Query 011190
Match_columns 491
No_of_seqs 294 out of 2282
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 6.1E-58 1.3E-62 481.1 38.0 343 29-489 63-422 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 6.9E-55 1.5E-59 441.6 34.7 301 84-489 1-302 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 1.9E-54 4.1E-59 436.7 32.5 293 80-488 1-293 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 7.3E-54 1.6E-58 432.4 32.2 292 90-488 1-292 (316)
5 cd05487 renin_like Renin stimu 100.0 1.8E-53 3.9E-58 431.3 34.7 300 82-488 1-301 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 2.3E-53 5.1E-58 430.8 34.3 303 80-488 2-305 (329)
7 cd05488 Proteinase_A_fungi Fun 100.0 1.2E-52 2.6E-57 424.2 33.3 296 80-488 1-296 (320)
8 cd05478 pepsin_A Pepsin A, asp 100.0 1.7E-52 3.6E-57 422.7 33.6 292 81-488 2-293 (317)
9 cd05477 gastricsin Gastricsins 100.0 4.8E-52 1E-56 419.5 34.0 292 87-488 1-293 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1E-50 2.2E-55 423.4 36.9 297 76-488 126-424 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 3E-49 6.4E-54 411.7 36.4 297 76-488 125-423 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 4.2E-47 9.1E-52 382.4 24.8 291 89-488 1-292 (317)
13 KOG1339 Aspartyl protease [Pos 100.0 9.7E-45 2.1E-49 376.6 28.2 295 79-489 36-367 (398)
14 cd06097 Aspergillopepsin_like 100.0 1.8E-42 3.9E-47 343.2 27.7 220 90-317 1-226 (278)
15 cd05473 beta_secretase_like Be 100.0 4.7E-42 1E-46 352.9 28.4 223 88-318 2-240 (364)
16 PLN03146 aspartyl protease fam 100.0 3.2E-41 7E-46 352.5 31.5 216 86-317 81-335 (431)
17 cd05474 SAP_like SAPs, pepsin- 100.0 1.4E-40 3E-45 332.2 28.5 249 89-479 2-266 (295)
18 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.3E-40 4.9E-45 335.5 25.9 215 88-313 2-255 (326)
19 cd05472 cnd41_like Chloroplast 100.0 7.7E-40 1.7E-44 327.7 25.0 191 89-318 1-200 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 2.1E-38 4.6E-43 313.6 30.5 227 90-318 1-231 (283)
21 cd05475 nucellin_like Nucellin 100.0 2.9E-36 6.3E-41 297.9 26.4 184 88-306 1-194 (273)
22 cd05476 pepsin_A_like_plant Ch 100.0 6.3E-36 1.4E-40 294.3 23.6 177 89-305 1-192 (265)
23 cd05489 xylanase_inhibitor_I_l 100.0 5.3E-34 1.2E-38 291.9 26.5 213 96-318 2-258 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 3.8E-22 8.3E-27 169.3 13.5 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 1.6E-20 3.5E-25 171.2 15.7 136 90-248 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.0 8.9E-10 1.9E-14 100.2 9.6 51 268-318 1-58 (161)
27 PF05184 SapB_1: Saposin-like 98.3 4.9E-07 1.1E-11 61.5 3.5 39 385-423 1-39 (39)
28 cd05483 retropepsin_like_bacte 98.1 1.1E-05 2.4E-10 65.9 6.8 92 89-202 2-94 (96)
29 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0021 4.6E-08 55.4 10.6 101 80-202 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.6 0.013 2.7E-07 46.9 7.9 88 92-201 1-89 (90)
31 PF03489 SapB_2: Saposin-like 95.6 0.0019 4.2E-08 42.6 -1.1 34 323-356 2-35 (35)
32 PF11925 DUF3443: Protein of u 95.4 0.17 3.8E-06 51.1 11.4 195 90-306 24-272 (370)
33 cd05479 RP_DDI RP_DDI; retrope 95.2 0.18 3.8E-06 43.5 9.5 90 87-201 14-106 (124)
34 COG3577 Predicted aspartyl pro 94.9 0.26 5.7E-06 45.7 10.1 105 76-202 92-197 (215)
35 smart00741 SapB Saposin (B) Do 94.6 0.043 9.2E-07 42.2 3.8 46 387-435 2-47 (76)
36 cd05484 retropepsin_like_LTR_2 94.3 0.23 4.9E-06 40.2 7.5 76 90-183 1-79 (91)
37 cd06095 RP_RTVL_H_like Retrope 92.8 0.66 1.4E-05 37.1 7.8 81 93-202 2-84 (86)
38 KOG1340 Prosaposin [Lipid tran 91.9 0.29 6.3E-06 46.3 5.2 111 307-435 63-174 (218)
39 KOG1340 Prosaposin [Lipid tran 87.7 0.57 1.2E-05 44.4 3.6 46 384-434 35-80 (218)
40 PF07172 GRP: Glycine rich pro 87.5 0.41 8.9E-06 39.2 2.2 26 1-26 1-26 (95)
41 PF13975 gag-asp_proteas: gag- 86.0 1.2 2.7E-05 34.3 4.1 33 87-121 6-38 (72)
42 PF07966 A1_Propeptide: A1 Pro 80.5 1.3 2.8E-05 27.8 1.8 24 30-53 1-24 (29)
43 PF00077 RVP: Retroviral aspar 75.4 3.7 8E-05 33.4 3.7 29 91-121 7-35 (100)
44 TIGR02281 clan_AA_DTGA clan AA 74.7 6.8 0.00015 33.5 5.3 37 265-311 8-44 (121)
45 PF13650 Asp_protease_2: Aspar 71.5 4.8 0.0001 31.6 3.4 29 276-311 3-31 (90)
46 PF13975 gag-asp_proteas: gag- 66.0 9.6 0.00021 29.2 3.9 29 276-311 13-41 (72)
47 smart00741 SapB Saposin (B) Do 66.0 1.8 4E-05 32.8 -0.2 36 321-356 41-76 (76)
48 cd05482 HIV_retropepsin_like R 62.7 9.3 0.0002 30.8 3.3 27 93-121 2-28 (87)
49 PF09668 Asp_protease: Asparty 62.0 15 0.00032 31.7 4.6 79 88-182 23-103 (124)
50 cd05484 retropepsin_like_LTR_2 61.5 10 0.00022 30.4 3.4 30 276-312 5-34 (91)
51 cd05483 retropepsin_like_bacte 58.8 15 0.00034 29.0 4.1 29 276-311 7-35 (96)
52 cd06095 RP_RTVL_H_like Retrope 54.1 14 0.00031 29.3 3.1 29 276-311 3-31 (86)
53 PF12384 Peptidase_A2B: Ty3 tr 50.5 21 0.00044 32.3 3.7 29 91-119 34-62 (177)
54 PF14201 DUF4318: Domain of un 50.2 21 0.00045 27.8 3.3 47 405-458 14-60 (74)
55 cd05479 RP_DDI RP_DDI; retrope 48.0 21 0.00045 30.6 3.4 29 276-311 21-49 (124)
56 PF08284 RVP_2: Retroviral asp 47.2 1.1E+02 0.0023 26.7 7.8 28 89-118 21-48 (135)
57 PRK02710 plastocyanin; Provisi 38.8 38 0.00083 28.8 3.6 35 1-35 1-35 (119)
58 COG3577 Predicted aspartyl pro 37.7 55 0.0012 30.7 4.6 37 266-312 103-139 (215)
59 TIGR03698 clan_AA_DTGF clan AA 37.2 25 0.00054 29.3 2.1 22 290-311 17-39 (107)
60 cd06094 RP_Saci_like RP_Saci_l 36.9 2.3E+02 0.0049 23.0 7.4 64 101-182 8-73 (89)
61 PHA01810 hypothetical protein 36.2 41 0.00089 25.9 2.9 26 392-417 53-78 (100)
62 PF00077 RVP: Retroviral aspar 36.0 30 0.00066 27.9 2.5 26 276-308 10-35 (100)
63 PF12091 DUF3567: Protein of u 34.0 54 0.0012 26.2 3.3 34 390-423 46-79 (85)
64 COG5550 Predicted aspartyl pro 32.4 28 0.00062 29.8 1.7 21 292-312 29-50 (125)
65 PF09668 Asp_protease: Asparty 30.7 60 0.0013 28.0 3.4 29 276-311 29-57 (124)
66 PF12674 Zn_ribbon_2: Putative 30.3 96 0.0021 24.6 4.3 44 380-423 21-78 (81)
67 TIGR03698 clan_AA_DTGF clan AA 29.7 61 0.0013 26.9 3.3 66 92-173 2-73 (107)
68 cd05481 retropepsin_like_LTR_1 29.4 54 0.0012 26.5 2.8 23 290-312 11-33 (93)
69 COG3526 Uncharacterized protei 28.9 83 0.0018 24.9 3.5 43 384-435 9-56 (99)
70 PF07803 GSG-1: GSG1-like prot 25.2 83 0.0018 26.7 3.2 24 1-24 2-25 (118)
71 PF00085 Thioredoxin: Thioredo 20.3 2.4E+02 0.0053 22.0 5.2 51 385-452 26-85 (103)
72 cd05471 pepsin_like Pepsin-lik 20.1 1.3E+02 0.0028 28.9 4.1 44 78-121 170-221 (283)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.1e-58 Score=481.14 Aligned_cols=343 Identities=38% Similarity=0.678 Sum_probs=283.6
Q ss_pred ceEEEeeeecCCChhhhhhhcchhhhhHHHHhhhhccCCCCCCCCCCCcceeeeeecCCceEEEEEEEcCCCceEEEEEe
Q 011190 29 GLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFD 108 (491)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lD 108 (491)
.++|+||+|..+.++++.+.+...-..+.+. .+++...+. ........+||.|+.|.+|+++|+||||||+|.|++|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D 139 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT--KHKYLETKD-PNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD 139 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhh--ccccccccc-cccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence 5899999998777655443311000000000 111111000 0001346799999999999999999999999999999
Q ss_pred CCCCceeeeCCCCCCCccccCCCCCCCCCCCccee--cCc---eEEEEecCceEEEEEEEEEEEECcEeecccEEEEEEe
Q 011190 109 TGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK--NGE---SASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATR 183 (491)
Q Consensus 109 TGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~--~~~---~~~~~Yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~ 183 (491)
|||+++||++..|. ..+|..|+.|||++|+||+. .+. .+.+.||+|++.|.+++|+|++|+..+++|.||+++.
T Consensus 140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~ 218 (482)
T PTZ00165 140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE 218 (482)
T ss_pred CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence 99999999999997 56899999999999999998 555 6789999999999999999999999999999999998
Q ss_pred cCCcccccccccccccCccccc---cCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEECccCCCCC--ccce
Q 011190 184 EPGVTFMVAKFDGILGLGFQEI---SVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHY--KGKH 258 (491)
Q Consensus 184 ~~~~~~~~~~~~GIlGLg~~~~---s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fGgiD~~~~--~G~l 258 (491)
.++..|....+|||||||++.. +.....|++++|++||+|++++||+||.+..+ .+|+|+|||+|++++ .|++
T Consensus 219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i 296 (482)
T PTZ00165 219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKI 296 (482)
T ss_pred ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCce
Confidence 7665676678899999999877 33457889999999999999999999986532 379999999999877 5789
Q ss_pred eEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccchhhhccchhhhh
Q 011190 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILD 338 (491)
Q Consensus 259 ~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~~~~~~g~~~i~ 338 (491)
.|+|+.+..||+|.+++|.||++.+..+...+.|++||||+++++|.+++++|.+++++.
T Consensus 297 ~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------------- 356 (482)
T PTZ00165 297 WWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------------- 356 (482)
T ss_pred EEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------------
Confidence 999999999999999999999988766667789999999999999999999999998765
Q ss_pred hhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhchhHHHHHHHHHhh
Q 011190 339 LLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNEL 418 (491)
Q Consensus 339 ~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (491)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCceeecCcCCCCCCcEEEEECCE-----EEeeCcCccEEEeC--CCCcceeeeceeeccCCCCCCCeeEE
Q 011190 419 CDRMPSPMGESAVDCGKLSSMPIVSFTIGGK-----VFDLSPEEYILKVG--EGPEAQCISGFTAMDVPPPRGPLWYS 489 (491)
Q Consensus 419 ~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~-----~~~l~~~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~ 489 (491)
.+|+++..+|+|+|+|+|. +|+|+|++|+++.. ..+...|+++|+++|.|.+.||.||-
T Consensus 357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~IL 422 (482)
T PTZ00165 357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVL 422 (482)
T ss_pred ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEE
Confidence 1898888999999999864 89999999999852 33457899999999999888999973
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6.9e-55 Score=441.57 Aligned_cols=301 Identities=53% Similarity=1.034 Sum_probs=266.0
Q ss_pred ecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCC-CccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEE
Q 011190 84 NYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFS 162 (491)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~-~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~ 162 (491)
|+.|.+|+++|.||||||++.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4668999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EEEEEECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCe
Q 011190 163 YDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGG 242 (491)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G 242 (491)
+|+|++|+..++++.||+++..++..+....++||||||++..+.....|++++|++||.|++++||+||.+..+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999887777788999999999999999999998754333479
Q ss_pred eEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceee
Q 011190 243 EIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVS 322 (491)
Q Consensus 243 ~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~ 322 (491)
+|+|||+|+++|.|++.|+|+.+..+|.|.+++|.||+... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999988899999999999998743 2345678999999999999999999999998754
Q ss_pred cccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHh
Q 011190 323 QQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQL 402 (491)
Q Consensus 323 ~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCCCC
Q 011190 403 QQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPP 482 (491)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~ 482 (491)
+...+.|.++|+....+|.|+|+|+|+.|+|+|++|+++....+...|+++|+++|.+++
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 223567899999988999999999999999999999998765445689999999998877
Q ss_pred CCCeeEE
Q 011190 483 RGPLWYS 489 (491)
Q Consensus 483 ~~~~~~~ 489 (491)
.++.||-
T Consensus 296 ~~~~~il 302 (325)
T cd05490 296 AGPLWIL 302 (325)
T ss_pred CCceEEE
Confidence 7778873
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.9e-54 Score=436.72 Aligned_cols=293 Identities=84% Similarity=1.445 Sum_probs=262.8
Q ss_pred eeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEE
Q 011190 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAG 159 (491)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G 159 (491)
++|.|+.|.+|+++|+||||||++.|+|||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 47889999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEEEEEECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCC
Q 011190 160 FFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (491)
Q Consensus 160 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~ 239 (491)
.+++|+|++|+..++++.||++....+..+....++||||||++..+.....+++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666678999999999887767788999999999999999999998754333
Q ss_pred CCeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCc
Q 011190 240 EGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (491)
Q Consensus 240 ~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~ 319 (491)
..|+|+|||+|+++|.|+++|+|+...++|.|.+++|.|+++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 4799999999999999999999999889999999999999998766666788999999999999998766542
Q ss_pred eeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHH
Q 011190 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (491)
Q Consensus 320 ~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccC
Q 011190 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDV 479 (491)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 479 (491)
|.++|+..+.+|.|+|+|+|+.|+|+|++|+++..++....|+++|++++.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 234899888999999999999999999999998766555789999999998
Q ss_pred CCCCCCeeE
Q 011190 480 PPPRGPLWY 488 (491)
Q Consensus 480 ~~~~~~~~~ 488 (491)
+.+.++.||
T Consensus 285 ~~~~~~~~I 293 (317)
T cd06098 285 PPPRGPLWI 293 (317)
T ss_pred CCCCCCeEE
Confidence 777778887
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.3e-54 Score=432.36 Aligned_cols=292 Identities=49% Similarity=0.942 Sum_probs=260.4
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEEEEC
Q 011190 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVG 169 (491)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ig 169 (491)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 5679989999999999999999999999999999999999999999
Q ss_pred cEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEECcc
Q 011190 170 DLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGV 249 (491)
Q Consensus 170 ~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fGgi 249 (491)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|+.++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877655445556789999999998877677889999999999999999999987543334799999999
Q ss_pred CCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccchhh
Q 011190 250 DPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVV 329 (491)
Q Consensus 250 D~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~~~ 329 (491)
|+++|.|++.|+|+.+.++|.|.+++|.|+++.+. ......++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998763 345678999999999999999999999988765
Q ss_pred hccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhchhHH
Q 011190 330 EQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQE 409 (491)
Q Consensus 330 ~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (491)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCCCCCCCeeE
Q 011190 410 NILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWY 488 (491)
Q Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 488 (491)
...|.|.++|+....+|+|+|+|+|+.|+|+|++|++.....+...|+++|++++..++.++.||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 292 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWI 292 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEE
Confidence 12466889999888999999999999999999999998643344689999999987766677887
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.8e-53 Score=431.32 Aligned_cols=300 Identities=46% Similarity=0.938 Sum_probs=266.3
Q ss_pred eeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCC-ccccCCCCCCCCCCCcceecCceEEEEecCceEEEE
Q 011190 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFS-VACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (491)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~-~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~ 160 (491)
|.|+.|..|+++|+||||+|+++|++||||+++||++..|... ..|..++.|+|++|+||+..++.+.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 4678899999999999999999999999999999999999632 478889999999999999999999999999999999
Q ss_pred EEEEEEEECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCC
Q 011190 161 FSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (491)
Q Consensus 161 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~ 240 (491)
+++|+|++|+..+. +.||++.......+....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999999885 88999987654445556789999999988776677889999999999999999999987643344
Q ss_pred CeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCce
Q 011190 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (491)
Q Consensus 241 ~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~ 320 (491)
.|+|+|||+|+++|.|+++|+|+...++|+|.++++.|+++.+. ...+..++|||||+++++|.+++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999998764 3456789999999999999999999999998761
Q ss_pred eecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHH
Q 011190 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (491)
Q Consensus 321 ~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCC
Q 011190 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480 (491)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~ 480 (491)
..+.|.++|+....+|.|+|+|+|.+|+|++++|+++..+.....|+++|+++|.+
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 14568899999889999999999999999999999987655567899999999987
Q ss_pred CCCCCeeE
Q 011190 481 PPRGPLWY 488 (491)
Q Consensus 481 ~~~~~~~~ 488 (491)
++.++.||
T Consensus 294 ~~~~~~~i 301 (326)
T cd05487 294 PPTGPLWV 301 (326)
T ss_pred CCCCCeEE
Confidence 67778887
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.3e-53 Score=430.84 Aligned_cols=303 Identities=56% Similarity=1.058 Sum_probs=269.3
Q ss_pred eeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCC-ccccCCCCCCCCCCCcceecCceEEEEecCceEE
Q 011190 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFS-VACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA 158 (491)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~-~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~ 158 (491)
.+|.|+.|.+|+++|+||||+|++.|++||||+++||++..|..+ ..|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 478999999999999999999999999999999999999999632 3688888999999999999999999999999999
Q ss_pred EEEEEEEEEECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCC
Q 011190 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQE 238 (491)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~ 238 (491)
|.+++|++++|+..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988766777889999999999999999999875443
Q ss_pred CCCeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCC
Q 011190 239 DEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (491)
Q Consensus 239 ~~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~ 318 (491)
...|+|+|||+|+++|.|+++|+|+...++|.|.++++.++++.+. .....++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 3479999999999999999999999989999999999999998753 45678999999999999999999999998765
Q ss_pred ceeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHH
Q 011190 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (491)
Q Consensus 319 ~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeecc
Q 011190 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (491)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~ 478 (491)
...+.|.++|+..+.+|.|+|+|+|+.|.|+|++|+++....+...|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 1135688999988889999999999999999999999986555578999999988
Q ss_pred CCCCCCCeeE
Q 011190 479 VPPPRGPLWY 488 (491)
Q Consensus 479 ~~~~~~~~~~ 488 (491)
.++..++.||
T Consensus 296 ~~~~~~~~~I 305 (329)
T cd05485 296 IPPPAGPLWI 305 (329)
T ss_pred CCCCCCCeEE
Confidence 8776777787
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.2e-52 Score=424.23 Aligned_cols=296 Identities=50% Similarity=0.939 Sum_probs=264.2
Q ss_pred eeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEE
Q 011190 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAG 159 (491)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G 159 (491)
+||.|+.+..|+++|+||||+|++.|++||||+++||++..|. ...|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4788999999999999999999999999999999999999996 567988899999999999999999999999999999
Q ss_pred EEEEEEEEECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCC
Q 011190 160 FFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (491)
Q Consensus 160 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~ 239 (491)
.+++|++++|+..++++.|+++....+..+....++||||||++..+.....+.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544555567999999999887666677888999999999999999999753 2
Q ss_pred CCeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCc
Q 011190 240 EGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (491)
Q Consensus 240 ~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~ 319 (491)
..|.|+|||+|+++|.|+++|+|+...++|.|.+++|.||++.+.. ....++|||||+++++|++++++|.+++++.
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~- 234 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAK- 234 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCc-
Confidence 3799999999999999999999999889999999999999987643 4568999999999999999999999998765
Q ss_pred eeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHH
Q 011190 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (491)
Q Consensus 320 ~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
T Consensus 235 -------------------------------------------------------------------------------- 234 (320)
T cd05488 235 -------------------------------------------------------------------------------- 234 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccC
Q 011190 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDV 479 (491)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 479 (491)
....+.|.++|++...+|.|+|+|+|++|.|+|++|+++.+ ..|++.|++.+.
T Consensus 235 -----------------------~~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~ 287 (320)
T cd05488 235 -----------------------KSWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDF 287 (320)
T ss_pred -----------------------cccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcC
Confidence 12256788999998899999999999999999999998642 469999999987
Q ss_pred CCCCCCeeE
Q 011190 480 PPPRGPLWY 488 (491)
Q Consensus 480 ~~~~~~~~~ 488 (491)
+...++.||
T Consensus 288 ~~~~~~~~i 296 (320)
T cd05488 288 PEPVGPLAI 296 (320)
T ss_pred CCCCCCeEE
Confidence 765667786
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.7e-52 Score=422.69 Aligned_cols=292 Identities=50% Similarity=0.923 Sum_probs=259.7
Q ss_pred eeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEE
Q 011190 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (491)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~ 160 (491)
||.|+.+..|+++|.||||+|++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4579889999999999999999999999999999999
Q ss_pred EEEEEEEECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCC
Q 011190 161 FSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (491)
Q Consensus 161 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~ 240 (491)
+++|+|++|+..++++.||++....+..+....++||||||++..+..+..+++++|+++|+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987654323334579999999988876677889999999999999999999987632 3
Q ss_pred CeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCce
Q 011190 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (491)
Q Consensus 241 ~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~ 320 (491)
.|+|+|||+|+++|.|+++|+|+....+|.|.++++.||++.+. ...+..++|||||+++++|++++++|++++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999999874 3356789999999999999999999999997651
Q ss_pred eecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHH
Q 011190 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (491)
Q Consensus 321 ~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCC
Q 011190 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480 (491)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~ 480 (491)
...+.|.++|+....+|.|+|+|+|++|+|+|++|+.+. ...|+++|+..+.
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~~- 288 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMGL- 288 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCCC-
Confidence 125678899999889999999999999999999999875 2679999987642
Q ss_pred CCCCCeeE
Q 011190 481 PPRGPLWY 488 (491)
Q Consensus 481 ~~~~~~~~ 488 (491)
++.||
T Consensus 289 ---~~~~I 293 (317)
T cd05478 289 ---GELWI 293 (317)
T ss_pred ---CCeEE
Confidence 35676
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.8e-52 Score=419.51 Aligned_cols=292 Identities=48% Similarity=0.933 Sum_probs=259.7
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEE
Q 011190 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSV 166 (491)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v 166 (491)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 5579989999999999999999999999999999999999999
Q ss_pred EECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEE
Q 011190 167 KVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVF 246 (491)
Q Consensus 167 ~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~f 246 (491)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999865544444567999999999887777788999999999999999999998753 223799999
Q ss_pred CccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccc
Q 011190 247 GGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCK 326 (491)
Q Consensus 247 GgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~ 326 (491)
||+|+++|.|++.|+|+.+.++|.|.+++|.|++..+..+..+..++|||||+++++|++++++|++.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999889999999999999988765556678999999999999999999999999776
Q ss_pred hhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhch
Q 011190 327 AVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQ 406 (491)
Q Consensus 327 ~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCCCCCC-C
Q 011190 407 TQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRG-P 485 (491)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~-~ 485 (491)
....+.|.++|+....+|.|+|+|+|+++.|+|++|+.+. ...|+++|++.+.|...| +
T Consensus 231 ----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 231 ----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred ----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 1235678999999889999999999999999999999874 257999999887765444 4
Q ss_pred eeE
Q 011190 486 LWY 488 (491)
Q Consensus 486 ~~~ 488 (491)
.||
T Consensus 291 ~~i 293 (318)
T cd05477 291 LWI 293 (318)
T ss_pred eEE
Confidence 676
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1e-50 Score=423.43 Aligned_cols=297 Identities=33% Similarity=0.633 Sum_probs=256.8
Q ss_pred CcceeeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCc
Q 011190 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (491)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~g 155 (491)
....++|.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 56789999999999999999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred eEEEEEEEEEEEECcEeecccEEEEEEecCCc--ccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeC
Q 011190 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (491)
Q Consensus 156 s~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~--~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~ 233 (491)
+++|.+++|+|++|+.+++ ..|+++....+. .+....++||||||++..+.....|++.+|++||+|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999998 568877765432 2334568999999999887777788999999999999999999998
Q ss_pred CCCCCCCCeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHH
Q 011190 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (491)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~ 313 (491)
+.+. ..|.|+|||+|+++|.|++.|+|+....+|.|.++ +.+++.. .....|+|||||+++++|+++++++.+
T Consensus 284 ~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHHH
Confidence 6532 37999999999999999999999988899999998 4777643 245789999999999999999999999
Q ss_pred HhCCCceeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHH
Q 011190 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (491)
Q Consensus 314 ~l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
++++...
T Consensus 357 ~l~~~~~------------------------------------------------------------------------- 363 (453)
T PTZ00147 357 SLDVFKV------------------------------------------------------------------------- 363 (453)
T ss_pred HhCCeec-------------------------------------------------------------------------
Confidence 9976510
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeec
Q 011190 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISG 473 (491)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~ 473 (491)
...+.|.++|+. ..+|.|+|.|+|..|+|+|++|+......+...|+++
T Consensus 364 ------------------------------~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 364 ------------------------------PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred ------------------------------CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 123568889996 5799999999999999999999987655455789999
Q ss_pred eeeccCCCCCCCeeE
Q 011190 474 FTAMDVPPPRGPLWY 488 (491)
Q Consensus 474 ~~~~~~~~~~~~~~~ 488 (491)
|++.|.+ ++.||
T Consensus 413 i~~~~~~---~~~~I 424 (453)
T PTZ00147 413 IIPIDLE---KNTFI 424 (453)
T ss_pred EEECCCC---CCCEE
Confidence 9988753 24576
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3e-49 Score=411.67 Aligned_cols=297 Identities=31% Similarity=0.641 Sum_probs=253.9
Q ss_pred CcceeeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCc
Q 011190 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (491)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~g 155 (491)
....++|.|+.+.+|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 56679999999999999999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred eEEEEEEEEEEEECcEeecccEEEEEEecCC--cccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeC
Q 011190 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPG--VTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (491)
Q Consensus 156 s~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~ 233 (491)
++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||+|++++||+||.
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57777765432 12344568999999999887767788999999999999999999998
Q ss_pred CCCCCCCCeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHH
Q 011190 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (491)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~ 313 (491)
+.+ ...|.|+|||+|+++|.|+++|+|+....+|.|.++ +.+|.... ....|++||||+++++|+++++++++
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 653 237999999999999999999999998899999998 66664432 35679999999999999999999999
Q ss_pred HhCCCceeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHH
Q 011190 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (491)
Q Consensus 314 ~l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
++++...
T Consensus 356 ~l~~~~~------------------------------------------------------------------------- 362 (450)
T PTZ00013 356 NLNVIKV------------------------------------------------------------------------- 362 (450)
T ss_pred HhCCeec-------------------------------------------------------------------------
Confidence 9876510
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeec
Q 011190 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISG 473 (491)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~ 473 (491)
...+.|.++|+. ..+|+|+|+|+|.+++|+|++|+..........|+++
T Consensus 363 ------------------------------~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~ 411 (450)
T PTZ00013 363 ------------------------------PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMIT 411 (450)
T ss_pred ------------------------------CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEE
Confidence 124568889986 5799999999999999999999986443334679999
Q ss_pred eeeccCCCCCCCeeE
Q 011190 474 FTAMDVPPPRGPLWY 488 (491)
Q Consensus 474 ~~~~~~~~~~~~~~~ 488 (491)
|.+.+.. ++.||
T Consensus 412 i~~~~~~---~~~~I 423 (450)
T PTZ00013 412 MLPVDID---DNTFI 423 (450)
T ss_pred EEECCCC---CCCEE
Confidence 9887642 24676
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4.2e-47 Score=382.39 Aligned_cols=291 Identities=38% Similarity=0.732 Sum_probs=256.2
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEEEE
Q 011190 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKV 168 (491)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~i 168 (491)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++++|+|++..++.+.+.|++|+++|.++.|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973336788899999999999999999999999999999999999999
Q ss_pred CcEeecccEEEEEEecCCcccccccccccccCccccccCCC-CcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEEC
Q 011190 169 GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGN-AVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFG 247 (491)
Q Consensus 169 g~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (491)
|+..+.++.||++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|.+.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999865544566778999999988776554 788999999999999999999999874 347999999
Q ss_pred ccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccch
Q 011190 248 GVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKA 327 (491)
Q Consensus 248 giD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~ 327 (491)
|+|+++|.|+++|+|+...++|.+.+++|.+++... .......++||||++++.+|.+++++|++++++...
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------- 230 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------- 230 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE-------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc-------
Confidence 999999999999999999999999999999999932 234557899999999999999999999999988721
Q ss_pred hhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhchh
Q 011190 328 VVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQT 407 (491)
Q Consensus 328 ~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (491)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCCCCCCCee
Q 011190 408 QENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLW 487 (491)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 487 (491)
.+.|.++|+....+|.|+|+|++.+|+|+|++|+.+..+.....|+++|..+|. ...++.|
T Consensus 231 ------------------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 231 ------------------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp ------------------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred ------------------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 267999999988899999999999999999999999887655689999999876 3344566
Q ss_pred E
Q 011190 488 Y 488 (491)
Q Consensus 488 ~ 488 (491)
|
T Consensus 292 i 292 (317)
T PF00026_consen 292 I 292 (317)
T ss_dssp E
T ss_pred E
Confidence 5
No 13
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-45 Score=376.56 Aligned_cols=295 Identities=45% Similarity=0.806 Sum_probs=245.3
Q ss_pred eeeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccC-CCC-CCCCCCCcceecCce---------
Q 011190 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYF-HSK-YKSSQSSTYKKNGES--------- 147 (491)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~-~~~-f~p~~SsT~~~~~~~--------- 147 (491)
..++..+.+++|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+...|.
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccccc
Confidence 456667778899999999999999999999999999999999962 6865 445 999999999987643
Q ss_pred ---------EEEEecCce-EEEEEEEEEEEECc---EeecccEEEEEEecCCccccc-ccccccccCccccccCCCCcch
Q 011190 148 ---------ASIQYGTGA-IAGFFSYDSVKVGD---LVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEISVGNAVPV 213 (491)
Q Consensus 148 ---------~~~~Yg~gs-~~G~~~~D~v~ig~---~~i~~~~fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~~~ 213 (491)
|.+.|++|+ ++|.+++|+|++++ ..++++.|||+....+. +.. ..++||||||+...+...+.+.
T Consensus 114 ~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~ 192 (398)
T KOG1339|consen 114 SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPS 192 (398)
T ss_pred CcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeeccc
Confidence 999999955 89999999999998 78888999999988765 444 6789999999999885544333
Q ss_pred HHHHHHcCCCCCCeEEEEeCCCCCC-CCCeeEEECccCCCCCccceeEEeecccc--eeEEEEeeEEECCee----ceee
Q 011190 214 WYNMVKQGLIQDPVFSFWLNRNQQE-DEGGEIVFGGVDPNHYKGKHTYVPVTQKG--YWQFNMGDVLIGGKP----TGYC 286 (491)
Q Consensus 214 ~~~L~~~g~i~~~~FSl~l~~~~~~-~~~G~L~fGgiD~~~~~G~l~~~pv~~~~--~w~v~l~~i~vgg~~----~~~~ 286 (491)
+.++ .++||+||.+.... ..+|.|+||++|+.++.+++.|+|+.... +|.|.+.+|.|+++. ..++
T Consensus 193 ~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~ 265 (398)
T KOG1339|consen 193 FYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFC 265 (398)
T ss_pred ccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEe
Confidence 3222 23899999987433 24899999999999999999999998877 999999999999842 3234
Q ss_pred cCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccc
Q 011190 287 AGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSM 366 (491)
Q Consensus 287 ~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~ 366 (491)
.+...+|+||||+++++|.++|++|.+++++.-
T Consensus 266 ~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~----------------------------------------------- 298 (398)
T KOG1339|consen 266 TDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV----------------------------------------------- 298 (398)
T ss_pred cCCCCEEEECCcceeeccHHHHHHHHHHHHhhe-----------------------------------------------
Confidence 446889999999999999999999999998760
Q ss_pred cccccccccCccccCccCcccchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCC----CCcE
Q 011190 367 GIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSS----MPIV 442 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~----~p~i 442 (491)
+.....+.|.++|..... +|.|
T Consensus 299 ------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i 324 (398)
T KOG1339|consen 299 ------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDI 324 (398)
T ss_pred ------------------------------------------------------eccccCCceeeecccCCCCcccCCcE
Confidence 001346778899998887 9999
Q ss_pred EEEEC-CEEEeeCcCccEEEeCCCCcceeeeceeeccCCCCCCCeeEE
Q 011190 443 SFTIG-GKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYS 489 (491)
Q Consensus 443 ~f~~~-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 489 (491)
+|+|+ |+.|.|++++|+++++++... |.+.+..++.+ +.||-
T Consensus 325 ~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~il 367 (398)
T KOG1339|consen 325 TFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWIL 367 (398)
T ss_pred EEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEE
Confidence 99999 899999999999998865333 99999998865 67873
No 14
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.8e-42 Score=343.19 Aligned_cols=220 Identities=34% Similarity=0.530 Sum_probs=193.2
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCccee-cCceEEEEecCce-EEEEEEEEEEE
Q 011190 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK-NGESASIQYGTGA-IAGFFSYDSVK 167 (491)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~-~~~~~~~~Yg~gs-~~G~~~~D~v~ 167 (491)
|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 34556677899999999987 4789999999997 89999999999
Q ss_pred ECcEeecccEEEEEEecCCcccccccccccccCccccccCC---CCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeE
Q 011190 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVG---NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEI 244 (491)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L 244 (491)
+|+..++++.||+++......+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887553455567899999999876542 35678999999865 89999999863 27999
Q ss_pred EECccCCCCCccceeEEeecc-cceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCC
Q 011190 245 VFGGVDPNHYKGKHTYVPVTQ-KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317 (491)
Q Consensus 245 ~fGgiD~~~~~G~l~~~pv~~-~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a 317 (491)
+|||+|+++|.|+++|+|+.+ .++|.|++++|.|+++... ...+..++|||||+++++|.+++++|++++++
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g 226 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPG 226 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcC
Confidence 999999999999999999976 7899999999999998432 34678899999999999999999999999943
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.7e-42 Score=352.94 Aligned_cols=223 Identities=31% Similarity=0.502 Sum_probs=184.8
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEEE
Q 011190 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK 167 (491)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ 167 (491)
..|+++|.||||+|++.|+|||||+++||++..|. ..++.|+|++|+||+..++.+.+.|++|+++|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 46999999999999999999999999999998773 3467899999999999999999999999999999999999
Q ss_pred ECcEeecccE----EEEEEecCCcccccccccccccCccccccC--CCCcchHHHHHHcCCCCCCeEEEEeCCCC-----
Q 011190 168 VGDLVVKDQE----FIEATREPGVTFMVAKFDGILGLGFQEISV--GNAVPVWYNMVKQGLIQDPVFSFWLNRNQ----- 236 (491)
Q Consensus 168 ig~~~i~~~~----fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~~~~L~~~g~i~~~~FSl~l~~~~----- 236 (491)
||+. .++. |+++............++||||||++.++. ....+++++|++|+.+ .++||+||....
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344443332211223579999999988764 2457899999999997 579999985321
Q ss_pred --CCCCCeeEEECccCCCCCccceeEEeecccceeEEEEeeEEECCeeceeecC---CceEEEcCCCCcccccHHHHHHH
Q 011190 237 --QEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAG---GCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 237 --~~~~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~---~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
.....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+..... ...+||||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988754321 24699999999999999999999
Q ss_pred HHHhCCC
Q 011190 312 NHAIGAS 318 (491)
Q Consensus 312 ~~~l~a~ 318 (491)
.+++++.
T Consensus 234 ~~~l~~~ 240 (364)
T cd05473 234 VDAIKAA 240 (364)
T ss_pred HHHHHhh
Confidence 9999776
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=352.47 Aligned_cols=216 Identities=27% Similarity=0.441 Sum_probs=175.8
Q ss_pred CCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcccc--CCCCCCCCCCCcceecC------------------
Q 011190 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACY--FHSKYKSSQSSTYKKNG------------------ 145 (491)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~--~~~~f~p~~SsT~~~~~------------------ 145 (491)
.+++|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999997 676 45799999999998642
Q ss_pred --ceEEEEecCce-EEEEEEEEEEEECc-----EeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHH
Q 011190 146 --ESASIQYGTGA-IAGFFSYDSVKVGD-----LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNM 217 (491)
Q Consensus 146 --~~~~~~Yg~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L 217 (491)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+ .|. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999987 4688999999987654 232 257999999998766 56666
Q ss_pred HHcCCCCCCeEEEEeCCCCC-CCCCeeEEECccCCCCCcc-ceeEEeecc---cceeEEEEeeEEECCeeceeec-----
Q 011190 218 VKQGLIQDPVFSFWLNRNQQ-EDEGGEIVFGGVDPNHYKG-KHTYVPVTQ---KGYWQFNMGDVLIGGKPTGYCA----- 287 (491)
Q Consensus 218 ~~~g~i~~~~FSl~l~~~~~-~~~~G~L~fGgiD~~~~~G-~l~~~pv~~---~~~w~v~l~~i~vgg~~~~~~~----- 287 (491)
... +. ++||+||.+..+ ....|.|+||+. +++.| .+.|+|+.. ..+|.|.+++|+||++.+....
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 43 599999975322 224799999984 55554 488999864 4699999999999998875432
Q ss_pred -CCceEEEcCCCCcccccHHHHHHHHHHhCC
Q 011190 288 -GGCSAIADSGTSLLAGPTTVITMINHAIGA 317 (491)
Q Consensus 288 -~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a 317 (491)
+...+||||||+++++|+++|++|.+++..
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~ 335 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEE 335 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHH
Confidence 124799999999999999999998887643
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.4e-40 Score=332.19 Aligned_cols=249 Identities=31% Similarity=0.557 Sum_probs=215.1
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCc-eEEEEEEEEEEE
Q 011190 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG-AIAGFFSYDSVK 167 (491)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~g-s~~G~~~~D~v~ 167 (491)
.|+++|+||||+|++.|++||||+++||+ .|.+.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 678899995 589999999999
Q ss_pred ECcEeecccEEEEEEecCCcccccccccccccCccccccC-----CCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCe
Q 011190 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV-----GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGG 242 (491)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G 242 (491)
+|+..++++.||++.... ..+||||||+...+. ...++++++|++||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999988743 24567999999999999999999998753 2379
Q ss_pred eEEECccCCCCCccceeEEeeccc------ceeEEEEeeEEECCeece--eecCCceEEEcCCCCcccccHHHHHHHHHH
Q 011190 243 EIVFGGVDPNHYKGKHTYVPVTQK------GYWQFNMGDVLIGGKPTG--YCAGGCSAIADSGTSLLAGPTTVITMINHA 314 (491)
Q Consensus 243 ~L~fGgiD~~~~~G~l~~~pv~~~------~~w~v~l~~i~vgg~~~~--~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~ 314 (491)
.|+|||+|+++|.|++.|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|+++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hCCCceeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHH
Q 011190 315 IGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMA 394 (491)
Q Consensus 315 l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 97761
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCC--CCcceeee
Q 011190 395 VVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGE--GPEAQCIS 472 (491)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~--~~~~~C~~ 472 (491)
....+.|.++|+.... |.|+|+|+|++|+|++++|+++... .....|++
T Consensus 209 ----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 209 ----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred ----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 0114568899998777 9999999999999999999998653 33578999
Q ss_pred ceeeccC
Q 011190 473 GFTAMDV 479 (491)
Q Consensus 473 ~~~~~~~ 479 (491)
+|++.+.
T Consensus 260 ~i~~~~~ 266 (295)
T cd05474 260 GIQPSTS 266 (295)
T ss_pred EEEeCCC
Confidence 9998763
No 18
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.3e-40 Score=335.46 Aligned_cols=215 Identities=29% Similarity=0.447 Sum_probs=180.3
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcccc--CCCCCCCCCCCcceec----------------CceEE
Q 011190 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACY--FHSKYKSSQSSTYKKN----------------GESAS 149 (491)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~--~~~~f~p~~SsT~~~~----------------~~~~~ 149 (491)
+.|+++|+||||+|++.|+|||||+++||+|.+|. .|. .++.|+|++|+|++.. .+.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 57999999999999999999999999999999997 454 4578999999999863 57899
Q ss_pred EEecCce-EEEEEEEEEEEECcEeec-------ccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcC
Q 011190 150 IQYGTGA-IAGFFSYDSVKVGDLVVK-------DQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQG 221 (491)
Q Consensus 150 ~~Yg~gs-~~G~~~~D~v~ig~~~i~-------~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g 221 (491)
+.|++|+ +.|.+++|+|+||+..+. ++.||++....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 789999999999987653 467999887654 34455679999999986542 223455577887
Q ss_pred CCCC--CeEEEEeCCCCCCCCCeeEEECccCCCCCc----------cceeEEeecccceeEEEEeeEEECCee-ceeecC
Q 011190 222 LIQD--PVFSFWLNRNQQEDEGGEIVFGGVDPNHYK----------GKHTYVPVTQKGYWQFNMGDVLIGGKP-TGYCAG 288 (491)
Q Consensus 222 ~i~~--~~FSl~l~~~~~~~~~G~L~fGgiD~~~~~----------G~l~~~pv~~~~~w~v~l~~i~vgg~~-~~~~~~ 288 (491)
.+.. ++||+||.+. .|.|+|||+|++++. +++.|+|+....+|.|.+++|.|+++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7765 9999999864 699999999999987 889999998889999999999999886 112345
Q ss_pred CceEEEcCCCCcccccHHHHHHHHH
Q 011190 289 GCSAIADSGTSLLAGPTTVITMINH 313 (491)
Q Consensus 289 ~~~aiiDTGTt~i~lP~~~~~~l~~ 313 (491)
...++|||||+++++|++++++|.+
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~ 255 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINN 255 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHh
Confidence 6789999999999999999988863
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.7e-40 Score=327.72 Aligned_cols=191 Identities=27% Similarity=0.473 Sum_probs=161.6
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCce-EEEEEEEEEEE
Q 011190 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (491)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 167 (491)
+|+++|.||||||++.|++||||+++||+|.+| +.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 68999999998 58999999999
Q ss_pred ECcE-eecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEE
Q 011190 168 VGDL-VVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVF 246 (491)
Q Consensus 168 ig~~-~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~f 246 (491)
||+. .++++.||++...++. + ...+||||||+...+ +..++..+ .+++||+||.+.. ....|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987665 44555544 3689999998743 123799999
Q ss_pred CccCCCCCccceeEEeeccc----ceeEEEEeeEEECCeeceee---cCCceEEEcCCCCcccccHHHHHHHHHHhCCC
Q 011190 247 GGVDPNHYKGKHTYVPVTQK----GYWQFNMGDVLIGGKPTGYC---AGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (491)
Q Consensus 247 GgiD~~~~~G~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~---~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~ 318 (491)
||+|++ .|++.|+|+.+. .+|.|++++|+||++.+... .....++|||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~ 200 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAA 200 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHH
Confidence 999999 999999999753 69999999999999987542 23567999999999999999999999998654
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.1e-38 Score=313.58 Aligned_cols=227 Identities=51% Similarity=0.901 Sum_probs=199.8
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCC--CCCCCCCcceecCceEEEEecCceEEEEEEEEEEE
Q 011190 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSK--YKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK 167 (491)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~--f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ 167 (491)
|+++|.||||+|++.|++||||+++||+|..|. ...|..+.. |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 223333333 89999999999999999999999999999999999
Q ss_pred ECcEeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEEC
Q 011190 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFG 247 (491)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (491)
+++..++++.||++..... .+....++||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998754 344557899999999987666678899999999999999999999985322348999999
Q ss_pred ccCCCCCccceeEEeecc--cceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCC
Q 011190 248 GVDPNHYKGKHTYVPVTQ--KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (491)
Q Consensus 248 giD~~~~~G~l~~~pv~~--~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~ 318 (491)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|++++++.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974222346789999999999999999999999999877
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.9e-36 Score=297.92 Aligned_cols=184 Identities=29% Similarity=0.443 Sum_probs=154.1
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCC-CCCCCccccCCCCCCCCCCCcceecCceEEEEecCc-eEEEEEEEEE
Q 011190 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPST-NCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG-AIAGFFSYDS 165 (491)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~-~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~g-s~~G~~~~D~ 165 (491)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|+++ +++|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 47999999999999999999999999999984 564 45 46899999965 4899999999
Q ss_pred EEECc----EeecccEEEEEEecCCcc-cccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCC
Q 011190 166 VKVGD----LVVKDQEFIEATREPGVT-FMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (491)
Q Consensus 166 v~ig~----~~i~~~~fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~ 240 (491)
|+++. ..++++.|||+....+.. +.....+||||||+...+ ++.+|.++++| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99953 577899999997654321 233467999999997654 78999999999 89999999863 2
Q ss_pred CeeEEECccCCCCCccceeEEeeccc---ceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHH
Q 011190 241 GGEIVFGGVDPNHYKGKHTYVPVTQK---GYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (491)
Q Consensus 241 ~G~L~fGgiD~~~~~G~l~~~pv~~~---~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~ 306 (491)
+|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+||++... .....++|||||+++++|++
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCc
Confidence 6899998 56678899999999764 799999999999998643 45678999999999999854
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.3e-36 Score=294.31 Aligned_cols=177 Identities=30% Similarity=0.492 Sum_probs=152.1
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCce-EEEEEEEEEEE
Q 011190 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (491)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 167 (491)
+|+++|+||||+|++.|+|||||+++||+| |.+.+.|++|+ ++|.+++|+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 46788999775 89999999999
Q ss_pred ECcE--eecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEE
Q 011190 168 VGDL--VVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIV 245 (491)
Q Consensus 168 ig~~--~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~ 245 (491)
+++. .++++.||++..... +....++||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998754 445678999999987654 677887776 89999998753233489999
Q ss_pred ECccCCCCCccceeEEeecc----cceeEEEEeeEEECCeecee--------ecCCceEEEcCCCCcccccH
Q 011190 246 FGGVDPNHYKGKHTYVPVTQ----KGYWQFNMGDVLIGGKPTGY--------CAGGCSAIADSGTSLLAGPT 305 (491)
Q Consensus 246 fGgiD~~~~~G~l~~~pv~~----~~~w~v~l~~i~vgg~~~~~--------~~~~~~aiiDTGTt~i~lP~ 305 (491)
|||+|++ +.|++.|+|+.. ..+|.+++++|+|+++.+.+ ......++|||||+++++|+
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~ 192 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCc
Confidence 9999999 999999999975 57999999999999987642 24567899999999999884
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.3e-34 Score=291.86 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=163.5
Q ss_pred EcCCCce-EEEEEeCCCCceeeeCCCCC---------CCccccCCCCCCCCC------CCcceecCceEEEE-ecCce-E
Q 011190 96 IGTPPQK-FTVIFDTGSSNLWVPSTNCY---------FSVACYFHSKYKSSQ------SSTYKKNGESASIQ-YGTGA-I 157 (491)
Q Consensus 96 iGtP~Q~-~~v~lDTGSs~lWV~~~~C~---------~~~~C~~~~~f~p~~------SsT~~~~~~~~~~~-Yg~gs-~ 157 (491)
+|||-.+ +.|++||||+++||+|.+|. .+..|..+..|++.+ ++......|.+... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5788777 99999999999999776432 145676666666542 12222334667554 77885 6
Q ss_pred EEEEEEEEEEECc--------EeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEE
Q 011190 158 AGFFSYDSVKVGD--------LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFS 229 (491)
Q Consensus 158 ~G~~~~D~v~ig~--------~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS 229 (491)
.|.+++|+++|+. ..++++.|||+.......+ ...++||||||+..++ +..+|..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 8999999999973 3688999999987532122 2347999999999887 5556766655 578999
Q ss_pred EEeCCCCCCCCCeeEEECccCCCCCc------cceeEEeeccc----ceeEEEEeeEEECCeeceee--------cCCce
Q 011190 230 FWLNRNQQEDEGGEIVFGGVDPNHYK------GKHTYVPVTQK----GYWQFNMGDVLIGGKPTGYC--------AGGCS 291 (491)
Q Consensus 230 l~l~~~~~~~~~G~L~fGgiD~~~~~------G~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~--------~~~~~ 291 (491)
+||.+.. ...|.|+||+.++.++. +++.|+|+..+ .+|.|++++|+||++.+.+. .+...
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g 231 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGG 231 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCc
Confidence 9998753 23799999999988774 78999999753 79999999999999977542 23457
Q ss_pred EEEcCCCCcccccHHHHHHHHHHhCCC
Q 011190 292 AIADSGTSLLAGPTTVITMINHAIGAS 318 (491)
Q Consensus 292 aiiDTGTt~i~lP~~~~~~l~~~l~a~ 318 (491)
++|||||++++||.++|++|.+++.+.
T Consensus 232 ~iiDSGTs~t~lp~~~y~~l~~a~~~~ 258 (362)
T cd05489 232 VKLSTVVPYTVLRSDIYRAFTQAFAKA 258 (362)
T ss_pred EEEecCCceEEECHHHHHHHHHHHHHH
Confidence 999999999999999999999998654
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=3.8e-22 Score=169.28 Aligned_cols=108 Identities=61% Similarity=0.958 Sum_probs=95.7
Q ss_pred EEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCC-CCCCCCcceecCceEEEEecCceEEEEEEEEEEEECc
Q 011190 92 GEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKY-KSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGD 170 (491)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f-~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ig~ 170 (491)
++|.||||||++.|+|||||+++||++..|. ...|..++.| +|+.|++++...+.+.+.|++|++.|.++.|+|+||+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 3344455666 9999999999999999999999999999999999999
Q ss_pred EeecccEEEEEEecCCcccccccccccccC
Q 011190 171 LVVKDQEFIEATREPGVTFMVAKFDGILGL 200 (491)
Q Consensus 171 ~~i~~~~fg~~~~~~~~~~~~~~~~GIlGL 200 (491)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886644445678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.85 E-value=1.6e-20 Score=171.21 Aligned_cols=136 Identities=35% Similarity=0.572 Sum_probs=106.4
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceec----------------------Cce
Q 011190 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKN----------------------GES 147 (491)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~----------------------~~~ 147 (491)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999976 3578899999998762 258
Q ss_pred EEEEecCce-EEEEEEEEEEEECc-----EeecccEEEEEEecCCcccccccccccccCccccccCCCCcchHHHHHHcC
Q 011190 148 ASIQYGTGA-IAGFFSYDSVKVGD-----LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQG 221 (491)
Q Consensus 148 ~~~~Yg~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g 221 (491)
|.+.|++++ ..|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||..+
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 68999999999976 46788999999987643 2277999999998877 88899888
Q ss_pred CCCCCeEEEEeCCCCCCCCCeeEEECc
Q 011190 222 LIQDPVFSFWLNRNQQEDEGGEIVFGG 248 (491)
Q Consensus 222 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 248 (491)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57899999998 2233489999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.04 E-value=8.9e-10 Score=100.16 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=41.6
Q ss_pred eeEEEEeeEEECCeeceeecC-------CceEEEcCCCCcccccHHHHHHHHHHhCCC
Q 011190 268 YWQFNMGDVLIGGKPTGYCAG-------GCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (491)
Q Consensus 268 ~w~v~l~~i~vgg~~~~~~~~-------~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~ 318 (491)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|++|.+++.+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~ 58 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ 58 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH
Confidence 588999999999999876543 467999999999999999999999998554
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.33 E-value=4.9e-07 Score=61.54 Aligned_cols=39 Identities=26% Similarity=0.645 Sum_probs=36.8
Q ss_pred cccchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCC
Q 011190 385 NAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMP 423 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (491)
+..|.+|++++.++++.+.+|.|+++|.+.++++|+++|
T Consensus 1 ~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 1 GDECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 357999999999999999999999999999999999887
No 28
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.06 E-value=1.1e-05 Score=65.92 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=66.0
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceE-EEEEEEEEEE
Q 011190 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI-AGFFSYDSVK 167 (491)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~-~G~~~~D~v~ 167 (491)
.|++++.|+ ++++++++|||++.+|+...... .+. . + ........+..++|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 69999999999999999764221 111 0 0 1123345667777773 4555689999
Q ss_pred ECcEeecccEEEEEEecCCcccccccccccccCcc
Q 011190 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (491)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (491)
+|+..++++.+.++..... ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999999888765431 4699999863
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.37 E-value=0.0021 Score=55.37 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=68.2
Q ss_pred eeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEE-
Q 011190 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA- 158 (491)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~- 158 (491)
+++....++.|++++.|. ++++.+++|||++.+-++...-. .-..++.. ......+.-+.|...
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 456666789999999997 68999999999999988543210 00111111 122344444566643
Q ss_pred EEEEEEEEEECcEeecccEEEEEEecCCcccccccccccccCcc
Q 011190 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (491)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (491)
..+.-|.+.+|+..++|..+.++..... .+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~~-------~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGAL-------SESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCcC-------CceEcCHHH
Confidence 5568899999999999999877743211 279999964
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.55 E-value=0.013 Score=46.94 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=54.1
Q ss_pred EEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceE-EEEEEEEEEEECc
Q 011190 92 GEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI-AGFFSYDSVKVGD 170 (491)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~-~G~~~~D~v~ig~ 170 (491)
+++.|+ ++++++++|||++.+.+...-+. .. ...+.. ......+.-.+|.. ......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~------~l-~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK------KL-GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH------Hc-CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 367777 58999999999998888543321 00 011110 01123333344443 3455666899999
Q ss_pred EeecccEEEEEEecCCcccccccccccccCc
Q 011190 171 LVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (491)
Q Consensus 171 ~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (491)
..+.+..+.+... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9988888777661 23458999973
No 31
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=95.60 E-value=0.0019 Score=42.55 Aligned_cols=34 Identities=44% Similarity=1.022 Sum_probs=32.3
Q ss_pred cccchhhhccchhhhhhhhhccCcccccccCccc
Q 011190 323 QQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (491)
Q Consensus 323 ~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C 356 (491)
..|+.++.+|++.++++...+.+|..+|..+|+|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 3699999999999999999999999999999998
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.39 E-value=0.17 Score=51.07 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=102.0
Q ss_pred EEEEEEEcCCC----ceEE-EEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceE--EEEecCceEEEEEE
Q 011190 90 YYGEIGIGTPP----QKFT-VIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESA--SIQYGTGAIAGFFS 162 (491)
Q Consensus 90 Y~~~i~iGtP~----Q~~~-v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~--~~~Yg~gs~~G~~~ 162 (491)
-++.|+|=-|+ |++. |++||||.-|=|..+.-.. .-.+......+ .+.+. ...|++|..=|-+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr 94 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTG-----GGAPLAECAQFASGYTWGSVR 94 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccC-----CCcchhhhhhccCcccccceE
Confidence 35556664443 4554 9999999987775543210 00001111111 11121 24577777668999
Q ss_pred EEEEEECcEeecccEEEEEEecC-----------C---cccccccccccccCccccccC----------------CCC--
Q 011190 163 YDSVKVGDLVVKDQEFIEATREP-----------G---VTFMVAKFDGILGLGFQEISV----------------GNA-- 210 (491)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~~~~~~-----------~---~~~~~~~~~GIlGLg~~~~s~----------------~~~-- 210 (491)
+..|+||+....++.+.+..+.. + ..-....++||||+|.-.... ...
T Consensus 95 ~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~s 174 (370)
T PF11925_consen 95 TADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGS 174 (370)
T ss_pred EEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCC
Confidence 99999999877777776664421 0 011134679999998653321 000
Q ss_pred -cchHHHHHHcCCCCCCeEEEE---------eCCCC---CCCCCeeEEECccCCC--CCccceeEEeecccceeEEEEee
Q 011190 211 -VPVWYNMVKQGLIQDPVFSFW---------LNRNQ---QEDEGGEIVFGGVDPN--HYKGKHTYVPVTQKGYWQFNMGD 275 (491)
Q Consensus 211 -~~~~~~L~~~g~i~~~~FSl~---------l~~~~---~~~~~G~L~fGgiD~~--~~~G~l~~~pv~~~~~w~v~l~~ 275 (491)
...-..+-+| +..|+..|- |..-+ .....|.|+||=-..+ ...+.....+....++....
T Consensus 175 Ct~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt~--- 249 (370)
T PF11925_consen 175 CTSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTTT--- 249 (370)
T ss_pred eecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEEE---
Confidence 0111112222 455665443 22211 2335799999822111 12222445555555553322
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~ 306 (491)
.+|... ....||||+.-.++|..
T Consensus 250 --~~G~t~------~~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 250 --FNGQTY------SASFFDSGSNGYFFPDS 272 (370)
T ss_pred --ecCcee------eeeeEecCCceeeccCC
Confidence 234332 12399999999988854
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.17 E-value=0.18 Score=43.55 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=57.5
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEE-EEecCce--EEEEEEE
Q 011190 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESAS-IQYGTGA--IAGFFSY 163 (491)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~-~~Yg~gs--~~G~~~~ 163 (491)
...+++++.|+ ++++.+++|||++..++...-+. .+.- .... ...+. ...+.|. ..|....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~-------~~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGL----MRLI-------DKRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCC----cccc-------CcceEEEEecCCCcEEEeEEEE
Confidence 45789999998 68999999999999998653321 1110 0000 11121 2233232 4577778
Q ss_pred EEEEECcEeecccEEEEEEecCCcccccccccccccCc
Q 011190 164 DSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (491)
Q Consensus 164 D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (491)
+.+.+++...+ ..|.+.... ..|+|||+-
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~~--------~~d~ILG~d 106 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLEDD--------DVDFLIGLD 106 (124)
T ss_pred EEEEECCEEee-eEEEEECCC--------CcCEEecHH
Confidence 89999998865 666655322 358999995
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.89 E-value=0.26 Score=45.70 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=74.8
Q ss_pred CcceeeeeecCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCc
Q 011190 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (491)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~g 155 (491)
+...+.|....++.|.++..|- +|++..++|||-+.+.++...-. .-.|+.+. .+.++.+.-++|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 4557888888899999999998 79999999999999888654321 12344432 245666667788
Q ss_pred eEE-EEEEEEEEEECcEeecccEEEEEEecCCcccccccccccccCcc
Q 011190 156 AIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (491)
Q Consensus 156 s~~-G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (491)
... -.+-.|.|.||+..+.|+.--++..... ..-+|||.+
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~L-------~~sLLGMSf 197 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVAEDGAL-------DESLLGMSF 197 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhheecCCcc-------chhhhhHHH
Confidence 864 5688899999999998887555533211 135677764
No 35
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=94.62 E-value=0.043 Score=42.24 Aligned_cols=46 Identities=28% Similarity=0.671 Sum_probs=39.9
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcC
Q 011190 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGK 435 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~ 435 (491)
.|.+|++++..+++.+.++.+++++.+.+.++|+++|. .+.-.|..
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~---~~~~~C~~ 47 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPK---SLSDQCKE 47 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCH---HHHHHHHH
Confidence 69999999999999999999999999999999999983 33336653
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.27 E-value=0.23 Score=40.17 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=47.8
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCce---EEEEEEEEEE
Q 011190 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA---IAGFFSYDSV 166 (491)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs---~~G~~~~D~v 166 (491)
|++++.|+ ++++.+++||||+..++....+. .....+ .......+.-.+|. +.|.. .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~-------~lg~~~-------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR-------KLGSPP-------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH-------HhCCCc-------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57888998 69999999999999999665432 000011 11223334434444 35766 8899
Q ss_pred EECcEeecccEEEEEEe
Q 011190 167 KVGDLVVKDQEFIEATR 183 (491)
Q Consensus 167 ~ig~~~i~~~~fg~~~~ 183 (491)
++++... ...|-+...
T Consensus 64 ~~~~~~~-~~~~~v~~~ 79 (91)
T cd05484 64 KYGGKTK-VLTLYVVKN 79 (91)
T ss_pred EECCEEE-EEEEEEEEC
Confidence 9999874 355555543
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.82 E-value=0.66 Score=37.12 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=47.5
Q ss_pred EEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEE-EEE-EEEECc
Q 011190 93 EIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFF-SYD-SVKVGD 170 (491)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~-~~D-~v~ig~ 170 (491)
.+.|. ++++++++|||++.+-+....+. .. ....+...+.=..|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~---~~--------------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP---KQ--------------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh---hc--------------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45565 68999999999999999765442 00 01123333333344321111 123 699999
Q ss_pred EeecccEEEEEEecCCcccccccccccccCcc
Q 011190 171 LVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (491)
Q Consensus 171 ~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (491)
..+.+ .+.+.... .++|||+-+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 98885 45444321 278999854
No 38
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=91.88 E-value=0.29 Score=46.32 Aligned_cols=111 Identities=20% Similarity=0.369 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCceeecccchhhhccchhhhhhhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcc
Q 011190 307 VITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNA 386 (491)
Q Consensus 307 ~~~~l~~~l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
.++..=+.+.... .+.|..++.+|++.+|+.......|..+|..+++|.-... +..+ +.+ +.+. +.
T Consensus 63 ~l~~~Ckkl~~~~--~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~----~~~~--~~~----~~~~--~~ 128 (218)
T KOG1340|consen 63 DLHAECKKLPKAI--PFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG----PVSE--VFA----SQPA--AG 128 (218)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc----hhhh--hhh----hccc--cc
Confidence 3333445554441 2279999999999999999999999999999999984111 0000 001 1112 77
Q ss_pred cchhhHHHHHHHHHHhhh-chhHHHHHHHHHhhhccCCCCCCceeecCcC
Q 011190 387 MCSACEMAVVWMQNQLQQ-NQTQENILQYVNELCDRMPSPMGESAVDCGK 435 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~ 435 (491)
.|.+|.+.+.++...+.. +.++.++..-....|.-++ .|.=-|.+
T Consensus 129 ~C~~C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~----~~~~~Ck~ 174 (218)
T KOG1340|consen 129 ECELCRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLP----NYEQKCKQ 174 (218)
T ss_pred ccHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccCCc----cchhHHHH
Confidence 899999999999988888 7777888888778883333 33334664
No 39
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=87.67 E-value=0.57 Score=44.38 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=41.4
Q ss_pred CcccchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCc
Q 011190 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCG 434 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~ 434 (491)
+...|..|+++++.++..+++| .++|++.|...|+++|..... .|.
T Consensus 35 ~~~~C~lCe~~v~~i~~~~~~~--~~~i~~~l~~~Ckkl~~~~~~---~C~ 80 (218)
T KOG1340|consen 35 SAEVCELCELVVKRIQEYLDKN--QNELKEDLHAECKKLPKAIPF---ECL 80 (218)
T ss_pred ccchhHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhcccchH---HHH
Confidence 6789999999999999999999 999999999999999976653 565
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=87.53 E-value=0.41 Score=39.24 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=17.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhhc
Q 011190 1 MGTKIRAVPLSLFLSSLLFSLVASVS 26 (491)
Q Consensus 1 M~~~~~~~~~~l~~l~ll~~~~~a~~ 26 (491)
|+++..+||+++++++||.++..++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 89887777666666666655555544
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.96 E-value=1.2 Score=34.29 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=28.7
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCC
Q 011190 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (491)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C 121 (491)
.+.+++++.|| ++.+.+++|||++...|+...+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 57899999999 5999999999999999876543
No 42
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=80.54 E-value=1.3 Score=27.84 Aligned_cols=24 Identities=38% Similarity=0.266 Sum_probs=16.8
Q ss_pred eEEEeeeecCCChhhhhhhcchhh
Q 011190 30 LVRIGLKKMKLDPNNRLAARLESE 53 (491)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~ 53 (491)
++||||+|.++.++.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999999887765
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.38 E-value=3.7 Score=33.42 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.7
Q ss_pred EEEEEEcCCCceEEEEEeCCCCceeeeCCCC
Q 011190 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (491)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C 121 (491)
+.+|.+. ++++.+++||||+..-|+...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5677777 5899999999999999976543
No 44
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=74.65 E-value=6.8 Score=33.53 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.5
Q ss_pred ccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 265 QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 265 ~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
..+++.+. +.|||+.+ .++||||++.+.++.+..+.+
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 45566555 56788754 479999999999999988776
No 45
>PF13650 Asp_protease_2: Aspartyl protease
Probab=71.49 E-value=4.8 Score=31.60 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.5
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
+.|+|+.+ .+++|||++.+.++++.++.+
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 45676643 579999999999999888776
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=66.00 E-value=9.6 Score=29.25 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=24.2
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
+.|++..+ .+++|||++..+++.+..+.|
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 55677654 379999999999999999887
No 47
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=65.97 E-value=1.8 Score=32.83 Aligned_cols=36 Identities=50% Similarity=1.020 Sum_probs=33.1
Q ss_pred eecccchhhhccchhhhhhhhhccCcccccccCccc
Q 011190 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (491)
Q Consensus 321 ~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~~~~g~C 356 (491)
+...|..++..|++.+++.......|..+|..+|+|
T Consensus 41 ~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 41 LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 566799999999999999999988899999999998
No 48
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=62.73 E-value=9.3 Score=30.76 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.1
Q ss_pred EEEEcCCCceEEEEEeCCCCceeeeCCCC
Q 011190 93 EIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (491)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C 121 (491)
++.|+ +|.+.+++|||++++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 45666 7999999999999999976543
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=61.97 E-value=15 Score=31.73 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=44.3
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCce--EEEEEEEEE
Q 011190 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA--IAGFFSYDS 165 (491)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs--~~G~~~~D~ 165 (491)
...++++.|+ ++++++++|||...+-+..+-+. .|.-...-+. ..-...+|-|. +-|.+..-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~---r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAE---RCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHH---HTTGGGGEEG----------GG-EE-------EEEEEEEEEE
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHH---HcCChhhccc----------cccccccCCCcCceeEEEEEEE
Confidence 4689999999 69999999999998888543211 3332111110 11122344454 679999899
Q ss_pred EEECcEeecccEEEEEE
Q 011190 166 VKVGDLVVKDQEFIEAT 182 (491)
Q Consensus 166 v~ig~~~i~~~~fg~~~ 182 (491)
+.+|+..++ ..|-+..
T Consensus 88 l~ig~~~~~-~s~~Vle 103 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVLE 103 (124)
T ss_dssp EEETTEEEE-EEEEEET
T ss_pred EEECCEEEE-EEEEEeC
Confidence 999997665 5555554
No 50
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=61.49 E-value=10 Score=30.39 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=25.0
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMIN 312 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 312 (491)
+.|+|+.+. +.+|||++...++.+.+..+-
T Consensus 5 ~~Ing~~i~-------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 5 LLVNGKPLK-------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEECCEEEE-------EEEcCCcceEEeCHHHHHHhC
Confidence 567888664 699999999999999988763
No 51
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=58.78 E-value=15 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.0
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
+.+|++.+ .+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 55676544 579999999999999887765
No 52
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=54.06 E-value=14 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.0
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
+.|||..+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56677765 369999999999999999876
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=50.53 E-value=21 Score=32.29 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=22.6
Q ss_pred EEEEEEcCCCceEEEEEeCCCCceeeeCC
Q 011190 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPST 119 (491)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~lWV~~~ 119 (491)
...+.++.-+.++.++|||||+.-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44455555579999999999999888654
No 54
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=50.18 E-value=21 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHhhhccCCCCCCceeecCcCCCCCCcEEEEECCEEEeeCcCcc
Q 011190 405 NQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEY 458 (491)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~y 458 (491)
-+|.|+|.+.+++.|.+ ++. .|..++.--+++|.++|..+.+.-..+
T Consensus 14 yPs~e~i~~aIE~YC~~----~~~---~l~Fisr~~Pi~~~idg~lYev~i~~~ 60 (74)
T PF14201_consen 14 YPSKEEICEAIEKYCIK----NGE---SLEFISRDKPITFKIDGVLYEVEIDEE 60 (74)
T ss_pred CCCHHHHHHHHHHHHHH----cCC---ceEEEecCCcEEEEECCeEEEEEEEee
Confidence 34899999999999943 333 677677777799999999888866544
No 55
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=48.04 E-value=21 Score=30.59 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=23.2
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
+.++|..+ .+++|||++...++.+..+.+
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHc
Confidence 45666654 479999999999999988774
No 56
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=47.16 E-value=1.1e+02 Score=26.69 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.3
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeC
Q 011190 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPS 118 (491)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~lWV~~ 118 (491)
.-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 4567788885 899999999999999854
No 57
>PRK02710 plastocyanin; Provisional
Probab=38.76 E-value=38 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhhcCCceEEEee
Q 011190 1 MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGL 35 (491)
Q Consensus 1 M~~~~~~~~~~l~~l~ll~~~~~a~~~~~~~~ipl 35 (491)
|.+|++++++.++++++.+++.++.+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 67777777776666655545444444455555554
No 58
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=37.74 E-value=55 Score=30.71 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.8
Q ss_pred cceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHH
Q 011190 266 KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMIN 312 (491)
Q Consensus 266 ~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 312 (491)
.+++.++ ..|||+.+. .++|||.|.+.++.+..+.+-
T Consensus 103 ~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~RlG 139 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRLG 139 (215)
T ss_pred CCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHhC
Confidence 4455444 578888775 599999999999999888763
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=37.16 E-value=25 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.7
Q ss_pred ceEEEcCCCCccc-ccHHHHHHH
Q 011190 290 CSAIADSGTSLLA-GPTTVITMI 311 (491)
Q Consensus 290 ~~aiiDTGTt~i~-lP~~~~~~l 311 (491)
-.+++|||.+... +|.++++.+
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 4689999999886 999988875
No 60
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=36.91 E-value=2.3e+02 Score=22.97 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=36.5
Q ss_pred ceEEEEEeCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEEE--ECcEeecccEE
Q 011190 101 QKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK--VGDLVVKDQEF 178 (491)
Q Consensus 101 Q~~~v~lDTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~--ig~~~i~~~~f 178 (491)
.....++|||+...-+|...|.. . ....++.+.-+.|+.--.+++-.++ +|....-.-.|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~--------~----------~~~~~~~l~AANgt~I~tyG~~~l~ldlGlrr~~~w~F 69 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKK--------S----------LKPSPLTLQAANGTPIATYGTRSLTLDLGLRRPFAWNF 69 (89)
T ss_pred CCcEEEEeCCCceEeeccccccc--------c----------ccCCceEEEeCCCCeEeeeeeEEEEEEcCCCcEEeEEE
Confidence 35689999999999998776641 0 1123445555666654445444444 45432223455
Q ss_pred EEEE
Q 011190 179 IEAT 182 (491)
Q Consensus 179 g~~~ 182 (491)
-+++
T Consensus 70 vvAd 73 (89)
T cd06094 70 VVAD 73 (89)
T ss_pred EEcC
Confidence 5543
No 61
>PHA01810 hypothetical protein
Probab=36.15 E-value=41 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHh
Q 011190 392 EMAVVWMQNQLQQNQTQENILQYVNE 417 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (491)
..++.|+.+-+.|++.+|.|++++.+
T Consensus 53 ssvvqflndelnnetkpesilsyiag 78 (100)
T PHA01810 53 SSVVQFLNDELNNETKPESILSYIAG 78 (100)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 45788999999999999999999864
No 62
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=36.04 E-value=30 Score=27.88 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~ 308 (491)
|.++|..+ .++||||+..++++...+
T Consensus 10 v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EeECCEEE-------EEEEecCCCcceeccccc
Confidence 45666654 579999999999997644
No 63
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=34.01 E-value=54 Score=26.16 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCC
Q 011190 390 ACEMAVVWMQNQLQQNQTQENILQYVNELCDRMP 423 (491)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (491)
+-|..-.-|+..+.+.+|+|+|.++|.+.|..+.
T Consensus 46 ~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~l~~ 79 (85)
T PF12091_consen 46 WAEMFREDVQALIASEPTQEEVDDFLGGYDALMQ 79 (85)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4466777889999999999999999999986553
No 64
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.38 E-value=28 Score=29.82 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEEcCCCC-cccccHHHHHHHH
Q 011190 292 AIADSGTS-LLAGPTTVITMIN 312 (491)
Q Consensus 292 aiiDTGTt-~i~lP~~~~~~l~ 312 (491)
.++|||.+ ++.+|.++++++.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999998874
No 65
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=30.69 E-value=60 Score=28.01 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.5
Q ss_pred EEECCeeceeecCCceEEEcCCCCcccccHHHHHHH
Q 011190 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (491)
Q Consensus 276 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (491)
+.+||..+ .|++|||+..+.++...++++
T Consensus 29 ~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 56788765 489999999999999988874
No 66
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=30.31 E-value=96 Score=24.55 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.5
Q ss_pred cCccCcccchhh-------------HHHHHHHHHHhhhc-hhHHHHHHHHHhhhccCC
Q 011190 380 SGVLNNAMCSAC-------------EMAVVWMQNQLQQN-QTQENILQYVNELCDRMP 423 (491)
Q Consensus 380 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 423 (491)
.|..+..+|..| +|+-+.++-+-..+ .++|+..+.+.+...+++
T Consensus 21 dGs~s~~YC~yCy~~G~Ft~~~t~eemie~~~~~~~~~~~~~~~~a~~~~~~~lp~Lk 78 (81)
T PF12674_consen 21 DGSKSEDYCSYCYQNGEFTQDITMEEMIEFCVPFMDEFNGMTPEEARKMMPRYLPTLK 78 (81)
T ss_pred CCCCchhHHHHHhcCCceeecCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCc
Confidence 467888999999 56666666554444 699999999988775554
No 67
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.66 E-value=61 Score=26.94 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=39.8
Q ss_pred EEEEEcCCC----ceEEEEEeCCCCcee-eeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCce-EEEEEEEEE
Q 011190 92 GEIGIGTPP----QKFTVIFDTGSSNLW-VPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDS 165 (491)
Q Consensus 92 ~~i~iGtP~----Q~~~v~lDTGSs~lW-V~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~ 165 (491)
+++.|..|. -++.+++|||.+..- ++...-. .-...+.. .....-++|. +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 577888773 268899999999765 5432110 11112211 2234455665 456677899
Q ss_pred EEECcEee
Q 011190 166 VKVGDLVV 173 (491)
Q Consensus 166 v~ig~~~i 173 (491)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99999765
No 68
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=29.40 E-value=54 Score=26.52 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.0
Q ss_pred ceEEEcCCCCcccccHHHHHHHH
Q 011190 290 CSAIADSGTSLLAGPTTVITMIN 312 (491)
Q Consensus 290 ~~aiiDTGTt~i~lP~~~~~~l~ 312 (491)
..+.+|||++...+|...+..+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 35799999999999999888875
No 69
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=28.87 E-value=83 Score=24.93 Aligned_cols=43 Identities=19% Similarity=0.503 Sum_probs=28.4
Q ss_pred CcccchhhHHHHH--HHHHHhhhchhHHHHHHHHHhhhc---cCCCCCCceeecCcC
Q 011190 384 NNAMCSACEMAVV--WMQNQLQQNQTQENILQYVNELCD---RMPSPMGESAVDCGK 435 (491)
Q Consensus 384 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~C~~ 435 (491)
.--+|+-|-.+++ || -.|+|++|.+-.. .+|...|.|.+.|+.
T Consensus 9 ~I~YCtQCnWlLRa~Wm---------aQElL~TF~~dlgeV~L~PgTGG~FeI~~dg 56 (99)
T COG3526 9 EITYCTQCNWLLRAAWM---------AQELLSTFADDLGEVALIPGTGGVFEITCDG 56 (99)
T ss_pred EEEEechhhHHHHHHHH---------HHHHHHHHHhhhheEEEecCCCceEEEEECC
Confidence 3458999988776 55 3455665554222 458888888888873
No 70
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=25.21 E-value=83 Score=26.68 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=12.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhh
Q 011190 1 MGTKIRAVPLSLFLSSLLFSLVAS 24 (491)
Q Consensus 1 M~~~~~~~~~~l~~l~ll~~~~~a 24 (491)
|.||.++++.+++-++.|+.++.|
T Consensus 2 ~sr~~Ra~Ls~~ln~LAL~~S~tA 25 (118)
T PF07803_consen 2 MSRRQRALLSLILNLLALAFSTTA 25 (118)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 556666655544444444333434
No 71
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=20.27 E-value=2.4e+02 Score=21.95 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=32.8
Q ss_pred cccchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCceeecCcC---------CCCCCcEEEEECCEEEe
Q 011190 385 NAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGK---------LSSMPIVSFTIGGKVFD 452 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~---------~~~~p~i~f~~~g~~~~ 452 (491)
...|..|..+...+ .++-..++.....+.++|+. +..+|.+.|.-+|....
T Consensus 26 ~~~C~~C~~~~~~~-----------------~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 26 APWCPPCKAFKPIL-----------------EKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp STTSHHHHHHHHHH-----------------HHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred CCCCCcccccccee-----------------cccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE
Confidence 45799998655444 22222233345567788865 45799999988887654
No 72
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.10 E-value=1.3e+02 Score=28.88 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred ceeeeeecCCceEEEE---EEEcC-----CCceEEEEEeCCCCceeeeCCCC
Q 011190 78 DIVALKNYMDAQYYGE---IGIGT-----PPQKFTVIFDTGSSNLWVPSTNC 121 (491)
Q Consensus 78 ~~~~l~n~~~~~Y~~~---i~iGt-----P~Q~~~v~lDTGSs~lWV~~~~C 121 (491)
..+|+.......|.+. |.||. ......+++|||++.+++|...+
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 3455554334567664 57775 24678899999999999987543
Done!