=92  Identities=21%  Similarity=0.356  Sum_probs=78.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .+.|...+.||+|+||.||++... +++.+|+|.+..... ...+.+.+|+.++.+++||||+++++++...+..++|||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE-EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH-HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence            456888899999999999999975 478999999876543 346789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++++|.+++...
T Consensus        97 ~~~~~~l~~~~~~~  110 (302)
T 2j7t_A           97 FCPGGAVDAIMLEL  110 (302)
T ss_dssp             CCTTEEHHHHHHHH
T ss_pred             eCCCCcHHHHHHhh
Confidence            99999999998753

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.07  E-value=2.8e-10  Score=111.62  Aligned_cols=92  Identities=27%  Similarity=0.460  Sum_probs=78.2

Q ss_pred             ccccccceeccCCcceEEEEEE-----cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC--cc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-----SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK--VP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~  461 (491)
                      ++|...+.||+|+||.||++.+     .+++.||+|.+..... ...+.|.+|+.++++++||||+++++++...+  ..
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE-EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCS-HHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCH-HHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            4677788999999999999985     3578999999876544 45678999999999999999999999986543  78


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++|+||+++|+|.++|+...
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~  139 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHK  139 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHhcc
Confidence            99999999999999998754

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.07  E-value=1.8e-10  Score=110.91  Aligned_cols=91  Identities=23%  Similarity=0.388  Sum_probs=78.7

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||+||++....++.+|+|++..... ....+.+.+|+.++++++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            35777889999999999999987799999999865432 12346788999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++ +|.+++...
T Consensus        82 ~~~-~l~~~~~~~   93 (288)
T 1ob3_A           82 LDQ-DLKKLLDVC   93 (288)
T ss_dssp             CSE-EHHHHHHTS
T ss_pred             cCC-CHHHHHHhc
Confidence            985 999998864

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.07  E-value=2.3e-10  Score=110.95  Aligned_cols=92  Identities=25%  Similarity=0.382  Sum_probs=77.9

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++... +++.||+|.++.... ...+.+.+|+.++.+++||||+++++++...+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA-FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ   86 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc-cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence            457888899999999999999964 688999999876533 234678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.+++...
T Consensus        87 ~~~~~~L~~~l~~~  100 (304)
T 2jam_A           87 LVSGGELFDRILER  100 (304)
T ss_dssp             CCCSCBHHHHHHHH
T ss_pred             cCCCccHHHHHHHc
Confidence            99999999998754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=111.54  Aligned_cols=92  Identities=23%  Similarity=0.365  Sum_probs=72.9

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh-------------------------hHHHHHHHHHHHHH
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI-------------------------RVSQEFQHEMGIVS  441 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~-------------------------~~~~~f~~E~~~l~  441 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+......                         ...+.+.+|+.+++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            357888899999999999999864 5789999998654210                         12356899999999


Q ss_pred             cCCCCccccEEeEEEe--CCccEEEEeccCCCChhhhhcc
Q 011189          442 QINHKNVVKILGLCLQ--TKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       442 ~l~H~niv~l~g~~~~--~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      +++||||+++++++..  .+..+|||||+++|+|.+++..
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~  131 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL  131 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc
Confidence            9999999999999986  4578999999999999887654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.06  E-value=2.5e-10  Score=110.16  Aligned_cols=92  Identities=26%  Similarity=0.483  Sum_probs=78.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe---------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ---------  457 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~---------  457 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.+....  ...+.+.+|+.++.+++||||+++++.+..         
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE--EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH--HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH--HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            45788889999999999999996 468899999986532  345789999999999999999999998865         


Q ss_pred             ----CCccEEEEeccCCCChhhhhccCC
Q 011189          458 ----TKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       458 ----~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                          .+..++||||+++|+|.++|+...
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~  110 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSEN  110 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccc
Confidence                346789999999999999998643

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.06  E-value=2.1e-10  Score=119.68  Aligned_cols=94  Identities=26%  Similarity=0.423  Sum_probs=77.7

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh------------hHHHHHHHHHHHHHcCCCCccccEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI------------RVSQEFQHEMGIVSQINHKNVVKILG  453 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~------------~~~~~f~~E~~~l~~l~H~niv~l~g  453 (491)
                      ..++|...+.||+|+||+||++... .++.+|+|.+......            ...+.+.+|+.++++++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3467888899999999999999964 5789999998654211            23467999999999999999999999


Q ss_pred             EEEeCCccEEEEeccCCCChhhhhccC
Q 011189          454 LCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       454 ~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++...+..+|||||+++|+|.++|...
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~  140 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINR  140 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHc
Confidence            999999999999999999999998764

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.06  E-value=2.2e-10  Score=109.45  Aligned_cols=94  Identities=23%  Similarity=0.418  Sum_probs=81.1

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.+.....  ....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35688889999999999999986 4688999999865421  12347799999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||+++++|.++++...
T Consensus        90 ~e~~~~~~L~~~l~~~~  106 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRV  106 (278)
T ss_dssp             EECCTTEEHHHHHHTCS
T ss_pred             EecCCCCcHHHHHhhcc
Confidence            99999999999998753

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.06  E-value=1.9e-10  Score=117.20  Aligned_cols=95  Identities=21%  Similarity=0.311  Sum_probs=76.8

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-------hhHHHHHHHHHHHHHcCCCCccccEEeEEEe
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-------IRVSQEFQHEMGIVSQINHKNVVKILGLCLQ  457 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  457 (491)
                      ...++|...+.||+|+||+||++... +++.||+|.+.....       ......+.+|+.++++++||||+++++++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            34578888999999999999999864 578999999865321       112235889999999999999999999864 


Q ss_pred             CCccEEEEeccCCCChhhhhccCC
Q 011189          458 TKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       458 ~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+..+|||||+++|+|.+++..+.
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~~  234 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGNK  234 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSSC
T ss_pred             cCceEEEEEcCCCCcHHHHHhccC
Confidence            556789999999999999998653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.06  E-value=2.1e-10  Score=111.89  Aligned_cols=91  Identities=29%  Similarity=0.415  Sum_probs=76.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVPL  462 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  462 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.+..... ...+.+.+|+.+++.++||||+++++++..    ....+
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQ-QDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSH-HHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCH-HHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            35788889999999999999996 5789999999865443 456789999999999999999999999873    33778


Q ss_pred             EEEeccCCCChhhhhcc
Q 011189          463 LVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~  479 (491)
                      +|+||+++|+|.++|+.
T Consensus       107 lv~e~~~~~~L~~~l~~  123 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIER  123 (317)
T ss_dssp             EEEECCTTCBHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHH
Confidence            99999999999999986

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.06  E-value=1.3e-10  Score=113.17  Aligned_cols=93  Identities=25%  Similarity=0.340  Sum_probs=78.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc----
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV----  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----  460 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.++...  .......|.+|+.++.+++||||+++++++.....    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            35788889999999999999995 568899999987542  22345779999999999999999999999876554    


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++||||+++|+|.++++..
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~  110 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTE  110 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHH
T ss_pred             cEEEEecCCCCCHHHHHHhc
Confidence            39999999999999999864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.06  E-value=4.2e-10  Score=107.56  Aligned_cols=93  Identities=17%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~l  463 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+.... .....+.+.+|+.++++++||||+++++.+..  .+..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            357888899999999999999874 68899999986543 22456789999999999999999999998865  457899


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|...
T Consensus        85 v~e~~~~~~L~~~l~~~  101 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKG  101 (279)
T ss_dssp             EEECCTTEEHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHhh
Confidence            99999999999999863

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.05  E-value=3e-10  Score=111.55  Aligned_cols=92  Identities=26%  Similarity=0.583  Sum_probs=72.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|...+.||+|+||+||++... +++    .||+|.++........++|.+|+.++++++||||+++++++...+ .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence            46778899999999999999863 333    468888865544345678999999999999999999999998754 779


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      |+||+++|+|.++++...
T Consensus        94 v~e~~~~g~L~~~l~~~~  111 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHK  111 (327)
T ss_dssp             EEECCTTCBHHHHHHHST
T ss_pred             EEEecCCCcHHHHHHhcC
Confidence            999999999999998754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.05  E-value=2.5e-10  Score=110.13  Aligned_cols=92  Identities=25%  Similarity=0.457  Sum_probs=77.0

Q ss_pred             cccccceeccCCcceEEEEEEcC-C---cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc-EEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD-D---TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP-LLV  464 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~-~lv  464 (491)
                      .|...++||+|+||+||++...+ +   ..+|+|.+.........+.|.+|+.++++++||||+++++++...+.. ++|
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            34455889999999999998532 2   379999987665545678899999999999999999999999876654 899


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||+.+|+|.++++...
T Consensus       102 ~e~~~~~~L~~~~~~~~  118 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQ  118 (298)
T ss_dssp             ECCCTTCBHHHHHHCTT
T ss_pred             EecccCCCHHHHHhccc
Confidence            99999999999998743

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.05  E-value=3.3e-10  Score=108.58  Aligned_cols=93  Identities=28%  Similarity=0.454  Sum_probs=80.8

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+.... .....+.+.+|+.++++++||||+++++++...+..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            467888899999999999999864 57899999986543 2244577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.+++..+
T Consensus        85 e~~~~~~l~~~~~~~   99 (284)
T 3kk8_A           85 DLVTGGELFEDIVAR   99 (284)
T ss_dssp             CCCCSCBHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhc
Confidence            999999999888754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.05  E-value=4.3e-10  Score=108.67  Aligned_cols=88  Identities=19%  Similarity=0.405  Sum_probs=73.1

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHc--CCCCccccEEeEEEeC----Ccc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ--INHKNVVKILGLCLQT----KVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~----~~~  461 (491)
                      .++|...+.||+|+||+||++.. +++.||||.+....    ...+.+|.+++..  ++||||+++++.+...    ...
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~----~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD----EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG----HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc----chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            45788889999999999999998 78899999987543    3556677777766  7999999999997653    357


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++|+|.++|+..
T Consensus        82 ~lv~e~~~~g~L~~~l~~~  100 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLT  100 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTC
T ss_pred             EEehhhccCCCHHHHHhhc
Confidence            8999999999999999754

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.05  E-value=1.8e-10  Score=114.09  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCcc
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  461 (491)
                      ...++|...+.||+|+||+||+++.+ +++.||+|.++...  .....+.+.+|..++..+ +||||+++++++...+..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            34578888999999999999999975 57899999987542  112356788999999877 999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|||||+++|+|.++|+..
T Consensus        94 ~lv~E~~~gg~L~~~l~~~  112 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSC  112 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHHc
Confidence            9999999999999999864

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.05  E-value=3.6e-10  Score=108.54  Aligned_cols=91  Identities=40%  Similarity=0.632  Sum_probs=75.1

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhh---H---HHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIR---V---SQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~---~---~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      ++|...+.||+|+||+||++.. .+++.||+|.+.......   .   .+.|.+|+.++.+++||||+++++++...  .
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP--P   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT--T
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC--C
Confidence            5677888999999999999996 468899999986543211   1   16799999999999999999999987443  4


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||||+++|+|.+++..+.
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~  116 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKA  116 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTT
T ss_pred             eEEEEecCCCCHHHHHhccc
Confidence            79999999999999997654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.04  E-value=5.1e-10  Score=107.17  Aligned_cols=92  Identities=28%  Similarity=0.484  Sum_probs=77.8

Q ss_pred             hccccccceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|+||+||++....    +..||+|.+.........+.|.+|+.++++++||||+++++++. .+..++
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE-EEPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC-SSSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCCEE
Confidence            4678888999999999999998643    23699999887654456688999999999999999999999865 456789


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++++..
T Consensus        90 v~e~~~~~~L~~~l~~~  106 (281)
T 3cc6_A           90 IMELYPYGELGHYLERN  106 (281)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHhc
Confidence            99999999999999864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.04  E-value=5e-10  Score=108.98  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=81.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+....  .....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            467888999999999999999964 67899999987542  223457899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||+++++|.++++..
T Consensus       113 ~e~~~~~~L~~~l~~~  128 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQ  128 (309)
T ss_dssp             EECCCCEEHHHHHHHH
T ss_pred             EEecCCCCHHHHHHhc
Confidence            9999999999999864

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.04  E-value=1.6e-10  Score=116.67  Aligned_cols=93  Identities=22%  Similarity=0.289  Sum_probs=78.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...++||+|+||+||+++.. +++.+|+|.++...  .....+.+.+|..++.++ +|||||++++++...+..+|
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            457888899999999999999975 57889999987542  212345688999999887 89999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+..
T Consensus       131 V~E~~~gg~L~~~l~~~  147 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQ  147 (396)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEEcCCCCcHHHHHHHc
Confidence            99999999999999864

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.04  E-value=2.8e-10  Score=119.76  Aligned_cols=94  Identities=23%  Similarity=0.303  Sum_probs=81.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+....  .......+.+|+.+|.+++|||||++++++...+..+||
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            356888899999999999999974 68999999986532  112346789999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus       263 mEy~~gg~L~~~l~~~~  279 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMG  279 (576)
T ss_dssp             ECCCCSCBHHHHHHSSS
T ss_pred             EEcCCCCcHHHHHHhcC
Confidence            99999999999998654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.04  E-value=2.8e-10  Score=118.40  Aligned_cols=93  Identities=20%  Similarity=0.377  Sum_probs=76.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .+.|...+.||+|+||+||++... .+..+|+|.+.... .......+.+|+.+++.++|||||++++++...+..+|||
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            346888899999999999999975 67899999987543 1123577899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.+++...
T Consensus       116 e~~~~g~L~~~~~~~  130 (494)
T 3lij_A          116 ECYKGGELFDEIIHR  130 (494)
T ss_dssp             ECCCSCBHHHHHHHH
T ss_pred             ecCCCCcHHHHHHHc
Confidence            999999999988754

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.03  E-value=4.7e-10  Score=111.26  Aligned_cols=91  Identities=23%  Similarity=0.356  Sum_probs=77.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      +.|...+.||+|+||+||++.. .+++.||||++....  .....++|.+|+.++.+++||||+++++++...+..+|||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            4577788999999999999985 578899999986542  2234578999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||++ |+|.+++...
T Consensus       134 e~~~-g~l~~~l~~~  147 (348)
T 1u5q_A          134 EYCL-GSASDLLEVH  147 (348)
T ss_dssp             ECCS-EEHHHHHHHH
T ss_pred             ecCC-CCHHHHHHHh
Confidence            9997 7898888643

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.03  E-value=3.9e-10  Score=110.71  Aligned_cols=84  Identities=27%  Similarity=0.397  Sum_probs=74.1

Q ss_pred             cceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEeccCCC
Q 011189          394 SNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFVSNG  471 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~~G  471 (491)
                      .+.||+|+||.||++... +++.||+|.+...    ....+.+|+.++..+. ||||+++++++...+..+|||||+++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~   91 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG   91 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence            378999999999999974 5789999998653    3356789999999997 999999999999999999999999999


Q ss_pred             ChhhhhccCC
Q 011189          472 TLFHHIHSKS  481 (491)
Q Consensus       472 sL~~~L~~~~  481 (491)
                      +|.++|+.+.
T Consensus        92 ~L~~~l~~~~  101 (325)
T 3kn6_A           92 ELFERIKKKK  101 (325)
T ss_dssp             BHHHHHHHCS
T ss_pred             cHHHHHHhcC
Confidence            9999998753

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.03  E-value=4.8e-10  Score=108.12  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=80.3

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||+||++... .++.+|+|.+....  .....+.+.+|+.++++++|+||+++++++...+..++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            356778899999999999999975 47889999876542  224567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++++|.+++...
T Consensus        94 ~e~~~~~~L~~~~~~~  109 (294)
T 2rku_A           94 LELCRRRSLLELHKRR  109 (294)
T ss_dssp             EECCTTCBHHHHHHHH
T ss_pred             EecCCCCCHHHHHHhc
Confidence            9999999999998754

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.03  E-value=2.8e-10  Score=108.93  Aligned_cols=93  Identities=24%  Similarity=0.444  Sum_probs=79.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||+||++... ++..||+|.+....  .......+.+|+.++++++||||+++++++...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            457888899999999999999865 46789999986532  112346789999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.+++...
T Consensus        88 ~e~~~~~~l~~~l~~~  103 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKL  103 (279)
T ss_dssp             ECCCTTEEHHHHHHHH
T ss_pred             EecCCCCcHHHHHHhc
Confidence            9999999999998754

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.03  E-value=1.4e-10  Score=114.75  Aligned_cols=88  Identities=18%  Similarity=0.348  Sum_probs=77.2

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhh----------------HHHHHHHHHHHHHcCCCCccccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIR----------------VSQEFQHEMGIVSQINHKNVVKI  451 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~----------------~~~~f~~E~~~l~~l~H~niv~l  451 (491)
                      .++|...+.||+|+||.||++.. +++.||+|.+.......                ..+.|.+|+.++.+++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            35788889999999999999998 89999999986432110                12789999999999999999999


Q ss_pred             EeEEEeCCccEEEEeccCCCChhhh
Q 011189          452 LGLCLQTKVPLLVYEFVSNGTLFHH  476 (491)
Q Consensus       452 ~g~~~~~~~~~lv~Ey~~~GsL~~~  476 (491)
                      ++++...+..++||||+++|+|.++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~  133 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKF  133 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHH
Confidence            9999999999999999999999999

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.03  E-value=3.7e-10  Score=117.18  Aligned_cols=94  Identities=24%  Similarity=0.374  Sum_probs=81.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++... .++.||||.+....  .....+.+.+|+.++++++||||+++++++...+..++|
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            356888899999999999999965 68899999985432  123467899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||+++|+|.+++..+.
T Consensus       105 ~e~~~~~~L~~~~~~~~  121 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRK  121 (484)
T ss_dssp             ECCCCSCBHHHHHHTCS
T ss_pred             EecCCCCCHHHHHHhcC
Confidence            99999999999998653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.03  E-value=1.8e-10  Score=112.26  Aligned_cols=98  Identities=17%  Similarity=0.212  Sum_probs=77.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..++||+|+||+||++... +++.||||++.... .......+.+|+..+.++ +|+||+++++++...+..+|||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            57888899999999999999975 68999999876532 223445566677666655 8999999999999999999999


Q ss_pred             eccCCCChhhhhccCCCCcccccc
Q 011189          466 EFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ||+ +|+|.+++...+.  .++|.
T Consensus       137 e~~-~~~L~~~~~~~~~--~l~~~  157 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGA--SLPEA  157 (311)
T ss_dssp             ECC-CCBHHHHHHHHCS--CCCHH
T ss_pred             ecc-CCCHHHHHHhcCC--CCCHH
Confidence            999 6799999886532  34543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.02  E-value=3.2e-10  Score=117.74  Aligned_cols=93  Identities=24%  Similarity=0.420  Sum_probs=80.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||+||++... +++.||+|.+.... .....+.+.+|+.++++++||||+++++++...+..++|+
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            457888899999999999999964 68899999986432 1124577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.+++...
T Consensus       101 e~~~~~~L~~~~~~~  115 (486)
T 3mwu_A          101 ELYTGGELFDEIIKR  115 (486)
T ss_dssp             CCCCSCBHHHHHHHH
T ss_pred             EcCCCCcHHHHHHhc
Confidence            999999999988754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.02  E-value=5e-10  Score=110.34  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=80.3

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++... .++.+|+|.+....  .....+.+.+|+.++++++|+||+++++++...+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            456778899999999999999975 47889999986542  224567899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++++|.+++..+
T Consensus       120 ~e~~~~~~L~~~~~~~  135 (335)
T 2owb_A          120 LELCRRRSLLELHKRR  135 (335)
T ss_dssp             ECCCTTCBHHHHHHHH
T ss_pred             EecCCCCCHHHHHhcc
Confidence            9999999999998754

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.02  E-value=3.7e-10  Score=110.45  Aligned_cols=94  Identities=26%  Similarity=0.485  Sum_probs=71.4

Q ss_pred             hhccccccceeccCCcceEEEEEEcCC----cEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDD----TQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~----~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      ..++|...+.||+|+||.||++.....    ..||+|.++... .....+.|.+|+.++++++||||+++++++...+..
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            346788889999999999999986433    279999987542 224567899999999999999999999999876654


Q ss_pred             ------EEEEeccCCCChhhhhccC
Q 011189          462 ------LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ------~lv~Ey~~~GsL~~~L~~~  480 (491)
                            ++|+||+++|+|.+++...
T Consensus       101 ~~~~~~~~v~e~~~~~~L~~~l~~~  125 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDLHAFLLAS  125 (323)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHH
T ss_pred             cCCCccEEEEEeccCCcHHHHHHhh
Confidence                  8999999999999999753

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.02  E-value=4.7e-10  Score=117.53  Aligned_cols=92  Identities=21%  Similarity=0.235  Sum_probs=80.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK--IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...++||+|+||+||++... +++.||+|.+.....  ....+.+.+|+.++.+++||||+++++++...+..+|||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            56778889999999999999975 589999999865421  123467899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|...
T Consensus       265 E~~~gg~L~~~l~~~  279 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNV  279 (543)
T ss_dssp             CCCTTCBHHHHHHTS
T ss_pred             EeccCCCHHHHHHHh
Confidence            999999999999864

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.01  E-value=3.6e-10  Score=111.08  Aligned_cols=95  Identities=19%  Similarity=0.417  Sum_probs=78.0

Q ss_pred             HhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ...++|...+.||+|+||+||++.. .+++.||+|.++.... ....+.+.+|+.++++++||||+++++++...+..+|
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            4457899999999999999999985 4688999999875532 1234678899999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||++ |+|.++++...
T Consensus       111 v~e~~~-~~L~~~~~~~~  127 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKNP  127 (329)
T ss_dssp             EEECCS-EEHHHHHHHCT
T ss_pred             EEecCC-CCHHHHHhhcC
Confidence            999998 59999998653

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.01  E-value=2.1e-10  Score=113.21  Aligned_cols=91  Identities=24%  Similarity=0.363  Sum_probs=77.8

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||+||++.. ..++.||+|.+....  .....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5678889999999999999996 568899999986432  1122357899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+ +|+|.+++..+
T Consensus        89 E~~-~g~l~~~l~~~  102 (336)
T 3h4j_B           89 EYA-GGELFDYIVEK  102 (336)
T ss_dssp             CCC-CEEHHHHHHHH
T ss_pred             ECC-CCcHHHHHHHc
Confidence            999 78999998764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.01  E-value=5.9e-10  Score=107.40  Aligned_cols=91  Identities=26%  Similarity=0.441  Sum_probs=76.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|+||+||++... +++.||+|.++... .....+.+.+|+.++.+++||||+++++++...+..+||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            46778899999999999999974 57899999986543 22345778999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++ +|.+++...
T Consensus        82 ~~~~-~l~~~~~~~   94 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSC   94 (292)
T ss_dssp             CCSE-EHHHHHHHT
T ss_pred             cCCC-CHHHHHHhC
Confidence            9975 677766653

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.01  E-value=3.5e-10  Score=108.23  Aligned_cols=88  Identities=25%  Similarity=0.482  Sum_probs=75.3

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe---------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ---------  457 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~---------  457 (491)
                      ..+|...+.||+|+||.||++... +++.||+|.+....     +.+.+|+.++.+++||||+++++++..         
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            456888899999999999999975 68999999987543     346789999999999999999998854         


Q ss_pred             -------CCccEEEEeccCCCChhhhhccC
Q 011189          458 -------TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       458 -------~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                             ....++||||+++|+|.++|+..
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  114 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKR  114 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHG
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhc
Confidence                   34578999999999999999764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.01  E-value=1.5e-10  Score=118.90  Aligned_cols=93  Identities=18%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.+....  .......+.+|+.++..++||||+++++++...+..+||
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            35788889999999999999986 468899999986531  223456788999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.++|...
T Consensus       227 ~e~~~~~~L~~~l~~~  242 (446)
T 4ejn_A          227 MEYANGGELFFHLSRE  242 (446)
T ss_dssp             ECCCSSCBHHHHHHHH
T ss_pred             EeeCCCCcHHHHHHhc
Confidence            9999999999999764

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.01  E-value=4.5e-10  Score=112.03  Aligned_cols=89  Identities=26%  Similarity=0.368  Sum_probs=76.2

Q ss_pred             hhccccccceeccCCcceEEEEE------EcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC---CCccccEEeEEEe
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGV------LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN---HKNVVKILGLCLQ  457 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~------~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~  457 (491)
                      ..++|...+.||+|+||+||++.      ...++.||+|.++...    ..++.+|+.++..++   |+||+++++.+..
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN----PWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC----HHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC----hhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            34678888999999999999994      4467899999987653    356788888888886   9999999999999


Q ss_pred             CCccEEEEeccCCCChhhhhcc
Q 011189          458 TKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       458 ~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .+..+|||||+++|+|.++|+.
T Consensus       139 ~~~~~lv~e~~~~g~L~~~l~~  160 (365)
T 3e7e_A          139 QNGSVLVGELYSYGTLLNAINL  160 (365)
T ss_dssp             SSCEEEEECCCCSCBHHHHHHH
T ss_pred             CCCcEEEEeccCCCcHHHHHHH
Confidence            9999999999999999999985

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.00  E-value=6.7e-10  Score=106.86  Aligned_cols=91  Identities=23%  Similarity=0.339  Sum_probs=75.9

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCccEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVPLL  463 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~l  463 (491)
                      .|...+.||+|+||.||++... .+..||+|.+.... .....+.+.+|+.++++++||||+++++++..    ....++
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            3566678999999999999864 57789999986543 22456789999999999999999999999875    345789


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++++..
T Consensus       107 v~e~~~~~~L~~~l~~~  123 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRF  123 (290)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHc
Confidence            99999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.00  E-value=7.4e-10  Score=108.86  Aligned_cols=93  Identities=29%  Similarity=0.425  Sum_probs=79.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+.... .....+.+.+|+.++.+++||||+++++++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            357888899999999999999975 48899999886543 2234567889999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++++|.+++...
T Consensus       104 e~~~~~~l~~~~~~~  118 (331)
T 4aaa_A          104 EFVDHTILDDLELFP  118 (331)
T ss_dssp             ECCSEEHHHHHHHST
T ss_pred             ecCCcchHHHHHhhc
Confidence            999999888887654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.00  E-value=3.9e-10  Score=112.11  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             hccccccceeccCCcceEEEEEEcC-CcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD-DTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~-~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|+||+||++.... ++.||+|.++...  .....+.+.+|..++..+ +||||+++++++...+..+|
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            4678888999999999999999754 6889999987542  113456788999999988 89999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+..
T Consensus        99 v~E~~~gg~L~~~l~~~  115 (353)
T 2i0e_A           99 VMEYVNGGDLMYHIQQV  115 (353)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHhc
Confidence            99999999999999864

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.00  E-value=4.6e-10  Score=109.87  Aligned_cols=94  Identities=22%  Similarity=0.322  Sum_probs=75.0

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-------hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-------IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      ..++|...+.||+|+||.||++... +++.||||.+.....       ......+.+|+.++.+++||||+++++++...
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   87 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE   87 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence            3467888899999999999999864 578999999865321       11234588999999999999999999998655


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      + .++||||+++|+|.+++....
T Consensus        88 ~-~~lv~e~~~~~~L~~~~~~~~  109 (322)
T 2ycf_A           88 D-YYIVLELMEGGELFDKVVGNK  109 (322)
T ss_dssp             S-EEEEEECCTTEETHHHHSTTC
T ss_pred             c-eEEEEecCCCCcHHHHHhccC
Confidence            4 899999999999999998653

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.00  E-value=7.4e-10  Score=106.67  Aligned_cols=93  Identities=26%  Similarity=0.431  Sum_probs=75.6

Q ss_pred             hccccccc-eeccCCcceEEEEEEc---CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          388 TKNYDKSN-FLGEGGFGSVYRGVLS---DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       388 t~~~~~~~-~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      .++|...+ .||+|+||.||++.+.   .++.||+|.++.... ....++|.+|+.++.+++||||+++++++ ..+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            35566666 8999999999999642   357899999875432 23467899999999999999999999998 667789


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|+||+++|+|.++|+..+
T Consensus        94 lv~e~~~~~~L~~~l~~~~  112 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR  112 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT
T ss_pred             EEEEeCCCCCHHHHHHhCc
Confidence            9999999999999998753

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.00  E-value=6.4e-10  Score=107.35  Aligned_cols=94  Identities=21%  Similarity=0.345  Sum_probs=80.4

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--------hhhHHHHHHHHHHHHHcCC-CCccccEEeEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--------KIRVSQEFQHEMGIVSQIN-HKNVVKILGLCL  456 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--------~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~  456 (491)
                      ..++|...+.||+|+||.||++... +++.||+|.+....        .....+.+.+|+.++.++. ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            4567888899999999999999975 57899999986432        1123467899999999995 999999999999


Q ss_pred             eCCccEEEEeccCCCChhhhhccC
Q 011189          457 QTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       457 ~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+..++||||+++|+|.++|+.+
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~  118 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEK  118 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             cCCeEEEEEeccCCCcHHHHHhcc
Confidence            999999999999999999999864

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.00  E-value=4.8e-10  Score=107.18  Aligned_cols=89  Identities=29%  Similarity=0.496  Sum_probs=76.1

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-CccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-KVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++.. .++.||+|.++...   ..+.|.+|+.++.+++||||+++++++... +..++|+|
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   95 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   95 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh---HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEe
Confidence            45788889999999999999987 58899999987543   357799999999999999999999997654 47899999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+++|+|.++++..
T Consensus        96 ~~~~~~L~~~l~~~  109 (278)
T 1byg_A           96 YMAKGSLVDYLRSR  109 (278)
T ss_dssp             CCTTEEHHHHHHHH
T ss_pred             cCCCCCHHHHHHhc
Confidence            99999999999754

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.00  E-value=2.1e-10  Score=112.48  Aligned_cols=91  Identities=26%  Similarity=0.494  Sum_probs=74.0

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|...+.||+|+||+||++... +++    .||+|.+.........+.+.+|+.++.+++||||+++++++. .+..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            46777889999999999999864 333    388888755433233456889999999999999999999875 566889


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      |+||+++|+|.++++..
T Consensus        92 v~e~~~~~~L~~~l~~~  108 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQH  108 (325)
T ss_dssp             EEECCTTCBSHHHHHSS
T ss_pred             EEEeCCCCCHHHHHHHc
Confidence            99999999999999875

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.00  E-value=1.1e-09  Score=107.87  Aligned_cols=91  Identities=22%  Similarity=0.362  Sum_probs=78.5

Q ss_pred             HHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHc--CCCCccccEEeEEEeCC---
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ--INHKNVVKILGLCLQTK---  459 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~---  459 (491)
                      ....++|...+.||+|+||.||++.. .++.||+|.+...    ..+.+.+|++++..  ++||||+++++++...+   
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            34557889999999999999999998 6899999998653    23667889998887  79999999999998876   


Q ss_pred             -ccEEEEeccCCCChhhhhccC
Q 011189          460 -VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 -~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                       ..++||||+++|+|.++|+..
T Consensus       113 ~~~~lv~e~~~~g~L~~~l~~~  134 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYLNRY  134 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHHHHC
T ss_pred             ceeEEEEeecCCCcHHHHHhcc
Confidence             789999999999999999764

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=98.99  E-value=1.5e-10  Score=113.61  Aligned_cols=92  Identities=24%  Similarity=0.393  Sum_probs=75.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||+||++... +++.||+|.++..........+.+|+.++++++||||+++++++...+..+|||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            46778899999999999999975 68899999987654322233567899999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ |+|.+++....
T Consensus        82 ~~-~~l~~~~~~~~   94 (324)
T 3mtl_A           82 LD-KDLKQYLDDCG   94 (324)
T ss_dssp             CS-EEHHHHHHHTT
T ss_pred             cc-cCHHHHHHhcC
Confidence            97 69999988654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.99  E-value=9.9e-10  Score=118.13  Aligned_cols=94  Identities=23%  Similarity=0.426  Sum_probs=79.2

Q ss_pred             hhccccccceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ..++|...+.||+|+||+||+|.+..    +..||+|.++........+.|.+|+.++++++||||+++++++ ..+..+
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~-~~~~~~  466 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVW  466 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-CSSSCE
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-ecCceE
Confidence            34567778899999999999998642    4579999987655445568899999999999999999999988 456789


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +||||+++|+|.++|+.+.
T Consensus       467 lv~E~~~~g~L~~~l~~~~  485 (656)
T 2j0j_A          467 IIMELCTLGELRSFLQVRK  485 (656)
T ss_dssp             EEEECCTTCBHHHHHHHTT
T ss_pred             EEEEcCCCCcHHHHHHhcc
Confidence            9999999999999998653

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=98.99  E-value=1.2e-09  Score=109.08  Aligned_cols=99  Identities=22%  Similarity=0.360  Sum_probs=83.0

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-------hhHHHHHHHHHHHHHcC-CCCccccEE
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-------IRVSQEFQHEMGIVSQI-NHKNVVKIL  452 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l~~l-~H~niv~l~  452 (491)
                      .......++|...+.||+|+||+||++... +++.||||.++....       ....+.+.+|+.++.++ +||||++++
T Consensus        87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  166 (365)
T 2y7j_A           87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI  166 (365)
T ss_dssp             HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            334445577888899999999999999975 689999998765321       12246788999999999 799999999


Q ss_pred             eEEEeCCccEEEEeccCCCChhhhhccC
Q 011189          453 GLCLQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       453 g~~~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +++...+..+|||||+++|+|.+++...
T Consensus       167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~  194 (365)
T 2y7j_A          167 DSYESSSFMFLVFDLMRKGELFDYLTEK  194 (365)
T ss_dssp             EEEEBSSEEEEEECCCTTCBHHHHHHHH
T ss_pred             EEEeeCCEEEEEEEeCCCCcHHHHHHhc
Confidence            9999999999999999999999999854

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=98.99  E-value=8.3e-10  Score=106.11  Aligned_cols=94  Identities=23%  Similarity=0.408  Sum_probs=81.3

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ..++|...+.||+|+||.||++... +++.||+|.+.... .....+.+.+|+.++++++||||+++++++...+..++|
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            3467888999999999999999975 68899999986532 223457899999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      +||+++++|.+++...
T Consensus       100 ~e~~~~~~L~~~l~~~  115 (287)
T 2wei_A          100 GELYTGGELFDEIIKR  115 (287)
T ss_dssp             ECCCCSCBHHHHHHHH
T ss_pred             EEccCCCCHHHHHHhc
Confidence            9999999999988754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=98.99  E-value=3.5e-10  Score=112.54  Aligned_cols=101  Identities=23%  Similarity=0.359  Sum_probs=84.1

Q ss_pred             cHHHHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccch----------hhHHHHHHHHHHHHHcCCCCccc
Q 011189          380 SEAELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK----------IRVSQEFQHEMGIVSQINHKNVV  449 (491)
Q Consensus       380 ~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~----------~~~~~~f~~E~~~l~~l~H~niv  449 (491)
                      ...++....++|...+.||+|+||.||++...+++.||||++.....          ....+.+.+|+.++.+++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            35677888899999999999999999999987899999998854321          12247899999999999999999


Q ss_pred             cEEeEEEeCC-----ccEEEEeccCCCChhhhhccCC
Q 011189          450 KILGLCLQTK-----VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       450 ~l~g~~~~~~-----~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++++++...+     ..++||||++ |+|.+++...+
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~  128 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR  128 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc
Confidence            9999986533     4689999998 79999988653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.99  E-value=4e-10  Score=121.97  Aligned_cols=91  Identities=18%  Similarity=0.306  Sum_probs=75.7

Q ss_pred             ccccccceeccCCcceEEEEEEc--CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc-----c
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS--DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV-----P  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~--~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----~  461 (491)
                      ++|...+.||+|+||.||++...  +++.||||.+.........+.|.+|+.++.+++||||+++++++...+.     .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            56778899999999999999975  5789999998765444556789999999999999999999999987665     6


Q ss_pred             EEEEeccCCCChhhhhcc
Q 011189          462 LLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~  479 (491)
                      +|||||+++++|.+++..
T Consensus       160 ~lv~E~~~g~~L~~~~~~  177 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQ  177 (681)
T ss_dssp             EEEEECCCCEECC----C
T ss_pred             EEEEEeCCCCcHHHHHhC
Confidence            999999999999988764

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=98.99  E-value=7.7e-10  Score=118.52  Aligned_cols=86  Identities=27%  Similarity=0.449  Sum_probs=72.5

Q ss_pred             ceeccCCcceEEEEEEc---CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLS---DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      +.||+|+||.||+|.+.   .++.||||+++... .....++|.+|+.+|.+++|||||++++++. .+..+|||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence            47999999999999753   45789999987643 2234678999999999999999999999885 5568899999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|.++|+..+
T Consensus       454 g~L~~~l~~~~  464 (635)
T 4fl3_A          454 GPLNKYLQQNR  464 (635)
T ss_dssp             EEHHHHHHHCT
T ss_pred             CCHHHHHhhCC
Confidence            99999998653

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=98.99  E-value=5.4e-10  Score=107.20  Aligned_cols=92  Identities=25%  Similarity=0.459  Sum_probs=79.2

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||.||++... +++.||+|.+....  .....+.+.+|+.++++++||||+++++++...+..++||
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            57888899999999999999975 56789999986532  1123467999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.+++...
T Consensus        94 e~~~~~~L~~~l~~~  108 (284)
T 2vgo_A           94 EFAPRGELYKELQKH  108 (284)
T ss_dssp             CCCTTEEHHHHHHHH
T ss_pred             EeCCCCcHHHHHHhc
Confidence            999999999999864

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=98.99  E-value=8e-10  Score=107.54  Aligned_cols=90  Identities=28%  Similarity=0.420  Sum_probs=74.1

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..+.|...+.||+|+||.||++... +++.||+|.+....   ..+.+.+|+.++.+++||||+++++.+...+..++||
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  103 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES---DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM  103 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS---CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH---HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence            4567888899999999999999875 48899999987543   2367899999999999999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||+++|+|.++++.
T Consensus       104 e~~~~~~L~~~~~~  117 (314)
T 3com_A          104 EYCGAGSVSDIIRL  117 (314)
T ss_dssp             ECCTTEEHHHHHHH
T ss_pred             ecCCCCCHHHHHHh
Confidence            99999999999974

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=98.98  E-value=8.9e-10  Score=107.24  Aligned_cols=90  Identities=26%  Similarity=0.376  Sum_probs=71.4

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEE-----------
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL-----------  456 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~-----------  456 (491)
                      ++|...+.||+|+||.||++... .++.||+|.+..... ...+++.+|+.++++++||||+++++++.           
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDP-QSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSH-HHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCCh-HHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            56788899999999999999975 488999999876543 45678999999999999999999998873           


Q ss_pred             ---eCCccEEEEeccCCCChhhhhccC
Q 011189          457 ---QTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       457 ---~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                         .....++||||++ |+|.++++..
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~  115 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQG  115 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcC
Confidence               3357789999998 6999999753

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.98  E-value=1e-09  Score=107.88  Aligned_cols=90  Identities=21%  Similarity=0.396  Sum_probs=75.0

Q ss_pred             HhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC--CCCccccEEeEEEeC----C
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI--NHKNVVKILGLCLQT----K  459 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l--~H~niv~l~g~~~~~----~  459 (491)
                      ...++|...+.||+|+||.||++.. .++.||+|.+....    ...+.+|.+++..+  +||||+++++++...    .
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~  108 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTE----EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT  108 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred             ccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEeccc----cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence            3456889999999999999999998 48999999986543    24455666666655  899999999999887    6


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++||||+++|+|.++|+..
T Consensus       109 ~~~lv~e~~~~g~L~~~l~~~  129 (337)
T 3mdy_A          109 QLYLITDYHENGSLYDYLKST  129 (337)
T ss_dssp             EEEEEECCCTTCBHHHHHHHC
T ss_pred             ceEEEEeccCCCcHHHHhhcc
Confidence            789999999999999999764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.97  E-value=1.8e-10  Score=122.63  Aligned_cols=101  Identities=25%  Similarity=0.336  Sum_probs=82.1

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe------CCcc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ------TKVP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~~  461 (491)
                      ++|...+.||+|+||.||++.. .+++.||+|.++........+.|.+|+.++.+++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6788999999999999999986 45889999998765444566889999999999999999999998754      5678


Q ss_pred             EEEEeccCCCChhhhhccCCCCcccccc
Q 011189          462 LLVYEFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ++||||+++|+|.++++.......+++.
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~  121 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEG  121 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSS
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHH
Confidence            9999999999999999975433334443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.97  E-value=8.9e-10  Score=106.06  Aligned_cols=91  Identities=25%  Similarity=0.505  Sum_probs=75.6

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++...  ..+|+|.++... .....+.|.+|+.++++++||||++++++. ..+..++|||
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e   99 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ   99 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred             ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence            457888899999999999999853  359999986543 334567899999999999999999999954 5567899999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++++|.++++...
T Consensus       100 ~~~~~~L~~~l~~~~  114 (289)
T 3og7_A          100 WCEGSSLYHHLHASE  114 (289)
T ss_dssp             CCCEEEHHHHHTTC-
T ss_pred             ecCCCcHHHHHhhcc
Confidence            999999999997653

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=98.97  E-value=4.1e-10  Score=112.81  Aligned_cols=93  Identities=18%  Similarity=0.344  Sum_probs=70.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHH-HHcCCCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGI-VSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...+.||+|+||+||+++.+ +++.+|+|.++...  .......+.+|..+ ++.++||||+++++++...+..+|
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            357888899999999999999975 57889999986543  11234567777776 567899999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+..
T Consensus       117 v~E~~~gg~L~~~l~~~  133 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRE  133 (373)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHhc
Confidence            99999999999999864

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.97  E-value=2.7e-10  Score=111.56  Aligned_cols=96  Identities=21%  Similarity=0.428  Sum_probs=81.3

Q ss_pred             HHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEe---
Q 011189          383 ELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQ---  457 (491)
Q Consensus       383 el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~---  457 (491)
                      ++....++|...+.||+|+||.||++.. .+++.||+|.+.....  ..+.+.+|+.++.++ +||||+++++++..   
T Consensus        18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   95 (326)
T 2x7f_A           18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD--EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP   95 (326)
T ss_dssp             CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS--TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred             hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc--cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence            3444567888899999999999999996 4688999999865432  346788999999999 89999999999987   


Q ss_pred             ---CCccEEEEeccCCCChhhhhccC
Q 011189          458 ---TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       458 ---~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                         .+..++||||+++|+|.++|+..
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~  121 (326)
T 2x7f_A           96 PGMDDQLWLVMEFCGAGSVTDLIKNT  121 (326)
T ss_dssp             -CCCCEEEEEEECCTTEEHHHHHHHS
T ss_pred             ccccceEEEEEEcCCCCcHHHHHHhc
Confidence               45789999999999999999865

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=98.96  E-value=5.2e-10  Score=111.24  Aligned_cols=100  Identities=21%  Similarity=0.289  Sum_probs=83.9

Q ss_pred             ecHHHHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-----CCccccEE
Q 011189          379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-----HKNVVKIL  452 (491)
Q Consensus       379 ~~~~el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-----H~niv~l~  452 (491)
                      ++.++.....++|...+.||+|+||+||++.. .+++.||+|.++...  ...+.+.+|+.++.+++     ||||++++
T Consensus        25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK--KYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH--HHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch--hhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            33444444567899999999999999999996 467899999987533  34567888999999986     99999999


Q ss_pred             eEEEeCCccEEEEeccCCCChhhhhccCC
Q 011189          453 GLCLQTKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       453 g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +.+...+..+|||||+ +++|.+++....
T Consensus       103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~  130 (360)
T 3llt_A          103 GKFMYYDHMCLIFEPL-GPSLYEIITRNN  130 (360)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTT
T ss_pred             ceeeECCeeEEEEcCC-CCCHHHHHHhcC
Confidence            9999999999999999 899999998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=98.96  E-value=2.8e-10  Score=113.16  Aligned_cols=93  Identities=20%  Similarity=0.365  Sum_probs=78.9

Q ss_pred             hccccccceeccCCcceEEEEEE----cCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  459 (491)
                      .++|...+.||+|+||+||+++.    ..++.||||.++...   .....+.+.+|+.++.++ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            35788889999999999999986    368899999986532   112345677899999999 6999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+|||||+++|+|.++|+..
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~  153 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQR  153 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH
T ss_pred             eEEEEeecCCCCCHHHHHHHc
Confidence            999999999999999999864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=98.96  E-value=5.3e-10  Score=110.62  Aligned_cols=90  Identities=20%  Similarity=0.344  Sum_probs=76.5

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ..++|...+.||+|+||.||++... +++.+|+|.+.....     .+.+|++++.++ +||||+++++++...+..++|
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv   94 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVV   94 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEE
Confidence            3467888899999999999999875 578999999865432     234688888887 799999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|..++
T Consensus        95 ~E~~~gg~L~~~i~~~~  111 (342)
T 2qr7_A           95 TELMKGGELLDKILRQK  111 (342)
T ss_dssp             ECCCCSCBHHHHHHTCT
T ss_pred             EeCCCCCcHHHHHHHcC
Confidence            99999999999998653

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=98.96  E-value=1.1e-09  Score=105.77  Aligned_cols=92  Identities=27%  Similarity=0.464  Sum_probs=76.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|+||.||++... +++.||+|.++.... ....+.+.+|+.++++++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            46778899999999999999975 688999999865432 1234678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |++ |+|.+++....
T Consensus        83 ~~~-~~L~~~~~~~~   96 (299)
T 2r3i_A           83 FLH-QDLKKFMDASA   96 (299)
T ss_dssp             CCS-EEHHHHHHHTT
T ss_pred             ccc-CCHHHHHHhhh
Confidence            998 69999998653

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=98.96  E-value=1.6e-09  Score=106.26  Aligned_cols=87  Identities=21%  Similarity=0.457  Sum_probs=76.1

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEe--CCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQ--TKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--~~~~~lv  464 (491)
                      ++|...+.||+|+||+||++.. .+++.||+|.++...    .+.+.+|+.++.+++ ||||+++++++..  ....++|
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK----KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC----HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc----hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            5688889999999999999985 568899999987543    367889999999997 9999999999987  5678999


Q ss_pred             EeccCCCChhhhhcc
Q 011189          465 YEFVSNGTLFHHIHS  479 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~  479 (491)
                      |||+++++|.++++.
T Consensus       112 ~e~~~~~~l~~~~~~  126 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQT  126 (330)
T ss_dssp             EECCCCCCHHHHGGG
T ss_pred             EeccCchhHHHHHHh
Confidence            999999999998864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.95  E-value=1.1e-09  Score=108.16  Aligned_cols=92  Identities=14%  Similarity=0.286  Sum_probs=79.3

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCC--CccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINH--KNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv~  465 (491)
                      +.|...+.||+|+||.||++...+++.||+|.+.... .....+.|.+|+.++.+++|  +||+++++++...+..+|||
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            4677889999999999999998889999999986542 32455789999999999976  99999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      |+ .+|+|.++|+...
T Consensus        89 e~-~~~~L~~~l~~~~  103 (343)
T 3dbq_A           89 EC-GNIDLNSWLKKKK  103 (343)
T ss_dssp             CC-CSEEHHHHHHHSC
T ss_pred             eC-CCCCHHHHHHhcC
Confidence            95 5789999998753

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=98.95  E-value=3.7e-10  Score=111.43  Aligned_cols=95  Identities=27%  Similarity=0.394  Sum_probs=79.7

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-------hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-------IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      ..++|...+.||+|+||.||++.. .+++.||+|.++....       ....+.+.+|+.++.+++||||+++++++...
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            346788899999999999999985 4678999999865421       01234678899999999999999999999999


Q ss_pred             CccEEEEeccCCC-ChhhhhccCC
Q 011189          459 KVPLLVYEFVSNG-TLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~G-sL~~~L~~~~  481 (491)
                      +..++||||+..| +|.++++...
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~  125 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHP  125 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCC
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcC
Confidence            9999999999777 9999998653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=98.95  E-value=1.5e-09  Score=105.67  Aligned_cols=93  Identities=31%  Similarity=0.530  Sum_probs=73.4

Q ss_pred             hhccccccceeccCCcceEEEEEEc----CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC--
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK--  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--  459 (491)
                      ..++|...+.||+|+||.||++...    .+..||+|.++... .....+.|.+|+.++++++||||+++++++...+  
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence            3467888889999999999999864    23589999987543 2245678999999999999999999999997754  


Q ss_pred             ---ccEEEEeccCCCChhhhhcc
Q 011189          460 ---VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       460 ---~~~lv~Ey~~~GsL~~~L~~  479 (491)
                         ..++|+||+++|+|.++|..
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~l~~  134 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTYLLY  134 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHH
T ss_pred             CCcccEEEEecccCCCHHHHHHH
Confidence               35899999999999999964

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=98.94  E-value=1.3e-09  Score=107.76  Aligned_cols=95  Identities=27%  Similarity=0.461  Sum_probs=73.2

Q ss_pred             HhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchh----hHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKI----RVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ...++|...+.||+|+||.||++... +++.||+|.+......    ...+.+.+|+.++.+++||||+++++++...+.
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN   86 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence            34567888899999999999999964 5889999998753221    112468899999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++||||+++ +|.++++.+.
T Consensus        87 ~~lv~e~~~~-~l~~~~~~~~  106 (346)
T 1ua2_A           87 ISLVFDFMET-DLEVIIKDNS  106 (346)
T ss_dssp             CEEEEECCSE-EHHHHHTTCC
T ss_pred             eEEEEEcCCC-CHHHHHHhcC
Confidence            9999999985 8999988654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=98.92  E-value=1.6e-09  Score=109.10  Aligned_cols=92  Identities=14%  Similarity=0.284  Sum_probs=79.2

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCC--CCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQIN--HKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..|...+.||+|+||+||++....++.||||.+.... .....+.|.+|+.++.+++  |+||+++++++...+..+|||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            3588889999999999999998779999999986542 3345678999999999996  599999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      | +.+|+|.++|+...
T Consensus       136 E-~~~~~L~~~l~~~~  150 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK  150 (390)
T ss_dssp             E-CCSEEHHHHHHHCS
T ss_pred             e-cCCCCHHHHHHhcC
Confidence            9 56789999998754

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.92  E-value=1.4e-09  Score=106.86  Aligned_cols=92  Identities=26%  Similarity=0.583  Sum_probs=76.6

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      ++|...+.||+|+||+||++... +++    .|++|.+.........+.+.+|+.++.+++||||+++++++.... .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence            56888899999999999999864 333    468888765544345688999999999999999999999998654 789


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      |+||+++|+|.++++...
T Consensus        94 v~~~~~~g~L~~~l~~~~  111 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHK  111 (327)
T ss_dssp             EECCCSSCBHHHHHHHTT
T ss_pred             EEEecCCCcHHHHHHhcC
Confidence            999999999999998754

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=98.91  E-value=1.7e-09  Score=107.04  Aligned_cols=92  Identities=22%  Similarity=0.384  Sum_probs=78.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----Ccc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  461 (491)
                      .++|...+.||+|+||.||++... +++.||||.+...........+.+|+.++++++||||+++++++...     ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            457888899999999999999975 58899999997655545567899999999999999999999988654     578


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++|+||++ |+|.+++...
T Consensus        90 ~lv~e~~~-~~L~~~~~~~  107 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQ  107 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHC
T ss_pred             EEEEeccC-ccHHHHHhhc
Confidence            99999997 6999988763

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.91  E-value=8.7e-10  Score=108.15  Aligned_cols=90  Identities=20%  Similarity=0.313  Sum_probs=75.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeC-------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQT-------  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~-------  458 (491)
                      ..+|...+.||+|+||.||++... +++.||+|.+..... ...+.+.+|+.++.++. ||||+++++++...       
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEE-EKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSH-HHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCch-HHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            346788899999999999999964 688999999865543 45678999999999996 99999999999532       


Q ss_pred             -CccEEEEeccCCCChhhhhcc
Q 011189          459 -KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 -~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                       ...++|+||++ |+|.++|+.
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~  126 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKK  126 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHH
T ss_pred             CceEEEEEEecC-CCHHHHHHH
Confidence             24789999996 799999876

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.91  E-value=1.9e-09  Score=103.51  Aligned_cols=91  Identities=26%  Similarity=0.461  Sum_probs=68.9

Q ss_pred             ccccccceeccCCcceEEEEEEc--CCc--EEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS--DDT--QVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~--~~~--~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...+.||+|+||+||++.+.  +++  .||+|.++...  .....+.|.+|+.++.+++||||+++++++.... .+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   96 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence            56888899999999999999863  233  68999987542  2245678999999999999999999999987654 88


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|+||+++|+|.++++..
T Consensus        97 ~v~e~~~~~~L~~~l~~~  114 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKH  114 (291)
T ss_dssp             EEEECCTTCBHHHHHHHH
T ss_pred             eeEecccCCCHHHHHHhc
Confidence            999999999999999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=98.91  E-value=1.6e-09  Score=108.31  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=71.1

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|++... ......+.+.+|+.++++++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            35688889999999999999986 46889999998543 23244578999999999999999999999987653      


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+|||||+ +++|.++++..
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~  123 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHE  123 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC
T ss_pred             eEEEEEecC-CCCHHHHHhcC
Confidence            459999999 78999999764

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=98.90  E-value=1.3e-09  Score=106.99  Aligned_cols=88  Identities=17%  Similarity=0.216  Sum_probs=76.3

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|+||+||++.. .+++.||+|.+.....   .+.+.+|+.++.++ +|+||++++++....+..+||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR---APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS---SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc---hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            5678889999999999999995 5688999999865432   24588999999999 99999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+ +|+|.++++..
T Consensus        86 ~~-~~~L~~~~~~~   98 (330)
T 2izr_A           86 LL-GPSLEDLFDLC   98 (330)
T ss_dssp             CC-CCBHHHHHHHT
T ss_pred             eC-CCCHHHHHHHc
Confidence            99 99999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.90  E-value=1.3e-09  Score=106.99  Aligned_cols=96  Identities=19%  Similarity=0.277  Sum_probs=79.7

Q ss_pred             HHhhcccccc-ceeccCCcceEEEEEEc-CCcEEEEEeccccch-hhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          385 IKATKNYDKS-NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       385 ~~~t~~~~~~-~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      +...+.|... +.||+|+||.||++... +++.||+|.+..... .....++.+|+.++..+ +||||+++++++...+.
T Consensus        24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~  103 (327)
T 3lm5_A           24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE  103 (327)
T ss_dssp             HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe
Confidence            3344556555 78999999999999865 588999999875432 23457899999999999 56999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++||||+++|+|.+++...
T Consensus       104 ~~lv~e~~~~~~L~~~~~~~  123 (327)
T 3lm5_A          104 IILILEYAAGGEIFSLCLPE  123 (327)
T ss_dssp             EEEEEECCTTEEGGGGGSSC
T ss_pred             EEEEEEecCCCcHHHHHHHh
Confidence            99999999999999999764

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=98.90  E-value=1.6e-09  Score=110.62  Aligned_cols=92  Identities=18%  Similarity=0.352  Sum_probs=78.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----Cc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  460 (491)
                      .++|...+.||+|+||.||++... .++.||||++.... .....+.+.+|+.++++++|+||+++++++...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            467888899999999999999864 57889999987542 224557899999999999999999999998765     56


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .+|||||++ |+|.++++..
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~  123 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTP  123 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSS
T ss_pred             EEEEEecCC-cCHHHHHhcc
Confidence            899999997 6999999865

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.90  E-value=3.2e-09  Score=101.83  Aligned_cols=91  Identities=13%  Similarity=0.138  Sum_probs=72.7

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhH-HHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRV-SQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||+||++.. .+++.||+|.++....... .+.+.++...++.++||||+++++++...+..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            46788889999999999999996 4688999999876533233 344555556688889999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||++ |+|.++++.
T Consensus        86 e~~~-~~l~~~l~~   98 (290)
T 3fme_A           86 ELMD-TSLDKFYKQ   98 (290)
T ss_dssp             ECCS-EEHHHHHHH
T ss_pred             ehhc-cchHHHHHH
Confidence            9997 589888764

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=98.89  E-value=1.4e-09  Score=111.89  Aligned_cols=92  Identities=21%  Similarity=0.411  Sum_probs=68.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----Cc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  460 (491)
                      .++|...+.||+|+||+||++... +++.||||++... ......+.+.+|+.+|++++|||||++++++...     ..
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            357888899999999999999854 6889999998653 2324567899999999999999999999998543     46


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .+|||||+. |+|.++++..
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~  150 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTP  150 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSS
T ss_pred             EEEEEeccc-cchhhhcccC
Confidence            899999985 7999999865

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=98.88  E-value=2.1e-09  Score=107.18  Aligned_cols=92  Identities=21%  Similarity=0.383  Sum_probs=78.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----Ccc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  461 (491)
                      ..+|...+.||+|+||.||++... +++.||+|++.........+.+.+|+.++.+++||||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            457888899999999999999864 67889999997655445567899999999999999999999998654     367


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++|+||++ |+|.++++..
T Consensus       106 ~iv~e~~~-~~L~~~l~~~  123 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQ  123 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHC
T ss_pred             EEEEcccC-cCHHHHHHhC
Confidence            89999997 6999998764

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.88  E-value=1.6e-09  Score=106.65  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=73.1

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-------hhhHHHHHHHHHHHHHcCC---------CCccccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-------KIRVSQEFQHEMGIVSQIN---------HKNVVKI  451 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-------~~~~~~~f~~E~~~l~~l~---------H~niv~l  451 (491)
                      .++|...+.||+|+||+||+++. +++.||||.+....       .....+.+.+|+.++++++         |+|||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35677889999999999999997 78999999987542       1123477889999998885         8888888


Q ss_pred             EeEEE------------------------------eCCccEEEEeccCCCChhhhhcc
Q 011189          452 LGLCL------------------------------QTKVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       452 ~g~~~------------------------------~~~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .+...                              ..+..+|||||+++|+|.+.+.+
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~  155 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT  155 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh
Confidence            88754                              15688999999999987777754

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.88  E-value=3.8e-09  Score=103.43  Aligned_cols=91  Identities=14%  Similarity=0.252  Sum_probs=74.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHH-HHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMG-IVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||.||++... +++.||+|.++.........++.+|+. +++.++||||+++++++...+..++||
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            356778889999999999999974 688999999876544344556667776 677789999999999999999999999


Q ss_pred             eccCCCChhhhhcc
Q 011189          466 EFVSNGTLFHHIHS  479 (491)
Q Consensus       466 Ey~~~GsL~~~L~~  479 (491)
                      ||++ |+|.+++..
T Consensus       101 e~~~-~~l~~~~~~  113 (327)
T 3aln_A          101 ELMS-TSFDKFYKY  113 (327)
T ss_dssp             CCCS-EEHHHHHHH
T ss_pred             eecC-CChHHHHHH
Confidence            9998 488888763

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=98.88  E-value=3.4e-09  Score=102.51  Aligned_cols=92  Identities=22%  Similarity=0.348  Sum_probs=74.2

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch---hhHHHHHHHHHHHHHcCCCCccccEEeEEE--eCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK---IRVSQEFQHEMGIVSQINHKNVVKILGLCL--QTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~--~~~~~  461 (491)
                      .++|...+.||+|+||.||++.. .+++.+|+|.+.....   ....+.+.+|+.++++++||||+++++++.  ..+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            46788899999999999999986 4578999999875421   134577999999999999999999999985  34578


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ++||||+++| |.+++...
T Consensus        84 ~lv~e~~~~~-l~~~~~~~  101 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSV  101 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHS
T ss_pred             EEEehhccCC-HHHHHHhC
Confidence            9999999876 77777754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=98.87  E-value=3.4e-09  Score=106.60  Aligned_cols=93  Identities=25%  Similarity=0.428  Sum_probs=70.3

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCC--cc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTK--VP  461 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~--~~  461 (491)
                      ..++|...+.||+|+||.||++.. ..++.||+|++... ......+.+.+|+.++.++. ||||+++++++...+  ..
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            356788889999999999999985 46889999998643 22245677889999999997 999999999998654  67


Q ss_pred             EEEEeccCCCChhhhhccC
Q 011189          462 LLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +|||||++ |+|.++++..
T Consensus        87 ~lv~e~~~-~~L~~~~~~~  104 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRAN  104 (388)
T ss_dssp             EEEEECCS-EEHHHHHHHT
T ss_pred             EEEecccC-cCHHHHHHcC
Confidence            99999998 6999998864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=98.85  E-value=3e-09  Score=109.73  Aligned_cols=91  Identities=25%  Similarity=0.327  Sum_probs=74.4

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      .++|...+.||+|+||+||++... .++.||||++.... .....+.+.+|+.+++.++||||+++++++...+      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            467888899999999999999854 57899999986542 2244678999999999999999999999997653      


Q ss_pred             ccEEEEeccCCCChhhhhcc
Q 011189          460 VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ..+|||||+++ +|.+.++.
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~  159 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQM  159 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTS
T ss_pred             eEEEEEeCCCC-CHHHHHhh
Confidence            46999999975 57776654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.85  E-value=5.3e-09  Score=102.71  Aligned_cols=89  Identities=30%  Similarity=0.465  Sum_probs=70.2

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHH--HcCCCCccccEEeEEEeC-----Cc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIV--SQINHKNVVKILGLCLQT-----KV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l--~~l~H~niv~l~g~~~~~-----~~  460 (491)
                      .++|...+.||+|+||.||+++. +++.||+|.+....    .+.+..|.+++  ..++|+||+++++.....     ..
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   86 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME   86 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc----hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence            35788889999999999999987 78999999987543    24455555554  458999999999876531     25


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||+++|+|.++|+...
T Consensus        87 ~~lv~e~~~~g~L~~~l~~~~  107 (336)
T 3g2f_A           87 YLLVMEYYPNGSLXKYLSLHT  107 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHCC
T ss_pred             EEEEEecCCCCcHHHHHhhcc
Confidence            689999999999999997654

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.85  E-value=2.7e-09  Score=107.90  Aligned_cols=87  Identities=22%  Similarity=0.352  Sum_probs=69.8

Q ss_pred             cccccc-ceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHH-cCCCCccccEEeEEEe----CCcc
Q 011189          389 KNYDKS-NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVS-QINHKNVVKILGLCLQ----TKVP  461 (491)
Q Consensus       389 ~~~~~~-~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~----~~~~  461 (491)
                      ++|... ++||+|+||+||++... +++.||+|.++..      ..+.+|+.++. ..+||||+++++++..    .+..
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            345444 68999999999999864 5789999998642      34667888764 4589999999999865    4568


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|||||+++|+|.++|+...
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~  154 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRG  154 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC-
T ss_pred             EEEEEeCCCCcHHHHHHHhC
Confidence            99999999999999998753

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.85  E-value=4.5e-09  Score=101.61  Aligned_cols=87  Identities=22%  Similarity=0.362  Sum_probs=72.0

Q ss_pred             cccccc-ceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHH-HcCCCCccccEEeEEEe----CCcc
Q 011189          389 KNYDKS-NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIV-SQINHKNVVKILGLCLQ----TKVP  461 (491)
Q Consensus       389 ~~~~~~-~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~----~~~~  461 (491)
                      ++|... +.||+|+||.||++.. .+++.||+|.++..      ..+.+|+.++ +.++||||+++++++..    ....
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   90 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   90 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence            445554 6799999999999986 46889999998643      3466888887 56699999999999876    5678


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|||||+++|+|.++++...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~  110 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDRG  110 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHCT
T ss_pred             EEEEeecCCCcHHHHHHhcc
Confidence            99999999999999998754

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=98.84  E-value=2.7e-09  Score=107.11  Aligned_cols=89  Identities=26%  Similarity=0.401  Sum_probs=70.0

Q ss_pred             HHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----  458 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----  458 (491)
                      +...++|...+.||+|+||+||++.. .+++.||+|++.....     ...+|+.+++.++||||+++++++...     
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-----SCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-----hHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            34567888999999999999999986 5689999999865432     123799999999999999999998543     


Q ss_pred             ---------------------------------CccEEEEeccCCCChhhhhcc
Q 011189          459 ---------------------------------KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 ---------------------------------~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                                                       ...+|||||++ |+|.+.|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~  130 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKS  130 (383)
T ss_dssp             --------------------------------CCEEEEEECCCS-EEHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHH
Confidence                                             23789999998 588887764

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.84  E-value=5.4e-09  Score=103.45  Aligned_cols=93  Identities=24%  Similarity=0.413  Sum_probs=76.1

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-------  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-------  458 (491)
                      .++|...+.||+|+||+||++.. .+++.||+|++..... ......+.+|+.++.+++||||+++++++...       
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            35788889999999999999997 4688999998865432 12346788999999999999999999999874       


Q ss_pred             -CccEEEEeccCCCChhhhhccCC
Q 011189          459 -KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 -~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                       +..+|||||++ |+|.+.+....
T Consensus        96 ~~~~~lv~e~~~-~~l~~~l~~~~  118 (351)
T 3mi9_A           96 KGSIYLVFDFCE-HDLAGLLSNVL  118 (351)
T ss_dssp             -CEEEEEEECCS-EEHHHHHHCTT
T ss_pred             CceEEEEEeccC-CCHHHHHhhcc
Confidence             45789999998 48888877653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.83  E-value=2.4e-09  Score=115.47  Aligned_cols=93  Identities=20%  Similarity=0.213  Sum_probs=79.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|...++||+|+||+||++... +++.||||.++...  .....+.+.+|..++..+ +|++|+++++++...+..+|
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l  419 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF  419 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence            467888899999999999999965 57889999987532  113456788999999988 79999999999999999999


Q ss_pred             EEeccCCCChhhhhccC
Q 011189          464 VYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~  480 (491)
                      ||||+++|+|.++|+..
T Consensus       420 V~E~~~gg~L~~~l~~~  436 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQV  436 (674)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEeCcCCCcHHHHHHhc
Confidence            99999999999999864

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.83  E-value=4.5e-09  Score=107.46  Aligned_cols=86  Identities=20%  Similarity=0.169  Sum_probs=72.2

Q ss_pred             ccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEeccC
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEFVS  469 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  469 (491)
                      |...+.||+|+||+||.....+++.||||++....    .+.+.+|+.++.++ +|||||++++.....+..+|||||++
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~----~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF----CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG----HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH----HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence            34457899999999987666689999999986532    35678999999886 89999999999999999999999996


Q ss_pred             CCChhhhhccCC
Q 011189          470 NGTLFHHIHSKS  481 (491)
Q Consensus       470 ~GsL~~~L~~~~  481 (491)
                       |+|.++|+...
T Consensus        93 -gsL~~~l~~~~  103 (434)
T 2rio_A           93 -LNLQDLVESKN  103 (434)
T ss_dssp             -EEHHHHHHTC-
T ss_pred             -CCHHHHHhccC
Confidence             69999998754

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=98.82  E-value=5.6e-09  Score=104.35  Aligned_cols=91  Identities=23%  Similarity=0.314  Sum_probs=75.6

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      .++|...+.||+|+||.||++... .++.||+|++.... .....+.+.+|+.+++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            357888899999999999999854 57899999986532 2245577999999999999999999999997654      


Q ss_pred             ccEEEEeccCCCChhhhhcc
Q 011189          460 VPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~  479 (491)
                      ..++||||++ |+|.++++.
T Consensus       104 ~~~lv~e~~~-~~l~~~~~~  122 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQM  122 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHHS
T ss_pred             ceEEEEEcCC-CCHHHHHhh
Confidence            6799999997 578888864

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.82  E-value=5.5e-09  Score=101.63  Aligned_cols=94  Identities=14%  Similarity=0.273  Sum_probs=80.3

Q ss_pred             hhccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCC--CCccccEEeEEEeCCccEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQIN--HKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~l  463 (491)
                      ..++|...+.||+|+||.||++...+++.||+|.+.... .....+.+.+|+.++.+++  |+||+++++++...+..++
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l  105 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  105 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence            345788889999999999999998889999999986542 2245678999999999997  5999999999999999999


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||| +.+++|.++|+...
T Consensus       106 v~e-~~~~~L~~~l~~~~  122 (313)
T 3cek_A          106 VME-CGNIDLNSWLKKKK  122 (313)
T ss_dssp             EEC-CCSEEHHHHHHHCS
T ss_pred             EEe-cCCCcHHHHHHhcC
Confidence            999 56789999998653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.81  E-value=3e-09  Score=106.06  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=72.6

Q ss_pred             hccccccceeccCCcceEEEEEEcC------CcEEEEEeccccchhh----------HHHHHHHHHHHHHcCCCCccccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD------DTQVAVKKPKEADKIR----------VSQEFQHEMGIVSQINHKNVVKI  451 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~------~~~vavK~l~~~~~~~----------~~~~f~~E~~~l~~l~H~niv~l  451 (491)
                      .++|...+.||+|+||.||++....      ++.||+|.+.......          ....+.+|+..+..++|+||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4578888999999999999998754      4689999986543211          01235667777888999999999


Q ss_pred             EeEEEeC----CccEEEEeccCCCChhhhhccCC
Q 011189          452 LGLCLQT----KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       452 ~g~~~~~----~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ++++...    ...+|||||+ +|+|.++++...
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~  146 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA  146 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc
Confidence            9998765    3579999999 999999998753

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.80  E-value=4.3e-09  Score=105.09  Aligned_cols=92  Identities=22%  Similarity=0.360  Sum_probs=68.7

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------C
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA-DKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------K  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  459 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|++... ......+.+.+|+.++++++||||+++++++...      .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            36788889999999999999985 46889999998653 2224567899999999999999999999998654      4


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..++|+||+ +++|.++++..
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~~  127 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKCQ  127 (367)
T ss_dssp             CCEEEEECC-CEECC-----C
T ss_pred             eEEEEeccc-CCCHHHHHhcC
Confidence            679999999 68999988753

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.80  E-value=8.5e-10  Score=107.57  Aligned_cols=94  Identities=21%  Similarity=0.401  Sum_probs=79.0

Q ss_pred             HhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ...++|...+.||+|+||.||++....  .+|+|.+.... .....+.|.+|+.++.+++|+||+++++++...+..++|
T Consensus        30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv  107 (319)
T 2y4i_B           30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII  107 (319)
T ss_dssp             SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred             CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence            345678888999999999999998743  48999886542 112345688999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      +||+++++|.++|+..+
T Consensus       108 ~e~~~~~~L~~~l~~~~  124 (319)
T 2y4i_B          108 TSLCKGRTLYSVVRDAK  124 (319)
T ss_dssp             CBCCCSEEHHHHTTSSC
T ss_pred             eecccCCcHHHHHHhcC
Confidence            99999999999998754

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.80  E-value=6.3e-09  Score=103.97  Aligned_cols=91  Identities=22%  Similarity=0.341  Sum_probs=75.9

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc----
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP----  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~----  461 (491)
                      .++|...+.||+|+||+||++... +++.||+|++.... .....+.+.+|+.+++.++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            356778889999999999999864 68899999987542 223457899999999999999999999999876654    


Q ss_pred             --EEEEeccCCCChhhhhcc
Q 011189          462 --LLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       462 --~lv~Ey~~~GsL~~~L~~  479 (491)
                        ++||||++ |+|.+++..
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~  139 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGM  139 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTS
T ss_pred             eEEEEEcccc-ccHHHHhhc
Confidence              99999997 689888754

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.79  E-value=1.9e-09  Score=107.97  Aligned_cols=92  Identities=11%  Similarity=0.148  Sum_probs=72.3

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEecccc--chhhHHHHHHHHH---HHHHcCCCCccccEE-------eE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEA--DKIRVSQEFQHEM---GIVSQINHKNVVKIL-------GL  454 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~  454 (491)
                      .++|...+.||+|+||+||++.. .+++.||||.+...  ......+.|.+|+   .++++++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            45677789999999999999995 56899999998643  1223567899999   556666899999998       55


Q ss_pred             EEeCC-----------------ccEEEEeccCCCChhhhhccC
Q 011189          455 CLQTK-----------------VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       455 ~~~~~-----------------~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      +...+                 ..+|||||+ +|+|.++|+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~  193 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL  193 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc
Confidence            54443                 278999999 68999999863

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.79  E-value=3e-09  Score=105.17  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             ccccccceeccCCcceEEEEEEc----CCcEEEEEeccccchhh----------HHHHHHHHHHHHHcCCCCccccEEeE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS----DDTQVAVKKPKEADKIR----------VSQEFQHEMGIVSQINHKNVVKILGL  454 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~----~~~~vavK~l~~~~~~~----------~~~~f~~E~~~l~~l~H~niv~l~g~  454 (491)
                      ++|...+.||+|+||+||++...    .+..+|+|.+.......          ....+.+|+.++..++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56888899999999999999975    46789999886543210          11347789999999999999999999


Q ss_pred             EEe----CCccEEEEeccCCCChhhhhccCC
Q 011189          455 CLQ----TKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       455 ~~~----~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..    ....+|||||+ +++|.++++..+
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~  146 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG  146 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC
Confidence            988    67889999999 999999998653

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.79  E-value=4.5e-09  Score=107.35  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .+|...+.||+|+||+|+.....+++.||||++.....    ..+.+|+.+++++ +|||||++++.+...+..+|||||
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~   99 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL   99 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence            45777889999999997655556889999999865432    2356899999999 799999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      ++ |+|.+++....
T Consensus       100 ~~-g~L~~~l~~~~  112 (432)
T 3p23_A          100 CA-ATLQEYVEQKD  112 (432)
T ss_dssp             CS-EEHHHHHHSSS
T ss_pred             CC-CCHHHHHHhcC
Confidence            96 69999998754

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.79  E-value=8.1e-09  Score=99.42  Aligned_cols=90  Identities=17%  Similarity=0.286  Sum_probs=77.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||.||++.. .+++.||+|.+.....   .+.+.+|+.++..+ +|+|+++++++.......++||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD---APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT---SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc---cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            35688889999999999999995 5788999998865432   24578899999999 7999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+ +++|.++++...
T Consensus        86 e~~-~~~L~~~l~~~~  100 (298)
T 1csn_A           86 DLL-GPSLEDLLDLCG  100 (298)
T ss_dssp             ECC-CCBHHHHHHHTT
T ss_pred             Eec-CCCHHHHHHHhc
Confidence            999 999999998653

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.79  E-value=7.5e-09  Score=102.56  Aligned_cols=90  Identities=22%  Similarity=0.337  Sum_probs=75.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc------
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV------  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  460 (491)
                      ++|...+.||+|+||.||++... +++.||+|.+.... .....+.+.+|+.++++++||||+++++++...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            56777889999999999999864 68899999986542 22345789999999999999999999999987654      


Q ss_pred             cEEEEeccCCCChhhhhcc
Q 011189          461 PLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .++||||++ |+|.+++..
T Consensus       104 ~~lv~e~~~-~~l~~~~~~  121 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIMGL  121 (353)
T ss_dssp             CEEEEECCS-EEGGGTTTS
T ss_pred             EEEEecccc-CCHHHHhcC
Confidence            499999997 689888754

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.78  E-value=8.1e-09  Score=100.17  Aligned_cols=94  Identities=23%  Similarity=0.422  Sum_probs=72.5

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch----hhHHHHHHHHHHHHHcC---CCCccccEEeEEEeC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK----IRVSQEFQHEMGIVSQI---NHKNVVKILGLCLQT  458 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~----~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~  458 (491)
                      ..++|...+.||+|+||+||++.. .+++.||+|.++....    ......+.+|+.+++.+   +||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            356888899999999999999995 4688999999864321    01124566777777766   499999999999876


Q ss_pred             C-----ccEEEEeccCCCChhhhhccCC
Q 011189          459 K-----VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~-----~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .     ..++||||++ |+|.++++...
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~  113 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAP  113 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhcc
Confidence            5     4789999997 69999998764

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.77  E-value=2e-09  Score=104.72  Aligned_cols=98  Identities=27%  Similarity=0.390  Sum_probs=70.9

Q ss_pred             HHHHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchh-----hHHHHHHHHHHHHHcC----CCCccccEE
Q 011189          383 ELIKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKI-----RVSQEFQHEMGIVSQI----NHKNVVKIL  452 (491)
Q Consensus       383 el~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l~~l----~H~niv~l~  452 (491)
                      +.....++|...+.||+|+||.||++.. .+++.||+|.+......     .....+.+|+.++.++    +|+||++++
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            3344567899999999999999999985 46789999998654321     1234467899999988    899999999


Q ss_pred             eEEEeCCccEEEEec-cCCCChhhhhccC
Q 011189          453 GLCLQTKVPLLVYEF-VSNGTLFHHIHSK  480 (491)
Q Consensus       453 g~~~~~~~~~lv~Ey-~~~GsL~~~L~~~  480 (491)
                      +++...+..++|+|| +++++|.++|..+
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~  133 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITEK  133 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHHH
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHhc
Confidence            999998999999999 8999999999864

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.77  E-value=8e-09  Score=104.51  Aligned_cols=86  Identities=22%  Similarity=0.439  Sum_probs=65.8

Q ss_pred             cccc-cceeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccEE
Q 011189          390 NYDK-SNFLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPLL  463 (491)
Q Consensus       390 ~~~~-~~~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~l  463 (491)
                      .|.. .++||+|+||+||++...   .++.||+|.+.....   ...+.+|+.++++++||||+++++++..  ....+|
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l   97 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI---SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL   97 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC---CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC---CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence            3443 457999999999999975   467899999975432   2568899999999999999999999965  557899


Q ss_pred             EEeccCCCChhhhhcc
Q 011189          464 VYEFVSNGTLFHHIHS  479 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~  479 (491)
                      ||||++ |+|.+++..
T Consensus        98 v~e~~~-~~l~~~~~~  112 (405)
T 3rgf_A           98 LFDYAE-HDLWHIIKF  112 (405)
T ss_dssp             EEECCS-EEHHHHHHH
T ss_pred             EEeCCC-CCHHHHHHH
Confidence            999997 588888863

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.76  E-value=7.1e-09  Score=102.85  Aligned_cols=94  Identities=21%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      .+.....++|...+.||+|+||+||++... +++.||||++.....  ....+.+|+..+..++||||+++++++...+.
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~   93 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR--FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE   93 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT--CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc--ccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence            455667789999999999999999999974 588999998865432  23456788888999999999999999976443


Q ss_pred             -------cEEEEeccCCCChhhhhc
Q 011189          461 -------PLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       461 -------~~lv~Ey~~~GsL~~~L~  478 (491)
                             .++||||+++ +|.+.+.
T Consensus        94 ~~~~~~~~~lv~e~~~~-~l~~~~~  117 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPD-TLHRCCR  117 (360)
T ss_dssp             SCTTCEEEEEEEECCSC-BHHHHHH
T ss_pred             ccccceeEEEEeecccc-cHHHHHH
Confidence                   7899999985 5555444

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.76  E-value=1.2e-08  Score=104.04  Aligned_cols=91  Identities=22%  Similarity=0.376  Sum_probs=76.5

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcC------CCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI------NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l------~H~niv~l~g~~~~~~~  460 (491)
                      ..+|...+.||+|+||+||++... .++.||||.++...  ...+.+.+|+.++..+      +|+||+++++.+...+.
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  173 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK--RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH  173 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc--chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence            356888899999999999999864 57899999997643  2446678888888776      57899999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||+. |+|.+++....
T Consensus       174 ~~lv~e~~~-~~L~~~l~~~~  193 (429)
T 3kvw_A          174 ICMTFELLS-MNLYELIKKNK  193 (429)
T ss_dssp             EEEEECCCC-CBHHHHHHHTT
T ss_pred             EEEEEeccC-CCHHHHHHhcc
Confidence            999999996 69999998764

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.76  E-value=5.2e-09  Score=102.23  Aligned_cols=94  Identities=22%  Similarity=0.409  Sum_probs=73.9

Q ss_pred             hhccccccceeccCCcceEEEEEE--cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcC---CCCccccEEeEEE----
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL--SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQI---NHKNVVKILGLCL----  456 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~--~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~----  456 (491)
                      ..++|...+.||+|+||.||++..  .+++.||+|.++.... ......+.+|+.+++.+   +||||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            456788899999999999999997  3578999999864322 11224566777777666   8999999999987    


Q ss_pred             -eCCccEEEEeccCCCChhhhhccCC
Q 011189          457 -QTKVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       457 -~~~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                       .....++|+||++ |+|.++++...
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~  113 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVP  113 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSC
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhcc
Confidence             3457889999998 69999998653

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.75  E-value=3.2e-09  Score=105.29  Aligned_cols=85  Identities=13%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             ccccccceeccCCcceEEEEEEcC---------CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCcccc---------
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD---------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK---------  450 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~---------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~---------  450 (491)
                      ++|...+.||+|+||.||++....         ++.||+|.+...      +.+.+|+.++.+++||||++         
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            578888999999999999999753         788999998654      35789999999999999988         


Q ss_pred             ------EEeEEEe-CCccEEEEeccCCCChhhhhccC
Q 011189          451 ------ILGLCLQ-TKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       451 ------l~g~~~~-~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                            ++++... .+..+|||||+ +|+|.++|+..
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~  151 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS  151 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC
Confidence                  6777776 67889999999 99999999865

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.74  E-value=1.1e-08  Score=100.16  Aligned_cols=90  Identities=24%  Similarity=0.411  Sum_probs=76.8

Q ss_pred             ccccccceeccCCcceEEEEEE--cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCC------ccccEEeEEEeCCc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL--SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK------NVVKILGLCLQTKV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~--~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~------niv~l~g~~~~~~~  460 (491)
                      ++|...+.||+|+||+||++..  .+++.||+|.++...  ...+.+.+|+.++..++|+      +++++++++...+.
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~   91 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD--RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH   91 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH--HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC--chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence            5788889999999999999986  357899999987543  3457788999999988765      49999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||+ +++|.+++....
T Consensus        92 ~~lv~e~~-~~~l~~~l~~~~  111 (339)
T 1z57_A           92 ICIVFELL-GLSTYDFIKENG  111 (339)
T ss_dssp             EEEEEECC-CCBHHHHHHHTT
T ss_pred             EEEEEcCC-CCCHHHHHHhcC
Confidence            99999999 899999998764

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.72  E-value=1.8e-08  Score=99.23  Aligned_cols=89  Identities=25%  Similarity=0.315  Sum_probs=68.5

Q ss_pred             hcccccc-ceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCcc
Q 011189          388 TKNYDKS-NFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVP  461 (491)
Q Consensus       388 t~~~~~~-~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~  461 (491)
                      .++|... ++||+|+||+||++... +++.||+|.+.....  ..++   ....+..++||||+++++++..    ....
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~e---~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  101 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK--ARQE---VDHHWQASGGPHIVCILDVYENMHHGKRCL  101 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH--HHHH---HHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH--HHHH---HHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence            4567774 46999999999999975 688999999865322  2222   2233566799999999999876    3457


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|||||+++|+|.++|+...
T Consensus       102 ~lv~e~~~gg~L~~~l~~~~  121 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQERG  121 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-
T ss_pred             EEEEeccCCCCHHHHHHhcC
Confidence            89999999999999998764

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.71  E-value=9.7e-09  Score=103.13  Aligned_cols=89  Identities=21%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC--------CCccccEEeEEE---
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN--------HKNVVKILGLCL---  456 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~--------H~niv~l~g~~~---  456 (491)
                      ++|...+.||+|+||+||++.. .+++.||+|.++...  ...+.+.+|+.++..++        |+||+++++.+.   
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE--HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC--cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            5688889999999999999985 457899999987543  34577899999999885        788999999987   


Q ss_pred             -eCCccEEEEeccCCCChhhhhccC
Q 011189          457 -QTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       457 -~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                       .....+|||||+ +|+|.+++...
T Consensus       115 ~~~~~~~lv~e~~-~~~l~~~~~~~  138 (397)
T 1wak_A          115 VNGTHICMVFEVL-GHHLLKWIIKS  138 (397)
T ss_dssp             TTEEEEEEEECCC-CCBHHHHHHHT
T ss_pred             CCCceEEEEEecc-CccHHHHHHhc
Confidence             345789999999 56777777654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.69  E-value=1.8e-08  Score=105.75  Aligned_cols=85  Identities=9%  Similarity=0.110  Sum_probs=63.4

Q ss_pred             cceeccCCcceEEEEEEcCCcEEEEEeccccc-------hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          394 SNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-------KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-------~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++||+|+||+||++.. .++.+++|+.....       .....+.|.+|++++++++||||+++..+....+..+||||
T Consensus       341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE  419 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMS  419 (540)
T ss_dssp             -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEE
T ss_pred             CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEE
Confidence            46899999999999965 67888898754321       11124568999999999999999977777778888899999


Q ss_pred             ccCCCChhhhhcc
Q 011189          467 FVSNGTLFHHIHS  479 (491)
Q Consensus       467 y~~~GsL~~~L~~  479 (491)
                      |+++|+|.++|+.
T Consensus       420 ~~~ggsL~~~l~~  432 (540)
T 3en9_A          420 YINGKLAKDVIED  432 (540)
T ss_dssp             CCCSEEHHHHSTT
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999875

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.69  E-value=1e-08  Score=103.33  Aligned_cols=83  Identities=25%  Similarity=0.449  Sum_probs=66.2

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc------cE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV------PL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------~~  462 (491)
                      .+|...+.||+|+||.||++....+..+|+|++.....     ...+|+.+++.++||||+++++++...+.      .+
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            46778899999999999999987777799998765432     12379999999999999999999865443      77


Q ss_pred             EEEeccCCCChhhhh
Q 011189          463 LVYEFVSNGTLFHHI  477 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L  477 (491)
                      |||||++++ |.+.+
T Consensus       115 lv~e~~~~~-l~~~~  128 (394)
T 4e7w_A          115 LVLEYVPET-VYRAS  128 (394)
T ss_dssp             EEEECCSEE-HHHHH
T ss_pred             EEeeccCcc-HHHHH
Confidence            999999864 44433

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.69  E-value=3.3e-08  Score=96.03  Aligned_cols=90  Identities=11%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHH-HHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVS-QEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~-~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||.||++... +++.||+|.+......... +.+.++..++..++||||+++++++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            456777889999999999999975 6889999998765432333 44455556788889999999999999999999999


Q ss_pred             eccCCCChhhhhc
Q 011189          466 EFVSNGTLFHHIH  478 (491)
Q Consensus       466 Ey~~~GsL~~~L~  478 (491)
                      ||+ ++.+..++.
T Consensus       104 e~~-~~~~~~l~~  115 (318)
T 2dyl_A          104 ELM-GTCAEKLKK  115 (318)
T ss_dssp             CCC-SEEHHHHHH
T ss_pred             ecc-CCcHHHHHH
Confidence            999 444544443

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.68  E-value=2.8e-08  Score=99.22  Aligned_cols=90  Identities=10%  Similarity=-0.073  Sum_probs=61.3

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHH---HHHHcCCCCccccEE-------eEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEM---GIVSQINHKNVVKIL-------GLC  455 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~~  455 (491)
                      ..|...+.||+|+||.||++... +++.||+|.+....  .....+.+.+|+   .+|+. +||||++++       +..
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence            45777889999999999999964 68899999987654  223456677884   55555 799988754       444


Q ss_pred             EeCC-----------------ccEEEEeccCCCChhhhhccC
Q 011189          456 LQTK-----------------VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       456 ~~~~-----------------~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ...+                 ..+|||||++ |+|.++|+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~  181 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL  181 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence            4332                 3799999999 8999999864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.64  E-value=2.9e-08  Score=100.89  Aligned_cols=84  Identities=25%  Similarity=0.468  Sum_probs=66.8

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------cc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------VP  461 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~  461 (491)
                      .+|...+.||+|+||.||++... .++.||||++.....     .+.+|+.++++++|+|||++++++....      ..
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~  128 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL  128 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch-----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence            35777789999999999999975 589999999865422     2347999999999999999999986421      36


Q ss_pred             EEEEeccCCCChhhhhc
Q 011189          462 LLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~  478 (491)
                      +|||||+++ +|.+.++
T Consensus       129 ~lv~e~~~~-~l~~~~~  144 (420)
T 1j1b_A          129 NLVLDYVPE-TVYRVAR  144 (420)
T ss_dssp             EEEEECCCE-EHHHHHH
T ss_pred             Eeehhcccc-cHHHHHH
Confidence            699999985 6766655

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.62  E-value=8.7e-09  Score=100.72  Aligned_cols=96  Identities=25%  Similarity=0.421  Sum_probs=78.4

Q ss_pred             HHhhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchh-----hHHHHHHHHHHHHHcCC--CCccccEEeEEE
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKI-----RVSQEFQHEMGIVSQIN--HKNVVKILGLCL  456 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l~~l~--H~niv~l~g~~~  456 (491)
                      ....++|...+.||+|+||.||++.. .+++.||+|.+......     ...+.+.+|+.++.+++  |+||+++++++.
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~  118 (320)
T 3a99_A           39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE  118 (320)
T ss_dssp             -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence            34456788899999999999999985 46789999998654211     12245778999999996  599999999999


Q ss_pred             eCCccEEEEeccCC-CChhhhhccC
Q 011189          457 QTKVPLLVYEFVSN-GTLFHHIHSK  480 (491)
Q Consensus       457 ~~~~~~lv~Ey~~~-GsL~~~L~~~  480 (491)
                      ..+..++|+|++.+ ++|.+++..+
T Consensus       119 ~~~~~~lv~e~~~~~~~L~~~l~~~  143 (320)
T 3a99_A          119 RPDSFVLILERPEPVQDLFDFITER  143 (320)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHHH
T ss_pred             cCCcEEEEEEcCCCCccHHHHHhcc
Confidence            99999999999976 8999999864

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.61  E-value=4.9e-08  Score=93.80  Aligned_cols=89  Identities=19%  Similarity=0.296  Sum_probs=73.2

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEE-EeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC-LQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lv~  465 (491)
                      .++|...+.||+|+||+||++.. .+++.||+|.+.....   .+++.+|+.++..++|++++..+..+ ...+..++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS---CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc---hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence            46788889999999999999996 5788999999765432   24588999999999988877666555 5667889999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+ +++|.++++..
T Consensus        85 e~~-~~~L~~~~~~~   98 (296)
T 3uzp_A           85 ELL-GPSLEDLFNFC   98 (296)
T ss_dssp             ECC-CCBHHHHHHHT
T ss_pred             Eec-CCCHHHHHHhh
Confidence            999 89999999854

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.60  E-value=4.8e-08  Score=93.81  Aligned_cols=90  Identities=19%  Similarity=0.293  Sum_probs=70.1

Q ss_pred             hhccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEE-EeCCccEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC-LQTKVPLLV  464 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lv  464 (491)
                      ..++|...+.||+|+||+||++.. ..++.||+|.+.....   .+.+.+|+.++..++|++++..+..+ ...+..++|
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc---chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence            456788899999999999999995 5688999998654422   24578899999999988877766655 567788999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+ +|+|.++++..
T Consensus        84 ~e~~-~~~L~~~~~~~   98 (296)
T 4hgt_A           84 MELL-GPSLEDLFNFC   98 (296)
T ss_dssp             EECC-CCBHHHHHHHT
T ss_pred             EEcc-CCCHHHHHHHh
Confidence            9999 99999999854

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.60  E-value=4.6e-08  Score=98.09  Aligned_cols=92  Identities=22%  Similarity=0.361  Sum_probs=76.6

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CC-----ccccEEeEEEeCC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HK-----NVVKILGLCLQTK  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~-----niv~l~g~~~~~~  459 (491)
                      ..++|...+.||+|+||+||++... +++.||||.++...  ...+++.+|+.++..++ |+     +|+++++.+...+
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK--AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH--HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH--HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            4568888899999999999999864 57889999997543  34567788998888874 44     4999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccCC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..+|||||++ |+|.++|+...
T Consensus       130 ~~~lv~e~~~-~~L~~~l~~~~  150 (382)
T 2vx3_A          130 HLCLVFEMLS-YNLYDLLRNTN  150 (382)
T ss_dssp             EEEEEEECCC-CBHHHHHHHTT
T ss_pred             ceEEEEecCC-CCHHHHHhhcC
Confidence            9999999996 59999998754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.59  E-value=3.3e-08  Score=98.39  Aligned_cols=90  Identities=20%  Similarity=0.313  Sum_probs=75.5

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-----------CCccccEEeEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-----------HKNVVKILGLCL  456 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~  456 (491)
                      ++|...+.||+|+||+||++.. .+++.||+|.+....  ...+.+.+|+.++.+++           |+||+++++.+.
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc--cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            4688889999999999999986 468899999987543  24567889999998886           899999999987


Q ss_pred             eCC----ccEEEEeccCCCChhhhhccCC
Q 011189          457 QTK----VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       457 ~~~----~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..+    ..++||||+ +++|.+++....
T Consensus        97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~  124 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVL-GENLLALIKKYE  124 (373)
T ss_dssp             EEETTEEEEEEEECCC-CEEHHHHHHHTT
T ss_pred             ccCCCCceEEEEEecC-CCCHHHHHHHhh
Confidence            654    688999999 899999998643

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.55  E-value=1e-07  Score=98.53  Aligned_cols=89  Identities=17%  Similarity=0.276  Sum_probs=73.0

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC-CccccEEeEEEeCCccEEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH-KNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~  465 (491)
                      .++|...++||+|+||.||++.. .+++.||||.+.....   .+++.+|+.++..++| +++..+..+....+..+|||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvm   82 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK---HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVM   82 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS---SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc---cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEE
Confidence            35788889999999999999996 5688999998765432   2357899999999987 55666666777788899999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+ +++|.++++..
T Consensus        83 e~~-g~sL~~ll~~~   96 (483)
T 3sv0_A           83 DLL-GPSLEDLFNFC   96 (483)
T ss_dssp             ECC-CCBHHHHHHHT
T ss_pred             ECC-CCCHHHHHHhh
Confidence            999 99999999854

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.54  E-value=1.2e-07  Score=91.02  Aligned_cols=89  Identities=12%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             HHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchh-----------------hHHHHHHHHHHHHHcCCCCc
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKI-----------------RVSQEFQHEMGIVSQINHKN  447 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~-----------------~~~~~f~~E~~~l~~l~H~n  447 (491)
                      ......|...+.||+|+||.||++...+++.||+|.++.....                 .....+.+|+.++.+++  |
T Consensus        86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~  163 (282)
T 1zar_A           86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G  163 (282)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T
T ss_pred             HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C
Confidence            3334455566899999999999999877899999998643210                 13567999999999999  4


Q ss_pred             cccEEeEEEeCCccEEEEeccCCCChhhhhc
Q 011189          448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       448 iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  478 (491)
                       +++.++.. .+..++||||+++|+|.+ +.
T Consensus       164 -~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~  191 (282)
T 1zar_A          164 -LAVPKVYA-WEGNAVLMELIDAKELYR-VR  191 (282)
T ss_dssp             -SSSCCEEE-EETTEEEEECCCCEEGGG-CC
T ss_pred             -CCcCeEEe-ccceEEEEEecCCCcHHH-cc
Confidence             56655443 356799999999999998 53

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.54  E-value=9.5e-08  Score=94.18  Aligned_cols=91  Identities=20%  Similarity=0.330  Sum_probs=75.1

Q ss_pred             hccccccceeccCCcceEEEEEEc-CC-cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCc------cccEEeEEEeCC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DD-TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN------VVKILGLCLQTK  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~-~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~  459 (491)
                      .++|...+.||+|+||+||++... .+ +.||+|.++...  ...+.+.+|+.++.+++|++      ++.+.+++...+
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG--KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc--cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            357888899999999999999864 33 689999987543  34577889999999987765      899999999999


Q ss_pred             ccEEEEeccCCCChhhhhccCC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..+|||||+ +++|.+++....
T Consensus        96 ~~~lv~e~~-~~~l~~~l~~~~  116 (355)
T 2eu9_A           96 HMCIAFELL-GKNTFEFLKENN  116 (355)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT
T ss_pred             eEEEEEecc-CCChHHHHHhcc
Confidence            999999999 678888887653

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.40  E-value=6.5e-08  Score=74.95  Aligned_cols=67  Identities=34%  Similarity=0.905  Sum_probs=52.9

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCC--CcccCccccccCCCCcc-CcCcCCCCCccccCCCCCCCCCc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYL--GCHDIDECKEKERYHCE-GTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~--gC~~~~~C~~~~~~~c~-~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .|. ++.|.+..  ++|+|.|++||+++++.  .|.+++||... ...|. +.|.|+.|+|.|.|+.||.++..
T Consensus        12 ~C~-~g~C~n~~--g~y~C~C~~Gy~~~~~~g~~C~dideC~~~-~~~C~~~~C~n~~g~y~C~C~~G~~~~~~   81 (86)
T 1lmj_A           12 LCG-RGQCVNTP--GDFECKCDEGYESGFMMMKNCMDIDECQRD-PLLCRGGVCHNTEGSYRCECPPGHQLSPN   81 (86)
T ss_dssp             TTT-TSCEEEET--TEEEECCCSSEEECTTTSSSEEECCHHHHC-SSTTTTSEEEEETTEEEEESCTTSCCCSS
T ss_pred             CCC-CCEEECCC--CCEEeeCCCCcCccCCCCCccCCcccccCC-CCcCCCCEeEcCCCCEEEECcCCcccCCC
Confidence            464 45898765  48999999999987653  79999999642 23464 79999999999999999987643

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.39  E-value=7e-08  Score=77.94  Aligned_cols=62  Identities=39%  Similarity=0.814  Sum_probs=22.6

Q ss_pred             CeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCCc
Q 011189          257 TNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       257 ~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      ..|.+..  ++|+|.|++||+|++-..|++++||..  ...|.+.|.|+.|+|.|.|+.||.++..
T Consensus        41 ~~C~n~~--g~y~C~C~~Gy~g~~g~~C~dideC~~--~~~C~~~C~n~~gsy~C~C~~Gy~~~~d  102 (107)
T 2w2n_E           41 YVCNDLK--IGYECLCPDGFQLVAQRRCEDIDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDPH  102 (107)
T ss_dssp             SEEECCS--BSCEEECCTTCEEETTTEEEC------------------------------------
T ss_pred             CEeEeCC--CCeEEECCCCccccCCCccccccccCC--CCCcCCeeecCCCCEEEECCCCceECCC
Confidence            3687644  489999999999976568999999974  2468899999999999999999987643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.35  E-value=3.6e-07  Score=96.37  Aligned_cols=85  Identities=14%  Similarity=-0.020  Sum_probs=62.1

Q ss_pred             eccCCcceEEEEE-EcCCcEEEEEeccccc---------hhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEEE
Q 011189          397 LGEGGFGSVYRGV-LSDDTQVAVKKPKEAD---------KIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       397 lG~G~fG~V~~g~-~~~~~~vavK~l~~~~---------~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      .+.|+.|.+.+.. +--|+.+++|.+....         .....++|.+|+++|+++ .|+||++++++..+.+..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            4556666555433 2357889999875431         123457799999999999 7999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||++||+|.++|++.+
T Consensus       322 Eyv~G~~L~d~i~~~~  337 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGE  337 (569)
T ss_dssp             ECCCSEEHHHHHHTTC
T ss_pred             ecCCCCcHHHHHHhCC
Confidence            9999999999998764

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.34  E-value=1.3e-07  Score=73.34  Aligned_cols=60  Identities=37%  Similarity=0.842  Sum_probs=49.4

Q ss_pred             CCCCCeeecCCCCCCeeeeeCCCCccCCCC-CcccCccccccCCCCccCcCcCCCCCccccCC--CCCC
Q 011189          253 CGDNTNCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDECKEKERYHCEGTCKNTFGNYTCDCP--IGMH  318 (491)
Q Consensus       253 C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~--~g~~  318 (491)
                      | .++.|.+..  ++|+|.|++||++++.. .|.+++||..   .+|.+.|.|+.|+|.|.|+  .|+.
T Consensus        13 C-~~~~C~n~~--g~y~C~C~~G~~~~~~g~~C~dideC~~---~~C~~~C~n~~g~y~C~C~g~~G~~   75 (87)
T 1z6c_A           13 C-GTAVCKNIP--GDFECECPEGYRYNLKSKSCEDIDECSE---NMCAQLCVNYPGGYTCYCDGKKGFK   75 (87)
T ss_dssp             B-TTSSCCCBT--TBCCCSSSTTCEEETTTTEEECCCHHHH---SCCSSEECCCSSSCCEECCSSSCCB
T ss_pred             C-CCCEeECCC--CCEEEECCCCceECCCCCcCCCcCeeCC---CCCCCEEEccCCCEEEECCCCcCCc
Confidence            6 567887654  48999999999988765 8999999953   4688999999999999996  4544

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.27  E-value=8.1e-07  Score=67.97  Aligned_cols=65  Identities=34%  Similarity=0.780  Sum_probs=51.4

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc-cCcCcCCCCCccccCCCCCCCCCc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .|. ++.|.+..  ++|+|.|++||.++. ..|.+++||...  .+| .+.|.|+.|+|.|.|+.||.++..
T Consensus        13 ~C~-~g~C~n~~--g~y~C~C~~Gy~~~g-~~C~dideC~~~--~~C~~~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A           13 VCK-HGQCINTD--GSYRCECPFGYILAG-NECVDTDECSVG--NPCGNGTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             SCS-SSEECCCS--SCCCEECCTTEEEET-TEEEECCGGGTC--CTTSSSCEEECSSSEEECCSSSSCCCSS
T ss_pred             CcC-CCEEEecC--CCEEEECCCCeECCC-CccCCcccccCC--CCCCCCEeECCCCCEEeECCCCeEeCCC
Confidence            464 57887654  589999999998643 269999999642  356 479999999999999999988754

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.12  E-value=1.2e-06  Score=74.70  Aligned_cols=72  Identities=33%  Similarity=0.839  Sum_probs=57.3

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCC---------CCcccCccccccCCCCcc--CcCcCCCCCccccCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPY---------LGCHDIDECKEKERYHCE--GTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~---------~gC~~~~~C~~~~~~~c~--~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|..++.|.+..  ++|+|.|++||.|++.         ..|.+++||.. ....|.  +.|.|+.|+|.|.|+.||.++
T Consensus        54 ~C~~~~~C~n~~--g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~-~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~  130 (143)
T 2bou_A           54 SCGKFSDCWNTE--GSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS-GQHQCDSSTVCFNTVGSYSCRCRPGWKPR  130 (143)
T ss_dssp             CCCTTEEEEECS--SCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHH-TCCCCCTTSEEEECSSCEEEECCSSSCBC
T ss_pred             CCCCCCEEEcCC--CCeEeECCCCcccCcCccccccCCCCCcCCccCccC-cCCCCCCCCEEECCCCCEEeeCCCCcccC
Confidence            577778998755  4899999999999854         27999999964 234564  799999999999999999987


Q ss_pred             Ccc-ccc
Q 011189          321 GKV-SCQ  326 (491)
Q Consensus       321 ~~~-~c~  326 (491)
                      ... .|.
T Consensus       131 ~~~~~C~  137 (143)
T 2bou_A          131 HGIPNNQ  137 (143)
T ss_dssp             TTCCSSB
T ss_pred             CCCccCc
Confidence            543 454

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.11  E-value=3.6e-06  Score=84.80  Aligned_cols=67  Identities=37%  Similarity=0.836  Sum_probs=54.0

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCCcc-ccc
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKV-SCQ  326 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~~~-~c~  326 (491)
                      ...|.+..  ++|.|.|++||++..-..|.+++||..  ...|...|.|+.|+|.|.|+.||..+... .|.
T Consensus        11 ~~~C~~~~--~~y~C~C~~G~~~~~~~~C~dideC~~--~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~   78 (400)
T 3p5b_L           11 SHVCNDLK--IGYECLCPDGFQLVAQRRCEDIDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK   78 (400)
T ss_dssp             SSEEEECS--SSEEEECCTTEEECSSSCEEECCCCST--TSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCC
T ss_pred             CCEeECCC--CCeEEECCCCCCcCCCCcccCchhhhc--cCCCCCccCCCccceeeecccccccccccccee
Confidence            35788755  489999999999844458999999974  35788899999999999999999876443 453

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.05  E-value=4.1e-06  Score=71.62  Aligned_cols=63  Identities=24%  Similarity=0.632  Sum_probs=52.4

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcC-cCCCCCccccCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTC-KNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C-~n~~g~~~C~C~~g~~~~  320 (491)
                      .|..++.|.+..  ++|+|.|++||.|.   .|.++++|.. ....|...| .|+.|+|.|.|+.||...
T Consensus        55 pC~n~g~C~~~~--~~y~C~C~~G~~G~---~C~~~deC~~-~~~~C~~~C~~n~~g~y~C~C~~Gy~l~  118 (146)
T 1x7a_L           55 PCLNGGLCKDDI--NSYECWCQVGFEGK---NCELDATCNI-KNGRCKQFCKTGADSKVLCSCTTGYRLA  118 (146)
T ss_dssp             SSCTTCEEEECS--SCEEEECCSSEEST---TTCEECCTTS-GGGSCSSBCCCCSSSCCCCBCCTTEEEC
T ss_pred             CCCCCCEeECCC--CCEEEecCCCCcCC---cCCCCccccC-CCCCCcCCCCCCCCCCEEeEcCCCcEeC
Confidence            588889998765  47999999999985   5888899964 234687799 999999999999999843

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.02  E-value=3.7e-06  Score=81.88  Aligned_cols=65  Identities=32%  Similarity=0.782  Sum_probs=53.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcc-cCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCH-DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~-~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|..++.|.+..  .+|+|.|++||.|+   .|. +++||.......|...|.|+.++|.|.|+.||.++.
T Consensus        12 pC~~~g~C~~~~--~~~~C~C~~g~~g~---~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~   77 (317)
T 3h5c_B           12 PCLHNGSCQDSI--WGYTCTCSPGYEGS---NCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGE   77 (317)
T ss_dssp             CCTTTCCCCCCS--SSCCCCCSSSCCSS---SSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCT
T ss_pred             CCCCCCEeECCC--CCeEEECCCCCcCC---ccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccc
Confidence            577788897654  58999999999987   487 899996533467877999999999999999998753

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=97.88  E-value=1.4e-05  Score=75.38  Aligned_cols=84  Identities=17%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             ccccceeccCCcceEEEEEE-cCCcE--EEEEeccccchh-----------------------hHHHHHHHHHHHHHcCC
Q 011189          391 YDKSNFLGEGGFGSVYRGVL-SDDTQ--VAVKKPKEADKI-----------------------RVSQEFQHEMGIVSQIN  444 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~-~~~~~--vavK~l~~~~~~-----------------------~~~~~f~~E~~~l~~l~  444 (491)
                      |...+.||+|+||.||++.. .+++.  ||||.++.....                       .....+.+|+.++..++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999997 67888  999986543110                       11246889999999998


Q ss_pred             CCcc--ccEEeEEEeCCccEEEEeccCC-C----Chhhhhc
Q 011189          445 HKNV--VKILGLCLQTKVPLLVYEFVSN-G----TLFHHIH  478 (491)
Q Consensus       445 H~ni--v~l~g~~~~~~~~~lv~Ey~~~-G----sL~~~L~  478 (491)
                      |+++  ..++..    +..+|||||+.+ |    +|.+++.
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~  165 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGR  165 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGG
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhh
Confidence            8764  344432    367899999942 4    6666544

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=97.88  E-value=2.7e-06  Score=70.01  Aligned_cols=60  Identities=32%  Similarity=0.697  Sum_probs=49.9

Q ss_pred             CeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          257 TNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       257 ~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      ..|.+ .  ++|+|.|++||++++-..|.+++||...  .+|.+.|.|+.++|.|.|+.||.++.
T Consensus        53 ~~C~~-~--~~y~C~C~~Gy~~~~g~~C~dideC~~~--~~C~~~C~n~~g~y~C~C~~G~~g~~  112 (118)
T 1dx5_I           53 ADCDP-N--TQASCECPEGYILDDGFICTDIDECENG--GFCSGVCHNLPGTFECICGPDSALAG  112 (118)
T ss_dssp             CEECT-T--STTCEECCTTEEEETTTEEEECCHHHHC--SSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred             CcccC-C--CCeEeECCCCccCCCCCccccccccCCC--CCCcCeEEeCCCCEEEECCCCCccCC
Confidence            56765 2  5899999999998764479999999752  46889999999999999999998754

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.86  E-value=5.2e-06  Score=67.81  Aligned_cols=64  Identities=22%  Similarity=0.572  Sum_probs=50.0

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCc---cccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDID---ECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~---~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|..++.|.+..  ++|+|.|++||.|+.   |.++.   +|.. ....|...|.|+.++|.|.|+.||.+..
T Consensus        21 ~C~~~g~C~~~~--~~y~C~C~~G~~G~~---C~~~~~~~~C~~-~~~~C~~~C~n~~g~y~C~C~~G~~~~~   87 (114)
T 1aut_L           21 LCCGHGTCIDGI--GSFSCDCRSGWEGRF---CQREVSFLNCSL-DNGGCTHYCLEEVGWRRCSCAPGYKLGD   87 (114)
T ss_dssp             TTTTSEEECCCS--SCCCEEECTTEESTT---SCEECCSSSSSS-GGGGCSSEEEECSSSEEEECCTTEEECT
T ss_pred             cCCCcCCCCCCC--CCcEeeCCCCCcCCC---cCcCCcCCcCcC-CCCCCCCEeECCCCCEEeECCCCeeECC
Confidence            377788897654  589999999999985   76643   5753 2345777999999999999999998643

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=97.82  E-value=4.4e-06  Score=71.21  Aligned_cols=64  Identities=33%  Similarity=0.766  Sum_probs=50.9

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCC------CCcccCccccccCCCCcc--CcCcCCCCCccccCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPY------LGCHDIDECKEKERYHCE--GTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~------~gC~~~~~C~~~~~~~c~--~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|..++.|.+     .|+|.|++||+|+..      ..|.+++||.......|.  +.|.++.++|.|.|+.||.+.
T Consensus         8 ~C~~~~~C~~-----~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~   79 (143)
T 2bou_A            8 WCPQDSSCVN-----ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPV   79 (143)
T ss_dssp             TCCTTEEESS-----SSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEET
T ss_pred             cCCCCCEEcC-----CCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccC
Confidence            5777889975     389999999999742      379999999764434674  799999999999999999876

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.69  E-value=6.2e-06  Score=81.97  Aligned_cols=86  Identities=10%  Similarity=0.044  Sum_probs=54.6

Q ss_pred             ccccceeccCCcceEEEEEEcCCcEEEEEeccccch-------------hhHHHH--------HHHHHHHHHcCCCCccc
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK-------------IRVSQE--------FQHEMGIVSQINHKNVV  449 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~-------------~~~~~~--------f~~E~~~l~~l~H~niv  449 (491)
                      |...+.||+|++|.||++...+|+.||||.++....             ......        ..+|...|.++.+..+.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            677889999999999999988899999998653210             001112        23455555555443332


Q ss_pred             cEEeEEEeCCccEEEEeccCCCChhhhhc
Q 011189          450 KILGLCLQTKVPLLVYEFVSNGTLFHHIH  478 (491)
Q Consensus       450 ~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  478 (491)
                      -..-+..  ...+|||||+++++|.+++.
T Consensus       177 vp~p~~~--~~~~LVME~i~G~~L~~l~~  203 (397)
T 4gyi_A          177 VPEPIAQ--SRHTIVMSLVDALPMRQVSS  203 (397)
T ss_dssp             CCCEEEE--ETTEEEEECCSCEEGGGCCC
T ss_pred             CCeeeec--cCceEEEEecCCccHhhhcc
Confidence            1111111  23479999999988877654

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.65  E-value=6.4e-06  Score=73.56  Aligned_cols=62  Identities=24%  Similarity=0.665  Sum_probs=25.8

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCccc-C-ccccccCCCCccCcCcCCCCCccccCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHD-I-DECKEKERYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~-~-~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      .|..++.|.+..  ++|+|.|++||.|..   |.+ + ++|.. ....|...|.++.|+|.|.|+.||..
T Consensus        49 pC~ngg~C~n~~--g~y~C~C~~Gf~G~~---Ce~~i~deC~~-~~~~C~~~C~n~~gsy~C~C~~Gy~l  112 (195)
T 1nfu_B           49 PCQNQGKCKDGL--GEYTCTCLEGFEGKN---CELFTRKLCSL-DNGDCDQFCHEEQNSVVCSCARGYTL  112 (195)
T ss_dssp             -------------------------------------CCGGGT-GGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred             CCCCCCEeECCC--CCeeEeCCCCceecc---ccccccccccC-CCCCCCCEeECCCCCeEEECCCCcee
Confidence            577778897654  489999999999864   876 5 78964 34568779999999999999999984

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.63  E-value=1e-05  Score=81.07  Aligned_cols=59  Identities=27%  Similarity=0.684  Sum_probs=16.5

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|.+.  .++|+|.|++||+.++.. .|.+++||.  ....|...|.|+.|+|.|.|+.||...
T Consensus        16 ~C~~~--~g~~~C~C~~G~~l~~~~~~C~d~~eC~--~~~~C~~~C~~~~g~~~C~C~~g~~l~   75 (386)
T 3v65_B           16 KCQMI--RGAVQCTCHTGYRLTEDGRTCQDVNECA--EEGYCSQGCTNSEGAFQCWCEAGYELR   75 (386)
T ss_dssp             ----------------------------------------CCTTEEC-----CCEECCTTEEEC
T ss_pred             CCcCC--CCCcEeECCCCceECCCCCccCccceeC--CcCcccCcCCCCCCCCeEEECCCceEc
Confidence            57432  246999999999977665 899999996  345788889999999999999999743

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.61  E-value=2.9e-05  Score=65.95  Aligned_cols=63  Identities=29%  Similarity=0.705  Sum_probs=48.5

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCccc-Ccccc--ccCCCCccCcCcCCCC-CccccCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHD-IDECK--EKERYHCEGTCKNTFG-NYTCDCPIGMHG  319 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~-~~~C~--~~~~~~c~~~C~n~~g-~~~C~C~~g~~~  319 (491)
                      .|..++.|.+..  ++|+|.|++||.|..   |.+ +++|.  ......|...|.++.+ +|.|.|+.||..
T Consensus        54 pC~n~g~C~~~~--g~y~C~C~~G~~G~~---C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l  120 (142)
T 2c4f_L           54 PCQNGGSCKDQL--QSYICFCLPAFEGRN---CETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSL  120 (142)
T ss_dssp             CCCTTCEEEEET--TEEEEECCTTEESTT---SCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEE
T ss_pred             CcCCCCEEeCCC--CCEEeeCCCCccCCc---cccCccccccccCCCCCccCEeECCCCCCEEEECCCCceE
Confidence            587788998765  489999999999864   765 46652  2223456668999999 999999999983

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.59  E-value=4.2e-05  Score=77.24  Aligned_cols=58  Identities=9%  Similarity=0.106  Sum_probs=45.4

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchh--hHHHHHHHHHHHHHcCCC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKI--RVSQEFQHEMGIVSQINH  445 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l~~l~H  445 (491)
                      ...|...+.||+|+||+||++.. .+++.||||.+......  ...+.|.+|+.++..++|
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence            34566778999999999999995 46899999998743321  235779999999999987

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.58  E-value=5.2e-05  Score=64.41  Aligned_cols=67  Identities=36%  Similarity=0.854  Sum_probs=51.0

Q ss_pred             CCCCCCeeecCC-----CCCCeeeeeCCCCccCCCCCcc-cCccccccCCCCccCcCcCCCCCccccCCCCCCCCCc
Q 011189          252 RCGDNTNCDYSE-----NGEGYRCLCKPGFQGNPYLGCH-DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       252 ~C~~~~~C~~~~-----~~~g~~C~C~~G~~gn~~~gC~-~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .|..++.|....     ..++|+|.|++||.|.   .|. ++++|.. ......+.|.++.++|.|.|+.||.++..
T Consensus        59 ~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~---~C~~~i~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~G~~c  131 (143)
T 4d90_A           59 PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQHNINECEV-EPCKNGGICTDLVANYSCECPGEFMGRNC  131 (143)
T ss_dssp             CCCTTCEEEECCCEETTEECCEEEECCTTEEST---TSCEECCTTTT-CCSCTTCEEEEETTEEEEECCTTCBSTTS
T ss_pred             CCCCCCEecCCCccccCCCCCeEeECcCCCcCC---CcccCCCcCCC-CCCCCCCEeECCCCCeEeECCCCCccCCc
Confidence            577778887432     1258999999999876   476 8899963 22233679999999999999999998854

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=97.54  E-value=5.3e-05  Score=79.45  Aligned_cols=67  Identities=31%  Similarity=0.713  Sum_probs=53.7

Q ss_pred             CCCCCCeeecCCCCCCeee-eeCCCCccCCCCCcccCccccccCCCCcc--C---cCcCCCCCcccc-CCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRC-LCKPGFQGNPYLGCHDIDECKEKERYHCE--G---TCKNTFGNYTCD-CPIGMHGDG  321 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C-~C~~G~~gn~~~gC~~~~~C~~~~~~~c~--~---~C~n~~g~~~C~-C~~g~~~~~  321 (491)
                      .|..++.|.+... +.|+| .|++||+|+.. -|.+++||.. ....|.  +   .|.|+.++|.|. |+.||.+..
T Consensus        10 PC~~gg~C~n~~~-Gsy~C~~C~~GytGdg~-~CeDiDEC~~-~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~   83 (634)
T 1yo8_A           10 PCFPGAQCSSFPD-GSWSCGFCPVGFLGNGT-HCEDLDECAL-VPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ   83 (634)
T ss_dssp             CSCTTCCEEECTT-SCEEECCCCTTBCSCSS-SCCBCCTTTT-SCCCSCCCSSSCCEEECSSSEEECCCCTTEEECC
T ss_pred             CCCCCCEEecCCC-CCeECCcCCCccCCCCC-CccccccccC-CCCcccCCccccceeeccCceecccCCCCcccCc
Confidence            5888889987653 24999 99999999865 4999999964 333473  3   899999999998 999998764

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=97.51  E-value=1.3e-05  Score=71.64  Aligned_cols=68  Identities=22%  Similarity=0.527  Sum_probs=53.9

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccC-CCCcc--CcCcCCC-----CCccccCCCCCCCCCc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKE-RYHCE--GTCKNTF-----GNYTCDCPIGMHGDGK  322 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~-~~~c~--~~C~n~~-----g~~~C~C~~g~~~~~~  322 (491)
                      .|. |+.|.+..  ++|+|.|++||.|+....|.++++|.... ..+|.  +.|.++.     ++|.|.|+.||.++..
T Consensus        12 pC~-ng~C~~~~--g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~   87 (186)
T 1z1y_A           12 ICX-NGQLVQMS--NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED   87 (186)
T ss_dssp             CCB-TEEEEECS--SCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETT
T ss_pred             CCC-CCEeECCC--CCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCC
Confidence            566 56898755  47999999999998555799999997421 35673  7899998     8999999999987643

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=97.50  E-value=4e-05  Score=80.42  Aligned_cols=67  Identities=33%  Similarity=0.845  Sum_probs=54.2

Q ss_pred             CCCCCC---eeecCCCCCCeeee-eCCCCccCCCC------------CcccCccccccCCCCcc--CcCcCCC----CCc
Q 011189          252 RCGDNT---NCDYSENGEGYRCL-CKPGFQGNPYL------------GCHDIDECKEKERYHCE--GTCKNTF----GNY  309 (491)
Q Consensus       252 ~C~~~~---~C~~~~~~~g~~C~-C~~G~~gn~~~------------gC~~~~~C~~~~~~~c~--~~C~n~~----g~~  309 (491)
                      .|..++   .|.+..  ++|+|. |++||.|+.+.            .|.+++||... ...|.  +.|.++.    ++|
T Consensus        53 ~C~~gg~~~~CvNt~--gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~-~~pC~~~~~Cvnt~~~~~GsY  129 (634)
T 1yo8_A           53 ICFSTSKVPRCVNTQ--PGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK-THNCHKHAECIYLGHFSDPMY  129 (634)
T ss_dssp             CSCCCSSSCCEEECS--SSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTT-CCCCCTTEEEEECCTTCSSSE
T ss_pred             cccCCccccceeecc--CceecccCCCCcccCccccccccccccCCCcccccccccCC-CcccccCccccccccccccce
Confidence            488777   898754  489999 99999998764            49999999642 34674  7899988    999


Q ss_pred             cccCCCCCCCCC
Q 011189          310 TCDCPIGMHGDG  321 (491)
Q Consensus       310 ~C~C~~g~~~~~  321 (491)
                      .|.|+.||.+++
T Consensus       130 ~C~C~~Gy~GdG  141 (634)
T 1yo8_A          130 KCECQTGYAGDG  141 (634)
T ss_dssp             EEEECTTEEESS
T ss_pred             eeeccCCccccC
Confidence            999999998854

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.47  E-value=7.1e-05  Score=62.94  Aligned_cols=63  Identities=29%  Similarity=0.794  Sum_probs=50.1

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCCCc-ccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGC-HDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC-~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      ..|..++.|.+..  ++|+|.|++||.|+.   | .++++|..   .+|  .+.|.++.++|.|.|+.||.+..
T Consensus        13 ~~C~~~g~C~~~~--g~~~C~C~~Gy~G~~---C~~~~~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~G~~   78 (135)
T 2vj3_A           13 NPCEHAGKCINTL--GSFECQCLQGYTGPR---CEIDVNECVS---NPCQNDATCLDQIGEFQCICMPGYEGVH   78 (135)
T ss_dssp             CSSSTTCEEEECS--SSEEEECCTTEESTT---SCEECCTTTT---CCCCSSCEEEECSSCEEEECCTTEESSS
T ss_pred             CCCCCCCEeECCC--CCEEEECCCCCcCCc---ccccCccCCC---CCCCCCCEEeCCCCCceeeCCCCCcCCc
Confidence            3688888998754  479999999999873   6 47888854   244  57899999999999999998753

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.46  E-value=1.5e-05  Score=66.99  Aligned_cols=62  Identities=24%  Similarity=0.672  Sum_probs=25.4

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCccc-C-ccccccCCCCccCcCcCCCCCccccCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHD-I-DECKEKERYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~-~-~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      .|..++.|.+..  ++|+|.|++||.|.   .|.+ + ++|.. ....|...|.++.|+|.|.|+.||..
T Consensus        49 pC~n~g~C~~~~--~~y~C~C~~G~~G~---~C~~~i~d~C~~-~~~~C~~~C~~~~g~y~C~C~~Gy~l  112 (134)
T 2vh0_B           49 PCQNQGKCKDGL--GEYTCTCLEGFEGK---NCELFTRKLCSL-DNGDCDQFCHEEQNSVVCSCARGYTL  112 (134)
T ss_dssp             -------------------------------------CCGGGT-GGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred             CCCCcCCcccCC--CCEEeeCCCCccCC---ccccCCCCcccc-CCCCCCCEeECCCCCEEEECCCCcEE
Confidence            477778897654  47999999999986   4877 5 78854 23467779999999999999999984

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.43  E-value=8.9e-05  Score=80.86  Aligned_cols=60  Identities=40%  Similarity=0.848  Sum_probs=49.4

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|.+..  ++|+|.|++||++..-..|.+++||..  ...|...|.|+.|+|.|.|+.||..+.
T Consensus       325 ~C~~~~--~~y~C~C~~Gy~l~~g~~C~dideC~~--~~~C~~~C~n~~gsy~C~C~~Gy~l~~  384 (791)
T 3m0c_C          325 VCNDLK--IGYECLCPDGFQLVAQRRCEDIDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDP  384 (791)
T ss_dssp             EEEECS--BSEEEECCTTCEEETTTEEECCCCCSS--SSSCTTTCCBCSSCBCCCCCSSEECCS
T ss_pred             cccCCC--CCcccCCCCCCccCCCCccccCcccCC--CCCCCCeeecCCCCceeecCCCCEeCC
Confidence            566544  589999999998743347999999974  457889999999999999999998754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.39  E-value=0.00018  Score=77.73  Aligned_cols=61  Identities=39%  Similarity=0.838  Sum_probs=49.6

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCCc
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .|.+..  ++|+|.|++||++..-..|.+++||..  ...|...|.|+.|+|.|.|+.||.++..
T Consensus       307 ~C~~~~--~~~~C~C~~G~~~~~~~~C~dideC~~--~~~C~~~C~n~~g~y~C~C~~G~~~~~~  367 (699)
T 1n7d_A          307 VCNDLK--IGYECLCPDGFQLVAQRRCEDIDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDPH  367 (699)
T ss_dssp             TCCCCT--TCCCCCCCSSSCCCSSSCCCCCCCCSS--SSSCTTTCCBCSSCBCCCCCSSCBCCSS
T ss_pred             CcccCC--CCcEEeCCCCeEcCCCCcccCccccCC--CCccccccccCCCCeeeeeecccccCCC
Confidence            455433  589999999999854458999999974  3468899999999999999999987543

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=97.32  E-value=2.5e-05  Score=67.96  Aligned_cols=56  Identities=43%  Similarity=0.892  Sum_probs=46.3

Q ss_pred             CCeeeeeCC--CCccCCCC-CcccCccccccCCCCcc-CcCcCCCCCccccCCCCCCCCCc
Q 011189          266 EGYRCLCKP--GFQGNPYL-GCHDIDECKEKERYHCE-GTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       266 ~g~~C~C~~--G~~gn~~~-gC~~~~~C~~~~~~~c~-~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .+|+|.|++  ||.|++.. .|.+++||.. ....|. +.|.|+.|+|.|.|+.||.++..
T Consensus        98 ~~y~C~C~~g~G~~~~~~~~~c~dideC~~-~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d  157 (162)
T 1uzk_A           98 SEYKILCPGGEGFRPNPITVILEDIDECQE-LPGLCQGGKCINTFGSFQCRCPTGYYLNED  157 (162)
T ss_dssp             HHHHHHCTTCTTEEECTTTCCEEECCHHHH-CGGGGBTSEEEECSSCEEEECCTTCCBCTT
T ss_pred             CCceeECCCCCCcccCCCCCccCccccccC-CCCCcCCCEeEcCCCCEEeeCCCCccCCCC
Confidence            479999988  99998765 7899999964 223564 69999999999999999998643

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.26  E-value=0.00023  Score=59.80  Aligned_cols=62  Identities=31%  Similarity=0.979  Sum_probs=49.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcc-cCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCH-DIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~-~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|..++.|.+..  ++|+|.|++||.|..   |. ++++|..   .+|  .+.|.++.++|.|.|+.||.+..
T Consensus        52 ~C~~~~~C~~~~--g~~~C~C~~G~~G~~---C~~~~~~C~~---~~C~~~g~C~~~~g~~~C~C~~G~~G~~  116 (135)
T 2vj3_A           52 PCQNDATCLDQI--GEFQCICMPGYEGVH---CEVNTDECAS---SPCLHNGRCLDKINEFQCECPTGFTGHL  116 (135)
T ss_dssp             CCCSSCEEEECS--SCEEEECCTTEESSS---SCEECCTTTT---CCSTTTCEEEECSSCEEEECCTTEESSS
T ss_pred             CCCCCCEEeCCC--CCceeeCCCCCcCCc---ceecCCcccC---CCcCCCCEeECCCCCeEEECCCCCcCCc
Confidence            577778898754  479999999999864   64 6788853   345  57899999999999999998863

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=97.24  E-value=2.4e-05  Score=69.83  Aligned_cols=67  Identities=28%  Similarity=0.654  Sum_probs=51.7

Q ss_pred             CCCCCCeeecC--CCCCCeeeeeCCCCccCCC--CCcccC--ccccccCCCCc---cCcCcCCCCCccccCCCCCCCCCc
Q 011189          252 RCGDNTNCDYS--ENGEGYRCLCKPGFQGNPY--LGCHDI--DECKEKERYHC---EGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       252 ~C~~~~~C~~~--~~~~g~~C~C~~G~~gn~~--~gC~~~--~~C~~~~~~~c---~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .|..++.|...  ...++|+|.|++||.|++.  ..|.++  ++|..    .|   .+.|.++.++|.|.|+.||.++..
T Consensus        98 ~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~----~C~~~~~~C~n~~g~y~C~C~~G~~g~~~  173 (186)
T 1z1y_A           98 NCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL----XCNTDNEVCXNVEGVYXCQCMEGFTFDXE  173 (186)
T ss_dssp             CCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCC----CCCTTTEEEEEETTEEEEEECTTCEEETT
T ss_pred             CCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccc----cccccCcceecCCCCeeeECCCCCccCcc
Confidence            47777889721  1224899999999999653  268876  78863    56   678999999999999999988754

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.18  E-value=0.00021  Score=60.55  Aligned_cols=67  Identities=28%  Similarity=0.667  Sum_probs=46.3

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCC----------CcccCccccccCCCCc--cCcCc-------CCCCCcccc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYL----------GCHDIDECKEKERYHC--EGTCK-------NTFGNYTCD  312 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~----------gC~~~~~C~~~~~~~c--~~~C~-------n~~g~~~C~  312 (491)
                      .|..++.|.+....++|+|.|++||.|..-.          .|.++++|..   .+|  .+.|.       ++.++|.|.
T Consensus         7 pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~---~~C~~~g~C~~~~~~~~~~~~~~~C~   83 (143)
T 4d90_A            7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP---NPCHNGGTCEISEAYRGDTFIGYVCK   83 (143)
T ss_dssp             CCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSS---CCCCTTCEEEECCCEETTEECCEEEE
T ss_pred             cCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCC---CCCCCCCEecCCCccccCCCCCeEeE
Confidence            5777889987554458999999999986421          3445666642   235  46787       777899999


Q ss_pred             CCCCCCCCC
Q 011189          313 CPIGMHGDG  321 (491)
Q Consensus       313 C~~g~~~~~  321 (491)
                      |+.||.+..
T Consensus        84 C~~G~~G~~   92 (143)
T 4d90_A           84 CPRGFNGIH   92 (143)
T ss_dssp             CCTTEESTT
T ss_pred             CcCCCcCCC
Confidence            999998753

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=97.07  E-value=5.7e-05  Score=64.55  Aligned_cols=54  Identities=37%  Similarity=0.759  Sum_probs=42.9

Q ss_pred             eeeeeCCCCccCCCCCcccCccccccCCCCcc-CcCcCCCCCccccCCCCCCCCCc
Q 011189          268 YRCLCKPGFQGNPYLGCHDIDECKEKERYHCE-GTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       268 ~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~-~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      |+|.|++||+++.-..|.+++||.. ....|. +.|.|+.|+|.|.|+.||.++..
T Consensus        88 ~~C~C~~Gy~~~~g~~C~dideC~~-~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~  142 (147)
T 2w86_A           88 VDPICGKGYSRIKGTQCEDIDECEV-FPGVCKNGLCVNTRGSFKCQCPSGMTLDAT  142 (147)
T ss_dssp             CCTTTCTTEEEEETTEEEECCHHHH-STTCSSSSEEEEETTEEEEECCTTCCBCTT
T ss_pred             CcccCCCccccCCCCccCccccccC-CCCCCCCCEEECCCCCEEeeCCCCCccCCC
Confidence            7899999998633346999999964 233463 68999999999999999998753

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=96.97  E-value=0.0016  Score=60.90  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=70.2

Q ss_pred             HHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEE
Q 011189          385 IKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       385 ~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~l  463 (491)
                      ......|.....++.|+.+.||+... .++.+++|....... .....+.+|++++..+. |..+.++++.....+..++
T Consensus        10 ~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~-~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l   87 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK-GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             HHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             HHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccC-CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence            33445676667788888999999875 468899999865321 12245888999999884 6778899999888889999


Q ss_pred             EEeccCCCChhhhh
Q 011189          464 VYEFVSNGTLFHHI  477 (491)
Q Consensus       464 v~Ey~~~GsL~~~L  477 (491)
                      ||||++|.+|.+.+
T Consensus        88 v~e~i~G~~l~~~~  101 (263)
T 3tm0_A           88 LMSEADGVLCSEEY  101 (263)
T ss_dssp             EEECCSSEEHHHHC
T ss_pred             EEEecCCeehhhcc
Confidence            99999999988753

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.78  E-value=0.00029  Score=48.47  Aligned_cols=37  Identities=32%  Similarity=0.786  Sum_probs=29.8

Q ss_pred             ccCccccccC-------CCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          285 HDIDECKEKE-------RYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       285 ~~~~~C~~~~-------~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|++||....       ...|.+.|.|+.|+|.|.|+.||.++.
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~   45 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECT
T ss_pred             CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECC
Confidence            4688886532       357888999999999999999998653

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=96.62  E-value=0.00082  Score=52.09  Aligned_cols=47  Identities=34%  Similarity=0.983  Sum_probs=38.8

Q ss_pred             CCeeeeeCCCCccCCCCCcc--cCccccccCCCCc--cCcCcCCC--CCccccCCCCCCCC
Q 011189          266 EGYRCLCKPGFQGNPYLGCH--DIDECKEKERYHC--EGTCKNTF--GNYTCDCPIGMHGD  320 (491)
Q Consensus       266 ~g~~C~C~~G~~gn~~~gC~--~~~~C~~~~~~~c--~~~C~n~~--g~~~C~C~~g~~~~  320 (491)
                      .+|+|.|++||.     .|.  ++++|..   .+|  .+.|.++.  ++|.|.|+.||.|.
T Consensus        30 ~~y~C~C~~G~~-----~C~~~~~~~C~~---~pC~ngg~C~~~~~~~~~~C~C~~G~~G~   82 (91)
T 1tpg_A           30 RVEYCWCNSGRA-----QCHSVPVKSCSE---PRCFNGGTCQQALYFSDFVCQCPEGFAGK   82 (91)
T ss_dssp             CEEEEECSSSCC-----BCCEECEEECSS---CCSCTTCEEEEESSSSCEEEECCTTCBSS
T ss_pred             CCcEeECCCCCc-----ccccCcCCcccC---CCCCCCCEeecCCCCCCeEeECCCCCcCC
Confidence            589999999997     585  7888964   346  57899877  99999999999876

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=96.54  E-value=0.00068  Score=55.40  Aligned_cols=61  Identities=26%  Similarity=0.684  Sum_probs=43.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCcccccc-CCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEK-ERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~-~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|. + .|.+.. .++|+|.|++||+|++.    ++++|..+ ....|.+.|.+ .++|.|.|+.||.++
T Consensus        11 pC~-~-~C~~~~-~g~y~C~C~~Gy~g~~~----~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~   72 (118)
T 1dx5_I           11 NCE-Y-QCQPLD-QTSYLCVCAEGFAPIPH----EPHRCQMFCNQTACPADCDP-NTQASCECPEGYILD   72 (118)
T ss_dssp             CCS-S-EEEECS-SSCEEEECCTTEEEETT----EEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEE
T ss_pred             CCC-C-CCCCCC-CCCEEeECCCCccccCC----CCCccccccCCCCCCCcccC-CCCeEeECCCCccCC
Confidence            454 2 788752 24899999999999863    34455431 23467788888 589999999999854

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=96.16  E-value=0.00084  Score=58.19  Aligned_cols=64  Identities=33%  Similarity=0.732  Sum_probs=45.1

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCC-CcccCcc--ccccCC-C--CccCcCcCCCC----CccccCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDE--CKEKER-Y--HCEGTCKNTFG----NYTCDCPIGMH  318 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~--C~~~~~-~--~c~~~C~n~~g----~~~C~C~~g~~  318 (491)
                      .|. ++.|.+..  ++|+|.|++||++++.. .|.++++  |..... .  ...+.|.++.+    +|.|.|+.||.
T Consensus        11 ~C~-~~~C~n~~--gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~   84 (162)
T 1uzk_A           11 TCI-SGNCVNTP--GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA   84 (162)
T ss_dssp             SSB-TSEEEEET--TEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCE
T ss_pred             CCC-CCEeECCC--CCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCC
Confidence            465 68898765  48999999999987643 7988887  853211 1  12668888777    79999999986

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.06  E-value=0.0044  Score=57.39  Aligned_cols=73  Identities=16%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             ccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCc--cccEEeEEEeCCccEEEEeccCCCChh
Q 011189          398 GEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN--VVKILGLCLQTKVPLLVYEFVSNGTLF  474 (491)
Q Consensus       398 G~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~lv~Ey~~~GsL~  474 (491)
                      +.|..+.||+....++..+++|......    ...+.+|+.++..+.+.+  +.++++.....+..++||||+++.+|.
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~~----~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~  103 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSGA----LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL  103 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSCT----TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCccc----chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence            4556699999987667789999876531    245678888888885544  456888877777889999999998884

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=95.68  E-value=0.0033  Score=54.77  Aligned_cols=50  Identities=38%  Similarity=1.004  Sum_probs=40.3

Q ss_pred             CeeeeeCCCCccCCCCCcc-cCccccccCCCCc--cCcCcCC-CCCccccCCCCCCCCC
Q 011189          267 GYRCLCKPGFQGNPYLGCH-DIDECKEKERYHC--EGTCKNT-FGNYTCDCPIGMHGDG  321 (491)
Q Consensus       267 g~~C~C~~G~~gn~~~gC~-~~~~C~~~~~~~c--~~~C~n~-~g~~~C~C~~g~~~~~  321 (491)
                      .|+|.|++||.|..   |. ++++|...  .+|  ++.|.++ .++|.|.|++||.++.
T Consensus       113 ~~~C~C~~G~~G~~---C~~~~~~C~~~--~~C~~~g~C~~~~~~~~~C~C~~G~~G~~  166 (169)
T 2vj2_A          113 PWQCLCETNWGGQL---CDKDLNYCGTH--QPCLNGGTCSNTGPDKYQCSCPEGYSGPN  166 (169)
T ss_dssp             TTCCEECTTEETTT---TCEESCHHHHT--CCCCTTCEEEECSTTCEEEECCTTCCSTT
T ss_pred             CCEEeCCCCCCCCc---ccCCCCCCCCC--CCCCCCCEEcCCCCCCcEeECCCCCcCcC
Confidence            68999999999863   76 78888642  345  5789986 8999999999998863

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=94.80  E-value=0.041  Score=53.78  Aligned_cols=81  Identities=15%  Similarity=0.299  Sum_probs=56.6

Q ss_pred             ccceeccCCcceEEEEEEcCCcEEEEEecc--ccchhhHHHHHHHHHHHHHcCC--CCccccEEeEEEeC---CccEEEE
Q 011189          393 KSNFLGEGGFGSVYRGVLSDDTQVAVKKPK--EADKIRVSQEFQHEMGIVSQIN--HKNVVKILGLCLQT---KVPLLVY  465 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~~~~~~vavK~l~--~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~---~~~~lv~  465 (491)
                      ..+.++.|.++.||+.... +..+++|+..  ..........+.+|..++..+.  +..+.++++.+...   +..++||
T Consensus        42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            3467899999999998874 4677888776  3322123456888999999887  45678888887665   3489999


Q ss_pred             eccCCCChh
Q 011189          466 EFVSNGTLF  474 (491)
Q Consensus       466 Ey~~~GsL~  474 (491)
                      ||+++..|.
T Consensus       121 e~v~G~~l~  129 (359)
T 3dxp_A          121 EFVSGRVLW  129 (359)
T ss_dssp             ECCCCBCCC
T ss_pred             EecCCeecC
Confidence            999988774

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=94.77  E-value=0.01  Score=44.71  Aligned_cols=36  Identities=47%  Similarity=0.977  Sum_probs=29.2

Q ss_pred             CcccCccccccCCCCc-cCcCcCCCCCccccCCCCCCCC
Q 011189          283 GCHDIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       283 gC~~~~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|.|++||..  ..+| ++.|.|+.++|.|.|+.||.++
T Consensus         1 sC~dideC~~--~~~C~~g~C~n~~g~y~C~C~~Gy~~~   37 (82)
T 1emn_A            1 SAVDMDECKE--PDVCKHGQCINTDGSYRCECPFGYILA   37 (82)
T ss_dssp             CCCCCCSSSS--TTSCSSSEECCCSSCCCEECCTTEEEE
T ss_pred             CCCccccCCC--CCCcCCCEEEecCCCEEEECCCCeECC
Confidence            3789999975  2456 4799999999999999999743

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=94.18  E-value=0.021  Score=39.05  Aligned_cols=36  Identities=33%  Similarity=0.808  Sum_probs=27.4

Q ss_pred             cCccccccCCCCc--cCcCc--CCCCCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHC--EGTCK--NTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c--~~~C~--n~~g~~~C~C~~g~~~~~  321 (491)
                      ++++|......+|  .+.|.  +..++|.|.|+.||.|..
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   41 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDR   41 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSS
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCc
Confidence            4677765433467  47898  889999999999998863

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=93.96  E-value=0.008  Score=41.51  Aligned_cols=31  Identities=19%  Similarity=0.544  Sum_probs=25.1

Q ss_pred             ccccccCCCCccCcCcCCCCCccccCCCCCCC
Q 011189          288 DECKEKERYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       288 ~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      +||.. ....|...|.|++|+|.|.|+.||..
T Consensus         2 dEC~~-~~~~C~~~C~nt~Gsy~C~C~~Gy~L   32 (55)
T 2jkh_L            2 KLCSL-DNGDCDQFCHEEQNSVVCSCARGYTL   32 (55)
T ss_dssp             CCTTT-GGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred             ccccC-CCCCcCcEeEcCCCCeEEeCCCCCEE
Confidence            56743 34568889999999999999999974

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=93.86  E-value=0.019  Score=44.18  Aligned_cols=41  Identities=12%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             CeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCC
Q 011189          267 GYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMH  318 (491)
Q Consensus       267 g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~  318 (491)
                      +|+|.|.+||.|.-   | ++++|..       ..|.|..++|.|.|++||.
T Consensus         1 sy~C~C~~g~~g~~---c-~~~~c~~-------~pC~n~~~~y~C~C~~G~~   41 (91)
T 1tpg_A            1 SYQVICRDEKTQMI---Y-QQHQSWL-------RPVLRSNRVEYCWCNSGRA   41 (91)
T ss_dssp             CCCCCCBCSSSCCB---C-CSSCEEE-------EECSSSSCEEEEECSSSCC
T ss_pred             CeeeECCCCCcCCe---E-CCCcccC-------CccccCCCCcEeECCCCCc
Confidence            48999999999863   3 4677742       2367788999999999996

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=93.81  E-value=0.018  Score=36.42  Aligned_cols=32  Identities=41%  Similarity=1.091  Sum_probs=25.5

Q ss_pred             cCccccccCCCCc--cCcCcCCCCCccccCCCCCCCC
Q 011189          286 DIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       286 ~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      ++++|..   .+|  .+.|.++.++|.|.|+.||.+.
T Consensus         2 d~d~C~~---~pC~ngg~C~~~~~~~~C~C~~G~~G~   35 (39)
T 1edm_B            2 DGDQCES---NPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             CCCTTTT---CCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             ccccCCC---CCCCCCCEeEcCCCceEeECCCCCcCC
Confidence            5677753   355  5789999999999999999876

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=93.61  E-value=0.061  Score=33.88  Aligned_cols=27  Identities=30%  Similarity=0.800  Sum_probs=22.0

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|.+..  .+|+|.|++||.|..
T Consensus        10 pC~ngg~C~~~~--~~~~C~C~~G~~G~~   36 (39)
T 1edm_B           10 PCLNGGSCKDDI--NSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCTTCEEEEET--TEEEEECCTTCCSTT
T ss_pred             CCCCCCEeEcCC--CceEeECCCCCcCCc
Confidence            577788998754  589999999999863

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=93.52  E-value=0.085  Score=36.20  Aligned_cols=30  Identities=27%  Similarity=0.578  Sum_probs=22.5

Q ss_pred             cCCCCCCeeecC---CCCCCeeeeeCCCCccCC
Q 011189          251 YRCGDNTNCDYS---ENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       251 ~~C~~~~~C~~~---~~~~g~~C~C~~G~~gn~  280 (491)
                      ..|..++.|...   +...+|+|.|++||.|.-
T Consensus        14 ~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~   46 (55)
T 3u7u_G           14 TFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDR   46 (55)
T ss_dssp             TTSCTTCEEEEECCC--CCCEEEEECTTEESTT
T ss_pred             CCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCC
Confidence            368889999542   233689999999999964

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=93.43  E-value=0.028  Score=44.72  Aligned_cols=35  Identities=26%  Similarity=0.556  Sum_probs=28.3

Q ss_pred             cccCccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          284 CHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       284 C~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      | +++||... ...|...|.++.++|.|.|+.||.+.
T Consensus        27 C-d~neC~~~-~~~C~~~C~n~~g~y~C~C~~Gy~g~   61 (107)
T 2w2n_E           27 M-GTNECLDN-NGGCSYVCNDLKIGYECLCPDGFQLV   61 (107)
T ss_dssp             B-SCCGGGTG-GGGCSSEEECCSBSCEEECCTTCEEE
T ss_pred             C-cCccCcCC-CCCCCCEeEeCCCCeEEECCCCcccc
Confidence            5 68888642 34677899999999999999999874

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=93.27  E-value=0.053  Score=35.50  Aligned_cols=29  Identities=24%  Similarity=0.503  Sum_probs=22.3

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|.......+|+|.|++||.|.-
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   38 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDR   38 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTT
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCc
Confidence            57778899743344589999999999863

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=92.99  E-value=0.017  Score=41.84  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             ccCccccccCCCCccCcCcCCCC-CccccCCCCCCCC
Q 011189          285 HDIDECKEKERYHCEGTCKNTFG-NYTCDCPIGMHGD  320 (491)
Q Consensus       285 ~~~~~C~~~~~~~c~~~C~n~~g-~~~C~C~~g~~~~  320 (491)
                      .|++||.. .+..|...|.|+.| +|.|.|+.||...
T Consensus         3 ~d~~eC~~-~nggC~h~C~n~~g~s~~C~C~~Gy~L~   38 (69)
T 1kli_L            3 DDQLICVN-ENGGCEQYCSDHTGTKRSCRCHEGYSLL   38 (69)
T ss_dssp             SCCCCTTS-GGGGCSSEEEEETTTEEEEECCTTEEEC
T ss_pred             cccccccC-CCCCcCCEeEcCCCCCEEEeCCCCCeEC
Confidence            57888853 34578889999998 7999999999743

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=92.92  E-value=0.04  Score=51.51  Aligned_cols=39  Identities=21%  Similarity=0.542  Sum_probs=32.2

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccc
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKE  292 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~  292 (491)
                      ..|..++.|.|..  ++|.|.|++||.||.. .|.++++..+
T Consensus        13 ~~C~~~a~C~Nt~--Gsy~C~C~~Gy~GnG~-~C~d~d~PqR   51 (285)
T 1gl4_A           13 HQCSVHAECRDYA--TGFCCRCVANYTGNGR-QCVAEGSPQR   51 (285)
T ss_dssp             GGSCTTEEEEECS--SCEEEEECTTEEECSS-SEEETTCEEE
T ss_pred             CCCCCCCEeEcCC--CCeEEEcCCCCCCCCC-cCCCCCCCce
Confidence            4688889999855  5899999999999986 5998887643

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=92.65  E-value=0.049  Score=38.29  Aligned_cols=35  Identities=26%  Similarity=0.699  Sum_probs=26.1

Q ss_pred             CCCCC--CeeecCCCCCCeeeeeCCCCc-cCCCCCcccCcccc
Q 011189          252 RCGDN--TNCDYSENGEGYRCLCKPGFQ-GNPYLGCHDIDECK  291 (491)
Q Consensus       252 ~C~~~--~~C~~~~~~~g~~C~C~~G~~-gn~~~gC~~~~~C~  291 (491)
                      -|..+  +.|.+..  ++|.|.|++||. |..   |.+.++|.
T Consensus        18 PC~nga~gtC~~~~--g~y~C~C~~Gy~~G~~---C~~~~~C~   55 (61)
T 2k2s_B           18 PCGPEAAGTCKETN--SGYICRCNQGYRISLD---GTGNVTCI   55 (61)
T ss_dssp             SSCSSSCCEEEECS--SEEEEECCTTEEEEEC---SSSCEEEE
T ss_pred             CCcCCCccccccCC--CceEeECCCCCccCCC---CCCCCEec
Confidence            47666  7898754  489999999999 854   66666664

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=92.48  E-value=0.047  Score=37.56  Aligned_cols=31  Identities=16%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCccc
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDEC  290 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C  290 (491)
                      .|.+..  ++|+|.|++||.-.+.. .|.+++||
T Consensus        14 ~C~nt~--Gsy~C~C~~Gy~L~~d~~~C~didec   45 (55)
T 2jkh_L           14 FCHEEQ--NSVVCSCARGYTLADNGKACIPTGPY   45 (55)
T ss_dssp             EEEEET--TEEEEECCTTEEECTTSSCEEESSSS
T ss_pred             EeEcCC--CCeEEeCCCCCEECCCCCeeccCccc
Confidence            687754  58999999999865443 79999987

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=92.39  E-value=0.086  Score=35.85  Aligned_cols=29  Identities=28%  Similarity=0.637  Sum_probs=22.2

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|......++|.|.|++||.|.-
T Consensus        13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   41 (53)
T 1egf_A           13 YCLNGGVCMHIESLDSYTCNCVIGYSGDR   41 (53)
T ss_dssp             SSCSSCEEEEESSSSCEEEECCTTCCSSS
T ss_pred             cCCCCcEEEeeCCCCCEEEECCCCCcCCc
Confidence            57778899842233589999999999863

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=92.10  E-value=0.017  Score=54.02  Aligned_cols=38  Identities=21%  Similarity=0.684  Sum_probs=27.8

Q ss_pred             ccCccccccCCCCcc--CcCcCCCCCccccCCCCCCCCCcc
Q 011189          285 HDIDECKEKERYHCE--GTCKNTFGNYTCDCPIGMHGDGKV  323 (491)
Q Consensus       285 ~~~~~C~~~~~~~c~--~~C~n~~g~~~C~C~~g~~~~~~~  323 (491)
                      .|++||... .+.|.  ..|.|+.|+|.|.|+.||.+++..
T Consensus         3 ~DiDEC~~~-~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~   42 (285)
T 1gl4_A            3 LAQQTCANN-RHQCSVHAECRDYATGFCCRCVANYTGNGRQ   42 (285)
T ss_dssp             ----CHHHH-GGGSCTTEEEEECSSCEEEEECTTEEECSSS
T ss_pred             ccchhccCC-CCCCCCCCEeEcCCCCeEEEcCCCCCCCCCc
Confidence            368899642 45674  679999999999999999988754

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=92.06  E-value=0.036  Score=40.41  Aligned_cols=34  Identities=29%  Similarity=0.628  Sum_probs=23.6

Q ss_pred             ccCccccccCCCCc--cCcCcCCCCCcccc-CCCCCCC
Q 011189          285 HDIDECKEKERYHC--EGTCKNTFGNYTCD-CPIGMHG  319 (491)
Q Consensus       285 ~~~~~C~~~~~~~c--~~~C~n~~g~~~C~-C~~g~~~  319 (491)
                      .|++||.. ....|  .+.|.|+.|+|+|. ++.||.+
T Consensus         1 ~DidEC~~-~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            1 SDVNECLT-IPEACKGEMKCINHYGGYLCLPRSAAVIN   37 (71)
T ss_dssp             CCSCCTTC-CCCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred             CccccccC-CCCCCCCCCEeECCCCCeEecccCCcccc
Confidence            36889964 23457  35899999999997 3345544

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=92.04  E-value=0.071  Score=35.11  Aligned_cols=28  Identities=25%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|.. +.|.+.....+|.|.|++||.|.-
T Consensus        13 pC~n-G~C~~~~~~~~~~C~C~~GytG~~   40 (46)
T 1k36_A           13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVR   40 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTT
T ss_pred             CCCC-CEeeccCCCCCEEEECCCCCccCC
Confidence            5766 789875544589999999999964

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=91.97  E-value=0.023  Score=40.04  Aligned_cols=34  Identities=35%  Similarity=0.759  Sum_probs=27.3

Q ss_pred             cccCccccccCCCCc--c--CcCcCCCCCccccCCCCCC-CC
Q 011189          284 CHDIDECKEKERYHC--E--GTCKNTFGNYTCDCPIGMH-GD  320 (491)
Q Consensus       284 C~~~~~C~~~~~~~c--~--~~C~n~~g~~~C~C~~g~~-~~  320 (491)
                      |.++++|.+   .+|  +  +.|.++.++|.|.|+.||. |.
T Consensus         8 ~~~~d~C~s---nPC~nga~gtC~~~~g~y~C~C~~Gy~~G~   46 (61)
T 2k2s_B            8 SETPAACSS---NPCGPEAAGTCKETNSGYICRCNQGYRISL   46 (61)
T ss_dssp             TTSCCHHHH---CSSCSSSCCEEEECSSEEEEECCTTEEEEE
T ss_pred             cCCCCcCcC---CCCcCCCccccccCCCceEeECCCCCccCC
Confidence            667788853   356  3  6899999999999999998 65

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=91.60  E-value=0.059  Score=36.37  Aligned_cols=25  Identities=20%  Similarity=0.525  Sum_probs=21.5

Q ss_pred             CCCccCcCcCCCCCccccCCCCCCC
Q 011189          295 RYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       295 ~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      +..|...|.|+.|+|.|.|+.||..
T Consensus         5 ng~C~~~C~n~~gs~~C~C~~Gy~L   29 (51)
T 1kig_L            5 NGGCDQFCREERSEVRCSCAHGYVL   29 (51)
T ss_dssp             TTSSSSCCCEETTEECCCCCTTEEE
T ss_pred             CCCcCCEeEcCCCCeEEeCCCCcEE
Confidence            3467788999999999999999974

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=91.53  E-value=0.077  Score=36.14  Aligned_cols=29  Identities=31%  Similarity=0.686  Sum_probs=22.4

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|.......+|.|.|++||.|.-
T Consensus        13 pC~nGG~C~~~~~~~~~~C~C~~GytG~~   41 (53)
T 1nql_B           13 YCLHDGVCMYIEALDKYACNCVVGYIGER   41 (53)
T ss_dssp             EECTTCEEEEETTTTEEEEEECTTEESTT
T ss_pred             CCCCCeEEeeecCCCCEEEecCCCCcCCC
Confidence            57778899743334589999999999964

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=91.37  E-value=0.042  Score=46.41  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=24.5

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCC-CcccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYL-GCHDI  287 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~  287 (491)
                      .|. |+.|.+..  ++|+|.|++||.|++-. .|.+.
T Consensus        11 pC~-ng~C~n~~--g~y~C~C~~G~~g~~~~~~C~~~   44 (147)
T 2w86_A           11 PCI-NGVCKNSP--GSFICECSSESTLDPTKTICIET   44 (147)
T ss_dssp             CSB-TSEEEEET--TEEEEECCTTEEECTTSSBEEEC
T ss_pred             CCC-CCEeECCC--CCEEeECCCCcccCCCCCeecCC
Confidence            465 57898765  48999999999998653 56543

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=91.36  E-value=0.27  Score=46.20  Aligned_cols=78  Identities=19%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             ccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC---CccccEEeEEEeCCccEEEEec
Q 011189          391 YDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH---KNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       391 ~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +...+.+|.|..+.||+..+.+|+.+.+|+...... .....|.+|++.|+.+..   --+.+.++.    +..++||||
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~-~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~   91 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAP-ALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEW   91 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCC-CCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEEC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCc-chhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEe
Confidence            444567899999999999999999999998654322 223457789998888742   234455543    245799999


Q ss_pred             cCCCCh
Q 011189          468 VSNGTL  473 (491)
Q Consensus       468 ~~~GsL  473 (491)
                      ++.+..
T Consensus        92 l~~~~~   97 (288)
T 3f7w_A           92 VDERPP   97 (288)
T ss_dssp             CCCCCC
T ss_pred             ecccCC
Confidence            987654

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=90.83  E-value=0.21  Score=34.73  Aligned_cols=42  Identities=17%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCccccccCCCCccCcCcCCC
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDECKEKERYHCEGTCKNTF  306 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C~~~~~~~c~~~C~n~~  306 (491)
                      .|.+... ++|.|.|++||.-.+.. .|.+++      ..+|...|.|..
T Consensus        12 ~C~n~~~-gs~~C~C~~Gy~L~~D~~tC~d~~------~~pC~~~c~n~~   54 (59)
T 2wph_E           12 FCKNSAD-NKVVCSCTEGYRLAENQKSCEPAV------PFPCGRVSVSQT   54 (59)
T ss_dssp             EEEECST-TCEEEECCTTEEECTTSSCEEESS------SSCTTCCCSCCC
T ss_pred             EeEeCCC-CCEEeeCCCCcEECCCCCcccCCC------CCCCCCcccccc
Confidence            4776442 48999999999865433 677654      346777777643

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=90.62  E-value=0.9  Score=43.38  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             cccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC---CCccccEEeEEEeCCccEEEEecc
Q 011189          392 DKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN---HKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ...+.|+.|....+|+... ++..+.+|.....    ....|.+|.+.|+.+.   ...+.++++.....+..++||||+
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence            3446789999999999876 5667888876532    2466888988888873   356788888887778899999999


Q ss_pred             CCCCh
Q 011189          469 SNGTL  473 (491)
Q Consensus       469 ~~GsL  473 (491)
                      ++..+
T Consensus       114 ~G~~~  118 (312)
T 3jr1_A          114 NKSKN  118 (312)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            98765

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=90.57  E-value=0.048  Score=35.97  Aligned_cols=36  Identities=25%  Similarity=0.624  Sum_probs=25.0

Q ss_pred             cCccccccCCCCc-cCcCcCCC--CCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHC-EGTCKNTF--GNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c-~~~C~n~~--g~~~C~C~~g~~~~~  321 (491)
                      ++++|.+....+| +|.|....  ++|.|.|+.||.|..
T Consensus         2 ~i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~GytG~~   40 (46)
T 1k36_A            2 SITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVR   40 (46)
T ss_dssp             CEECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCSSTT
T ss_pred             ccccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCccCC
Confidence            3566755434556 46887533  679999999999863

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=90.45  E-value=0.15  Score=38.64  Aligned_cols=35  Identities=40%  Similarity=0.945  Sum_probs=27.2

Q ss_pred             ccCccccccCCCCc-cCcCcCCCCCccccCCCCCCCC
Q 011189          285 HDIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       285 ~~~~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      ++++||... ...| .+.|.++.++|.|.|++||.++
T Consensus         1 ~dideC~~~-~~~C~~~~C~n~~g~y~C~C~~G~~~~   36 (87)
T 1z6c_A            1 KDVDECSLK-PSICGTAVCKNIPGDFECECPEGYRYN   36 (87)
T ss_dssp             CCSCSSSSS-SSSBTTSSCCCBTTBCCCSSSTTCEEE
T ss_pred             CccccccCC-CCCCCCCEeECCCCCEEEECCCCceEC
Confidence            367888642 2236 6789999999999999999854

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=90.22  E-value=0.0094  Score=55.34  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCC---------------------------CcccCccccccCCCCccCcCc
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL---------------------------GCHDIDECKEKERYHCEGTCK  303 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~---------------------------gC~~~~~C~~~~~~~c~~~C~  303 (491)
                      ..|.+++.|.+..  .+|.|.|+.||+|.--.                           -|.+++||.+ ....-.+.|.
T Consensus        38 ~~c~ngG~C~~g~--~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s-~pC~ngG~C~  114 (267)
T 4fbr_A           38 IKSDDGGKTLKGT--MTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVS-IKSNDGGKTL  114 (267)
T ss_dssp             EECSSTTSEEEEE--EEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEE-EECSSTTSEE
T ss_pred             CCcCCCCeecCCC--CCeEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCccccccccCC-CCCCCCCEEe
Confidence            3577788998755  47999999999873211                           1222334432 1112267888


Q ss_pred             CCCCCccccCCCCCCCC
Q 011189          304 NTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       304 n~~g~~~C~C~~g~~~~  320 (491)
                      +..++|+|.|+.||.+.
T Consensus       115 ~~~~sy~C~C~~Gf~G~  131 (267)
T 4fbr_A          115 TGTTTYNGEGPIGFKSE  131 (267)
T ss_dssp             EEEEEETTSCCEEEEEE
T ss_pred             cCCccEEeeCCCCcccc
Confidence            88899999999999875

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=90.11  E-value=0.12  Score=35.15  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=23.8

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCccc
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDEC  290 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C  290 (491)
                      .|.+... ++|+|.|++||+-.+.. .|.+++||
T Consensus        12 ~C~n~~g-gs~~C~C~~Gy~L~~Dg~tC~d~dec   44 (53)
T 2bz6_L           12 YCSDHTG-TKRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             EEEEETT-TEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             EeEcCCC-CCEEeeCCCCCEECCCCCcccCCccc
Confidence            4766442 25999999999865443 79999988

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=89.66  E-value=0.21  Score=35.21  Aligned_cols=36  Identities=31%  Similarity=0.744  Sum_probs=25.8

Q ss_pred             CCCCCCeeecC---CCCCCeeeeeCCCCccCCCCCcc-cCccc
Q 011189          252 RCGDNTNCDYS---ENGEGYRCLCKPGFQGNPYLGCH-DIDEC  290 (491)
Q Consensus       252 ~C~~~~~C~~~---~~~~g~~C~C~~G~~gn~~~gC~-~~~~C  290 (491)
                      .|..++.|.+.   ....+|+|.|++||.|..   |. ++++|
T Consensus        13 pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~---Ce~~i~~~   52 (63)
T 1hae_A           13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGAR---CTENVPMK   52 (63)
T ss_dssp             TSCTTCEEEEEESSSSSCCEEEECCTTEESTT---SCEECCSS
T ss_pred             cCCCCcEEecCCccCCCCCEEEECCCCCcCCc---cCcCcCcc
Confidence            57778899862   233589999999999874   53 45554

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=89.63  E-value=0.08  Score=35.71  Aligned_cols=31  Identities=19%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCccc
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDEC  290 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C  290 (491)
                      .|.+..  ++|+|.|++||+-.+.. .|.+++||
T Consensus        11 ~C~n~~--gs~~C~C~~Gy~L~~d~~tC~dide~   42 (51)
T 1kig_L           11 FCREER--SEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             CCCEET--TEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             EeEcCC--CCeEEeCCCCcEECCCCCccccCCcc
Confidence            476643  58999999999854433 79998887

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=89.51  E-value=0.13  Score=33.53  Aligned_cols=24  Identities=42%  Similarity=1.028  Sum_probs=19.8

Q ss_pred             Cc--cCcCc--CCCCCccccCCCCCCCC
Q 011189          297 HC--EGTCK--NTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       297 ~c--~~~C~--n~~g~~~C~C~~g~~~~  320 (491)
                      +|  .+.|.  +..++|.|.|+.||.|.
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~   37 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGD   37 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETT
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCC
Confidence            45  46786  67899999999999876

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.33  E-value=0.52  Score=50.50  Aligned_cols=60  Identities=20%  Similarity=0.394  Sum_probs=40.9

Q ss_pred             CeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCC
Q 011189          257 TNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       257 ~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      +.|.+....-.+.+.|++|..+... .| +++||... ...|...|.|+.++|.|.|+.||..
T Consensus       266 g~Ci~~~~~Cd~~~dC~dgsDe~~~-~C-~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~~  325 (699)
T 1n7d_A          266 GECITLDKVCNMARDCRDWSDEPIK-EC-GTNECLDN-NGGCSHVCNDLKIGYECLCPDGFQL  325 (699)
T ss_dssp             SCCCCSSCCSCSSCCSSSSCSCCCS-SC-CCCCTTSS-TTTSCTTCCCCTTCCCCCCCSSSCC
T ss_pred             CcEeCCcccccccceecCccccccc-cc-cccccccc-ccCcCCCcccCCCCcEEeCCCCeEc
Confidence            4554433222346778877655422 35 57788642 3468889999999999999999984

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=88.85  E-value=0.11  Score=35.58  Aligned_cols=33  Identities=30%  Similarity=0.715  Sum_probs=23.7

Q ss_pred             cCccccccCCCCc--cCcC-----cCCCCCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHC--EGTC-----KNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c--~~~C-----~n~~g~~~C~C~~g~~~~~  321 (491)
                      +++||.+   .+|  .|.|     .+..++|.|.|+.||.|..
T Consensus         7 ~~~eC~s---~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~   46 (55)
T 3u7u_G            7 KCAEKEK---TFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDR   46 (55)
T ss_dssp             ECCSTTT---TTSCTTCEEEEECCC--CCCEEEEECTTEESTT
T ss_pred             cCCCCcC---CCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCC
Confidence            4677743   355  6788     4567899999999999874

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=88.80  E-value=0.13  Score=43.89  Aligned_cols=36  Identities=28%  Similarity=0.753  Sum_probs=26.6

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKE  292 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~  292 (491)
                      .|..++.|.+..  .+|.|.|++||.|+   .|..+++|..
T Consensus       126 ~C~~~g~C~~~~--~~~~c~C~~g~~G~---~Ce~~~~c~~  161 (162)
T 1g1s_A          126 SCSKQGECLETI--GNYTCSCYPGFYGP---ECEYVRDDDD  161 (162)
T ss_dssp             GGGGSEEEEECS--SSEEEEECTTEEST---TSCEECC---
T ss_pred             CCCCCCEEecCC--CCceEeCCCCCcCc---ccccCcccCC
Confidence            576678898754  47999999999996   4888888853

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=88.71  E-value=0.019  Score=39.07  Aligned_cols=39  Identities=26%  Similarity=0.672  Sum_probs=27.3

Q ss_pred             eeeeeCCCCccCCCCCcccCccccccCCCCccCcCcC----CCCCccccCCCCCCCCC
Q 011189          268 YRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKN----TFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       268 ~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n----~~g~~~C~C~~g~~~~~  321 (491)
                      +.|.|++||..+|   |..            .+.|.+    ..++|.|.|+.||.|..
T Consensus         3 ~~C~C~~g~~~~p---C~N------------GGtC~~~~~~~~~~y~C~C~~Gf~G~~   45 (52)
T 3ca7_A            3 PTYKCPETFDAWY---CLN------------DAHCFAVKIADLPVYSCECAIGFMGQR   45 (52)
T ss_dssp             CCBCCCHHHHHHT---SCT------------TCEEEEEEETTEEEEEEECCTTEESTT
T ss_pred             eeeECCCCCcCCc---CCC------------CCEEecCccCCCCCEEEECCCCCcCCC
Confidence            4699999998554   221            345654    34678999999998863

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=88.57  E-value=0.096  Score=44.67  Aligned_cols=37  Identities=32%  Similarity=0.723  Sum_probs=29.0

Q ss_pred             cccCccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          284 CHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       284 C~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +.+++||..+....|.+.|.|+.++|.|.|+.||...
T Consensus       114 ~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~  150 (159)
T 1nzi_A          114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLH  150 (159)
T ss_dssp             EEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEEC
T ss_pred             cccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEEC
Confidence            4567788665455788889999999999999999843

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=87.76  E-value=0.27  Score=49.23  Aligned_cols=65  Identities=31%  Similarity=0.680  Sum_probs=38.5

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCC-Cccc---CccccccCCCCccCcCcC----CCCCccccCCCCCCCCCc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYL-GCHD---IDECKEKERYHCEGTCKN----TFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~---~~~C~~~~~~~c~~~C~n----~~g~~~C~C~~g~~~~~~  322 (491)
                      .|..++.|.+    ..+.|.|++||.|..-. .|..   ...|..+  ..+.+.|.+    ..+++.|.|+.||.|...
T Consensus       204 ~C~~~G~C~~----~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~--C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C  276 (423)
T 2gy5_A          204 ACMNNGVCHE----DTGECICPPGFMGRTCEKACELHTFGRTCKER--CSGQEGCKSYVFCLPDPYGCSCATGWKGLQC  276 (423)
T ss_dssp             CCCTTCEECT----TTCCEECCTTEESTTSCEECCTTEESTTSCEE--CCSTTTTTTCCEEETTTTEEECCBTCBSGGG
T ss_pred             CCCCCCEEEC----CCCcEeCCCCccCCCcccccCCCCCCCCcCcc--CCCCCCCCCCCEECCCCCeEEeCCCcccccc
Confidence            4777888965    25789999999997533 2221   0122210  011223332    357789999999887543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.60  E-value=0.16  Score=51.54  Aligned_cols=50  Identities=32%  Similarity=0.860  Sum_probs=18.2

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |+.|.+     .+.|.|.+||.|..   |. +++|..    .|  .+.|.+.   +.|.|+.||.+..
T Consensus       401 nG~C~~-----~~~C~C~~G~~G~~---C~-~~~C~~----~C~~~g~C~~~---~~C~C~~G~~G~~  452 (463)
T 2wg3_C          401 NGYCTP-----TGKCCCSPGWEGDF---CR-TAKCEP----ACRHGGVCVRP---NKCLCKKGYLGPQ  452 (463)
T ss_dssp             SEEECT-----TSCEEECTTEESTT---SC-EECC---------------------------------
T ss_pred             CCccCC-----CCeECCCCCcCCCc---CC-cCcCCC----CCCCCCEECCC---CEEECCCCcccCC
Confidence            456753     35899999999974   53 456743    45  4678764   6999999998864

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=87.49  E-value=0.13  Score=38.80  Aligned_cols=35  Identities=40%  Similarity=0.901  Sum_probs=26.9

Q ss_pred             ccCccccccCCCCc-cCcCcCCCCCccccCCCCCCCC
Q 011189          285 HDIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       285 ~~~~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +|++||... ...| ++.|.|+.++|.|.|+.||.++
T Consensus         1 ~dideC~~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~~   36 (86)
T 1lmj_A            1 TDIDECRIS-PDLCGRGQCVNTPGDFECKCDEGYESG   36 (86)
T ss_dssp             CCCCTTTTC-SSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             CccccccCC-CCCCCCCEEECCCCCEEeeCCCCcCcc
Confidence            367888642 3346 4589999999999999999853

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=87.37  E-value=0.27  Score=46.32  Aligned_cols=34  Identities=26%  Similarity=0.603  Sum_probs=27.4

Q ss_pred             cCccccccCCCCccCcCcCCCCCccccCCCCCCC
Q 011189          286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       286 ~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      ++|||....+..|...|.++.++|.|.|+.|+..
T Consensus         1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l   34 (283)
T 3f1s_B            1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRL   34 (283)
T ss_dssp             --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEE
T ss_pred             CCCccCCCCCCCCCCEeeCCCCCeEecCCCCccc
Confidence            4678965436789999999999999999999864

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=87.35  E-value=0.28  Score=37.75  Aligned_cols=64  Identities=22%  Similarity=0.542  Sum_probs=40.3

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccC--ccccccCCCCc--cCcCcCCC-----CCccccCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDI--DECKEKERYHC--EGTCKNTF-----GNYTCDCPIGMH  318 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~--~~C~~~~~~~c--~~~C~n~~-----g~~~C~C~~g~~  318 (491)
                      .|..|+.|..... +...|.|.+||.|+.+ .|..+  +.|.. .+..|  ...|..+.     +...|.|..++.
T Consensus        11 ~C~~NA~C~r~~~-g~e~C~C~~gy~gdg~-~Cv~~~~~sC~~-nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C           11 QCPQNSGCFRHLD-EREECKCLLNYKQEGD-KCVENPNPTCNE-NNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCCTTEEEECCTT-SCCEEEECTTEEEETT-EEEECSCCCSTT-GGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             CCCCCCCeEEcCC-CCEEEEecCCeecCCC-eEeeCCCCChhh-cCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            5778899965443 4788999999999875 36655  24532 12233  33454442     456788877753

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=87.26  E-value=0.19  Score=33.98  Aligned_cols=29  Identities=28%  Similarity=0.624  Sum_probs=21.8

Q ss_pred             CCCCCCeeecCC--CCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSE--NGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~--~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|.+..  ...+|.|.|++||.|.-
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~   45 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQR   45 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEESTT
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCCC
Confidence            577788997531  23479999999999964

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=86.98  E-value=0.74  Score=45.37  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             cceeccCCcceEEEEEEc-CCcEEEEEeccccch------hhHHHHHHHHHHHHHcCCC--Cc-cccEEeEEEeCCccEE
Q 011189          394 SNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADK------IRVSQEFQHEMGIVSQINH--KN-VVKILGLCLQTKVPLL  463 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~------~~~~~~f~~E~~~l~~l~H--~n-iv~l~g~~~~~~~~~l  463 (491)
                      .+.||.|..+.||++... .++.+++|.......      ....+.+.+|.+++..+.+  +. +.+++..  ..+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            457999999999999753 467899997643211      0122456778888887732  33 3455543  4556789


Q ss_pred             EEeccCCCC
Q 011189          464 VYEFVSNGT  472 (491)
Q Consensus       464 v~Ey~~~Gs  472 (491)
                      ||||+++..
T Consensus       113 vmE~l~g~~  121 (397)
T 2olc_A          113 VMEDLSHLK  121 (397)
T ss_dssp             EECCCTTSE
T ss_pred             EEEeCCCcc
Confidence            999998643

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=86.76  E-value=0.13  Score=44.43  Aligned_cols=38  Identities=32%  Similarity=0.760  Sum_probs=28.8

Q ss_pred             CcccCccccccCC--CCccCcCcCCCCCccccCCCCCCCC
Q 011189          283 GCHDIDECKEKER--YHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       283 gC~~~~~C~~~~~--~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|.+++||.....  ..|...|.|+.|+|.|.|+.||...
T Consensus       120 ~~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~  159 (170)
T 1szb_A          120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLH  159 (170)
T ss_dssp             EEEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEEC
T ss_pred             eccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEEC
Confidence            3566778865321  2488899999999999999999743

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=86.55  E-value=0.27  Score=35.43  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=23.9

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCccc
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDEC  290 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C  290 (491)
                      .|.+... ++|+|.|++||.-.+.. .|.+++||
T Consensus        18 ~C~n~~g-~s~~C~C~~Gy~L~~D~~tC~d~dec   50 (69)
T 1kli_L           18 YCSDHTG-TKRSCRCHEGYSLLADGVSCTPTVEY   50 (69)
T ss_dssp             EEEEETT-TEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             EeEcCCC-CCEEEeCCCCCeECCCCCcccCcccc
Confidence            4766442 26999999999865443 89999887

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=86.15  E-value=0.21  Score=42.05  Aligned_cols=36  Identities=33%  Similarity=0.856  Sum_probs=24.8

Q ss_pred             CcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          283 GCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       283 gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|.++++|..   .+|  .+.|.++.++|.|.|+.||.+..
T Consensus        44 ~c~dideC~~---~pC~n~g~C~~~~~~y~C~C~~G~~G~~   81 (146)
T 1x7a_L           44 QYVDGDQCEP---NPCLNGGLCKDDINSYECWCQVGFEGKN   81 (146)
T ss_dssp             ------CCSS---CSSCTTCEEEECSSCEEEECCSSEESTT
T ss_pred             cCCCcCcCCC---CCCCCCCEeECCCCCEEEecCCCCcCCc
Confidence            6889999963   356  47999999999999999998753

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=86.03  E-value=0.2  Score=34.80  Aligned_cols=29  Identities=28%  Similarity=0.624  Sum_probs=21.9

Q ss_pred             CCCCCCeeecCC--CCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSE--NGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~--~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|....  ...+|.|.|++||.|.-
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~   45 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQR   45 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSS
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCC
Confidence            487888997322  33579999999999964

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=85.76  E-value=3.5  Score=37.78  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             eccCCcc-eEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGGFG-SVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~fG-~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      +..|.-+ .||+-... ++..+.+|.-...    ....+.+|..+|+.+. +--+-++++.....+..++|||++++.++
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~  107 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA  107 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEETH----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCCC----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence            4445444 68887653 4567888875432    3466888999998874 33466788888888899999999998877


Q ss_pred             hhhh
Q 011189          474 FHHI  477 (491)
Q Consensus       474 ~~~L  477 (491)
                      .+..
T Consensus       108 ~~~~  111 (272)
T 4gkh_A          108 FQVL  111 (272)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6543

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=85.73  E-value=0.11  Score=52.76  Aligned_cols=61  Identities=10%  Similarity=0.096  Sum_probs=17.5

Q ss_pred             ceeccCCcceEEEEEEcC-CcEEEE------Eeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC
Q 011189          395 NFLGEGGFGSVYRGVLSD-DTQVAV------KKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT  458 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~-~~~vav------K~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  458 (491)
                      +.||   ||.||+|.+.. ...|||      |..+... ......+|.+|..++.+++|+|+++.+++....
T Consensus       148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~~  216 (463)
T 3cxl_A          148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT  216 (463)
T ss_dssp             TTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEEC
T ss_pred             ccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEee
Confidence            4565   99999999854 357888      6665432 223346799999999999999999998877543

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=84.83  E-value=0.5  Score=50.20  Aligned_cols=61  Identities=28%  Similarity=0.681  Sum_probs=41.0

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCc-ccCccccccCCCCc--cCcCcCCCCCccccC-CCCCCCCCcc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGC-HDIDECKEKERYHC--EGTCKNTFGNYTCDC-PIGMHGDGKV  323 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC-~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C-~~g~~~~~~~  323 (491)
                      .|..++.|.+      ++|.|.+||.|.--. | .++++|.......|  +|.|.+    ..|.| +.||.|....
T Consensus       535 ~C~~~G~C~~------g~C~C~~Gy~G~~Ce-C~~~~~~C~~~~g~~C~~~G~C~~----g~C~C~~~Gy~G~~Ce  599 (690)
T 3fcs_B          535 MCSGHGQCSC------GDCLCDSDWTGYYCN-CTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSYGDTCE  599 (690)
T ss_dssp             BGGGSEEEET------TEEEECTTEESSSSC-EECCCTTTBCTTSSBTSSSCEEET----TEEECCSTTCBSTTSC
T ss_pred             CCCCCCEecC------CeeECcCCCcCCCCc-cCCCCCcccCCCCCCCCCCCEEeC----CEEECCCCCccCCCcC
Confidence            4555667753      789999999998533 3 24667764333456  456754    38999 8999887543

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=84.80  E-value=0.28  Score=39.20  Aligned_cols=23  Identities=39%  Similarity=0.973  Sum_probs=20.4

Q ss_pred             cCcCcCCCCCccccCCCCCCCCC
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      ++.|.++.++|.|.|+.||.++.
T Consensus        25 ~g~C~~~~~~y~C~C~~G~~G~~   47 (114)
T 1aut_L           25 HGTCIDGIGSFSCDCRSGWEGRF   47 (114)
T ss_dssp             SEEECCCSSCCCEEECTTEESTT
T ss_pred             cCCCCCCCCCcEeeCCCCCcCCC
Confidence            56899999999999999998864

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=83.93  E-value=0.46  Score=31.89  Aligned_cols=26  Identities=31%  Similarity=0.812  Sum_probs=20.0

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPY  281 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~  281 (491)
                      .|.  ..|.+..  ++|+|.|++||.+++.
T Consensus        21 ~C~--~~C~n~~--Gsy~C~C~~Gy~~~~d   46 (53)
T 1apq_A           21 QCQ--HLCHNYV--GGYFCSCRPGYELQED   46 (53)
T ss_dssp             TTS--SEEEEET--TEEEEECSTTCEECTT
T ss_pred             CCC--CEeECCC--CCeEEECCCCCeECCC
Confidence            564  4787755  4899999999998654

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=83.87  E-value=0.88  Score=35.25  Aligned_cols=64  Identities=20%  Similarity=0.360  Sum_probs=42.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCcc-ccccCCCCc--cCcCcCCC-CCccccCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDE-CKEKERYHC--EGTCKNTF-GNYTCDCPIGMH  318 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~-C~~~~~~~c--~~~C~n~~-g~~~C~C~~g~~  318 (491)
                      .|..|+.|..... +...|.|..||.++.. .|..++. |.. ++..|  ...|..+. ....|.|..++.
T Consensus        17 ~Cp~NA~C~r~~~-G~e~CrCl~gY~~dg~-~Cv~~Np~C~~-nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           17 NVPENAACYRYLD-GTEEWRCLLGFKEVGG-KCVPASITCEE-NNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             CCCTTEEEEECTT-SCEEEEECTTEEECSS-SEEECCCCTTS-GGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             CCCCCCCeEECCC-CCEeEEEECCeeccCC-EEEECCcchhh-cCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            5778999976444 3568999999999743 5776666 532 23345  34565553 566888877753

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=83.19  E-value=0.24  Score=34.52  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=21.0

Q ss_pred             CCccCcCcCCC-CCccccCCCCCCCC
Q 011189          296 YHCEGTCKNTF-GNYTCDCPIGMHGD  320 (491)
Q Consensus       296 ~~c~~~C~n~~-g~~~C~C~~g~~~~  320 (491)
                      ..|...|.|++ |+|.|.|+.||...
T Consensus         7 ggC~~~C~n~~~gs~~C~C~~Gy~L~   32 (59)
T 2wph_E            7 GRCEQFCKNSADNKVVCSCTEGYRLA   32 (59)
T ss_dssp             GGCSSEEEECSTTCEEEECCTTEEEC
T ss_pred             CCcCCEeEeCCCCCEEeeCCCCcEEC
Confidence            45778899999 69999999999743

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=83.11  E-value=0.23  Score=43.88  Aligned_cols=35  Identities=40%  Similarity=0.993  Sum_probs=0.0

Q ss_pred             CcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCC
Q 011189          283 GCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       283 gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      .|.++++|..   .+|  ++.|.++.++|.|.|+.||.|.
T Consensus        38 ~c~dideC~~---~pC~ngg~C~n~~g~y~C~C~~Gf~G~   74 (195)
T 1nfu_B           38 KYKDGDQCET---SPCQNQGKCKDGLGEYTCTCLEGFEGK   74 (195)
T ss_dssp             ----------------------------------------
T ss_pred             cCCCCcccCC---CCCCCCCEeECCCCCeeEeCCCCceec
Confidence            6888999963   356  4699999999999999999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=82.88  E-value=0.36  Score=46.92  Aligned_cols=32  Identities=31%  Similarity=0.733  Sum_probs=18.9

Q ss_pred             CccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          287 IDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       287 ~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      ++||.  ....|...|.|+.|+|.|.|+.||...
T Consensus         1 i~ec~--~~~~C~~~C~n~~g~~~C~C~~g~~l~   32 (349)
T 3v64_C            1 VNECA--EEGYCSQGCTNSEGAFQCWCEAGYELR   32 (349)
T ss_dssp             ----------CCSSEECCC---CCEECCTTEEEC
T ss_pred             CcccC--CCCCCcCeeecCCCCeEEECCCCccCC
Confidence            46886  346799999999999999999999743

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=82.53  E-value=1.5  Score=42.05  Aligned_cols=53  Identities=36%  Similarity=0.874  Sum_probs=29.9

Q ss_pred             CCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          253 CGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       253 C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |..++.|.+     .+.|.|++||.|..   |.. +.|.    ..|  ++.|.+   .+.|.|++||.++.
T Consensus       187 C~~~G~C~~-----~~~C~C~~G~~G~~---C~~-~~C~----~~C~~~G~C~~---~~~C~C~~G~~G~~  241 (324)
T 2ygq_A          187 CMNGGLCVT-----PGFCICPPGFYGVN---CDK-ANCS----TTCFNGGTCFY---PGKCICPPGLEGEQ  241 (324)
T ss_dssp             CCTTCEECS-----SCCEECCTTCBTTT---TCB-CCCS----SCCCSSCCBSC---SSCBCCCTTCCTTT
T ss_pred             CCCCCEEcC-----CCEEeCCCCccCCC---ccc-CcCC----CCCCCCCeeCC---CCeeeCCCCccCCC
Confidence            445556642     35677777777653   321 2232    123  355654   36788888888763

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=82.47  E-value=0.46  Score=50.51  Aligned_cols=57  Identities=25%  Similarity=0.546  Sum_probs=39.3

Q ss_pred             CCCCCeeecCCCCCCeeeeeC----CCCccCCCCCcc-cCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCCc
Q 011189          253 CGDNTNCDYSENGEGYRCLCK----PGFQGNPYLGCH-DIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       253 C~~~~~C~~~~~~~g~~C~C~----~G~~gn~~~gC~-~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      |..++.|.      .+.|.|.    +||.|.-   |. ++++|.......|  +|.|.+    +.|.|+.||.|...
T Consensus       495 Cs~~G~C~------~g~C~C~~~~~~Gy~G~~---Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~C  558 (690)
T 3fcs_B          495 CSQRGECL------CGQCVCHSSDFGKITGKY---CECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYC  558 (690)
T ss_dssp             GGGSEEEC------SSSEEECCCSSCCCBSTT---SCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSS
T ss_pred             CCCCCEEE------CCeeEeecCCCCCeeCCC---cCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCC
Confidence            44455554      2589999    9999865   53 4567764333456  567765    78999999998743

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=82.15  E-value=0.045  Score=50.77  Aligned_cols=68  Identities=18%  Similarity=0.179  Sum_probs=43.2

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCC----C-----------ccc------Ccccc---ccCCCCc--cCcCcC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL----G-----------CHD------IDECK---EKERYHC--EGTCKN  304 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~----g-----------C~~------~~~C~---~~~~~~c--~~~C~n  304 (491)
                      ..|..++.|.+..  .+|+|.|++||+|..-.    .           |+.      -..|.   .....+|  .+.|.+
T Consensus       105 ~pC~ngG~C~~~~--~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C~d  182 (267)
T 4fbr_A          105 IKSNDGGKTLTGT--TTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLS  182 (267)
T ss_dssp             EECSSTTSEEEEE--EEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSEEE
T ss_pred             CCCCCCCEEecCC--ccEEeeCCCCccccCCCCCcccccccCCcCCccccCCcceecccccccccccCCCCCCCCCEeeC
Confidence            3577788888755  48999999999984321    1           111      00010   0001123  577888


Q ss_pred             CCCCccccCCCCCCCC
Q 011189          305 TFGNYTCDCPIGMHGD  320 (491)
Q Consensus       305 ~~g~~~C~C~~g~~~~  320 (491)
                      -.++|+|.||.||.+.
T Consensus       183 g~~~y~C~Cp~Gf~G~  198 (267)
T 4fbr_A          183 GTMTYNGEGPIGFRGT  198 (267)
T ss_dssp             EEEEETTSCCEEEEEE
T ss_pred             CCCCeEEeCCCCcccc
Confidence            8899999999999875

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=81.86  E-value=0.5  Score=40.68  Aligned_cols=54  Identities=26%  Similarity=0.626  Sum_probs=34.9

Q ss_pred             CC-CCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          253 CG-DNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       253 C~-~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |. .++.|.+     .|.|.|++||.|..-.-|.....|.       ++.|.   +++.|.|++||.+..
T Consensus        72 C~~~~g~C~~-----~~~C~C~~G~~G~~C~~C~~~~~C~-------~g~C~---~~~~C~C~~G~~G~~  126 (169)
T 2vj2_A           72 CSPKHGSCKL-----PGDCRCQYGWQGLYCDKCIPHPGCV-------HGICN---EPWQCLCETNWGGQL  126 (169)
T ss_dssp             CCTTTEECSS-----TTCCEECTTEESSSSCEECCCTTCS-------SEECS---STTCCEECTTEETTT
T ss_pred             CCCCCcccCC-----CCeeECCCCCCCCCcccCCCCCCCC-------CCCcC---CCCEEeCCCCCCCCc
Confidence            54 4566753     4789999999987533222211121       34565   578999999998763

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=80.80  E-value=1.2  Score=42.82  Aligned_cols=54  Identities=31%  Similarity=0.781  Sum_probs=38.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|..++.|.+     .+.|.|++||.|..   |.. +.|..    .|  ++.|.+   .+.|.|++||.|..
T Consensus       154 ~C~~~G~C~~-----~~~C~C~~G~~G~~---C~~-~~C~~----~C~~~G~C~~---~~~C~C~~G~~G~~  209 (324)
T 2ygq_A          154 GCRNGGFCNE-----RRICECPDGFHGPH---CEK-ALCTP----RCMNGGLCVT---PGFCICPPGFYGVN  209 (324)
T ss_dssp             CCCSSCEECT-----TSCEECCTTEESSS---SCE-ESSSS----CCCTTCEECS---SCCEECCTTCBTTT
T ss_pred             CCCCCCEECC-----CCeEECCCCCcCCC---CCC-CCCCC----CCCCCCEEcC---CCEEeCCCCccCCC
Confidence            5778888963     47899999999964   442 34532    34  466755   47899999999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=80.23  E-value=0.99  Score=49.01  Aligned_cols=59  Identities=20%  Similarity=0.426  Sum_probs=38.3

Q ss_pred             CeeecCCCCCCeeeeeCCCCccCCCCCcccCccccccCCCCccCcCcCCCCCccccCCCCCC
Q 011189          257 TNCDYSENGEGYRCLCKPGFQGNPYLGCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMH  318 (491)
Q Consensus       257 ~~C~~~~~~~g~~C~C~~G~~gn~~~gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~  318 (491)
                      +.|.+....-...+.|.+|+..+.. .| ++++|.. ....|...|.|+.++|.|.|+.||.
T Consensus       284 G~Ci~~~~~Cd~~~dC~dgsDe~~~-~C-~~~~C~~-~~~~C~~~C~~~~~~y~C~C~~Gy~  342 (791)
T 3m0c_C          284 GECITLDKVCNMARDCRDWSDEPIK-EC-GTNECLD-NNGGCSHVCNDLKIGYECLCPDGFQ  342 (791)
T ss_dssp             SCCCCSSCCSCSSCCSSSSCSCCCT-TB-SCCSTTT-GGGGCSSEEEECSBSEEEECCTTCE
T ss_pred             CcccccccccCCccccccccCcccc-cc-ccccccc-cccCccccccCCCCCcccCCCCCCc
Confidence            4555433222345677777655321 24 3567753 2346778999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	491
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-21
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-20
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-20
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-20
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-20
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-20
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	8e-20
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-19
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-18
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-18
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-18
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-18
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-18
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-18
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	8e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-18
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-17
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-17
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-17
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	5e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-16
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-16
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-16
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-16
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-16
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	3e-16
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-16
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-15
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-15
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	6e-15
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-15
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-14
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-14
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-14
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-13
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-13
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	7e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-12
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-12
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-12
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-11
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-11
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	8e-11
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-10
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-08
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	2e-08
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	2e-07
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	3e-07
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	9e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	9e-07
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	3e-06
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	4e-06
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	1e-05
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	1e-05
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	2e-05
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	2e-05
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	4e-05
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	5e-05
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	5e-04
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	6e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	7e-04
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	0.001

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 3e-21
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           +       LG G FG V+ G  +  T+VAVK  K+         F  E  ++ Q+ H+ +
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP--DAFLAEANLMKQLQHQRL 70

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           V++  +  Q  +  ++ E++ NG+L   + + S   L   K++
Sbjct: 71  VRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKLL 112

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 1e-20
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           K       +G+G FG V  G      +VAVK  K       +Q F  E  +++Q+ H N+
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK---NDATAQAFLAEASVMTQLRHSNL 62

Query: 449 VKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
           V++LG+ ++ K  L +V E+++ G+L  ++ S+   VL
Sbjct: 63  VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 100

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 2e-20
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           K+      LG G FG V  G       VA+K  KE        EF  E  ++  ++H+ +
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE--DEFIEEAKVMMNLSHEKL 61

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           V++ G+C + +   ++ E+++NG L +++   
Sbjct: 62  VQLYGVCTKQRPIFIITEYMANGCLLNYLREM 93

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 2e-20
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
                   +G G FG V+ G   +  +VA+K  +E       ++F  E  ++ +++H  +
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEVMMKLSHPKL 62

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           V++ G+CL+     LV+EF+ +G L  ++ ++
Sbjct: 63  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ 94

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.7 bits (219), Expect = 4e-20
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 379 FSEAELIKATKNYDKS---------NFLGEGGFGSVYRGVLSDDTQ----VAVKKPKEAD 425
           F+  +  +A + + K            +G G FG V  G L    +    VA+K  K   
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 426 KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
             +  ++F  E  I+ Q +H NV+ + G+  ++   +++ EF+ NG+L   +   
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQN 121

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 4e-20
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKNV 448
                  +G G FG+VY+G    D  VAVK     A   +  Q F++E+G++ +  H N+
Sbjct: 9   QITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 66

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           +  +G     ++  +V ++    +L+HH+H   ++
Sbjct: 67  LLFMGYSTAPQL-AIVTQWCEGSSLYHHLHIIETK 100

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 8e-20
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 383 ELIKATKNYDKSNF-LGEGGFGSVYRGVL---SDDTQVAVKKPKEADKIRVSQEFQHEMG 438
           +L     N   ++  LG G FGSV +GV         VA+K  K+  +   ++E   E  
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61

Query: 439 IVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           I+ Q+++  +V+++G+C Q +  +LV E    G L   +  K  ++
Sbjct: 62  IMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEI 106

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 1e-19
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           +++K + LG G  G V++         +A K      K  +  +   E+ ++ + N   +
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           V   G         +  E +  G+L   +    
Sbjct: 67  VGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG 99

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.4 bits (216), Expect = 1e-19
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 379 FSEAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEM 437
           + +AE I+    YD  + LG G F  V           VA+K   +          ++E+
Sbjct: 1   WKQAEDIR--DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEI 58

Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            ++ +I H N+V +  +        L+ + VS G LF  I  K
Sbjct: 59  AVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK 101

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK--PKEADKIRVSQEFQHEMGIVSQIN 444
            K +     +G G FG+VY    + +   VA+KK            Q+   E+  + ++ 
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           H N ++  G  L+     LV E+            K
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK 109

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 83.6 bits (206), Expect = 3e-18
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           +YD    LG G FG V+R    +     A K      +    +  + E+  +S + H  +
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDK-ETVRKEIQTMSVLRHPTL 85

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           V +          +++YEF+S G LF  +  +
Sbjct: 86  VNLHDAFEDDNEMVMIYEFMSGGELFEKVADE 117

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 3e-18
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
           +++D    LGEG +G V   V    +  VAVK       +   +  + E+ I   +NH+N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           VVK  G   +  +  L  E+ S G LF  I   
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 97

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 3e-18
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 394 SNFLGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           +  +G G FG VY G L D+       AVK       I    +F  E  I+   +H NV+
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 450 KILGLCLQTK-VPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
            +LG+CL+++  PL+V  ++ +G L + I +++        I
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLI 133

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 83.6 bits (206), Expect = 3e-18
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
            YD    LG G FG V+R V  +       K       +      ++E+ I++Q++H  +
Sbjct: 30  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-KYTVKNEISIMNQLHHPKL 88

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           + +          +L+ EF+S G LF  I ++
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAE 120

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 4e-18
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ 442
           +    S  LG+G FG VY GV         +T+VA+K   EA  +R   EF +E  ++ +
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
            N  +VV++LG+  Q +  L++ E ++ G L  ++ 
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 115

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 6e-18
 Identities = 18/105 (17%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK 446
            K Y +   +G+G  G+VY  + ++   +VA+++     + +  +   +E+ ++ +  + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK-ELIINEILVMRENKNP 77

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           N+V  L   L      +V E+++ G+L   +        +   + 
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVC 122

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 8e-18
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 386 KATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQ 442
           K  +++     LGEG F +V     L+   + A+K  + +   K         E  ++S+
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           ++H   VK+       +       +  NG L  +I 
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR 100

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 9e-18
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 390 NYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
                  LG G FG V                VAVK  K +  +   +    E+ ++S +
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83

Query: 444 -NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
            NH N+V +LG C      L++ E+   G L + +  K    +
Sbjct: 84  GNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFI 126

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 1e-17
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ----VAVKKPKEADKIRVSQEFQHEMGIVSQINH 445
             +    +GEG FG V++G+          VA+K  K      V ++F  E   + Q +H
Sbjct: 8   RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 67

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            ++VK++G+  +  V  ++ E  + G L   +  +
Sbjct: 68  PHIVKLIGVITENPV-WIIMELCTLGELRSFLQVR 101

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.4 bits (200), Expect = 1e-17
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 390 NYDKSNFLGEGGFGSVYRGVL------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
           N +    +GEG FG V++            T VAVK  KE     +  +FQ E  ++++ 
Sbjct: 14  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF 73

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           ++ N+VK+LG+C   K   L++E+++ G L   + S S   +
Sbjct: 74  DNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTV 115

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 1e-17
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDD------TQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
           N +    LG G FG V               QVAVK  KE       +    E+ +++Q+
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97

Query: 444 -NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            +H+N+V +LG C  +    L++E+   G L +++ SK
Sbjct: 98  GSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 135

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 1e-17
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDT----QVAVK--KPKEADKIRVSQEFQHEMGIVSQ 442
           K+      LG+G FG V RG     +     VAVK  KP    +     +F  E+  +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 443 INHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTW 488
           ++H+N++++ G+ L   +  +V E    G+L   +       L   
Sbjct: 68  LDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGHFLLGT 112

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 3e-17
 Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           ++      LG+G FG V+ G  +  T+VA+K  K        + F  E  ++ ++ H+ +
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP--EAFLQEAQVMKKLRHEKL 74

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQ 483
           V++  +  +  +  +V E++S G+L   +  ++ +
Sbjct: 75  VQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGK 108

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 5e-17
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 397 LGEGGFGSVYRGVLSD---DTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKNVVKIL 452
           LG G FG+V +G          VAVK    EA+   +  E   E  ++ Q+++  +V+++
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 74

Query: 453 GLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           G+C + +  +LV E    G L  ++   
Sbjct: 75  GIC-EAESWMLVMEMAELGPLNKYLQQN 101

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 78.2 bits (192), Expect = 1e-16
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQIN 444
           +  Y+    LG GG   V+    L     VAVK  +   A        F+ E    + +N
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 445 HKNVVKILGLCL----QTKVPLLVYEFVSNGTLFHHIH 478
           H  +V +            +P +V E+V   TL   +H
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH 103

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (191), Expect = 1e-16
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVSQEFQHEMGIVSQINHKN 447
            +    + LG G +G VY GV    +  VAVK  KE       +EF  E  ++ +I H N
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAVMKEIKHPN 74

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
           +V++LG+C +     ++ EF++ G L  ++   + Q +
Sbjct: 75  LVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 112

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 1e-16
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
           +Y+    +G G +G   +    SD   +  K+    +      Q    E+ ++ ++ H N
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 448 VVKILGLCLQT--KVPLLVYEFVSNGTLFHHIHSKSSQ 483
           +V+     +        +V E+   G L   I   + +
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKE 102

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 1e-16
 Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 383 ELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVSQEFQHEM 437
            ++K T  + K   LG G FG+VY+G+   + +     VA+K+ +EA   + ++E   E 
Sbjct: 4   RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 438 GIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            +++ +++ +V ++LG+C  T    L+ + +  G L  ++   
Sbjct: 63  YVMASVDNPHVCRLLGIC-LTSTVQLITQLMPFGCLLDYVREH 104

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINH 445
           ++++    LG+G FG+VY          +A+K     + +K  V  + + E+ I S + H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
            N++++ G         L+ E+   GT++  +   S
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLS 101

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVLSDDTQ---VAVKKPKEADKIRVSQEFQHEMGIVSQI-N 444
            +    + +GEG FG V +  +  D      A+K+ KE       ++F  E+ ++ ++ +
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           H N++ +LG C       L  E+  +G L   +   
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKS 105

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
            Y  +  LG G FG V+R V  S       K  K     +     + E+ I++   H+N+
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ--VLVKKEISILNIARHRNI 63

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQV 484
           + +       +  ++++EF+S   +F  I++ + ++
Sbjct: 64  LHLHESFESMEELVMIFEFISGLDIFERINTSAFEL 99

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (190), Expect = 4e-16
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDD-TQVAVK-----KPKEADKIRVSQEFQHEMGIVSQI 443
           ++     +G GGFG VY    +D     A+K     + K      ++   +  + +VS  
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           +   +V +            + + ++ G L +H+           +  
Sbjct: 65  DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFY 112

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQ-----VAVKKPKEADKIRVSQEFQHEMGIVSQIN 444
              +   +G G FG VY+G+L   +      VA+K  K     +   +F  E GI+ Q +
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS 67

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           H N++++ G+  + K  +++ E++ NG L   +  K
Sbjct: 68  HHNIIRLEGVISKYKPMMIITEYMENGALDKFLREK 103

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 6e-16
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 385 IKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
           +     ++    LG+G FG VY+          A K      +  + +++  E+ I++  
Sbjct: 8   LNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEEL-EDYMVEIDILASC 66

Query: 444 NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKS 481
           +H N+VK+L          ++ EF + G +   +    
Sbjct: 67  DHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE 104

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 1e-15
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCL 456
           +G+G FG V+RG      +VAVK     ++   S   + E+     + H+N++  +    
Sbjct: 11  IGKGRFGEVWRGKW-RGEEVAVKIFSSREER--SWFREAEIYQTVMLRHENILGFIAADN 67

Query: 457 Q----TKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           +         LV ++  +G+LF +++  +  V    K+
Sbjct: 68  KDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKL 105

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 3e-15
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVSQIN 444
           YD    LG G F  V +    S   Q A K     + K + +    ++ + E+ I+ +I 
Sbjct: 12  YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 71

Query: 445 HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           H NV+ +  +       +L+ E V+ G LF  +  K
Sbjct: 72  HPNVITLHEVYENKTDVILILELVAGGELFDFLAEK 107

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (178), Expect = 6e-15
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 397 LGEGGFGSVYRGVLSDDTQ-VAVKKPKEADKIRVS-QEFQHEMGIVSQINHKNVVKILGL 454
           +G G F +VY+G+ ++ T  VA  + ++    +   Q F+ E  ++  + H N+V+    
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 76

Query: 455 CLQT----KVPLLVYEFVSNGTLFHHIHSK 480
              T    K  +LV E +++GTL  ++   
Sbjct: 77  WESTVKGKKCIVLVTELMTSGTLKTYLKRF 106

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 6e-15
 Identities = 17/98 (17%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 388 TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHK 446
              Y   +++GEG +G V       +  +VA+KK    +     Q    E+ I+ +  H+
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 447 NVVKILGLC----LQTKVPLLVYEFVSNGTLFHHIHSK 480
           N++ I  +     ++    + +   +    L+  + ++
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ 104

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 72.2 bits (176), Expect = 1e-14
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKNV 448
            Y     +GEG +G VY+   +     A+KK   E +   +      E+ I+ ++ H N+
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62

Query: 449 VKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
           VK+  +    K  +LV+E +           +
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE 94

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 390 NYDKSNFLGEGGFGSVYRGVL--------SDDTQVAVKKPKEADKIRVSQEFQHEMGIVS 441
                  LGEG FG V             +  T+VAVK  K     +   +   EM ++ 
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 442 QI-NHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLK 486
            I  HKN++ +LG C Q     ++ E+ S G L  ++ ++    L+
Sbjct: 74  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLE 119

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 17/106 (16%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINH 445
           +++     LG G FG V+      +    A+K  K +   +++  +    E  ++S + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
             ++++ G     +   ++ +++  G LF  +           K  
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFY 109

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 3e-14
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 395 NFLGEGGFGSVYRGV-LSDDTQVAVKK----PKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           +FLGEG F +VY+    + +  VA+KK     +   K  +++    E+ ++ +++H N++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            +L          LV++F+          +         K  
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAY 105

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.7 bits (170), Expect = 7e-14
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQE--------FQHEMGIV 440
           NY+    LG G    V R +      + AVK          S E           E+ I+
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 441 SQIN-HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            +++ H N++++           LV++ +  G LF ++  K
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK 104

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 9e-14
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 397 LGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGL 454
           LG G  G V +        + A+K       ++   + + E+ +  +     ++V+I+ +
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKM------LQDCPKARREVELHWRASQCPHIVRIVDV 73

Query: 455 C----LQTKVPLLVYEFVSNGTLFHHIHSKSSQVL 485
                   K  L+V E +  G LF  I  +  Q  
Sbjct: 74  YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAF 108

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 390 NYDKSNFLGEGGFGSVYRGVLSDD-TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNV 448
           +Y  +  +G G FG VY+  L D    VA+KK  +  +         E+ I+ +++H N+
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF-----KNRELQIMRKLDHCNI 75

Query: 449 VKILGLCLQTKVP------LLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
           V++      +          LV ++V         H   ++       V
Sbjct: 76  VRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYV 124

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK---KPKEADKIRVSQEFQHEMGIVSQINH 445
           ++     LG+G FG V+       +   A+K   K        V      +  +     H
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
             +  +       +    V E+++ G L +HI S 
Sbjct: 63  PFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC 97

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 7e-13
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 381 EAELIKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMG 438
           E         Y+K   +G+G FG V++        +VA+KK   E +K         E+ 
Sbjct: 2   ECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIK 61

Query: 439 IVSQINHKNVVKILGLCLQTKVP--------LLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
           I+  + H+NVV ++ +C     P         LV++F  +       +      L   K 
Sbjct: 62  ILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKR 121

Query: 491 V 491
           V
Sbjct: 122 V 122

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHKN 447
           N+ K   +GEG +G VY+         VA+KK   + +   V      E+ ++ ++NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 448 VVKILGLCLQTKVPLLVYEFVSNGTLFHHIHS 479
           +VK+L +        LV+EF+          S
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDAS 94

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 2e-12
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHK 446
           + Y+K   +GEG +G+V++         VA+K+   + D   V      E+ ++ ++ HK
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWK 489
           N+V++  +    K   LV+EF       +          +  K
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVK 104

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 2e-12
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 390 NYDKSNFLGEGGFGSVYRGV------LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
                  LG G FG V           +    VAVK  KE       +    E+ I+  I
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 73

Query: 444 NH-KNVVKILGLCLQTKVPL-LVYEFVSNGTLFHHIHSKSSQVL 485
            H  NVV +LG C +   PL ++ EF   G L  ++ SK ++ +
Sbjct: 74  GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 117

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 64.9 bits (157), Expect = 4e-12
 Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKN 447
           +Y     LG G +  V+  + ++++ +V VK  K   K    ++ + E+ I+  +    N
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK----KKIKREIKILENLRGGPN 91

Query: 448 VVKILGLCLQ--TKVPLLVYEFVSNGTLFHHIHSKSSQVLKTW 488
           ++ +  +     ++ P LV+E V+N        + +   ++ +
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFY 134

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 5e-12
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVK-----KPKEADKIRVSQEFQHEMGIVSQIN 444
           Y     LG GGFGSVY G+ +SD+  VA+K     +  +  ++        E+ ++ +++
Sbjct: 6   YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS 65

Query: 445 --HKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
                V+++L    +    +L+ E            ++
Sbjct: 66  SGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITE 103

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 6e-12
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 379 FSEAELIKAT----KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQE 432
           F   E+ K        Y     +G G +G+V   V      +VA+KK  +       ++ 
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 433 FQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
              E+ ++  + H+NV+ +L +    +      +F            K
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGK 111

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 1e-11
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 379 FSEAELIKA----TKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQE 432
           F   EL K      + Y   + +G G +GSV          +VAVKK  +    I  ++ 
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 63

Query: 433 FQHEMGIVSQINHKNVVKILGLC-----LQTKVPLLVYEFVSNGTLFHHIHSK 480
              E+ ++  + H+NV+ +L +      L+    + +   +    L + +  +
Sbjct: 64  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ 116

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 390 NYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINHK 446
            +D+   LG G FG V            A+K    ++  K++  +   +E  I+  +N  
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
            +VK+           +V E+V+ G +F H+   
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI 135

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 389 KNYDKSNFLGEGGFGSVYRGVL----SDDTQVAVK---KPKEADKIRVSQEFQHEMGIVS 441
           +N++    LG G +G V+              A+K   K     K + ++  + E  ++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 442 QINHK-NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKI 490
            I     +V +           L+ ++++ G LF H+  +        +I
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQI 133

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 2e-11
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVK--KPKEADKIRVSQEFQHEMGIVSQINH 445
            ++D    LG+G FG V      +     A+K  + +             E  ++    H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 446 KNVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSK 480
             +  +            V E+ + G LF H+  +
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE 99

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 3e-11
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 385 IKATKNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI 443
           ++    Y     +G G FG +Y G  ++   +VA+K      K     +   E  I   +
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMM 59

Query: 444 NHKNVVKILGLCLQTK-VPLLVYEFVSNGTLFHHIHSK 480
                +  +  C       ++V E +            
Sbjct: 60  QGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCS 97

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 8e-11
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQINHK 446
           K Y     +G G  G V        D  VA+KK  +       ++    E+ ++  +NHK
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 447 NVVKILGLCLQTKV------PLLVYEFVSNGTLFHHIHSKSSQVLKTW 488
           N++ +L +    K         LV E +              + +   
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYL 124

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 8e-10
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 386 KATKNYDKSNFLGEGGFGSVYRG--VLSDDTQVAVKK-PKEADKIRVSQEFQHEMGIVSQ 442
           +A + Y+    +GEG +G V++   + +    VA+K+   +  +  +      E+ ++  
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 443 I---NHKNVVKILGLCLQTKVP-----LLVYEFVSNGTLFHHIHSKS 481
           +    H NVV++  +C  ++        LV+E V      +      
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPE 110

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 389 KNYDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH-K 446
            +Y     +GEG FG ++ G  L ++ QVA+K          + + + E      +    
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD---APQLRDEYRTYKLLAGCT 61

Query: 447 NVVKILGLCLQTKVPLLVYEFVSNGTLFHHIHSKSSQVLKTWKIV 491
            +  +     +    +LV + +                +KT  + 
Sbjct: 62  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMA 106

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 391 YDKSNFLGEGGFGSVYRGV-LSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVV 449
           Y     LG G F +V+    + ++T VA+K  +        +  + E+ ++ ++N  +  
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYT--EAAEDEIKLLQRVNDADNT 72

Query: 450 KILGLCLQTKVPLLVYEFVSNGTLFHHIH 478
           K   +     + LL +         H + 
Sbjct: 73  KEDSMGANHILKLLDHFNHKGPNGVHVVM 101

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 284 CHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQ 326
             D+DECKE       G C NT G+Y C+CP G    G   C 
Sbjct: 2   AVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGN-ECV 42

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG 321
           DIDEC+        G C NT G++ C C  G     
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
           DIDEC+E       G C NTFG++ C CP G  ++ D +  C 
Sbjct: 2   DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR-VCD 43

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 9e-07
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIG--MHGDGK 322
           DIDEC+        G C NT G+Y C+CP G  +  +  
Sbjct: 1   DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNIS 39

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 397 LGEGGFGSVYRGVLSDDTQVAVKKPKEA---------DKIRVSQEFQHEMGIVSQINHKN 447
           +GEG   +V+        +  VK  K            +      F       ++   + 
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 448 VVKILGLCLQTKV----PLLVYEFVSNGTLFHHIHSKSSQVLK 486
           + K+ GL +          ++ E +    L+        +VL 
Sbjct: 68  LQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLD 110

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG 321
           DIDEC+      C G C N  G + C C       G
Sbjct: 1   DIDECENGG--FCSGVCHNLPGTFECICGPDSALAG 34

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 10/50 (20%)

Query: 286 DIDECKE-------KERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
           D+DEC           +  C+  C N  G Y C C  G  +  D   SCQ
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH-SCQ 51

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 287 IDECKEK--ERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQG 327
           +DEC+    +   C+  C N  G Y C C +G  +H +   +C  
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKH-TCSA 44

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG 321
           D++EC +       G C NT G+Y CDCP     + 
Sbjct: 2   DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNP 36

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 287 IDECKEK--ERYHCEGTCKNTFGNYTCDCPIG--MHGDGKVSCQ 326
           IDEC+    E   C+  C N  G + C C  G  +H + + +C 
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKR-TCS 43

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 287 IDECKEKERYHCEGTCKNTFGNYTCDCPIGM--HGDGKVSCQ 326
           IDEC++     C   C N  G Y C C  G       K +C+
Sbjct: 1   IDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDPHTK-ACK 39

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 288 DECKEKERYHCEGTCKNTFGNYTCDCPIG--MHGDGK 322
           +EC +     C   C N  G Y C CP    +H D K
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMK 37

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 286 DIDECKEKERY-HCEGTCKNTFGNYTCDCPIGMHGD 320
           D+DEC          G C NT G++ C C  G  G 
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           D D+C+     +  G+CK+   +Y C CP G  G 
Sbjct: 2   DGDQCESNPCLN-GGSCKDDINSYECWCPFGFEGK 35

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 288 DECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGKVSCQ 326
           +EC +     C   C +    Y C CP G     +  C+
Sbjct: 3   NECLD-NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 40

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD 320
           D D+C      +  G+CK+   +Y C C     G 
Sbjct: 1   DGDQCASSPCQN-GGSCKDQLQSYICFCLPAFEGR 34

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 297 HCEGTCKNTFGNYTCDCPIGMHGDGKV 323
                C++    + C C     G+G+ 
Sbjct: 10  SVHAECRDYATGFCCRCVANYTGNGRQ 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	491
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.61
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.59
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.56
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.55
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.55
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.55
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.54
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.52
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.52
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.5
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.5
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.5
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.49
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.49
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.49
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.49
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.48
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.48
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.47
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.47
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.45
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.45
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.45
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.44
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.44
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.44
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.43
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.43
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.43
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.42
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.4
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.39
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.39
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.37
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.37
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.37
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.36
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.35
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.29
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.28
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.27
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.27
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.26
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.23
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.22
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.22
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.19
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.17
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.15
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.12
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.11
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.08
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.08
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.07
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.07
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	98.92
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	98.9
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.82
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.3
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.25
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.6
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.3
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.17
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.12
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.05
d1szba2	45	Mannose-binding protein associated serine protease	96.81
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	96.76
d1nt0a3	45	Mannose-binding protein associated serine protease	96.66
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.48
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.97
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	95.73
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	95.64
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	95.38
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	95.06
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	94.84
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	94.84
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	94.5
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.49
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	94.43
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.36
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	94.33
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.17
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	93.99
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	93.88
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	93.79
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	93.69
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	93.12
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.94
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	92.78
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.77
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	92.2
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.09
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	91.55
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	91.35
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.07
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	90.73
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	90.73
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	90.29
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	90.18
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	90.15
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	90.1
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	90.06
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	89.72
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	89.19
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	88.78
d1nt0a3	45	Mannose-binding protein associated serine protease	88.37
d1szba2	45	Mannose-binding protein associated serine protease	88.11
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	87.63
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	85.76
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	85.14
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	84.92
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	84.85
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	84.23
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	83.61
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	80.61
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	80.35

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.1e-16  Score=145.97  Aligned_cols=97  Identities=25%  Similarity=0.457  Sum_probs=84.3

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|+..+.||+|+||+||+|.+.+++.||||+++....  ..++|.+|+.++++++|||||+++|++...+..+|||||+
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC--cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            45777789999999999999998888999999976543  3478999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCCCCcccccc
Q 011189          469 SNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       469 ~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ++|+|.++++....  .++|+
T Consensus        83 ~~g~L~~~l~~~~~--~~~~~  101 (263)
T d1sm2a_          83 EHGCLSDYLRTQRG--LFAAE  101 (263)
T ss_dssp             TTCBHHHHHHTTTT--CCCHH
T ss_pred             CCCcHHHHhhcccc--CCCHH
Confidence            99999999987643  34553

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=6.6e-16  Score=147.92  Aligned_cols=98  Identities=26%  Similarity=0.393  Sum_probs=81.9

Q ss_pred             cccccceeccCCcceEEEEEEcC-C---cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLSD-D---TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      +|+..++||+|+||+||+|.++. +   ..||||.+.........++|.+|+.+|++++|||||+++|++...+..+|||
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~  106 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIIT  106 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEE
Confidence            44556789999999999999743 2   3689999876655456688999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCCCCcccccc
Q 011189          466 EFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ||+++|+|.++++....  .++|.
T Consensus       107 Ey~~~g~L~~~~~~~~~--~l~~~  128 (299)
T d1jpaa_         107 EFMENGSLDSFLRQNDG--QFTVI  128 (299)
T ss_dssp             ECCTTEEHHHHHHTTTT--CSCHH
T ss_pred             EecCCCcceeeeccccC--CCCHH
Confidence            99999999999987543  35554

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.2e-15  Score=141.07  Aligned_cols=91  Identities=26%  Similarity=0.486  Sum_probs=81.8

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      ++|+..+.||+|+||+||+|++++++.||||.++....  ..++|.+|+.++++++|||||+++|++.+.+..++||||+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~--~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS--CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC--CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence            46788899999999999999998888999999876543  3478999999999999999999999999999999999999


Q ss_pred             CCCChhhhhccCC
Q 011189          469 SNGTLFHHIHSKS  481 (491)
Q Consensus       469 ~~GsL~~~L~~~~  481 (491)
                      ++|+|.+++....
T Consensus        82 ~~g~l~~~~~~~~   94 (258)
T d1k2pa_          82 ANGCLLNYLREMR   94 (258)
T ss_dssp             TTEEHHHHHHSGG
T ss_pred             CCCcHHHhhhccc
Confidence            9999999987654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.9e-15  Score=142.48  Aligned_cols=100  Identities=28%  Similarity=0.457  Sum_probs=84.8

Q ss_pred             hhccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..++|+..+.||+|+||+||+|.+. .++.||||+++....  ..++|.+|+.+|++++|||||+++|++.+.+..+|||
T Consensus        15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~--~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (287)
T d1opja_          15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   92 (287)
T ss_dssp             CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc--hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEe
Confidence            3467778889999999999999975 578999999876543  4578999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCCCCcccccc
Q 011189          466 EFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ||+++|+|.++|+.... ..++|.
T Consensus        93 E~~~~g~l~~~l~~~~~-~~~~~~  115 (287)
T d1opja_          93 EFMTYGNLLDYLRECNR-QEVSAV  115 (287)
T ss_dssp             ECCTTCBHHHHHHHSCT-TTSCHH
T ss_pred             ecccCcchHHHhhhccc-cchHHH
Confidence            99999999999986533 235543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.9e-15  Score=140.71  Aligned_cols=92  Identities=29%  Similarity=0.501  Sum_probs=76.8

Q ss_pred             ccccccc-eeccCCcceEEEEEEc---CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSN-FLGEGGFGSVYRGVLS---DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~-~lG~G~fG~V~~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      +++...+ +||+|+||+||+|.++   ++..||||.++........++|.+|+.+|++++|||||+++|++. .+..+||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~-~~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeec-cCeEEEE
Confidence            3455555 4999999999999864   345799999987655456788999999999999999999999885 4568999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++++..+
T Consensus        87 mE~~~~g~L~~~l~~~~  103 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKR  103 (285)
T ss_dssp             EECCTTEEHHHHHTTCT
T ss_pred             EEeCCCCcHHHHhhccc
Confidence            99999999999987654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-15  Score=142.60  Aligned_cols=98  Identities=24%  Similarity=0.448  Sum_probs=81.8

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|+..+.||+|+||+||+|.+++++.||||+++....  ..++|.+|+.++++++|||||+++|++. .+..+|||||
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey   88 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY   88 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC--CHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEe
Confidence            457778889999999999999998888999999976443  3477999999999999999999999874 4567999999


Q ss_pred             cCCCChhhhhccCCCCcccccc
Q 011189          468 VSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       468 ~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      +++|+|.++++.... ..++|+
T Consensus        89 ~~~g~L~~~~~~~~~-~~l~~~  109 (272)
T d1qpca_          89 MENGSLVDFLKTPSG-IKLTIN  109 (272)
T ss_dssp             CTTCBHHHHTTSHHH-HTCCHH
T ss_pred             CCCCcHHHHHhhcCC-CCCCHH
Confidence            999999998876432 235554

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=141.35  Aligned_cols=93  Identities=30%  Similarity=0.480  Sum_probs=78.9

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||+||+++.. +++.||||.+.........+.|.+|+.+|++++|||||++++++.+.+..+|||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            56888899999999999999964 68899999987654334456799999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccCC
Q 011189          468 VSNGTLFHHIHSKS  481 (491)
Q Consensus       468 ~~~GsL~~~L~~~~  481 (491)
                      +++|+|.++|+.+.
T Consensus        85 ~~gg~L~~~l~~~~   98 (271)
T d1nvra_          85 CSGGELFDRIEPDI   98 (271)
T ss_dssp             CTTEEGGGGSBTTT
T ss_pred             cCCCcHHHHHhcCC
Confidence            99999999998653

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.1e-15  Score=141.17  Aligned_cols=98  Identities=21%  Similarity=0.410  Sum_probs=82.9

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      .++|+..+.||+|+||+||+|.+++++.||||.++....  ..+.|.+|+.++++++|||||+++|++. .+..++||||
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~--~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey   92 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEY   92 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC--CHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEe
Confidence            357888899999999999999998888999999976543  3478999999999999999999999984 5668999999


Q ss_pred             cCCCChhhhhccCCCCcccccc
Q 011189          468 VSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       468 ~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      +++|+|.++++.+.. ..++|.
T Consensus        93 ~~~g~l~~~~~~~~~-~~l~~~  113 (285)
T d1fmka3          93 MSKGSLLDFLKGETG-KYLRLP  113 (285)
T ss_dssp             CTTCBHHHHHSHHHH-TTCCHH
T ss_pred             cCCCchhhhhhhccc-ccchHH
Confidence            999999999987532 236664

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.3e-15  Score=143.77  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=83.6

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|+..+.||+|+||+||++... +++.||+|.++........+.+.+|+.+|++++|||||++++++...+..+||||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            567888899999999999999964 6889999998765444556789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|++++
T Consensus        85 y~~gg~L~~~l~~~~   99 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG   99 (322)
T ss_dssp             CCTTEEHHHHHHHHS
T ss_pred             cCCCCcHHHHHhhcC
Confidence            999999999998653

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-14  Score=137.32  Aligned_cols=91  Identities=20%  Similarity=0.354  Sum_probs=80.9

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||+||++.. .+++.||||.++.... ...+.+.+|+.++++++|||||++++++...+..+|||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC-hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence            4688899999999999999985 4689999999875543 3457799999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.++++.+
T Consensus        99 ~~gg~L~~~~~~~  111 (293)
T d1yhwa1          99 LAGGSLTDVVTET  111 (293)
T ss_dssp             CTTCBHHHHHHHS
T ss_pred             cCCCcHHHHhhcc
Confidence            9999999988754

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-14  Score=137.84  Aligned_cols=94  Identities=27%  Similarity=0.392  Sum_probs=81.2

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-----hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCcc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-----KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVP  461 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  461 (491)
                      .+.|...+.||+|+||+||++.. .+++.||||.++...     .....+.|.+|+.+|++++|||||++++++.+.+..
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            35688889999999999999996 468899999985432     112357899999999999999999999999999999


Q ss_pred             EEEEeccCCCChhhhhccCC
Q 011189          462 LLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       462 ~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +|||||+++|+|.++|+.++
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~  108 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKE  108 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHS
T ss_pred             EEEEEcCCCccccchhcccc
Confidence            99999999999999998653

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=9.9e-15  Score=140.06  Aligned_cols=94  Identities=24%  Similarity=0.348  Sum_probs=76.9

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .+.|...+.||+|+||+||++... +++.||||.+.........+.+.+|+.+|++++|||||++++++...+..+||||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            456888899999999999999964 5889999998765433345678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|..++
T Consensus        88 ~~~gg~L~~~l~~~~  102 (307)
T d1a06a_          88 LVSGGELFDRIVEKG  102 (307)
T ss_dssp             CCCSCBHHHHHHTCS
T ss_pred             ccCCCcHHHhhhccc
Confidence            999999999998653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.4e-14  Score=138.75  Aligned_cols=99  Identities=30%  Similarity=0.489  Sum_probs=86.9

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEE
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLC  455 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~  455 (491)
                      .+++.++++|+..+.||+|+||+||+|+++      +++.||||+++........++|.+|+.++++++||||+++++++
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            345556788999999999999999999864      34689999998765545567899999999999999999999999


Q ss_pred             EeCCccEEEEeccCCCChhhhhccC
Q 011189          456 LQTKVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       456 ~~~~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ...+..+++|||+++|+|.++|+..
T Consensus        86 ~~~~~~~~v~e~~~~g~L~~~l~~~  110 (301)
T d1lufa_          86 AVGKPMCLLFEYMAYGDLNEFLRSM  110 (301)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHT
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhc
Confidence            9999999999999999999999864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.7e-15  Score=139.79  Aligned_cols=96  Identities=27%  Similarity=0.442  Sum_probs=78.6

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-CccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-KVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~Ey  467 (491)
                      ++|+..+.||+|+||.||+|.+ .+..||||+++...   ..++|.+|++++++++|||||+++|++.+. +..+|||||
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey   82 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   82 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHH---HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEec
Confidence            4566778899999999999998 57889999997543   347799999999999999999999998664 568999999


Q ss_pred             cCCCChhhhhccCCCCcccccc
Q 011189          468 VSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       468 ~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      +++|+|.++|+.++. ..++|+
T Consensus        83 ~~~g~L~~~l~~~~~-~~l~~~  103 (262)
T d1byga_          83 MAKGSLVDYLRSRGR-SVLGGD  103 (262)
T ss_dssp             CTTEEHHHHHHHHHH-HHCCHH
T ss_pred             cCCCCHHHHHHhcCC-CCCCHH
Confidence            999999999986432 235554

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=135.22  Aligned_cols=86  Identities=27%  Similarity=0.449  Sum_probs=71.1

Q ss_pred             ceeccCCcceEEEEEEcC---CcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEeccCC
Q 011189          395 NFLGEGGFGSVYRGVLSD---DTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFVSN  470 (491)
Q Consensus       395 ~~lG~G~fG~V~~g~~~~---~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  470 (491)
                      ++||+|+||+||+|.+++   ++.||||.++... .....++|.+|+.+|++++|||||+++|++. .+..+|||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~-~~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEec-cCCEEEEEEcCCC
Confidence            569999999999998643   4689999986542 2244578999999999999999999999985 4567899999999


Q ss_pred             CChhhhhccCC
Q 011189          471 GTLFHHIHSKS  481 (491)
Q Consensus       471 GsL~~~L~~~~  481 (491)
                      |+|.++++...
T Consensus        92 g~L~~~l~~~~  102 (277)
T d1xbba_          92 GPLNKYLQQNR  102 (277)
T ss_dssp             EEHHHHHHHCT
T ss_pred             CcHHHHHhhcc
Confidence            99999998754

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=138.29  Aligned_cols=91  Identities=21%  Similarity=0.347  Sum_probs=80.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      +.|+..+.||+|+||+||++... +++.||+|.++.... ...+.|.+|+++|++++|||||++++++...+..+|||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE-EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS-GGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence            45777889999999999999964 688999999876543 4557899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +++|+|.+++.+.
T Consensus        91 ~~~g~L~~~~~~~  103 (288)
T d2jfla1          91 CAGGAVDAVMLEL  103 (288)
T ss_dssp             CTTEEHHHHHHHH
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999998754

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=137.06  Aligned_cols=99  Identities=26%  Similarity=0.475  Sum_probs=83.0

Q ss_pred             ccccccceeccCCcceEEEEEEcCC-----cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDD-----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~-----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      +.|+..++||+|+||+||+|.++..     ..||||+++.........+|.+|+.++++++|||||+++|++.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            4577788999999999999987542     47999999766554556789999999999999999999999999999999


Q ss_pred             EEeccCCCChhhhhccCCCCcccccc
Q 011189          464 VYEFVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      ||||+++|+|.+++.....  .++|.
T Consensus        87 v~e~~~~~~l~~~~~~~~~--~~~~~  110 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDG--EFSVL  110 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTT--CSCHH
T ss_pred             EEEecccCcchhhhhcccc--cccHH
Confidence            9999999999998886543  35553

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.48  E-value=2.8e-14  Score=139.33  Aligned_cols=93  Identities=24%  Similarity=0.395  Sum_probs=82.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++.. .+++.||||.+..... ...+.+.+|+.+|++++|||||++++++.+.+..+||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE  103 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE-SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  103 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSH-HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccch-hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            35788889999999999999986 4688999999876544 456789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|.+..
T Consensus       104 ~~~gg~L~~~l~~~~  118 (350)
T d1koaa2         104 FMSGGELFEKVADEH  118 (350)
T ss_dssp             CCCSCBHHHHHTCTT
T ss_pred             cCCCCCHHHHHHhhc
Confidence            999999999997653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-14  Score=135.50  Aligned_cols=91  Identities=18%  Similarity=0.305  Sum_probs=77.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe--CCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ--TKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv  464 (491)
                      ++|+..+.||+|+||+||+++.. +++.||+|.+.... .....+.|.+|+.++++++|||||++++++.+  .+..+||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            57888899999999999999864 68899999986543 33456789999999999999999999999865  4567899


Q ss_pred             EeccCCCChhhhhcc
Q 011189          465 YEFVSNGTLFHHIHS  479 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~  479 (491)
                      |||+++|+|.++|+.
T Consensus        84 mEy~~~g~L~~~i~~   98 (269)
T d2java1          84 MEYCEGGDLASVITK   98 (269)
T ss_dssp             EECCTTEEHHHHHHH
T ss_pred             EecCCCCcHHHHHHh
Confidence            999999999999975

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-14  Score=135.28  Aligned_cols=97  Identities=24%  Similarity=0.425  Sum_probs=79.6

Q ss_pred             hccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||+|+++  ..||||.++... .....+.|.+|+.+|++++|||||+++|++.+ +..+||||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEe
Confidence            456788899999999999999864  359999987542 33456889999999999999999999998754 56799999


Q ss_pred             ccCCCChhhhhccCCCCcccccc
Q 011189          467 FVSNGTLFHHIHSKSSQVLKTWK  489 (491)
Q Consensus       467 y~~~GsL~~~L~~~~~~~~l~W~  489 (491)
                      |+++|+|.++|+....  .++|.
T Consensus        84 y~~~g~L~~~l~~~~~--~~~~~  104 (276)
T d1uwha_          84 WCEGSSLYHHLHIIET--KFEMI  104 (276)
T ss_dssp             CCCEEEHHHHHHTSCC--CCCHH
T ss_pred             cCCCCCHHHHHhhccC--CCCHH
Confidence            9999999999986543  35553

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-14  Score=137.91  Aligned_cols=92  Identities=23%  Similarity=0.514  Sum_probs=76.2

Q ss_pred             ccccccceeccCCcceEEEEEEcC-Cc--EEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD-DT--QVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~-~~--~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|+..++||+|+||+||+|.+++ +.  .||||+++........++|.+|+++|.++ +|||||+++|++...+..+||
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            567778899999999999998754 33  57888876554434567899999999999 799999999999999999999


Q ss_pred             EeccCCCChhhhhccC
Q 011189          465 YEFVSNGTLFHHIHSK  480 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~  480 (491)
                      |||+++|+|.++|+.+
T Consensus        90 ~ey~~~g~L~~~l~~~  105 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKS  105 (309)
T ss_dssp             ECCCTTCBHHHHHHTT
T ss_pred             EEecCCCcHHHHHhhc
Confidence            9999999999999865

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.9e-14  Score=136.80  Aligned_cols=92  Identities=22%  Similarity=0.334  Sum_probs=81.6

Q ss_pred             hccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .++|...+.||+|+||+||++... +++.||+|.++....  ....+.+|+.+|++++|||||++++++.+.+..+||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~--~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE   81 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT--DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH--HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc--cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            467888899999999999999864 678999999976543  34568899999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.++|+.+.
T Consensus        82 ~~~gg~L~~~i~~~~   96 (321)
T d1tkia_          82 FISGLDIFERINTSA   96 (321)
T ss_dssp             CCCCCBHHHHHTSSS
T ss_pred             cCCCCcHHHHHHhcC
Confidence            999999999998654

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-14  Score=133.93  Aligned_cols=92  Identities=24%  Similarity=0.454  Sum_probs=80.4

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|...+.||+|+||+||+++.+ +++.||+|.+....  .....+.+.+|+.++++++|||||++++++.+.+..+|||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            46888899999999999999974 57899999986432  2234577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|+..
T Consensus        86 Ey~~~g~L~~~l~~~  100 (263)
T d2j4za1          86 EYAPLGTVYRELQKL  100 (263)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             eecCCCcHHHHHhhc
Confidence            999999999999864

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.45  E-value=5.9e-14  Score=137.13  Aligned_cols=93  Identities=25%  Similarity=0.356  Sum_probs=81.9

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      .+.|+..+.||+|+||+||++.. .+++.||||.++.... ...+.+.+|+.+|++++|||||++++++...+..+||||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcch-hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            35688889999999999999986 4689999999876543 345778999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+++|+|.+++....
T Consensus       107 ~~~gg~L~~~~~~~~  121 (352)
T d1koba_         107 FLSGGELFDRIAAED  121 (352)
T ss_dssp             CCCCCBHHHHTTCTT
T ss_pred             cCCCChHHHHHHhcC
Confidence            999999999887654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5e-14  Score=136.31  Aligned_cols=95  Identities=29%  Similarity=0.516  Sum_probs=78.6

Q ss_pred             hhccccccceeccCCcceEEEEEEcC-C-----cEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCC
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLSD-D-----TQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTK  459 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~~-~-----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  459 (491)
                      ..++|+..++||+|+||+||+|+... +     ..||+|.+...........|.+|+.+|.++ +|||||++++++...+
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            34678888999999999999998643 2     369999987654444567899999999998 8999999999999999


Q ss_pred             ccEEEEeccCCCChhhhhccCC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      ..+|||||+++|+|.++|+.++
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~  136 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKR  136 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTT
T ss_pred             eEEEEEEcCCCCcHHHHHHhcc
Confidence            9999999999999999998764

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=134.80  Aligned_cols=93  Identities=19%  Similarity=0.276  Sum_probs=81.0

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..+.||+|+||+||++.. .+++.||||.+....  .....+.+.+|+.+|++++|||||++++++...+..+|||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5688889999999999999996 468899999986432  2234577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.++++..+
T Consensus        88 Ey~~gg~L~~~~~~~~  103 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG  103 (288)
T ss_dssp             CCCTTEEHHHHHHHHS
T ss_pred             EccCCCCHHHhhhccC
Confidence            9999999999988653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6e-14  Score=134.70  Aligned_cols=94  Identities=34%  Similarity=0.548  Sum_probs=82.2

Q ss_pred             hhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCc
Q 011189          387 ATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKV  460 (491)
Q Consensus       387 ~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  460 (491)
                      ..++|...+.||+|+||+||+|.++      .++.||||+++..........|.+|+.++++++|||||+++|++...+.
T Consensus        18 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~   97 (308)
T d1p4oa_          18 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   97 (308)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCc
Confidence            3467788899999999999999863      2578999999866554566789999999999999999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++||||+++|+|.++++..
T Consensus        98 ~~lv~e~~~~g~l~~~~~~~  117 (308)
T d1p4oa_          98 TLVIMELMTRGDLKSYLRSL  117 (308)
T ss_dssp             CEEEEECCTTCBHHHHHHHH
T ss_pred             eeEEEeecCCCCHHHHHHhc
Confidence            99999999999999999854

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.7e-14  Score=135.04  Aligned_cols=94  Identities=27%  Similarity=0.452  Sum_probs=82.6

Q ss_pred             hccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeCCc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQTKV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  460 (491)
                      .++|+..+.||+|+||.||+|++.      .++.||||+++.........+|.+|+.+++++ +|||||+++|++...+.
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~  101 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCE
Confidence            467777889999999999999862      34689999998766556677899999999999 69999999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||+++|+|.++|+...
T Consensus       102 ~~lvmE~~~~g~l~~~l~~~~  122 (311)
T d1t46a_         102 TLVITEYCCYGDLLNFLRRKR  122 (311)
T ss_dssp             CEEEEECCTTEEHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHhcc
Confidence            999999999999999998753

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.9e-14  Score=130.77  Aligned_cols=89  Identities=24%  Similarity=0.359  Sum_probs=74.6

Q ss_pred             cccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEe----CCccEEEE
Q 011189          392 DKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQ----TKVPLLVY  465 (491)
Q Consensus       392 ~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~  465 (491)
                      +..++||+|+||+||++... +++.||+|.+.... .....+.|.+|+++|++++|||||++++++..    ....+|||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            34467999999999999964 57899999986543 32456789999999999999999999999865    34578999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|.++|++.
T Consensus        92 E~~~~g~L~~~l~~~  106 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRF  106 (270)
T ss_dssp             ECCCSCBHHHHHHHH
T ss_pred             eCCCCCcHHHHHhcc
Confidence            999999999999864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=132.78  Aligned_cols=89  Identities=33%  Similarity=0.619  Sum_probs=75.8

Q ss_pred             cceeccCCcceEEEEEEcCC----cEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-CccEEEEecc
Q 011189          394 SNFLGEGGFGSVYRGVLSDD----TQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-KVPLLVYEFV  468 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~~~~----~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~Ey~  468 (491)
                      .++||+|+||+||+|.+.++    ..||||+++........++|.+|+++|++++|||||+++|++... ...++||||+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            46799999999999997442    368999997655546678899999999999999999999998765 5789999999


Q ss_pred             CCCChhhhhccCCC
Q 011189          469 SNGTLFHHIHSKSS  482 (491)
Q Consensus       469 ~~GsL~~~L~~~~~  482 (491)
                      ++|+|.++++....
T Consensus       112 ~~g~l~~~~~~~~~  125 (311)
T d1r0pa_         112 KHGDLRNFIRNETH  125 (311)
T ss_dssp             TTCBHHHHHHCTTC
T ss_pred             ecCchhhhhccccc
Confidence            99999999987643

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=8e-14  Score=133.69  Aligned_cols=92  Identities=23%  Similarity=0.294  Sum_probs=79.2

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ..|+..+.||+|+||+||++.. .+++.||||.++...  .....+.|.+|+.+|++++|||||++++++...+..+|||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            3578889999999999999985 467899999986543  2244577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccC
Q 011189          466 EFVSNGTLFHHIHSK  480 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~  480 (491)
                      ||+++|+|..++..+
T Consensus        95 E~~~~g~l~~~~~~~  109 (309)
T d1u5ra_          95 EYCLGSASDLLEVHK  109 (309)
T ss_dssp             ECCSEEHHHHHHHHT
T ss_pred             EecCCCchHHHHHhC
Confidence            999999998776654

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=129.86  Aligned_cols=93  Identities=24%  Similarity=0.424  Sum_probs=79.3

Q ss_pred             hccccccceeccCCcceEEEEEEcC----CcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD----DTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .++|+..+.||+|+||+||+|.+..    +..||||.++........+.|.+|+.++++++|||||+++|++. .+..+|
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            4578888999999999999998643    34689999876655456788999999999999999999999885 567899


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ||||+++|+|.+++....
T Consensus        85 v~E~~~~g~l~~~~~~~~  102 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVRK  102 (273)
T ss_dssp             EEECCTTEEHHHHHHHTT
T ss_pred             EEEeccCCcHHhhhhccC
Confidence            999999999999987654

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.42  E-value=1.1e-13  Score=130.59  Aligned_cols=93  Identities=22%  Similarity=0.363  Sum_probs=79.8

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch--------hhHHHHHHHHHHHHHcCC-CCccccEEeEEEeC
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK--------IRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQT  458 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~--------~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  458 (491)
                      ++|+..+.||+|+||+||+++. .+++.+|||+++....        ....+.+.+|+.++++++ |||||++++++.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5688889999999999999986 4688999999865321        122356899999999997 99999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..+|||||+++|+|.++|+.+.
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~  105 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKV  105 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS
T ss_pred             cceEEEEEcCCCchHHHHHHhcC
Confidence            99999999999999999998653

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2e-13  Score=130.62  Aligned_cols=87  Identities=22%  Similarity=0.382  Sum_probs=70.6

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHH--HHHHHcCCCCccccEEeEEEeCC----ccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHE--MGIVSQINHKNVVKILGLCLQTK----VPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E--~~~l~~l~H~niv~l~g~~~~~~----~~~  462 (491)
                      .+|...+.||+|+||+||+|++ +++.||||+++....    +++.+|  +..+.+++|||||++++++...+    ..+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~----~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~   77 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE----RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch----hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEE
Confidence            3566678899999999999997 688999999875432    334444  44556789999999999998754    578


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      |||||+++|+|.++|++.
T Consensus        78 lv~Ey~~~g~L~~~l~~~   95 (303)
T d1vjya_          78 LVSDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EEEECCTTCBHHHHHHHC
T ss_pred             EEEecccCCCHHHHHhcC
Confidence            999999999999999865

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=2.3e-13  Score=130.88  Aligned_cols=93  Identities=17%  Similarity=0.336  Sum_probs=81.4

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..+.||+|+||+||+++. .+++.||||+++...  .....+.+.+|+.++++++|||||++++++...+..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5688889999999999999996 468999999986532  2234578999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+++|+|.+++....
T Consensus        84 E~~~gg~l~~~~~~~~   99 (316)
T d1fota_          84 DYIEGGELFSLLRKSQ   99 (316)
T ss_dssp             CCCCSCBHHHHHHHTS
T ss_pred             eecCCccccccccccc
Confidence            9999999999988764

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-13  Score=132.62  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=82.0

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      .++|...+.||+|+||+||+++. .+++.||+|.++...  .....+.+.+|+.+|++++|||||++++++.+.+..+||
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            35788889999999999999996 468999999987542  223457799999999999999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++++..+
T Consensus        84 ~ey~~gg~L~~~~~~~~  100 (337)
T d1o6la_          84 MEYANGGELFFHLSRER  100 (337)
T ss_dssp             EECCTTCBHHHHHHHHS
T ss_pred             eeccCCCchhhhhhccc
Confidence            99999999999998753

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=3e-13  Score=127.73  Aligned_cols=94  Identities=23%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC----c
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK----V  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~  460 (491)
                      .++|...+.||+|+||+||++.. .+++.||||.++...  .....+.|.+|+.++++++|||||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            35688889999999999999985 468899999987542  2244578999999999999999999999987654    3


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||+++|+|.+++...+
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~  106 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEG  106 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC
T ss_pred             EEEEEECCCCCEehhhhcccC
Confidence            789999999999999988653

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.4e-13  Score=129.09  Aligned_cols=92  Identities=26%  Similarity=0.582  Sum_probs=74.5

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCc----EEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDT----QVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLL  463 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  463 (491)
                      .+|+..++||+|+||+||+|.+. +++    .||+|+++........++|.+|+.++++++|||||+++|++.+. ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            35888899999999999999864 333    58999987655445668899999999999999999999999764 5678


Q ss_pred             EEeccCCCChhhhhccCC
Q 011189          464 VYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       464 v~Ey~~~GsL~~~L~~~~  481 (491)
                      ++||+.+|+|.+++..+.
T Consensus        88 v~e~~~~~~l~~~~~~~~  105 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHK  105 (317)
T ss_dssp             EEECCTTCBHHHHHHHTS
T ss_pred             EEEeccCCcccccccccc
Confidence            899999999999988764

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.7e-13  Score=130.69  Aligned_cols=93  Identities=20%  Similarity=0.296  Sum_probs=78.4

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHH-cCCCCccccEEeEEEeCCccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVS-QINHKNVVKILGLCLQTKVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~~~~~~lv  464 (491)
                      ++|...+.||+|+||+||+++.. +++.||||.++...  .....+.+.+|..++. .++|||||++++++.+.+..+||
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            46888899999999999999964 68899999986532  2234566778887765 68999999999999999999999


Q ss_pred             EeccCCCChhhhhccCC
Q 011189          465 YEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~~~~  481 (491)
                      |||+++|+|.++|+...
T Consensus        82 mEy~~~g~L~~~i~~~~   98 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH   98 (320)
T ss_dssp             EECCTTCBHHHHHHHHS
T ss_pred             EeecCCCcHHHHhhccC
Confidence            99999999999998653

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-13  Score=127.34  Aligned_cols=92  Identities=26%  Similarity=0.446  Sum_probs=68.9

Q ss_pred             ccccccceeccCCcceEEEEEEcC--C--cEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSD--D--TQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~--~--~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|+..+.||+|+||+||+|+++.  +  ..||||+++...  .....++|.+|+.+|++++|||||+++|++.+ +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            457778899999999999998642  2  378999986542  22445789999999999999999999999965 5678


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +||||+++|+|.+++..+.
T Consensus        87 lv~e~~~~~~l~~~~~~~~  105 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQ  105 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHG
T ss_pred             eeeeeecCcchhhhhhccc
Confidence            9999999999999887653

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.7e-13  Score=126.68  Aligned_cols=94  Identities=29%  Similarity=0.422  Sum_probs=76.3

Q ss_pred             hccccccceeccCCcceEEEEEEcC--------CcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLSD--------DTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~~--------~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      .++|...+.||+|+||.||+++...        +..||||+++.........++.+|...+.++ +|||||++++++.+.
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            4677788999999999999998532        2479999998765545668899999999888 899999999999999


Q ss_pred             CccEEEEeccCCCChhhhhccCC
Q 011189          459 KVPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      +..++||||+++|+|.++|+.+.
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~  114 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARR  114 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTS
T ss_pred             CeEEEEEEccCCCcHHHHHHhhc
Confidence            99999999999999999998654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.29  E-value=1.5e-12  Score=123.37  Aligned_cols=92  Identities=22%  Similarity=0.332  Sum_probs=79.0

Q ss_pred             ccccccceeccCCcceEEEEEEcCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEec
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEF  467 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  467 (491)
                      ++|...+.||+|+||+||+++.++++.||||+++... .....+.|.+|+.+|++++|||||++++.+...+..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            4688889999999999999999889999999986543 223357899999999999999999999999999999999999


Q ss_pred             cCCCChhhhhccC
Q 011189          468 VSNGTLFHHIHSK  480 (491)
Q Consensus       468 ~~~GsL~~~L~~~  480 (491)
                      +.++.|..+++.+
T Consensus        82 ~~~~~~~~~~~~~   94 (286)
T d1ob3a_          82 LDQDLKKLLDVCE   94 (286)
T ss_dssp             CSEEHHHHHHTST
T ss_pred             ehhhhHHHHHhhc
Confidence            9877666665544

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2.1e-12  Score=125.86  Aligned_cols=93  Identities=23%  Similarity=0.342  Sum_probs=81.1

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVY  465 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  465 (491)
                      ++|+..+.||+|+||+||+++.+ +++.||||.+....  .....+.+.+|+.+|+.++|||||++++++...+..++|+
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            57888899999999999999864 68999999986432  2234577999999999999999999999999999999999


Q ss_pred             eccCCCChhhhhccCC
Q 011189          466 EFVSNGTLFHHIHSKS  481 (491)
Q Consensus       466 Ey~~~GsL~~~L~~~~  481 (491)
                      ||+.+|+|.++|...+
T Consensus       121 e~~~~g~l~~~l~~~~  136 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             ECCTTCBHHHHHHHHC
T ss_pred             ccccccchhhhHhhcC
Confidence            9999999999997653

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-12  Score=123.26  Aligned_cols=91  Identities=27%  Similarity=0.463  Sum_probs=74.1

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-IRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|+..+.||+|+||+||+++. .+++.||||+++.... ....+.+.+|+.+|++++|||||++++++......+||||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788889999999999999996 5689999999865432 1234789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccC
Q 011189          467 FVSNGTLFHHIHSK  480 (491)
Q Consensus       467 y~~~GsL~~~L~~~  480 (491)
                      |+.+ ++.+++...
T Consensus        82 ~~~~-~~~~~~~~~   94 (298)
T d1gz8a_          82 FLHQ-DLKKFMDAS   94 (298)
T ss_dssp             CCSE-EHHHHHHHT
T ss_pred             ecCC-chhhhhhhh
Confidence            9975 555555443

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=2.2e-12  Score=126.41  Aligned_cols=93  Identities=16%  Similarity=0.231  Sum_probs=75.8

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc--hhhHHHHH---HHHHHHHHcCCCCccccEEeEEEeCCccE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD--KIRVSQEF---QHEMGIVSQINHKNVVKILGLCLQTKVPL  462 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~--~~~~~~~f---~~E~~~l~~l~H~niv~l~g~~~~~~~~~  462 (491)
                      ++|...++||+|+||+||+++.. +++.||||.+....  .......+   .+|+.+++.++|||||++++++...+..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            57888899999999999999964 68999999986432  11112233   34577788889999999999999999999


Q ss_pred             EEEeccCCCChhhhhccCC
Q 011189          463 LVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~~  481 (491)
                      |||||+++|+|.++|+.+.
T Consensus        84 ivmE~~~gg~L~~~l~~~~  102 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHG  102 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHC
T ss_pred             EEEEecCCCcHHHHHHhcc
Confidence            9999999999999998653

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.8e-12  Score=122.32  Aligned_cols=87  Identities=23%  Similarity=0.395  Sum_probs=69.5

Q ss_pred             cceeccCCcceEEEEEE-cCCcEEEEEeccccchhh----HHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEecc
Q 011189          394 SNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIR----VSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYEFV  468 (491)
Q Consensus       394 ~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  468 (491)
                      .++||+|+||+||++.. .+++.||||+++......    ..+.+.+|+.++++++|||||++++++...+..+|||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            46899999999999996 468899999986543211    1356899999999999999999999999999999999999


Q ss_pred             CCCChhhhhccC
Q 011189          469 SNGTLFHHIHSK  480 (491)
Q Consensus       469 ~~GsL~~~L~~~  480 (491)
                      +++++..+++.+
T Consensus        83 ~~~~~~~~~~~~   94 (299)
T d1ua2a_          83 ETDLEVIIKDNS   94 (299)
T ss_dssp             SEEHHHHHTTCC
T ss_pred             cchHHhhhhhcc
Confidence            988776665543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.2e-12  Score=119.24  Aligned_cols=93  Identities=24%  Similarity=0.392  Sum_probs=80.8

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|+..+.||+|+||+||+++. .+++.||||+++... .....+++.+|+.++++++||||+++++++...+..++++|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4688889999999999999996 467899999986543 22456889999999999999999999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      ++.+++|..+++..+
T Consensus        82 ~~~~~~l~~~~~~~~   96 (292)
T d1unla_          82 FCDQDLKKYFDSCNG   96 (292)
T ss_dssp             CCSEEHHHHHHHTTT
T ss_pred             ecccccccccccccc
Confidence            999999988887653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.9e-12  Score=119.51  Aligned_cols=96  Identities=29%  Similarity=0.385  Sum_probs=76.9

Q ss_pred             HhhccccccceeccCCcceEEEEEEc------CCcEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCccccEEeEEEeC
Q 011189          386 KATKNYDKSNFLGEGGFGSVYRGVLS------DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQI-NHKNVVKILGLCLQT  458 (491)
Q Consensus       386 ~~t~~~~~~~~lG~G~fG~V~~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  458 (491)
                      ...++|+..+.||+|+||+||+|...      .++.||||+++........+.+.+|..++.++ +|+|||.+++++.+.
T Consensus        10 i~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~   89 (299)
T d1ywna1          10 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP   89 (299)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             ccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccC
Confidence            34567888899999999999999853      23689999997665445567888999888887 689999999998765


Q ss_pred             C-ccEEEEeccCCCChhhhhccCC
Q 011189          459 K-VPLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       459 ~-~~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      + ..++||||+++|+|.++|+.++
T Consensus        90 ~~~~~iv~E~~~~g~L~~~l~~~~  113 (299)
T d1ywna1          90 GGPLMVIVEFCKFGNLSTYLRSKR  113 (299)
T ss_dssp             TSCCEEEEECCTTCBHHHHHHHTG
T ss_pred             CCeEEEEEEecCCCcHHHHHHhcc
Confidence            4 6889999999999999998653

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7e-12  Score=121.33  Aligned_cols=88  Identities=22%  Similarity=0.351  Sum_probs=71.8

Q ss_pred             hcccccc-ceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHc-CCCCccccEEeEEEe----CCc
Q 011189          388 TKNYDKS-NFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQ-INHKNVVKILGLCLQ----TKV  460 (491)
Q Consensus       388 t~~~~~~-~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~----~~~  460 (491)
                      .++|... +.||+|+||+||++.. .+++.||||.++..      ..+.+|+.++.+ .+|||||++++++..    ...
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~   83 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   83 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCE
Confidence            3567665 4699999999999986 56899999998643      346689988765 489999999999865    346


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .+|||||+++|+|.++|+.+.
T Consensus        84 ~~ivmEy~~gg~L~~~i~~~~  104 (335)
T d2ozaa1          84 LLIVMECLDGGELFSRIQDRG  104 (335)
T ss_dssp             EEEEEECCCSEEHHHHHHSCS
T ss_pred             EEEEEECCCCCcHHHHHHhcC
Confidence            899999999999999998753

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.8e-12  Score=121.27  Aligned_cols=93  Identities=18%  Similarity=0.347  Sum_probs=74.4

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC----ccE
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK----VPL  462 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~  462 (491)
                      +++|...+.||+|+||+||++.. .+++.||||+++........+.+++|+.+|++++||||+++++++....    ..+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            35688889999999999999985 4789999999976554456678999999999999999999999986643    235


Q ss_pred             EEEeccCCCChhhhhccC
Q 011189          463 LVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       463 lv~Ey~~~GsL~~~L~~~  480 (491)
                      +++||+.+|+|.++|+.+
T Consensus        87 ~l~~~~~~g~L~~~l~~~  104 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQ  104 (345)
T ss_dssp             EEEEECCCEEHHHHHHHC
T ss_pred             EEEEeecCCchhhhhhcC
Confidence            566677899999999764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.17  E-value=2.3e-11  Score=117.35  Aligned_cols=86  Identities=21%  Similarity=0.451  Sum_probs=74.0

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeC--CccEEE
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQT--KVPLLV  464 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv  464 (491)
                      ++|+..++||+|+||+||+++. .+++.||||+++...    .+++.+|+.+|.+++ ||||+++++++...  ...++|
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~----~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK----KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC----HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH----HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            5788899999999999999996 468899999987543    367889999999995 99999999998754  468899


Q ss_pred             EeccCCCChhhhhc
Q 011189          465 YEFVSNGTLFHHIH  478 (491)
Q Consensus       465 ~Ey~~~GsL~~~L~  478 (491)
                      |||+++|+|.++++
T Consensus       111 ~e~~~~~~L~~~~~  124 (328)
T d3bqca1         111 FEHVNNTDFKQLYQ  124 (328)
T ss_dssp             EECCCSCBGGGTTT
T ss_pred             EeecCCCcHHHHhc
Confidence            99999999987754

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-11  Score=119.10  Aligned_cols=93  Identities=19%  Similarity=0.305  Sum_probs=76.8

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-----Cc
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-----KV  460 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  460 (491)
                      .++|+..+.||+|+||+||++.. .+++.||||+++... .....+.+.+|+.+|++++|||+|++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            45788889999999999999985 468999999987543 224457799999999999999999999998643     34


Q ss_pred             cEEEEeccCCCChhhhhccC
Q 011189          461 PLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      .++++||+.+|+|.++++.+
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~  116 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ  116 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC
T ss_pred             eEEEEEeecCCchhhhcccc
Confidence            46778888999999999754

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8.5e-12  Score=120.08  Aligned_cols=93  Identities=20%  Similarity=0.372  Sum_probs=78.8

Q ss_pred             ccccccceeccCCcceEEEEEE----cCCcEEEEEeccccc---hhhHHHHHHHHHHHHHcCCC-CccccEEeEEEeCCc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL----SDDTQVAVKKPKEAD---KIRVSQEFQHEMGIVSQINH-KNVVKILGLCLQTKV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~----~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~  460 (491)
                      ++|+..+.||+|+||+||++..    ..++.||||.++...   .....+.+.+|+.++++++| |||+++++.......
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            6688899999999999999984    247899999986432   11234678899999999976 899999999999999


Q ss_pred             cEEEEeccCCCChhhhhccCC
Q 011189          461 PLLVYEFVSNGTLFHHIHSKS  481 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~~~  481 (491)
                      .++++||+.+|+|.++++..+
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~  124 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE  124 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS
T ss_pred             eeeeeecccccHHHHHHHhcc
Confidence            999999999999999998654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3e-11  Score=117.44  Aligned_cols=92  Identities=21%  Similarity=0.301  Sum_probs=70.0

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------  459 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  459 (491)
                      .++|+..+.||+|+||+||++.. .+++.||||+++... .....+.+.+|+.+|++++|||||++++++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            45788889999999999999996 468999999987542 3245678999999999999999999999997654      


Q ss_pred             ccEEEEeccCCCChhhhhccC
Q 011189          460 VPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       460 ~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                      ..+|||||+ +.+|.++++..
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~  116 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHE  116 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC
T ss_pred             eEEEEEecc-cccHHHHHHhc
Confidence            468999999 56777777643

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.2e-11  Score=116.82  Aligned_cols=90  Identities=24%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC------Cc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT------KV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~  460 (491)
                      ++|+..++||+|+||+||+|... +++.||||++.... .....+.+.+|+.++++++|||||++++++...      ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            56888899999999999999964 68999999986542 224456799999999999999999999998643      57


Q ss_pred             cEEEEeccCCCChhhhhcc
Q 011189          461 PLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L~~  479 (491)
                      .++||||+.+ +|.+.++.
T Consensus        97 ~~iv~Ey~~~-~l~~~~~~  114 (355)
T d2b1pa1          97 VYLVMELMDA-NLCQVIQM  114 (355)
T ss_dssp             EEEEEECCSE-EHHHHHTS
T ss_pred             eEEEEeccch-HHHHhhhc
Confidence            7999999975 55555543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-11  Score=118.35  Aligned_cols=81  Identities=25%  Similarity=0.434  Sum_probs=64.9

Q ss_pred             cccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCccccEEeEEEeCC------ccE
Q 011189          390 NYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVKILGLCLQTK------VPL  462 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~~  462 (491)
                      +|...++||+|+||+||+++.. +++.||||+++....     .+.+|+.+|++++|+|||++++++....      ..+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~   95 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN   95 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch-----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEE
Confidence            5677789999999999999964 689999999875432     2347999999999999999999986532      468


Q ss_pred             EEEeccCCCChhh
Q 011189          463 LVYEFVSNGTLFH  475 (491)
Q Consensus       463 lv~Ey~~~GsL~~  475 (491)
                      |||||+++|.+..
T Consensus        96 lv~Ey~~~~~~~~  108 (350)
T d1q5ka_          96 LVLDYVPETVYRV  108 (350)
T ss_dssp             EEEECCSEEHHHH
T ss_pred             EEEeccCCccHHH
Confidence            9999998654333

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-11  Score=116.20  Aligned_cols=92  Identities=26%  Similarity=0.473  Sum_probs=75.5

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccch-----hhHHHHHHHHHHHHHcCC--CCccccEEeEEEeCCc
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADK-----IRVSQEFQHEMGIVSQIN--HKNVVKILGLCLQTKV  460 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~-----~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~  460 (491)
                      ++|...++||+|+||+||++.. .+++.||||.++....     .....++.+|+.++++++  |||||++++++...+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            5688889999999999999996 4689999999864321     012244778999999986  8999999999999999


Q ss_pred             cEEEEeccCC-CChhhhhccC
Q 011189          461 PLLVYEFVSN-GTLFHHIHSK  480 (491)
Q Consensus       461 ~~lv~Ey~~~-GsL~~~L~~~  480 (491)
                      .++||||+.+ ++|.++++.+
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~  104 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER  104 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH
T ss_pred             EEEEEEeccCcchHHHHHhcc
Confidence            9999999975 6788888754

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.6e-11  Score=112.73  Aligned_cols=92  Identities=24%  Similarity=0.394  Sum_probs=71.6

Q ss_pred             hccccccceeccCCcceEEEEEE-cCCcEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCccccEEeEEEeC-------
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEAD-KIRVSQEFQHEMGIVSQINHKNVVKILGLCLQT-------  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-------  458 (491)
                      .++|+..+.||+|+||+||++.. ++++.||||++.... .....+++.+|+.+|++++|+|++++++.+...       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            36788889999999999999996 478999999986542 223457789999999999999999999998653       


Q ss_pred             -CccEEEEeccCCCChhhhhcc
Q 011189          459 -KVPLLVYEFVSNGTLFHHIHS  479 (491)
Q Consensus       459 -~~~~lv~Ey~~~GsL~~~L~~  479 (491)
                       ...++||||++++.+..+...
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~  110 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNV  110 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCT
T ss_pred             CceEEEEEeccCCCccchhhhc
Confidence             357899999987766555443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.3e-10  Score=107.83  Aligned_cols=93  Identities=20%  Similarity=0.349  Sum_probs=69.0

Q ss_pred             hccccccceeccCCcceEEEEEEc-C-CcEEEEEeccccch-hhHHHHHHHHHHHHHcC---CCCccccEEeEEEeC---
Q 011189          388 TKNYDKSNFLGEGGFGSVYRGVLS-D-DTQVAVKKPKEADK-IRVSQEFQHEMGIVSQI---NHKNVVKILGLCLQT---  458 (491)
Q Consensus       388 t~~~~~~~~lG~G~fG~V~~g~~~-~-~~~vavK~l~~~~~-~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~---  458 (491)
                      .++|+..+.||+|+||+||++... . ++.||||+++.... ......+.+|+.+++.+   +||||+++++++...   
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            467888899999999999999863 3 56799999865321 12234566777776655   899999999998642   


Q ss_pred             --CccEEEEeccCCCChhhhhccC
Q 011189          459 --KVPLLVYEFVSNGTLFHHIHSK  480 (491)
Q Consensus       459 --~~~~lv~Ey~~~GsL~~~L~~~  480 (491)
                        ...++++||+++|++.......
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~  109 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVP  109 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSC
T ss_pred             cCceEEEEEEeccCCchhhhhhcc
Confidence              3678999999987765554443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.90  E-value=7.2e-10  Score=104.88  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=74.7

Q ss_pred             ccccccceeccCCcceEEEEEEc-CCcEEEEEeccccchhhHHHHHHHHHHHHHcCCC-CccccEEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVLS-DDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINH-KNVVKILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~E  466 (491)
                      ++|...+.||+|+||+||+|+.. +++.||||.+.....   .+.+.+|++.+..++| +|++.++++.......++|||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD---APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT---SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC---cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            46888899999999999999964 688999998765432   2346788888999965 899999999999999999999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+ +|+|.++++...
T Consensus        82 ~~-~~~l~~~~~~~~   95 (293)
T d1csna_          82 LL-GPSLEDLLDLCG   95 (293)
T ss_dssp             CC-CCBHHHHHHHTT
T ss_pred             ec-CCCHHHHHHhhc
Confidence            99 689999988654

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.8e-09  Score=102.37  Aligned_cols=89  Identities=20%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             ccccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCCCCcccc-EEeEEEeCCccEEEEe
Q 011189          389 KNYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQINHKNVVK-ILGLCLQTKVPLLVYE  466 (491)
Q Consensus       389 ~~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~-l~g~~~~~~~~~lv~E  466 (491)
                      ++|+..+.||+|+||+||+|.. .+++.||||.+.....   .+++.+|+++++.++|+|++. +.++....+..++|||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme   83 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   83 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT---SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc---CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEE
Confidence            4688889999999999999986 4688999998765432   245789999999998776555 4555577788899999


Q ss_pred             ccCCCChhhhhccCC
Q 011189          467 FVSNGTLFHHIHSKS  481 (491)
Q Consensus       467 y~~~GsL~~~L~~~~  481 (491)
                      |+ +|+|.+.+....
T Consensus        84 ~~-~~~l~~~~~~~~   97 (299)
T d1ckia_          84 LL-GPSLEDLFNFCS   97 (299)
T ss_dssp             CC-CCBHHHHHHHTT
T ss_pred             Ec-CCchhhhhhhcc
Confidence            99 467777766543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.30  E-value=6.7e-07  Score=78.15  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             ccceeccCCcceEEEEEEcCCcEEEEEeccccch-----------------hhHHHHHHHHHHHHHcCCCCccccEEeEE
Q 011189          393 KSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADK-----------------IRVSQEFQHEMGIVSQINHKNVVKILGLC  455 (491)
Q Consensus       393 ~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~-----------------~~~~~~f~~E~~~l~~l~H~niv~l~g~~  455 (491)
                      ..+.||+|+||+||+|...+++.||||.++....                 ......+.+|...+.++.|.+++..++..
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            3578999999999999988899999997653210                 01123456788999999999999987652


Q ss_pred             EeCCccEEEEeccCCCChhh
Q 011189          456 LQTKVPLLVYEFVSNGTLFH  475 (491)
Q Consensus       456 ~~~~~~~lv~Ey~~~GsL~~  475 (491)
                          ..+|+|||++++.+.+
T Consensus        84 ----~~~lvme~~~~~~~~~   99 (191)
T d1zara2          84 ----GNAVLMELIDAKELYR   99 (191)
T ss_dssp             ----TTEEEEECCCCEEGGG
T ss_pred             ----CCEEEEEeeccccccc
Confidence                3479999998766544

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=4.2e-07  Score=87.85  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             cccccceeccCCcceEEEEEE-cCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-----------CCccccEEeEEEe
Q 011189          390 NYDKSNFLGEGGFGSVYRGVL-SDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-----------HKNVVKILGLCLQ  457 (491)
Q Consensus       390 ~~~~~~~lG~G~fG~V~~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~~  457 (491)
                      +|+..++||+|+||+||+++. .+++.||||+++...  ...+.+.+|+.++++++           |+|||++++++..
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~--~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc--cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            488889999999999999996 468999999997643  23467888999888775           5789999988765


Q ss_pred             C--CccEEEEeccCCCCh
Q 011189          458 T--KVPLLVYEFVSNGTL  473 (491)
Q Consensus       458 ~--~~~~lv~Ey~~~GsL  473 (491)
                      .  ....+++++...+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~  109 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGEN  109 (362)
T ss_dssp             EETTEEEEEEEECCCCEE
T ss_pred             ccccceeeeeeecccccc
Confidence            3  455667776655443

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.2e-06  Score=55.81  Aligned_cols=39  Identities=44%  Similarity=0.864  Sum_probs=32.6

Q ss_pred             CcccCccccccCCCCccCcCcCCCCCccccCCCCCCCCCc
Q 011189          283 GCHDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDGK  322 (491)
Q Consensus       283 gC~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~~  322 (491)
                      .|.|++||..+ ...|.+.|.|++|+|.|.|+.||..++.
T Consensus         1 sCvDidEC~~~-~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~   39 (43)
T d1emoa1           1 SAVDMDECKEP-DVCKHGQCINTDGSYRCECPFGYILAGN   39 (43)
T ss_dssp             CCCCCCSSSST-TSCSSSCCCCCSSCCCCCCCTTEEESSS
T ss_pred             CCcceeccCCc-CCCCCCEeECCCCCeEeECCCCcccCCC
Confidence            38899999754 4457889999999999999999987653

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.9e-06  Score=54.02  Aligned_cols=37  Identities=43%  Similarity=0.890  Sum_probs=29.2

Q ss_pred             ccCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          285 HDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       285 ~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      +||+||.......+.+.|.|++|+|.|.|+.||..+.
T Consensus         1 qDinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2           1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCT
T ss_pred             CCcccccCCCCCcCCCEEECCCCCeEeECCCCCeECc
Confidence            5799997543333468999999999999999998654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.1e-06  Score=53.34  Aligned_cols=36  Identities=39%  Similarity=0.832  Sum_probs=29.0

Q ss_pred             ccCccccccCCCCc-cCcCcCCCCCccccCCCCCCCCC
Q 011189          285 HDIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       285 ~~~~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|++||.... ..| ++.|.|+.|+|.|.|+.||.++.
T Consensus         1 TDidEC~~~~-~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           1 TDIDECRISP-DLCGRGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             CCCCTTTTCS-STTTTSCEEEETTEEEECCCSSEEECT
T ss_pred             CcccccCCCC-CCCCCCEeEcCCCCeEEeCCCCCccCC
Confidence            3789997543 344 56999999999999999998763

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.2e-06  Score=52.41  Aligned_cols=34  Identities=38%  Similarity=0.798  Sum_probs=29.3

Q ss_pred             cCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |++||...  ..|...|.|++|+|.|.|++||..++
T Consensus         1 DidEC~~~--~~C~~~C~N~~Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           1 DIDECENG--GFCSGVCHNLPGTFECICGPDSALAG   34 (40)
T ss_dssp             ECCHHHHC--SSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred             CccccCCC--cCccCEeeCCCCCeEeECCCCCeeCC
Confidence            68899653  67999999999999999999998754

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.6e-06  Score=52.43  Aligned_cols=36  Identities=36%  Similarity=0.792  Sum_probs=30.1

Q ss_pred             ccCccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          285 HDIDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       285 ~~~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|++||..+ ...|.+.|.|+.|+|.|.|+.||..+.
T Consensus         1 TDidEC~~~-~~~c~~~C~Nt~G~y~C~C~~Gy~l~~   36 (43)
T d1uzka1           1 TDVNECLDP-TTCISGNCVNTPGSYICDCPPDFELNP   36 (43)
T ss_dssp             CCCCGGGST-TSSBTSEEEEETTEEEEECCTTCEECT
T ss_pred             CCccccCCC-CcCcCCEeECCCCCEEEecCCCCEECC
Confidence            378999764 445789999999999999999997654

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=5.1e-06  Score=52.58  Aligned_cols=35  Identities=46%  Similarity=1.019  Sum_probs=28.1

Q ss_pred             cCccccccCCCCc-cCcCcCCCCCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |++||.... ..| ++.|.|++|+|.|.|+.||..+.
T Consensus         1 DidEC~~~~-~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2           1 DIDECQRDP-LLCRGGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             ECCHHHHCS-STTTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             CccccCCCC-CCCCCCEeECCCCCeEEeCCCCCeECc
Confidence            688996543 344 67999999999999999998653

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=2.3e-05  Score=52.37  Aligned_cols=37  Identities=32%  Similarity=0.797  Sum_probs=27.8

Q ss_pred             ccCccccccCC-------CCccCcCcCCCCCccccCCCCCCCCC
Q 011189          285 HDIDECKEKER-------YHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       285 ~~~~~C~~~~~-------~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .|++||.....       ..|...|.|++|+|.|.|+.||..+.
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECT
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECC
Confidence            47888864321       23567899999999999999998543

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=6.9e-05  Score=46.90  Aligned_cols=33  Identities=39%  Similarity=0.863  Sum_probs=27.8

Q ss_pred             CccccccCCCCccCcCcCCCCCccccCCCCCCCCC
Q 011189          287 IDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       287 ~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      +|||..  ...|...|.|+.|+|.|.|+.||..+.
T Consensus         1 idEC~~--~~~C~~~C~n~~Gsy~C~C~~Gy~L~~   33 (41)
T d1i0ua2           1 IDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDP   33 (41)
T ss_dssp             CCTTTT--TTSCSSCEECSSSCCEECCCTTEEECT
T ss_pred             CccCCC--CCCCCCEeECCCCCEEeECCCCCeECC
Confidence            578864  467999999999999999999998543

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=4.1e-05  Score=48.11  Aligned_cols=33  Identities=30%  Similarity=0.721  Sum_probs=27.6

Q ss_pred             ccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          288 DECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       288 ~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      |||.......|...|.|++|+|.|.|+.||...
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~   33 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLH   33 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEEC
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEEC
Confidence            578665567899999999999999999999754

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=8.2e-05  Score=46.88  Aligned_cols=35  Identities=40%  Similarity=0.974  Sum_probs=28.4

Q ss_pred             ccCccccccCCCCc--cCcCcCCCCCccccCCCCCCCC
Q 011189          285 HDIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       285 ~~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +|++||.. ...+|  .+.|.|+.++|.|.|++||.|.
T Consensus         1 qDideC~~-~~~pC~n~g~C~n~~g~y~C~C~~G~~G~   37 (42)
T d2vj3a1           1 QDVDECSL-GANPCEHAGKCINTLGSFECQCLQGYTGP   37 (42)
T ss_dssp             CCCCTTTS-SSCSSSTTCEEEECSSSEEEECCTTEEST
T ss_pred             CCCccccC-CCCCCCCCcEeECCCCCEEeECCCCCcCC
Confidence            47889953 23456  6799999999999999999876

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0001  Score=47.16  Aligned_cols=34  Identities=32%  Similarity=0.794  Sum_probs=27.1

Q ss_pred             CccccccC--CCCccCcCcCCCCCccccCCCCCCCC
Q 011189          287 IDECKEKE--RYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       287 ~~~C~~~~--~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      |+||....  ...|...|.|++|+|.|.|+.||...
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~   36 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLH   36 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEEC
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeEC
Confidence            57886542  23588899999999999999999743

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00032  Score=43.28  Aligned_cols=30  Identities=23%  Similarity=0.636  Sum_probs=25.0

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCCCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNPYL  282 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~  282 (491)
                      ..|..++.|.+..  ++|.|.|++||.||.+.
T Consensus         7 ~~C~~~A~C~Nt~--Gsy~C~C~~Gy~GdG~~   36 (40)
T d1gl4a2           7 HQCSVHAECRDYA--TGFCCRCVANYTGNGRQ   36 (40)
T ss_dssp             GGSCTTEEEEECS--SCEEEEECTTEEECSSS
T ss_pred             CCCCCCCEeecCC--CCeEeECCCCCcCCCCE
Confidence            3688899999764  48999999999999853

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.00012  Score=46.87  Aligned_cols=33  Identities=33%  Similarity=0.865  Sum_probs=24.7

Q ss_pred             CccccccC--CCCccCcCcCCCCCccccCCCCCCC
Q 011189          287 IDECKEKE--RYHCEGTCKNTFGNYTCDCPIGMHG  319 (491)
Q Consensus       287 ~~~C~~~~--~~~c~~~C~n~~g~~~C~C~~g~~~  319 (491)
                      ||||....  ...|...|.|++|+|.|.|+.||..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L   35 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYIL   35 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEE
Confidence            57886532  3568889999999999999999974

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00034  Score=43.24  Aligned_cols=33  Identities=27%  Similarity=0.625  Sum_probs=27.8

Q ss_pred             CccccccCCCCccCcCcCCCCCccccCCCCCCCC
Q 011189          287 IDECKEKERYHCEGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       287 ~~~C~~~~~~~c~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      ++||.. .+..|...|.|++++|.|.|+.||...
T Consensus         2 ~neC~~-~nggC~h~C~n~~g~~~C~C~~Gy~L~   34 (40)
T d3bpse1           2 TNECLD-NNGGCSHVCNDLKIGYECLCPDGFQLV   34 (40)
T ss_dssp             SCGGGT-GGGGCSSEEEECSSSEEEECCTTCCEE
T ss_pred             cccCCC-CCCCCcCEEEcCCCCEEEECCCCCEEC
Confidence            578854 466799999999999999999999753

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0028  Score=38.74  Aligned_cols=27  Identities=30%  Similarity=0.800  Sum_probs=22.8

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      -|..++.|.+..  .+|.|.|++||.|.-
T Consensus        10 PC~ngg~C~~~~--~~y~C~C~~g~~G~~   36 (39)
T d1edmb_          10 PCLNGGSCKDDI--NSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCTTCEEEEET--TEEEEECCTTCCSTT
T ss_pred             CCCCCcEEEcCC--CCEEEECCCCCCCCC
Confidence            688899998755  489999999999863

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0033  Score=38.89  Aligned_cols=29  Identities=28%  Similarity=0.693  Sum_probs=24.8

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      -|..++.|.+.....+|+|.|++||.|.-
T Consensus         5 PC~ngG~C~~~~~~~~y~C~C~~g~~G~~   33 (41)
T d1tpga1           5 RCFNGGTCQQALYFSDFVCQCPEGFAGKS   33 (41)
T ss_dssp             CSCTTCEEEEESSSSCEEEECCTTCBSSS
T ss_pred             CCCCCCEEecCCCCCCeEECCCCCCCCCC
Confidence            58888999877666789999999999974

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.003  Score=39.37  Aligned_cols=28  Identities=21%  Similarity=0.642  Sum_probs=23.3

Q ss_pred             cCCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          251 YRCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       251 ~~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      ..|..++.|.+..  ++|+|.|++||.|.-
T Consensus        11 ~pC~n~g~C~n~~--g~y~C~C~~G~~G~~   38 (42)
T d2vj3a1          11 NPCEHAGKCINTL--GSFECQCLQGYTGPR   38 (42)
T ss_dssp             CSSSTTCEEEECS--SSEEEECCTTEESTT
T ss_pred             CCCCCCcEeECCC--CCEEeECCCCCcCCC
Confidence            3688899999855  489999999999873

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0061  Score=37.15  Aligned_cols=27  Identities=26%  Similarity=0.876  Sum_probs=22.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      -|..++.|.+..  .+|+|.|++||.|.-
T Consensus         8 PC~n~g~C~~~~--~~y~C~C~~G~~G~~   34 (39)
T d2vj3a2           8 PCQNDATCLDQI--GEFQCICMPGYEGVH   34 (39)
T ss_dssp             CCCSSCEEEECS--SCEEEECCTTEESSS
T ss_pred             CCCCCCEEECCC--CCEEEeCCCCCccCc
Confidence            688889998754  489999999999863

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0076  Score=36.68  Aligned_cols=27  Identities=30%  Similarity=0.813  Sum_probs=22.5

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      -|..++.|.+..  .+|.|.|++||.|.-
T Consensus         7 PC~ngg~C~~~~--~~y~C~C~~G~~G~~   33 (39)
T d1xkba1           7 PCQNQGKCKDGL--GEYTCTCLEGFEGKN   33 (39)
T ss_dssp             CCCSSCEECCCS--SSCCEECCTTEETTT
T ss_pred             CCCCCcEEECCC--CCEEEECCCCCCcCc
Confidence            688889998654  589999999999864

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.012  Score=34.76  Aligned_cols=26  Identities=31%  Similarity=0.763  Sum_probs=22.2

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      -|..++.|.+..  .+|.|.|++||.|.
T Consensus         7 PC~ngg~C~~~~--~~y~C~C~~g~~G~   32 (35)
T d2vj3a3           7 PCLHNGRCLDKI--NEFQCECPTGFTGH   32 (35)
T ss_dssp             CSTTTCEEEECS--SCEEEECCTTEESS
T ss_pred             CCCCCcEEECCC--CCeEEECCCCCCCC
Confidence            688899998755  48999999999986

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.84  E-value=0.0017  Score=39.93  Aligned_cols=25  Identities=20%  Similarity=0.713  Sum_probs=22.0

Q ss_pred             cCcCcCCCCCccccCCCCCCCCCcc
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDGKV  323 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~~~  323 (491)
                      +..|.|++|+|.|.|++||.+|+..
T Consensus        12 ~A~C~Nt~Gsy~C~C~~Gy~GdG~~   36 (40)
T d1gl4a2          12 HAECRDYATGFCCRCVANYTGNGRQ   36 (40)
T ss_dssp             TEEEEECSSCEEEEECTTEEECSSS
T ss_pred             CCEeecCCCCeEeECCCCCcCCCCE
Confidence            4579999999999999999998753

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.011  Score=38.62  Aligned_cols=29  Identities=28%  Similarity=0.637  Sum_probs=24.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..+++|.......+|.|.|++||.|.-
T Consensus        13 ~C~NgG~C~~~~~~~~~~C~C~~gy~G~~   41 (53)
T d3egfa_          13 YCLNGGVCMHIESLDSYTCNCVIGYSGDR   41 (53)
T ss_dssp             CSCSSCEEEEESSSSCEEEECCTTCCSSS
T ss_pred             CCCCCcEeeccCCCCCeEeECCCCCcCCC
Confidence            58888999876666789999999999974

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0079  Score=37.56  Aligned_cols=28  Identities=39%  Similarity=0.840  Sum_probs=21.8

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCCCC-Ccc
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNPYL-GCH  285 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~  285 (491)
                      +..|.|..  ++|+|.|++||+.++.. .|.
T Consensus        14 ~~~C~Nt~--G~y~C~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1          14 SGNCVNTP--GSYICDCPPDFELNPTRVGCV   42 (43)
T ss_dssp             TSEEEEET--TEEEEECCTTCEECTTSSBEE
T ss_pred             CCEeECCC--CCEEEecCCCCEECCCCCccc
Confidence            56898766  58999999999987654 454

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.018  Score=37.62  Aligned_cols=23  Identities=30%  Similarity=0.795  Sum_probs=18.6

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCC
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      ...|.|..  ++|+|.|++||+.++
T Consensus        23 ~~~C~Nt~--GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_          23 QHLCHNYV--GGYFCSCRPGYELQE   45 (53)
T ss_dssp             SSEEEEET--TEEEEECSTTCEECT
T ss_pred             cCEeEcCC--CCeEeECCCCCeECC
Confidence            45798866  589999999998655

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.012  Score=36.58  Aligned_cols=25  Identities=24%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             CCCeeecCCCCCCeeeeeCCCCccCCC
Q 011189          255 DNTNCDYSENGEGYRCLCKPGFQGNPY  281 (491)
Q Consensus       255 ~~~~C~~~~~~~g~~C~C~~G~~gn~~  281 (491)
                      .++.|.|..  ++|+|.|++||++++.
T Consensus        15 ~~~~C~Nt~--Gsy~C~C~~Gy~~~g~   39 (43)
T d1emoa1          15 KHGQCINTD--GSYRCECPFGYILAGN   39 (43)
T ss_dssp             SSSCCCCCS--SCCCCCCCTTEEESSS
T ss_pred             CCCEeECCC--CCeEeECCCCcccCCC
Confidence            467788755  5899999999998653

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.33  E-value=0.0086  Score=35.97  Aligned_cols=26  Identities=31%  Similarity=0.931  Sum_probs=22.1

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGN  279 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn  279 (491)
                      -|..++.|.+..  .+|.|.|++||+|.
T Consensus         9 PC~ngg~C~~~~--~~y~C~C~~g~~G~   34 (37)
T d2c4fl1           9 PCQNGGSCKDQL--QSYICFCLPAFEGR   34 (37)
T ss_dssp             CCCTTCEEEEET--TEEEEECCTTEEST
T ss_pred             CCCCCCEEECCC--CCeEEECCCCCcCC
Confidence            588889998754  48999999999986

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.0067  Score=36.97  Aligned_cols=33  Identities=39%  Similarity=1.062  Sum_probs=26.7

Q ss_pred             cCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |+++|.+   .+|  .+.|.+..++|.|.|+.||.|..
T Consensus         2 d~d~C~~---~PC~ngg~C~~~~~~y~C~C~~g~~G~~   36 (39)
T d1edmb_           2 DGDQCES---NPCLNGGSCKDDINSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCTTTT---CCCCTTCEEEEETTEEEEECCTTCCSTT
T ss_pred             ccccCCC---CCCCCCcEEEcCCCCEEEECCCCCCCCC
Confidence            5677853   355  67999999999999999998864

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.012  Score=35.98  Aligned_cols=27  Identities=33%  Similarity=0.827  Sum_probs=22.4

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|.+..  .+|+|.|++||.|.-
T Consensus         8 pC~ngg~C~~~~--~~y~C~C~~g~~G~~   34 (40)
T d1g1sa2           8 SCSKQGECLETI--GNYTCSCYPGFYGPE   34 (40)
T ss_dssp             GGGGSEEEEECS--SSEEEEECTTEESTT
T ss_pred             cCCCCcEEECCC--CCeEEeCCCCccCCC
Confidence            577788998754  489999999999964

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.88  E-value=0.0058  Score=36.76  Aligned_cols=33  Identities=33%  Similarity=0.833  Sum_probs=26.3

Q ss_pred             cCccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          286 DIDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       286 ~~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |+++|.+   .+|  .+.|.+..++|.|.|+.||.|..
T Consensus         1 D~d~C~~---~PC~ngg~C~~~~~~y~C~C~~g~~G~~   35 (37)
T d2c4fl1           1 DGDQCAS---SPCQNGGSCKDQLQSYICFCLPAFEGRN   35 (37)
T ss_dssp             TCCGGGG---CCCCTTCEEEEETTEEEEECCTTEESTT
T ss_pred             CcccCCC---CCCCCCCEEECCCCCeEEECCCCCcCCC
Confidence            5677853   345  67999999999999999998763

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.0098  Score=36.19  Aligned_cols=27  Identities=33%  Similarity=0.891  Sum_probs=22.4

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      -|..++.|.+..  .+|.|.|++||.|.-
T Consensus         8 pC~ngg~C~~~~--~~~~C~C~~g~~G~~   34 (39)
T d1g1ta2           8 SCSGHGECVETI--NNYTCKCDPGFSGLK   34 (39)
T ss_dssp             GGGGSEEEEEET--TEEEEEECTTEESTT
T ss_pred             cCCCCcEEECCC--CCEEEeCCCCCcCcC
Confidence            577889998754  489999999999974

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.01  Score=36.04  Aligned_cols=32  Identities=31%  Similarity=0.855  Sum_probs=25.3

Q ss_pred             CccccccCCCCc--cCcCcCCCCCccccCCCCCCCCC
Q 011189          287 IDECKEKERYHC--EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       287 ~~~C~~~~~~~c--~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      |++|.+   .+|  .+.|.+..++|.|.|++||.|..
T Consensus         1 Id~C~~---~PC~n~g~C~~~~~~y~C~C~~G~~G~~   34 (39)
T d2vj3a2           1 VNECVS---NPCQNDATCLDQIGEFQCICMPGYEGVH   34 (39)
T ss_dssp             CCTTTT---CCCCSSCEEEECSSCEEEECCTTEESSS
T ss_pred             CcCCcC---CCCCCCCEEECCCCCEEEeCCCCCccCc
Confidence            466743   345  67899999999999999998864

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.018  Score=36.77  Aligned_cols=29  Identities=31%  Similarity=0.686  Sum_probs=24.2

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|..++.|.......+|.|.|+.||.|.-
T Consensus        11 ~C~ngG~C~~~~~~~~~~C~C~~gy~G~~   39 (48)
T d1nqlb_          11 YCLHDGVCMYIEALDKYACNCVVGYIGER   39 (48)
T ss_dssp             EECTTCEEEEETTTTEEEEEECTTEESTT
T ss_pred             CCCCCcEEeeeCCCCCeEEeCCCCcccCC
Confidence            58888999876655689999999999974

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.031  Score=34.45  Aligned_cols=27  Identities=41%  Similarity=0.899  Sum_probs=21.0

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPY  281 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~  281 (491)
                      .| .++.|.|..  ++|+|.|++||..++-
T Consensus        11 ~C-~~~~C~Nt~--Gsy~C~C~~Gy~l~~d   37 (42)
T d1lmja2          11 LC-RGGVCHNTE--GSYRCECPPGHQLSPN   37 (42)
T ss_dssp             TT-TTSEEEEET--TEEEEESCTTSCCCSS
T ss_pred             CC-CCCEeECCC--CCeEEeCCCCCeECcC
Confidence            45 367898866  5899999999997653

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.021  Score=35.07  Aligned_cols=28  Identities=39%  Similarity=0.888  Sum_probs=20.3

Q ss_pred             CeeecCCCCCCeeeeeCCCCccCCCC-Cccc
Q 011189          257 TNCDYSENGEGYRCLCKPGFQGNPYL-GCHD  286 (491)
Q Consensus       257 ~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~  286 (491)
                      ..|.+..  ++|+|.|++||+-++-. .|++
T Consensus        12 ~~C~n~~--Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2          12 QLCVNLE--GGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             SCEECSS--SCCEECCCTTEEECTTTCCEEE
T ss_pred             CEeECCC--CCEEeECCCCCeECCCCCcccc
Confidence            3587654  58999999999876643 4554

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.043  Score=33.98  Aligned_cols=24  Identities=21%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCCC
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNPY  281 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~~  281 (491)
                      +..|.|..  ++|+|.|++||..++-
T Consensus        15 ~~~C~Nt~--Gsy~C~C~~Gy~l~~~   38 (43)
T d1uzka2          15 GGKCINTF--GSFQCRCPTGYYLNED   38 (43)
T ss_dssp             TSEEEECS--SCEEEECCTTCCBCTT
T ss_pred             CCEEECCC--CCeEeECCCCCeECcC
Confidence            56898866  5899999999987653

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.20  E-value=0.2  Score=43.89  Aligned_cols=94  Identities=15%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             HHHHHhhccccccceeccCCcceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC-CCccccEEeEEEeCCc
Q 011189          382 AELIKATKNYDKSNFLGEGGFGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN-HKNVVKILGLCLQTKV  460 (491)
Q Consensus       382 ~el~~~t~~~~~~~~lG~G~fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~  460 (491)
                      .++.+....++..+..+.++...||+... +++.+.+|+...... .....+.+|...+..+. +--+-+++......+.
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~-~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~   84 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK-GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGW   84 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcc-cchhhHHHHHHHHHHHhccCCCCcEEEEEecCCc
Confidence            35555556665555444444568998775 555677787654322 22344667888877663 4345677888778888


Q ss_pred             cEEEEeccCCCChhhhh
Q 011189          461 PLLVYEFVSNGTLFHHI  477 (491)
Q Consensus       461 ~~lv~Ey~~~GsL~~~L  477 (491)
                      .++|||++++.++.+..
T Consensus        85 ~~lv~~~l~G~~~~~~~  101 (263)
T d1j7la_          85 SNLLMSEADGVLCSEEY  101 (263)
T ss_dssp             EEEEEECCSSEEHHHHT
T ss_pred             eEEEEEecccccccccc
Confidence            99999999988876543

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.023  Score=35.43  Aligned_cols=26  Identities=23%  Similarity=0.770  Sum_probs=20.7

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|. ++.|.|..  ++|+|.|++||+++.
T Consensus        12 ~C~-~~~C~Nt~--Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1          12 LCG-RGQCVNTP--GDFECKCDEGYESGF   37 (44)
T ss_dssp             TTT-TSCEEEET--TEEEECCCSSEEECT
T ss_pred             CCC-CCEeEcCC--CCeEEeCCCCCccCC
Confidence            453 67898765  589999999999874

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.04  Score=33.44  Aligned_cols=22  Identities=18%  Similarity=0.475  Sum_probs=17.9

Q ss_pred             CeeecCCCCCCeeeeeCCCCccCC
Q 011189          257 TNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       257 ~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      ..|.|..  ++|+|.|++||..++
T Consensus        13 ~~C~N~~--Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3          13 GVCHNLP--GTFECICGPDSALAG   34 (40)
T ss_dssp             SEEEECS--SSEEEEECSSSSCEE
T ss_pred             CEeeCCC--CCeEeECCCCCeeCC
Confidence            4688755  589999999999765

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.043  Score=33.16  Aligned_cols=23  Identities=43%  Similarity=1.131  Sum_probs=20.6

Q ss_pred             cCcCcCCCCCccccCCCCCCCCC
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .+.|.+..++|.|.|++||.|..
T Consensus        11 gg~C~~~~~~y~C~C~~G~~G~~   33 (39)
T d1xkba1          11 QGKCKDGLGEYTCTCLEGFEGKN   33 (39)
T ss_dssp             SCEECCCSSSCCEECCTTEETTT
T ss_pred             CcEEECCCCCEEEECCCCCCcCc
Confidence            67899999999999999998874

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.076  Score=30.57  Aligned_cols=31  Identities=42%  Similarity=1.014  Sum_probs=24.0

Q ss_pred             ccccccCCCCc-cCcCcCCCCCccccCCCCCCCC
Q 011189          288 DECKEKERYHC-EGTCKNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       288 ~~C~~~~~~~c-~~~C~n~~g~~~C~C~~g~~~~  320 (491)
                      +||.-  ..+| .+.|.|..|++.|.|..|+...
T Consensus         2 dECsi--gnpCGnGTCtNviGgFec~C~~GFepg   33 (39)
T d1emoa2           2 DECSV--GNPCGNGTCKNVIGGFECTCEEGFEPG   33 (39)
T ss_dssp             CGGGT--TCSSSSSCEEECSSSEEECCSSSSCCC
T ss_pred             Ccccc--CCccCCceeeecccceEEeecCCcCCC
Confidence            45642  2466 7899999999999999998654

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.049  Score=34.57  Aligned_cols=26  Identities=38%  Similarity=0.991  Sum_probs=22.0

Q ss_pred             CCc-cCcCcCCCCCccccCCCCCCCCC
Q 011189          296 YHC-EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       296 ~~c-~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .+| +|.|.+..++|.|.|+.||.|..
T Consensus        14 ~PC~nG~C~~~~~~y~C~C~~G~~G~~   40 (48)
T d1autl1          14 LCCGHGTCIDGIGSFSCDCRSGWEGRF   40 (48)
T ss_dssp             TTTTSEEECCCSSCCCEEECTTEESTT
T ss_pred             CCCCCCEEECCCCCCeEeCCCCCcCCC
Confidence            345 57899999999999999999874

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.021  Score=36.74  Aligned_cols=32  Identities=22%  Similarity=0.558  Sum_probs=25.0

Q ss_pred             CCCccCcCcCCCCCccccCCCCCCCCCcc-ccc
Q 011189          295 RYHCEGTCKNTFGNYTCDCPIGMHGDGKV-SCQ  326 (491)
Q Consensus       295 ~~~c~~~C~n~~g~~~C~C~~g~~~~~~~-~c~  326 (491)
                      +..|...|.+++++|.|.|+.||...... .|.
T Consensus         6 NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2           6 NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             GGGCSSEEEECSSSEEEECCTTEEECTTSSCEE
T ss_pred             CCCcccEeecCCCCeEEECCCCCEECCCCCccc
Confidence            34678899999999999999999864333 454

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.083  Score=33.44  Aligned_cols=26  Identities=27%  Similarity=0.778  Sum_probs=20.6

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      -|. |+.|.+..  ++|+|.|++||.|.-
T Consensus        15 PC~-nG~C~~~~--~~y~C~C~~G~~G~~   40 (48)
T d1autl1          15 CCG-HGTCIDGI--GSFSCDCRSGWEGRF   40 (48)
T ss_dssp             TTT-SEEECCCS--SCCCEEECTTEESTT
T ss_pred             CCC-CCEEECCC--CCCeEeCCCCCcCCC
Confidence            575 57898654  489999999999864

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.13  Score=29.62  Aligned_cols=30  Identities=37%  Similarity=1.062  Sum_probs=22.9

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCCCCCc
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNPYLGC  284 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~~~gC  284 (491)
                      .|+ |+.|.+..  +||.|.|.+||+.-|-.-|
T Consensus         9 pCG-nGTCtNvi--GgFec~C~~GFepgpmm~C   38 (39)
T d1emoa2           9 PCG-NGTCKNVI--GGFECTCEEGFEPGPMMTC   38 (39)
T ss_dssp             SSS-SSCEEECS--SSEEECCSSSSCCCSSSCC
T ss_pred             ccC-Cceeeecc--cceEEeecCCcCCCcceec
Confidence            344 67788766  5899999999998876543

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.15  E-value=0.036  Score=35.76  Aligned_cols=32  Identities=22%  Similarity=0.534  Sum_probs=24.8

Q ss_pred             CCCccCcCcCCCCCccccCCCCCCCCCcc-ccc
Q 011189          295 RYHCEGTCKNTFGNYTCDCPIGMHGDGKV-SCQ  326 (491)
Q Consensus       295 ~~~c~~~C~n~~g~~~C~C~~g~~~~~~~-~c~  326 (491)
                      +..|...|.+++++|.|.|+.||..+... .|.
T Consensus         5 NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~   37 (51)
T d1kigl_           5 NGGCDQFCREERSEVRCSCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             TTSSSSCCCEETTEECCCCCTTEEECTTSSCEE
T ss_pred             CCCcccEeEcCCCcEEeEcCCCCEECCCCCccc
Confidence            45688899999999999999999754322 454

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.047  Score=32.14  Aligned_cols=23  Identities=30%  Similarity=1.008  Sum_probs=20.4

Q ss_pred             cCcCcCCCCCccccCCCCCCCCC
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      .+.|.+..++|.|.|+.+|.|..
T Consensus        11 gg~C~~~~~~y~C~C~~g~~G~~   33 (35)
T d2vj3a3          11 NGRCLDKINEFQCECPTGFTGHL   33 (35)
T ss_dssp             TCEEEECSSCEEEECCTTEESSS
T ss_pred             CcEEECCCCCeEEECCCCCCCCC
Confidence            67899999999999999998763

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.09  Score=35.51  Aligned_cols=29  Identities=34%  Similarity=0.785  Sum_probs=22.6

Q ss_pred             CCCCCCeeec---CCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDY---SENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~---~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|.+++.|..   .+...+|.|.|++||.|.-
T Consensus        13 ~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~   44 (63)
T d1haea_          13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGAR   44 (63)
T ss_dssp             TSCTTCEEEEEESSSSSCCEEEECCTTEESTT
T ss_pred             cCCCCCEEeecccccCCCCEEeECCCCCCCCC
Confidence            5888899953   2334689999999999975

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=89.72  E-value=0.073  Score=32.69  Aligned_cols=28  Identities=25%  Similarity=0.613  Sum_probs=21.8

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCC-CCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKP-GFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~-G~~gn~  280 (491)
                      -|..++.|.+.. ..+|.|.|+. ||.|.-
T Consensus         9 PC~ngG~C~~~~-~~~y~C~C~~~G~~G~~   37 (42)
T d1q4ga2           9 PCQHQGICVRFG-LDRYQCDCTRTGYSGPN   37 (42)
T ss_dssp             CCCTTCEEEEET-TTEEEEECTTSSEETTT
T ss_pred             CCCCCCEeeeCC-CCCEEEECCCCCcCCcC
Confidence            688899998643 2489999986 999863

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.022  Score=36.85  Aligned_cols=32  Identities=19%  Similarity=0.514  Sum_probs=25.0

Q ss_pred             CCCccCcCcCCCCCccccCCCCCCCCCcc-ccc
Q 011189          295 RYHCEGTCKNTFGNYTCDCPIGMHGDGKV-SCQ  326 (491)
Q Consensus       295 ~~~c~~~C~n~~g~~~C~C~~g~~~~~~~-~c~  326 (491)
                      +..|...|.|++++|.|.|+.||..+... .|.
T Consensus         7 NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1           7 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI   39 (51)
T ss_dssp             GGGCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CCCcccEeecCCCCeEeEcCCCCEECCCCCccc
Confidence            35688899999999999999999854332 454

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.088  Score=32.97  Aligned_cols=28  Identities=25%  Similarity=0.559  Sum_probs=22.0

Q ss_pred             CCCCCCeeecCCCCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      .|.. +.|.......++.|+|++||.|..
T Consensus        13 yC~n-G~C~~~~~~~~~~C~C~~gY~G~R   40 (46)
T d1k36a_          13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVR   40 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTT
T ss_pred             cCcC-CEEEEeCCCCccEeECCCCceecC
Confidence            5664 778765555689999999999974

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.37  E-value=0.087  Score=32.90  Aligned_cols=23  Identities=26%  Similarity=0.671  Sum_probs=18.0

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCC
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~  280 (491)
                      ...|.+..  ++|+|.|++||+-++
T Consensus        15 ~~~C~Nt~--gsy~C~C~~Gy~L~~   37 (45)
T d1nt0a3          15 DHYCHNYL--GGYYCSCRVGYILHQ   37 (45)
T ss_dssp             SSEEEEET--TEEEEECCTTEEECT
T ss_pred             CCEeecCC--CCEEEeCCCCCEECC
Confidence            45788755  589999999997554

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.092  Score=32.77  Aligned_cols=29  Identities=21%  Similarity=0.679  Sum_probs=20.4

Q ss_pred             CCeeecCCCCCCeeeeeCCCCccCCCC-Cccc
Q 011189          256 NTNCDYSENGEGYRCLCKPGFQGNPYL-GCHD  286 (491)
Q Consensus       256 ~~~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~  286 (491)
                      ...|.+..  ++|+|.|++||+-+.-. .|.|
T Consensus        15 ~~~C~Nt~--Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2          15 DHHCHNHL--GGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             SSEEEEET--TEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCccCC--CCeEEECCCCCeECCCCCCccC
Confidence            45788755  58999999999865432 3443

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.099  Score=33.41  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=20.6

Q ss_pred             CCCccCcC------cCCCCCccccCCCCCCCC
Q 011189          295 RYHCEGTC------KNTFGNYTCDCPIGMHGD  320 (491)
Q Consensus       295 ~~~c~~~C------~n~~g~~~C~C~~g~~~~  320 (491)
                      +..|...|      .++.++|.|.|+.||...
T Consensus        11 NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~   42 (50)
T d1ijqa2          11 NGGCQYLCLPAPQINPHSPKFTCACPDGMLLA   42 (50)
T ss_dssp             GGGCSSEEEECCCCSTTCCSEEEECCTTCEEC
T ss_pred             CCCCcCccCCCcCcccCCCCEEEeCCCCCEEC
Confidence            44678888      466789999999999754

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.76  E-value=0.14  Score=31.14  Aligned_cols=28  Identities=29%  Similarity=0.786  Sum_probs=21.5

Q ss_pred             CCCCCCeeecCCCCCCeeeeeC-CCCccCC
Q 011189          252 RCGDNTNCDYSENGEGYRCLCK-PGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~~~~g~~C~C~-~G~~gn~  280 (491)
                      -|..++.|.+... .+|+|.|+ .||.|.-
T Consensus         8 PC~ngG~C~~~~~-~~y~C~C~~~gy~G~~   36 (41)
T d1cvua2           8 PCQNRGECMSTGF-DQYKCDCTRTGFYGEN   36 (41)
T ss_dssp             CCCTTCEEEEEET-TEEEEECTTSSEETTT
T ss_pred             CCCCCCEEEECCC-CCEEEeCcCCCcCCcC
Confidence            6888999976432 47999997 5999863

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.14  E-value=0.11  Score=33.37  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=22.1

Q ss_pred             eecCCCCCCeeeeeCCCCccCCCC-CcccCccc
Q 011189          259 CDYSENGEGYRCLCKPGFQGNPYL-GCHDIDEC  290 (491)
Q Consensus       259 C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~C  290 (491)
                      |.+..  ++|+|.|++||+-++-. .|.++++|
T Consensus        12 C~~~~--~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_          12 CREER--SEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             CCEET--TEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             eEcCC--CcEEeEcCCCCEECCCCCccccCCcc
Confidence            55543  58999999999876644 77777665

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=84.92  E-value=0.74  Score=39.74  Aligned_cols=75  Identities=17%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             eccCC-cceEEEEEEcCCcEEEEEeccccchhhHHHHHHHHHHHHHcCC--CCccccEEeEEEeCCccEEEEeccCCCCh
Q 011189          397 LGEGG-FGSVYRGVLSDDTQVAVKKPKEADKIRVSQEFQHEMGIVSQIN--HKNVVKILGLCLQTKVPLLVYEFVSNGTL  473 (491)
Q Consensus       397 lG~G~-fG~V~~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  473 (491)
                      +..|. -+.||+...+++..+.+|.......    ..+..|++.++.+.  .-.+.++++.....+..++||||+++.++
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~----~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL----NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCTT----SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccCH----hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            34444 3678988877777788887654432    23556777776663  33356788887788888999999987666


Q ss_pred             hh
Q 011189          474 FH  475 (491)
Q Consensus       474 ~~  475 (491)
                      .+
T Consensus        94 ~~   95 (255)
T d1nd4a_          94 LS   95 (255)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.19  Score=30.69  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=17.6

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCC
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPY  281 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~  281 (491)
                      .|.+..  ++|+|.|++||+-++-
T Consensus        14 ~C~n~~--Gsy~C~C~~Gy~L~~d   35 (42)
T d1nzia2          14 FCNNFI--GGYFCSCPPEYFLHDD   35 (42)
T ss_dssp             EEEEET--TEEEEECCTTCEECTT
T ss_pred             EeecCC--CCEEEeCCCCCEECCC
Confidence            687755  5899999999986653

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.081  Score=32.09  Aligned_cols=23  Identities=48%  Similarity=1.037  Sum_probs=20.4

Q ss_pred             cCcCcCCCCCccccCCCCCCCCC
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      ++.|.+..++|.|.|+.||.|..
T Consensus        12 gg~C~~~~~~y~C~C~~g~~G~~   34 (40)
T d1g1sa2          12 QGECLETIGNYTCSCYPGFYGPE   34 (40)
T ss_dssp             SEEEEECSSSEEEEECTTEESTT
T ss_pred             CcEEECCCCCeEEeCCCCccCCC
Confidence            67899999999999999998864

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.057  Score=32.61  Aligned_cols=23  Identities=43%  Similarity=0.946  Sum_probs=20.4

Q ss_pred             cCcCcCCCCCccccCCCCCCCCC
Q 011189          299 EGTCKNTFGNYTCDCPIGMHGDG  321 (491)
Q Consensus       299 ~~~C~n~~g~~~C~C~~g~~~~~  321 (491)
                      ++.|.+..++|.|.|++||.|..
T Consensus        12 gg~C~~~~~~~~C~C~~g~~G~~   34 (39)
T d1g1ta2          12 HGECVETINNYTCKCDPGFSGLK   34 (39)
T ss_dssp             SEEEEEETTEEEEEECTTEESTT
T ss_pred             CcEEECCCCCEEEeCCCCCcCcC
Confidence            67899999999999999998873

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.61  E-value=0.44  Score=30.20  Aligned_cols=30  Identities=30%  Similarity=0.566  Sum_probs=21.5

Q ss_pred             eeecCCCCCCeeeeeCCCCccCCCC-CcccCcc
Q 011189          258 NCDYSENGEGYRCLCKPGFQGNPYL-GCHDIDE  289 (491)
Q Consensus       258 ~C~~~~~~~g~~C~C~~G~~gn~~~-gC~~~~~  289 (491)
                      .|.+..  ++|+|.|++||+-++.. .|.+.++
T Consensus        12 ~C~~~~--g~~~C~C~~Gy~L~~D~~tC~~~~~   42 (50)
T d1autl2          12 YCLEEV--GWRRCSCAPGYKLGDDLLQCHPAVK   42 (50)
T ss_dssp             EEEECS--SSEEEECCTTEEECTTSSCEEECSS
T ss_pred             EeecCC--CCeEEECCCCCEECCCCCccccCCC
Confidence            576654  48999999999877644 5665443

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=0.67  Score=26.75  Aligned_cols=29  Identities=21%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             CCCCCCeeecCC-CCCCeeeeeCCCCccCC
Q 011189          252 RCGDNTNCDYSE-NGEGYRCLCKPGFQGNP  280 (491)
Q Consensus       252 ~C~~~~~C~~~~-~~~g~~C~C~~G~~gn~  280 (491)
                      .|.+.+.|.... -..-.+|.||++|.|.-
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~H   32 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQH   32 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTT
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCcee
Confidence            355677785321 12467899999999864