BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011191
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/410 (49%), Positives = 280/410 (68%), Gaps = 3/410 (0%)
Query: 73 RDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITEN 131
RDVP ++++ LF++KL+ CC DF +D + ++ KE+KR L E+V++I ITE
Sbjct: 31 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 132 CQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSS 191
E++ M ++N+FR LPP+S+ TG E DPEED+P LE +WPHLQLVYE LR++ S
Sbjct: 91 IYPEVVHMFAVNMFRTLPPSSNP-TGAEF-DPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 192 DTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 251
D IAK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 252 YRFIYETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLS 311
YRFIYETE H NGFALP+KEEHK+FL++ LLPLHK K +++YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 312 YCITQFVEKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXXXXXXATQGAEFQRCMVPLF 371
YC+ QF+EKD L + V+ LLKYWP T+ K + +EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 372 RQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHG 431
RQ+A+C++S HFQVAERAL+ WNNE+I+SLI+ N ILPI+F +L +N ++HWN+ +HG
Sbjct: 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388
Query: 432 LTVNVRKMFLDMDAELFEECQNQYXXXXXXXXXXXXQRELTWKRLADVAE 481
L N K+F++M+ +LF++C Q+ +RE W ++ ++A+
Sbjct: 389 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAK 438
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/408 (49%), Positives = 278/408 (68%), Gaps = 3/408 (0%)
Query: 73 RDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITEN 131
RDVP ++++ LF++KL+ CC DF +D + ++ KE+KR L E+V++I ITE
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 132 CQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSS 191
E++ M ++N+FR LPP+S+ TG E DPEED+P LE +WPHLQLVYE LR++ S
Sbjct: 62 IYPEVVHMFAVNMFRTLPPSSNP-TGAEF-DPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119
Query: 192 DTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 251
D IAK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179
Query: 252 YRFIYETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLS 311
YRFIYETE H NGFALP+KEEHK+FL++ LLPLHK K +++YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239
Query: 312 YCITQFVEKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXXXXXXATQGAEFQRCMVPLF 371
YC+ QF+EKD L + V+ LLKYWP T+ K + +EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299
Query: 372 RQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHG 431
RQ+A+C++S HFQVAERAL+ WNNE+I+SLI+ N ILPI+F +L +N ++HWN+ +HG
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 359
Query: 432 LTVNVRKMFLDMDAELFEECQNQYXXXXXXXXXXXXQRELTWKRLADV 479
L N K+F++M+ +LF++C Q+ +RE W ++ ++
Sbjct: 360 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 407
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/405 (48%), Positives = 275/405 (67%), Gaps = 3/405 (0%)
Query: 76 PVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQE 134
P ++++ LF++KL+ CC DF +D + ++ KE+KR L E+V++I ITE
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 135 EMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTD 194
E++ M ++N+FR LPP+S+ TG E DPEED+P LE +WPHLQLVYE LR++ S D
Sbjct: 61 EVVHMFAVNMFRTLPPSSNP-TGAEF-DPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 118
Query: 195 TKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 254
IAK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRF
Sbjct: 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 178
Query: 255 IYETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCI 314
IYETE H NGFALP+KEEHK+FL++ LLPLHK K +++YH QL+YC+
Sbjct: 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238
Query: 315 TQFVEKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXXXXXXATQGAEFQRCMVPLFRQI 374
QF+EKD L + V+ LLKYWP T+ K + +EF + M PLFRQ+
Sbjct: 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQL 298
Query: 375 ARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTV 434
A+C++S HFQVAERAL+ WNNE+I+SLI+ N ILPI+F +L +N ++HWN+ +HGL
Sbjct: 299 AKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 358
Query: 435 NVRKMFLDMDAELFEECQNQYXXXXXXXXXXXXQRELTWKRLADV 479
N K+F++M+ +LF++C Q+ +RE W ++ ++
Sbjct: 359 NALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 403
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/377 (50%), Positives = 257/377 (68%), Gaps = 3/377 (0%)
Query: 80 RQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIK 138
++ LF++KL+ CC DF +D + ++ KE+KR L E V++I ITE E++
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 139 MISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIA 198
++N FR LPP+S+ TG E DPEED+P LE +WPHLQLVYE LR++ S D IA
Sbjct: 61 XFAVNXFRTLPPSSNP-TGAEF-DPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA 118
Query: 199 KRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYET 258
K+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRFIYET
Sbjct: 119 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 178
Query: 259 ERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFV 318
E H NGFALP+KEEHK+FL++ LLPLHK K +++YH QL+YC+ QF+
Sbjct: 179 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL 238
Query: 319 EKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXXXXXXATQGAEFQRCMVPLFRQIARCL 378
EKD L + V+ LLKYWP T+ K + +EF + PLFRQ+A+C+
Sbjct: 239 EKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCV 298
Query: 379 NSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRK 438
+S HFQVAERAL+ WNNE+I SLI+ N ILPI F +L +N ++HWN+ +HGL N K
Sbjct: 299 SSPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALK 358
Query: 439 MFLDMDAELFEECQNQY 455
+F + + +LF++C Q+
Sbjct: 359 LFXEXNQKLFDDCTQQF 375
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/352 (52%), Positives = 246/352 (69%), Gaps = 3/352 (0%)
Query: 73 RDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITEN 131
RDVP ++++ LF++KL+ CC DF +D + ++ KE+KR L E+V++I ITE
Sbjct: 43 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 102
Query: 132 CQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSS 191
E++ M ++N+FR LPP+S+ TG E DPEED+P LE +WPHLQLVYE LR++ S
Sbjct: 103 IYPEVVHMFAVNMFRTLPPSSNP-TGAEF-DPEEDEPTLEAAWPHLQLVYEFFLRFLESP 160
Query: 192 DTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 251
D IAK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 161 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 220
Query: 252 YRFIYETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLS 311
YRFIYETE H NGFALP+KEEHK+FL++ LLPLHK K +++YH QL+
Sbjct: 221 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 280
Query: 312 YCITQFVEKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXXXXXXATQGAEFQRCMVPLF 371
YC+ QF+EKD L + V+ LLKYWP T+ K + +EF + M PLF
Sbjct: 281 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 340
Query: 372 RQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQS 423
RQ+A+C++S HFQVAERAL+ WNNE+I+SLI+ N ILPI+F +L +N ++
Sbjct: 341 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,239,621
Number of Sequences: 62578
Number of extensions: 429307
Number of successful extensions: 1163
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 8
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)