Query 011191
Match_columns 491
No_of_seqs 185 out of 318
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 8E-156 2E-160 1183.4 39.9 417 64-484 40-456 (457)
2 PF01603 B56: Protein phosphat 100.0 4E-125 1E-129 991.9 30.4 407 68-481 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 1.4E-36 2.9E-41 283.4 14.1 135 319-486 35-169 (170)
4 PLN00122 serine/threonine prot 97.7 0.00025 5.3E-09 67.1 10.2 32 57-88 36-67 (170)
5 PF01602 Adaptin_N: Adaptin N 91.1 3.2 7E-05 44.8 13.1 175 207-394 341-520 (526)
6 PF05918 API5: Apoptosis inhib 87.8 8 0.00017 43.3 13.1 89 305-393 240-340 (556)
7 KOG1060 Vesicle coat complex A 83.1 19 0.00041 41.8 13.2 151 284-455 319-471 (968)
8 PF01602 Adaptin_N: Adaptin N 76.7 1.1E+02 0.0025 32.8 18.3 241 178-445 246-486 (526)
9 PF14500 MMS19_N: Dos2-interac 76.2 57 0.0012 33.0 13.2 169 211-388 5-208 (262)
10 PF12348 CLASP_N: CLASP N term 75.4 34 0.00074 32.8 11.0 104 339-445 19-126 (228)
11 PF12460 MMS19_C: RNAPII trans 74.5 1.3E+02 0.0027 32.3 19.0 201 205-412 189-410 (415)
12 cd03562 CID CID (CTD-Interacti 63.8 34 0.00073 29.6 7.4 91 307-397 17-110 (114)
13 smart00582 RPR domain present 62.5 21 0.00046 31.1 5.9 86 311-396 16-108 (121)
14 PF04388 Hamartin: Hamartin pr 59.5 2.3E+02 0.0051 32.6 15.0 150 207-378 6-161 (668)
15 KOG1992 Nuclear export recepto 54.9 4.3E+02 0.0094 31.4 16.3 332 98-443 414-838 (960)
16 PF08389 Xpo1: Exportin 1-like 52.6 68 0.0015 28.1 7.6 103 323-441 7-114 (148)
17 COG5656 SXM1 Importin, protein 51.6 4.7E+02 0.01 30.9 15.7 40 264-303 433-474 (970)
18 PF10508 Proteasom_PSMB: Prote 50.7 1.7E+02 0.0036 32.4 11.7 79 368-453 118-200 (503)
19 PF12783 Sec7_N: Guanine nucle 49.6 1.9E+02 0.0042 26.6 10.4 112 342-457 37-160 (168)
20 PF01417 ENTH: ENTH domain; I 49.3 62 0.0014 28.6 6.8 90 351-442 24-121 (125)
21 PF12783 Sec7_N: Guanine nucle 48.6 60 0.0013 30.0 6.8 80 243-324 70-150 (168)
22 COG5215 KAP95 Karyopherin (imp 46.8 91 0.002 35.4 8.6 105 368-482 262-389 (858)
23 KOG0213 Splicing factor 3b, su 46.0 2.4E+02 0.0052 33.2 11.9 241 137-395 569-825 (1172)
24 KOG2137 Protein kinase [Signal 43.5 2.7E+02 0.0059 32.3 11.9 108 325-441 350-457 (700)
25 COG5215 KAP95 Karyopherin (imp 43.1 3.3E+02 0.0072 31.2 12.2 127 255-383 560-694 (858)
26 PF08767 CRM1_C: CRM1 C termin 42.6 4.1E+02 0.0089 27.6 14.4 35 356-394 156-190 (319)
27 cd03567 VHS_GGA VHS domain fam 37.6 3E+02 0.0066 25.2 9.5 79 315-393 26-111 (139)
28 PF12348 CLASP_N: CLASP N term 37.5 3.7E+02 0.008 25.6 14.4 177 215-394 17-202 (228)
29 PF12719 Cnd3: Nuclear condens 36.3 3.6E+02 0.0078 27.4 10.8 175 268-444 4-209 (298)
30 PTZ00429 beta-adaptin; Provisi 35.6 7.9E+02 0.017 28.9 17.3 61 266-333 65-125 (746)
31 PF03378 CAS_CSE1: CAS/CSE pro 34.6 6.2E+02 0.013 27.6 12.8 224 112-381 26-254 (435)
32 PF08167 RIX1: rRNA processing 32.6 1.8E+02 0.0038 27.2 7.3 51 204-254 66-117 (165)
33 KOG1525 Sister chromatid cohes 32.3 1.1E+03 0.024 29.6 20.1 280 69-393 11-302 (1266)
34 smart00324 RhoGAP GTPase-activ 31.1 2.6E+02 0.0057 25.5 8.2 89 177-275 56-146 (174)
35 cd03561 VHS VHS domain family; 30.8 3.9E+02 0.0084 23.8 9.2 83 313-395 23-109 (133)
36 cd03572 ENTH_epsin_related ENT 29.8 2.2E+02 0.0048 25.7 7.0 90 346-442 20-119 (122)
37 PF08578 DUF1765: Protein of u 28.5 4E+02 0.0087 23.7 8.5 105 328-436 5-120 (126)
38 cd07920 Pumilio Pumilio-family 28.4 6.2E+02 0.013 25.4 16.2 70 321-392 141-211 (322)
39 PF04499 SAPS: SIT4 phosphatas 28.2 5.2E+02 0.011 28.6 11.0 100 178-277 33-149 (475)
40 PF06757 Ins_allergen_rp: Inse 27.6 5E+02 0.011 24.4 9.5 56 347-404 103-164 (179)
41 PF09059 TyeA: TyeA; InterPro 27.1 1.1E+02 0.0024 26.1 4.3 47 318-364 15-61 (87)
42 PTZ00429 beta-adaptin; Provisi 26.7 1.1E+03 0.024 27.8 18.5 136 245-393 404-541 (746)
43 cd03568 VHS_STAM VHS domain fa 26.6 5E+02 0.011 23.8 9.1 81 315-395 25-107 (144)
44 cd08324 CARD_NOD1_CARD4 Caspas 26.4 55 0.0012 27.8 2.4 38 206-243 47-84 (85)
45 PF12290 DUF3802: Protein of u 26.3 1.6E+02 0.0035 26.3 5.3 51 306-356 39-104 (113)
46 COG5593 Nucleic-acid-binding p 25.8 6.7E+02 0.015 28.5 11.0 114 266-402 306-425 (821)
47 KOG1967 DNA repair/transcripti 25.7 4.1E+02 0.0088 32.0 9.8 143 328-476 868-1025(1030)
48 KOG4553 Uncharacterized conser 24.6 8.6E+02 0.019 30.0 12.1 139 171-321 356-529 (1398)
49 cd03571 ENTH_epsin ENTH domain 24.5 4.1E+02 0.0089 23.9 7.8 86 350-442 21-118 (123)
50 PF12755 Vac14_Fab1_bd: Vacuol 23.1 4.8E+02 0.01 22.3 8.4 72 363-440 21-95 (97)
51 KOG0949 Predicted helicase, DE 22.3 5.3E+02 0.012 31.5 9.9 103 375-482 808-916 (1330)
52 KOG4413 26S proteasome regulat 22.3 6.5E+02 0.014 27.1 9.7 107 345-454 100-212 (524)
53 cd03569 VHS_Hrs_Vps27p VHS dom 21.8 6.2E+02 0.013 23.1 9.4 80 315-394 29-110 (142)
54 cd04383 RhoGAP_srGAP RhoGAP_sr 21.7 2.6E+02 0.0056 26.6 6.4 48 177-230 72-120 (188)
55 KOG2188 Predicted RNA-binding 21.4 1.3E+03 0.028 26.7 15.7 198 211-426 321-554 (650)
56 cd07920 Pumilio Pumilio-family 21.3 8.4E+02 0.018 24.4 13.2 22 202-226 92-113 (322)
57 cd00020 ARM Armadillo/beta-cat 21.0 2.3E+02 0.005 23.2 5.3 42 195-236 39-80 (120)
58 PF12830 Nipped-B_C: Sister ch 20.6 3.8E+02 0.0083 25.4 7.3 76 366-452 5-84 (187)
59 cd00020 ARM Armadillo/beta-cat 20.4 4.7E+02 0.01 21.2 7.8 65 369-440 49-118 (120)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-156 Score=1183.44 Aligned_cols=417 Identities=67% Similarity=1.121 Sum_probs=412.6
Q ss_pred CCcCCCCCCCCCChHHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 011191 64 FSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISIN 143 (491)
Q Consensus 64 ~~~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~N 143 (491)
..+++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++++.+|+++++|+++|
T Consensus 40 ~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~n 119 (457)
T KOG2085|consen 40 VELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVN 119 (457)
T ss_pred CCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHH
Q 011191 144 IFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPRERE 223 (491)
Q Consensus 144 iFR~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd 223 (491)
|||+|||..++++ +|+|||||++|++|||||+||++|+||++||++|+++||+||||+||++||++||||||||||
T Consensus 120 ifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe 195 (457)
T KOG2085|consen 120 IFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRERE 195 (457)
T ss_pred hhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHH
Confidence 9999999999874 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCc
Q 011191 224 YLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPV 303 (491)
Q Consensus 224 ~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~ 303 (491)
+|||+||||||||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.|||||||+++++
T Consensus 196 ~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l 275 (457)
T KOG2085|consen 196 FLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSL 275 (457)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH
Q 011191 304 AMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF 383 (491)
Q Consensus 304 ~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf 383 (491)
+.||+||+|||+||++|||+|++.||+||+||||+|||+||||||+||||||++++|.+|++||+|||+|||+|++|+||
T Consensus 276 ~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HF 355 (457)
T KOG2085|consen 276 SLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHF 355 (457)
T ss_pred cccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 011191 384 QVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAK 463 (491)
Q Consensus 384 qVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~ 463 (491)
|||||||++|||+||+++|++|+++|+|||||+||+++++|||++|+++++||+|+|||||++||++|+++|++++.+++
T Consensus 356 QVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~ 435 (457)
T KOG2085|consen 356 QVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEK 435 (457)
T ss_pred HHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 011191 464 EVEEQRELTWKRLADVAEQRR 484 (491)
Q Consensus 464 ~~~~~r~~~W~~l~~~A~~~~ 484 (491)
+.+++|+++|++||++|+.++
T Consensus 436 ~~~~~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 436 ETEEKREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999998875
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=4.5e-125 Score=991.90 Aligned_cols=407 Identities=61% Similarity=1.058 Sum_probs=360.3
Q ss_pred CCCCCCCCChHHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHHHHHHHHHhcCC--CCCChhHHHHHHHHHHhhhc
Q 011191 68 PLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGS--AKITENCQEEMIKMISINIF 145 (491)
Q Consensus 68 ~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~~L~EL~~~v~s~~--~~l~e~~~~~i~~Mi~~NiF 145 (491)
|||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++|++++. +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHHH
Q 011191 146 RCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYL 225 (491)
Q Consensus 146 R~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~L 225 (491)
|++||.+... +|+|||+++.||+|||||+||++|++|++++++|+ +|+|||++|+.+|+++|+|||||||++|
T Consensus 81 R~lP~~~~~~-----~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~l 153 (409)
T PF01603_consen 81 RPLPPIPNPS-----FDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYL 153 (409)
T ss_dssp S-----SS-------S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHH
T ss_pred CCCCCccccc-----CCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999763 67899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCccc
Q 011191 226 KTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAM 305 (491)
Q Consensus 226 ktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~ 305 (491)
+++||||||||+++|++||++|+++|++|+||+++|+||+|||||+|||||||++|||+||+.|+.++|+|||++++++.
T Consensus 154 k~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~ 233 (409)
T PF01603_consen 154 KTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSS 233 (409)
T ss_dssp HHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGG
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHH
Q 011191 306 YHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQV 385 (491)
Q Consensus 306 y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqV 385 (491)
||+||+||+++|++|||+|+..+++||+||||+||++|||+||+|+++||+.+++++|++++.|+|++||+|++|+||||
T Consensus 234 y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 234 YHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp THHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 011191 386 AERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEV 465 (491)
Q Consensus 386 AErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~ 465 (491)
|||||++|+|+++++++++|++.|+|+|+|+|++++++|||++||++|.+|+++|++|||++|++|.++|+++++++++.
T Consensus 314 AErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~ 393 (409)
T PF01603_consen 314 AERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAR 393 (409)
T ss_dssp HHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011191 466 EEQRELTWKRLADVAE 481 (491)
Q Consensus 466 ~~~r~~~W~~l~~~A~ 481 (491)
+++|+++|++|+++|+
T Consensus 394 ~~~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 394 EKKRKKKWKKIEEAAK 409 (409)
T ss_dssp SHHHHHHHTT-S----
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.4e-36 Score=283.41 Aligned_cols=135 Identities=59% Similarity=0.905 Sum_probs=130.9
Q ss_pred HhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhH
Q 011191 319 EKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHI 398 (491)
Q Consensus 319 ~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i 398 (491)
...+.++...+++|.+|||++++.||.+||++| ||||||++|+|++|
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 456888999999999999999999999999999 99999999999999
Q ss_pred HHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011191 399 VSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKRLAD 478 (491)
Q Consensus 399 ~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~ 478 (491)
+++|.+|+.+|+|||||+|++++++|||++|++++++|+|+||||||+||++|+++|++++.++++.+++|+++|++|++
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC
Q 011191 479 VAEQRRGE 486 (491)
Q Consensus 479 ~A~~~~~~ 486 (491)
+|+++++.
T Consensus 162 ~A~~~~~~ 169 (170)
T PLN00122 162 AAAAKAIT 169 (170)
T ss_pred HHHhccCC
Confidence 99998754
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.72 E-value=0.00025 Score=67.14 Aligned_cols=32 Identities=59% Similarity=0.902 Sum_probs=28.1
Q ss_pred cCCCCCCCCcCCCCCCCCCChHHhHHHHHHHH
Q 011191 57 VATPPPMFSIEPLPLFRDVPVSERQNLFLRKL 88 (491)
Q Consensus 57 ~~~~~~~~~~~~lp~l~dv~~~e~~~lf~~Kl 88 (491)
..++.....+++||+|+|||.++|++||++||
T Consensus 36 ~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 36 VNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHH
Confidence 33445678889999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.05 E-value=3.2 Score=44.83 Aligned_cols=175 Identities=14% Similarity=0.193 Sum_probs=112.0
Q ss_pred HHHHhhhc-CCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHH
Q 011191 207 VLKLLDLF-DSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEE 285 (491)
Q Consensus 207 i~~Ll~lf-dSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKee 285 (491)
+..|+..+ +..|+.=|..+-.-+..+-.++..--.+....+-++ +.... ..-..|+...+..++... ..+++.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~l----l~~~~-~~~~~~~~~~i~~ll~~~-~~~~~~ 414 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKL----LEISG-DYVSNEIINVIRDLLSNN-PELREK 414 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHH----HHCTG-GGCHCHHHHHHHHHHHHS-TTTHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHh----hhhcc-ccccchHHHHHHHHhhcC-hhhhHH
Confidence 45555556 555666666666666666666665544544443333 32222 223566666677777553 222222
Q ss_pred HHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccC--cHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHH
Q 011191 286 HKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYK--LADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEF 363 (491)
Q Consensus 286 hk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~--La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f 363 (491)
- ...|+-+...-.....-.-..+|+..|.+..+. .+..+++.+...|...+..-+...|..+..+....+.++-
T Consensus 415 ~----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 415 I----LKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp H----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred H----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh
Confidence 2 233333333344444567788999999888877 8999999999999988887888888888888877665444
Q ss_pred HhhHHHHHHHHHHHhC--CCcHHHHHHHHHhhc
Q 011191 364 QRCMVPLFRQIARCLN--SSHFQVAERALFLWN 394 (491)
Q Consensus 364 ~~i~~~lF~~ia~cl~--S~hfqVAErAL~~w~ 394 (491)
.+ .+...+..+.. |.++.|-+||.++|.
T Consensus 491 ~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 491 QN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 43 45556666667 999999999999874
No 6
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.79 E-value=8 Score=43.31 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=52.0
Q ss_pred cchHhHHHHHHH---HHHhccCcH---HHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHh
Q 011191 305 MYHQQLSYCITQ---FVEKDYKLA---DTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCL 378 (491)
Q Consensus 305 ~y~~qL~~ci~q---f~~KDp~La---~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl 378 (491)
..-..+.+|+.+ |+.+...-+ ..+.+.++-.|=......++-+|..+.|+...+...+-..++.++|..|-..+
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 345667788887 555555433 34444555445455558899999999999999988778888899999986444
Q ss_pred ------CCCcHHHHHHHHHhh
Q 011191 379 ------NSSHFQVAERALFLW 393 (491)
Q Consensus 379 ------~S~hfqVAErAL~~w 393 (491)
.+.+|-.+|..|+.+
T Consensus 320 P~~~~~~~l~fs~vEcLL~af 340 (556)
T PF05918_consen 320 PSKKTEPKLQFSYVECLLYAF 340 (556)
T ss_dssp ----------HHHHHHHHHHH
T ss_pred CCCCCCCcccchHhhHHHHHH
Confidence 345677777766554
No 7
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=19 Score=41.77 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHH--HHHHHHHHhCChh
Q 011191 284 EEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFL--GELEEVLEATQGA 361 (491)
Q Consensus 284 eehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL--~ele~iLe~~~~~ 361 (491)
+.+++ .+.|+.|...+.-..| -+..||-++..++|+|..+.++ +|+=.+.-+-++..| +.|..++. ..
T Consensus 319 ~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lK---sFfv~ssDp~~vk~lKleiLs~La~---es 388 (968)
T KOG1060|consen 319 QVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLK---SFFVRSSDPTQVKILKLEILSNLAN---ES 388 (968)
T ss_pred HHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhh---ceEeecCCHHHHHHHHHHHHHHHhh---hc
Confidence 44443 7899999988877766 4667889999999999988665 444555555555443 33333332 22
Q ss_pred HHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011191 362 EFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFL 441 (491)
Q Consensus 362 ~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~ 441 (491)
. ...|++-+-.-+.|+|++||-.|..-. +....+...+-+-.+..|..-.++| +..|..-+..|+++|.
T Consensus 389 n----i~~ILrE~q~YI~s~d~~faa~aV~Ai------GrCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 389 N----ISEILRELQTYIKSSDRSFAAAAVKAI------GRCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIKRLL 457 (968)
T ss_pred c----HHHHHHHHHHHHhcCchhHHHHHHHHH------HHHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHHHHH
Confidence 2 345777788889999999888776543 3345555666666778888888889 8999999999999999
Q ss_pred HhCHHHHHHHHHHH
Q 011191 442 DMDAELFEECQNQY 455 (491)
Q Consensus 442 e~D~~lf~~c~~~~ 455 (491)
.+||.--.+...+.
T Consensus 458 q~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 458 QKDPAEHLEILFQL 471 (968)
T ss_pred hhChHHHHHHHHHH
Confidence 99997766665543
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=76.70 E-value=1.1e+02 Score=32.85 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhc
Q 011191 178 QLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYE 257 (491)
Q Consensus 178 qlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e 257 (491)
.++|+....++.-++.+ . .-...+..|+.++.+.|+.=|-..-..|+.|-... .+.+...-..+| ++..
T Consensus 246 ~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~--~l~~ 314 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILF--FLLY 314 (526)
T ss_dssp HHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHH--HHHC
T ss_pred HHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhh--eecC
Confidence 55666665554422221 1 22456777888999999988877777777766654 344442211111 2221
Q ss_pred ccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCC
Q 011191 258 TERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWP 337 (491)
Q Consensus 258 ~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP 337 (491)
.+...=-...|+++..+.+- +...-....|+.-.+...-..|...+...+...+++.+.-..++++.+++.=-
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 22222224457777777642 22222333344333222233488889999999999999999999998888877
Q ss_pred CCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchhhchHHH
Q 011191 338 LTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEAL 417 (491)
Q Consensus 338 ~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L 417 (491)
..+..-.--.+..+..++... ++....+...+++.+.. -.+-. + ++..+|-=-.+...+.. .+ ..+-++..+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~---~~~~~-~-~~~~~wilGEy~~~~~~-~~-~~~~~~~~l 459 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELLED---ISSPE-A-LAAAIWILGEYGELIEN-TE-SAPDILRSL 459 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHHTS---SSSHH-H-HHHHHHHHHHHCHHHTT-TT-HHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH---hhHHH-H-HHHHHhhhcccCCcccc-cc-cHHHHHHHH
Confidence 655544444466677776553 33344444455444443 12222 3 33334432223233333 11 233344444
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHhCH
Q 011191 418 EKNIQSHWNQAVHGLTVNVRKMFLDMDA 445 (491)
Q Consensus 418 ~~~s~~HWn~~Vr~la~~vlk~l~e~D~ 445 (491)
...... =+..|+..+..++--+...+|
T Consensus 460 ~~~~~~-~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 460 IENFIE-ESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHTT-SHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhcc-ccHHHHHHHHHHHHHHHhhCC
Confidence 443222 145577666666433333343
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.21 E-value=57 Score=33.02 Aligned_cols=169 Identities=18% Similarity=0.265 Sum_probs=85.3
Q ss_pred hhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhc-ccCCcChHHHHHHHHHHHhcCCCC--------
Q 011191 211 LDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYE-TERHSGIGELLEILGSIINGFALP-------- 281 (491)
Q Consensus 211 l~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e-~e~h~GIaELLeIlgsIIngfa~P-------- 281 (491)
=+.+-|+|+..|..--.+|..+-.+.... .+.+.-.+.+.+|.-+ -++|.++.+.|.-+..+++--..+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPD--FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHh--hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHH
Confidence 34456788888877666666666654421 1222222333343322 256666666666666555321111
Q ss_pred ----------ch-HHHHHHHHHHHhccCCCC--CcccchHhHHHHHHHHH--HhccC---cHHHHHHHhhhhCCCCCChh
Q 011191 282 ----------MK-EEHKLFLVRALLPLHKPK--PVAMYHQQLSYCITQFV--EKDYK---LADTVIRGLLKYWPLTNCQK 343 (491)
Q Consensus 282 ----------LK-eehk~fl~~vLlPLhk~~--~~~~y~~qL~~ci~qf~--~KDp~---La~~vi~~llk~WP~tns~K 343 (491)
-. +..+....++|.=|.... .+....+.+.+.+++.+ ||||. ++..+++.+++.||..
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~---- 158 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS---- 158 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc----
Confidence 10 111111112222121111 11223445666777776 89998 5678889999999942
Q ss_pred HhHHHHHHHHHHHhCChhHHH-------h-hHHHHHHHHHHHhCCCcHHHHHH
Q 011191 344 EVLFLGELEEVLEATQGAEFQ-------R-CMVPLFRQIARCLNSSHFQVAER 388 (491)
Q Consensus 344 evlFL~ele~iLe~~~~~~f~-------~-i~~~lF~~ia~cl~S~hfqVAEr 388 (491)
-|..++-+++..-=|.+|. + -...|=..|..|+.|.+ ..|+-
T Consensus 159 --~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~ 208 (262)
T PF14500_consen 159 --EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPF 208 (262)
T ss_pred --hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHH
Confidence 2344555554421133332 1 23467778888888754 33443
No 10
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=75.37 E-value=34 Score=32.80 Aligned_cols=104 Identities=14% Similarity=0.252 Sum_probs=65.1
Q ss_pred CCChhHhHHHHHHHHHHHhC----ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchhhch
Q 011191 339 TNCQKEVLFLGELEEVLEAT----QGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIF 414 (491)
Q Consensus 339 tns~KevlFL~ele~iLe~~----~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~Pii~ 414 (491)
.+=.+.+--|..|..++..- .+..|...+..+...|+.+++|.+.+|+-.|+.++.. +.......-...++.++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~--l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSD--LARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHH--HHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHhHhHHHHHHHHH
Confidence 34456677788888887755 2344444455566789999999999999999988765 33344444555567788
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHhCH
Q 011191 415 EALEKNIQSHWNQAVHGLTVNVRKMFLDMDA 445 (491)
Q Consensus 415 p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~ 445 (491)
|.|.+..... ++.|+..|.+++..+.+..+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 8887754333 78999999999999888776
No 11
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=74.53 E-value=1.3e+02 Score=32.28 Aligned_cols=201 Identities=17% Similarity=0.191 Sum_probs=120.7
Q ss_pred HHHHHHhhh-cCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCch
Q 011191 205 SFVLKLLDL-FDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMK 283 (491)
Q Consensus 205 ~Fi~~Ll~l-fdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLK 283 (491)
.++.+++.+ ..++|+..|-..-..+-.+..||..- ..+...+...+... ........-...++++.-|.+|..+-..
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 477888887 66778888888888888888896532 23444443333332 1222222334556777666666443323
Q ss_pred HHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHh-c----------------cCcHHHHHHHhhhhCCCCCChhHhH
Q 011191 284 EEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEK-D----------------YKLADTVIRGLLKYWPLTNCQKEVL 346 (491)
Q Consensus 284 eehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~K-D----------------p~La~~vi~~llk~WP~tns~Kevl 346 (491)
+.-..+ ...|+-|...+.++. ..+.....++.. | -++...++..|+..+-.++.....-
T Consensus 267 ~~~~~~-~~~L~~lL~~~~~g~---~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 267 PLATEL-LDKLLELLSSPELGQ---QAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred chHHHH-HHHHHHHhCChhhHH---HHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 333333 344555666644332 333333333322 1 1234455666666666666545566
Q ss_pred HHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc---chhHHHHHhhccccchhh
Q 011191 347 FLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN---NEHIVSLIAQNRNVILPI 412 (491)
Q Consensus 347 FL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~---N~~i~~li~~n~~~i~Pi 412 (491)
+|.=+..++..++.+-...-+..|+..+-+|++.++..|-..+|.... .+. ..++.+|-+.++|.
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPR 410 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHH
Confidence 688999999999988888888889999999999999977777664432 222 44555555554444
No 12
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=63.80 E-value=34 Score=29.61 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=69.2
Q ss_pred hHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCC---hhHHHhhHHHHHHHHHHHhCCCcH
Q 011191 307 HQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQ---GAEFQRCMVPLFRQIARCLNSSHF 383 (491)
Q Consensus 307 ~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~---~~~f~~i~~~lF~~ia~cl~S~hf 383 (491)
.++-..-+++++..+...+..++..+.++=-.+.+.+.+.+|..+.+|+-.+. ...|.....++|.....-.+..+-
T Consensus 17 S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r 96 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTR 96 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34555567788888888999999999999989999999999999999998763 456667668888666664555555
Q ss_pred HHHHHHHHhhcchh
Q 011191 384 QVAERALFLWNNEH 397 (491)
Q Consensus 384 qVAErAL~~w~N~~ 397 (491)
+=..+-+.+|....
T Consensus 97 ~kl~rl~~iW~~~~ 110 (114)
T cd03562 97 KKLERLLNIWEERF 110 (114)
T ss_pred HHHHHHHHHccCCC
Confidence 55667778887643
No 13
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=62.50 E-value=21 Score=31.08 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh---hHHH----hhHHHHHHHHHHHhCCCcH
Q 011191 311 SYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG---AEFQ----RCMVPLFRQIARCLNSSHF 383 (491)
Q Consensus 311 ~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~---~~f~----~i~~~lF~~ia~cl~S~hf 383 (491)
..-+++|+-.+...+..++..+.++-..+.+.+.+..|.-+.+|+-.... ..|. +.....|..+.......+-
T Consensus 16 I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 95 (121)
T smart00582 16 IQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETK 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34455666566667777888888888888888999999999999986532 2444 4555566666655554566
Q ss_pred HHHHHHHHhhcch
Q 011191 384 QVAERALFLWNNE 396 (491)
Q Consensus 384 qVAErAL~~w~N~ 396 (491)
+=..+-+.+|...
T Consensus 96 ~ki~kll~iW~~~ 108 (121)
T smart00582 96 KKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHhcC
Confidence 6777888999874
No 14
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=59.50 E-value=2.3e+02 Score=32.65 Aligned_cols=150 Identities=22% Similarity=0.253 Sum_probs=85.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEH 286 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeeh 286 (491)
|.+|+.+++|.|..+.+.+|..+++.... +.-+++ -|.+..|..+| |-.-.++||.+ +.-| -+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~l~~y~~~t----~s~~~~~il~~----~~~P---~~ 68 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNS--DREPWL----VNGLVDYYLST----NSQRALEILVG----VQEP---HD 68 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHH----HHHHHHHHhhc----CcHHHHHHHHh----cCCc---cH
Confidence 67899999999999999999999998875 222343 33445554444 55566777764 4444 23
Q ss_pred HHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHH-----HHHHhhhhCCCCCChhH-hHHHHHHHHHHHhCCh
Q 011191 287 KLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADT-----VIRGLLKYWPLTNCQKE-VLFLGELEEVLEATQG 360 (491)
Q Consensus 287 k~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~-----vi~~llk~WP~tns~Ke-vlFL~ele~iLe~~~~ 360 (491)
|.||.++==-+.++ .|--+....+..|+..+|.-... ++.-|+|.==...+.-- ..-|.-|.-+|+.++
T Consensus 69 K~~~~~l~~~~~~~----~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip- 143 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP----SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP- 143 (668)
T ss_pred HHHHHHHHHHHcCc----hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc-
Confidence 44443332222222 24445555667777777764442 23344444333222211 122333334445443
Q ss_pred hHHHhhHHHHHHHHHHHh
Q 011191 361 AEFQRCMVPLFRQIARCL 378 (491)
Q Consensus 361 ~~f~~i~~~lF~~ia~cl 378 (491)
......+..||.++++++
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 344566777888888777
No 15
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.89 E-value=4.3e+02 Score=31.41 Aligned_cols=332 Identities=16% Similarity=0.220 Sum_probs=173.9
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhc----CC-CCCChhHHHHHHHHHHhhhcccCCC-CCCCCCCCCCCCCCCCCCC--
Q 011191 98 NDTMKSVREKEIKRQTLLELVDFIQS----GS-AKITENCQEEMIKMISINIFRCLPP-ASHENTGQEVVDPEEDDPY-- 169 (491)
Q Consensus 98 ~dp~~d~~~Ke~K~~~L~EL~~~v~s----~~-~~l~e~~~~~i~~Mi~~NiFR~lPp-~~~~~~~~~~~d~eedep~-- 169 (491)
+||+.|=+.|+ ...-|+--+.. .+ |..+-.-..++.+-+..+|-+.|-. ..+... +.-. |..-+
T Consensus 414 ~nPS~nWk~kd----~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~p---ilka-~aIKy~~ 485 (960)
T KOG1992|consen 414 KNPSGNWKKKD----RAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFP---ILKA-DAIKYIY 485 (960)
T ss_pred cCCCccccccc----hhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcccccc---chhh-cccceee
Confidence 35665554443 33344444432 12 2333345667888888888887654 222211 0001 11111
Q ss_pred ---CCCCCcchHHHHHHHHHHHhcCC-CChHHHhccCC-----------------------HHHHHHHhhhcCCCChhHH
Q 011191 170 ---LEPSWPHLQLVYELLLRYVVSSD-TDTKIAKRYID-----------------------HSFVLKLLDLFDSEDPRER 222 (491)
Q Consensus 170 ---~e~sWpHLqlVYeillrfv~s~~-~d~~~~k~~id-----------------------~~Fi~~Ll~lfdSeDprER 222 (491)
..+.=+||--..-.+.||++++. .=.+.|..+|+ -..+.+|+.-++.++.-|-
T Consensus 486 ~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~En 565 (960)
T KOG1992|consen 486 TFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAEN 565 (960)
T ss_pred eecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCccccc
Confidence 23556788888888888887632 12223332222 2236677788899999999
Q ss_pred HHHHHHHHHHhhccc----CchH-HHHHHHH-----------HHHHHhhhccc-------CCcC---hHHHHHHHHHHHh
Q 011191 223 EYLKTILHRIYGKFM----VHRP-FIRKAIN-----------NIFYRFIYETE-------RHSG---IGELLEILGSIIN 276 (491)
Q Consensus 223 d~LktiLhrIY~kf~----~~R~-fIrk~i~-----------n~f~~fi~e~e-------~h~G---IaELLeIlgsIIn 276 (491)
+||-..+-|+++--. .+-+ .+++-.. -.|+.|.+|+- .++| |+.+-+-|-..+
T Consensus 566 eylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~f- 644 (960)
T KOG1992|consen 566 EYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVF- 644 (960)
T ss_pred HHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH-
Confidence 999888888887322 1111 1222111 15888888862 4455 221111111000
Q ss_pred cCCCCchHHHHH----------------------HHHHHHhccCCCCCcc--cchHhHHHHHHHHHHhccCcHH--HHHH
Q 011191 277 GFALPMKEEHKL----------------------FLVRALLPLHKPKPVA--MYHQQLSYCITQFVEKDYKLAD--TVIR 330 (491)
Q Consensus 277 gfa~PLKeehk~----------------------fl~~vLlPLhk~~~~~--~y~~qL~~ci~qf~~KDp~La~--~vi~ 330 (491)
..=|.|+-.. .+..++-||.++.... -=-+.|...+..|+.+++.-.. .-+.
T Consensus 645 --q~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~ 722 (960)
T KOG1992|consen 645 --QTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLS 722 (960)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccch
Confidence 0001222111 1223333444333221 1124566677788888887665 5566
Q ss_pred HhhhhCCCCCChh--HhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHH---HHhhcchhHHHHHhh
Q 011191 331 GLLKYWPLTNCQK--EVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF-QVAERA---LFLWNNEHIVSLIAQ 404 (491)
Q Consensus 331 ~llk~WP~tns~K--evlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErA---L~~w~N~~i~~li~~ 404 (491)
++|-|.-+--.+| ..-=...+..|++.+++.+....+..+|--+-+-++++.- +-..+- +.+....+--..+.+
T Consensus 723 ~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e 802 (960)
T KOG1992|consen 723 GILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAE 802 (960)
T ss_pred hHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7777766544333 2223456788888999988877777666666555555441 111111 122223322233456
Q ss_pred ccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHh
Q 011191 405 NRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 405 n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~ 443 (491)
....|-|-+|..+.. +.|......+...+.+-++.+
T Consensus 803 ~~d~IQ~~~fg~l~e---~~ii~~l~~i~~~~~rk~~av 838 (960)
T KOG1992|consen 803 VIDGIQPGMFGMLLE---NFIIPELPKIILRVDRKIMAV 838 (960)
T ss_pred HHhhcchhHHHHHHH---HhccccchhhhhhhhHHHHHH
Confidence 667777888777764 578877777766665555443
No 16
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=52.56 E-value=68 Score=28.09 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=56.2
Q ss_pred CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCC-CcHH-HHHHHHHhhcchhHHH
Q 011191 323 KLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNS-SHFQ-VAERALFLWNNEHIVS 400 (491)
Q Consensus 323 ~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S-~hfq-VAErAL~~w~N~~i~~ 400 (491)
+++..+.....+.||..++. |+.++-.++.. ++... .....+++.+.+=+.+ .+-. -.+| ...+..
T Consensus 7 kl~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~-~~~L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~ 74 (148)
T PF08389_consen 7 KLAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHL-ELVLRILRILPEEITDFRRSSLSQER------RRELKD 74 (148)
T ss_dssp HHHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHH-HHHHHHHHHHHHHHHTSHCCHSHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHH-HHHHHHHHHHHHHHHhhhchhhhHHH------HHHHHH
Confidence 35667778888999999875 67666666554 33332 2334455555554443 1111 1111 344555
Q ss_pred HHhhccccchhhchHHHHHHhhcccc---HHHHHHHHHHHHHHH
Q 011191 401 LIAQNRNVILPIIFEALEKNIQSHWN---QAVHGLTVNVRKMFL 441 (491)
Q Consensus 401 li~~n~~~i~Pii~p~L~~~s~~HWn---~~Vr~la~~vlk~l~ 441 (491)
.+.++... ++..+.+....+.+ ..+...+..+++.+.
T Consensus 75 ~l~~~~~~----i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i 114 (148)
T PF08389_consen 75 ALRSNSPD----ILEILSQILSQSSSEANEELVKAALKCLKSWI 114 (148)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 56666444 44445554444444 666666666666543
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=51.60 E-value=4.7e+02 Score=30.88 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHhccCCCCCc
Q 011191 264 IGELLEILGSIIN--GFALPMKEEHKLFLVRALLPLHKPKPV 303 (491)
Q Consensus 264 IaELLeIlgsIIn--gfa~PLKeehk~fl~~vLlPLhk~~~~ 303 (491)
+.-.|.++.||++ .-..|+.-++..|+...++|-.+.++.
T Consensus 433 ~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg 474 (970)
T COG5656 433 AEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG 474 (970)
T ss_pred HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc
Confidence 4446777777777 333455566777777777777777654
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=50.66 E-value=1.7e+02 Score=32.37 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccc---cchh-hchHHHHHHhhccccHHHHHHHHHHHHHHHHh
Q 011191 368 VPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRN---VILP-IIFEALEKNIQSHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 368 ~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~---~i~P-ii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~ 443 (491)
..++..|..|+.++.-.||+.|..+..+ +..+.. .+++ -+.+.|.....+ =|..+|-.++.++-.+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~------l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK------LASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH------HhCCchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhc
Confidence 4588899999999999999999877654 222211 1211 125555554433 3778999999999999999
Q ss_pred CHHHHHHHHH
Q 011191 444 DAELFEECQN 453 (491)
Q Consensus 444 D~~lf~~c~~ 453 (491)
.+++++.|..
T Consensus 191 S~~~~~~~~~ 200 (503)
T PF10508_consen 191 SPEAAEAVVN 200 (503)
T ss_pred CHHHHHHHHh
Confidence 9999998875
No 19
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.60 E-value=1.9e+02 Score=26.60 Aligned_cols=112 Identities=20% Similarity=0.281 Sum_probs=72.7
Q ss_pred hhHhHHHHHHHHHHHhCCh-----h---HHHh-hHHHHHHHHHHHhCCCcHHHHHHHHHhhcc--hhHHHHHhhccccch
Q 011191 342 QKEVLFLGELEEVLEATQG-----A---EFQR-CMVPLFRQIARCLNSSHFQVAERALFLWNN--EHIVSLIAQNRNVIL 410 (491)
Q Consensus 342 ~KevlFL~ele~iLe~~~~-----~---~f~~-i~~~lF~~ia~cl~S~hfqVAErAL~~w~N--~~i~~li~~n~~~i~ 410 (491)
...++=|.-|+.+|+...+ + .|.. +-..+|..|.+.+.|++++|.++++.+.-+ .++...++.-.++++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777888774322 2 4443 347899999999999999999998854433 334445555556666
Q ss_pred hhchHHHHHHhh-ccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011191 411 PIIFEALEKNIQ-SHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEE 457 (491)
Q Consensus 411 Pii~p~L~~~s~-~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~ 457 (491)
+.++-.+..... ..| -|.++..+++-+.. ||.+.-+.=.+|..
T Consensus 117 ~~i~~~il~~~~~~~~---~k~~~Le~l~~l~~-~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 117 SHIILRILESDNSSLW---QKELALEILRELCK-DPQFLVDLFVNYDC 160 (168)
T ss_pred HHHHHHHHccCCCcHH---HHHHHHHHHHHHHh-ChhHHHHHHHHcCC
Confidence 666554443322 356 56778888888774 77777766666644
No 20
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=49.32 E-value=62 Score=28.58 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=55.7
Q ss_pred HHHHHHhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc------chhHHHHHhhccccchhhc-hHHHHHHhh
Q 011191 351 LEEVLEAT-QGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN------NEHIVSLIAQNRNVILPII-FEALEKNIQ 422 (491)
Q Consensus 351 le~iLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~i~Pii-~p~L~~~s~ 422 (491)
+.+|...+ +..++..++.-|.++|.. ....+..+.-.||.+.. ++.|+.-+..+...|-..- |.. ....-
T Consensus 24 l~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~-~d~~g 101 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQY-VDPKG 101 (125)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG----BBTTS
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeec-cCCCC
Confidence 44555544 447788877777777733 35677888888887643 4566666655555444431 111 11112
Q ss_pred ccccHHHHHHHHHHHHHHHH
Q 011191 423 SHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 423 ~HWn~~Vr~la~~vlk~l~e 442 (491)
..|...||..|..++.+|.|
T Consensus 102 ~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 102 KDQGQNVREKAKEILELLND 121 (125)
T ss_dssp TBHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHhCC
Confidence 35888999999999999953
No 21
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=48.65 E-value=60 Score=30.00 Aligned_cols=80 Identities=14% Similarity=0.321 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHH-HHHHHHHHhc
Q 011191 243 IRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLS-YCITQFVEKD 321 (491)
Q Consensus 243 Irk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~-~ci~qf~~KD 321 (491)
+|..+-..+.+.+.... ..=..-.|+|+..++..|..-||.|-..|+..++.|+..++..+.=++.++ .++..++ +|
T Consensus 70 lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~~ 147 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC-KD 147 (168)
T ss_pred HHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-hC
Confidence 44444444444333322 222345588999999999899999999999999999888776532244433 4555555 35
Q ss_pred cCc
Q 011191 322 YKL 324 (491)
Q Consensus 322 p~L 324 (491)
|.+
T Consensus 148 p~~ 150 (168)
T PF12783_consen 148 PQF 150 (168)
T ss_pred hhH
Confidence 543
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=46.82 E-value=91 Score=35.44 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhhcc---hhHHH-HH-hhc--------------cccchhhchHHHHHHh----hcc
Q 011191 368 VPLFRQIARCLNSSHFQVAERALFLWNN---EHIVS-LI-AQN--------------RNVILPIIFEALEKNI----QSH 424 (491)
Q Consensus 368 ~~lF~~ia~cl~S~hfqVAErAL~~w~N---~~i~~-li-~~n--------------~~~i~Pii~p~L~~~s----~~H 424 (491)
.-||...++.+.|+|-+||-.|..||.- |.+.. +. .+. ...|+|.++.-|.+-. ..-
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 3588889999999999999999999932 22211 11 111 2447888877777632 235
Q ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011191 425 WNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKRLADVAEQ 482 (491)
Q Consensus 425 Wn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~~ 482 (491)
||... .|..+|.+|-+...+.--+=.-.|-+ ..-|.+.|...+.++..
T Consensus 342 Wn~sm--aA~sCLqlfaq~~gd~i~~pVl~FvE--------qni~~~~w~nreaavmA 389 (858)
T COG5215 342 WNPSM--AASSCLQLFAQLKGDKIMRPVLGFVE--------QNIRSESWANREAAVMA 389 (858)
T ss_pred cchhh--hHHHHHHHHHHHhhhHhHHHHHHHHH--------HhccCchhhhHHHHHHH
Confidence 99654 46677877765543222211112222 22356789888877754
No 23
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=45.99 E-value=2.4e+02 Score=33.25 Aligned_cols=241 Identities=19% Similarity=0.267 Sum_probs=138.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCc----chHHHHHHHHHHHh--cCCCChHHHhccCCHHHHHHH
Q 011191 137 IKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWP----HLQLVYELLLRYVV--SSDTDTKIAKRYIDHSFVLKL 210 (491)
Q Consensus 137 ~~Mi~~NiFR~lPp~~~~~~~~~~~d~eedep~~e~sWp----HLqlVYeillrfv~--s~~~d~~~~k~~id~~Fi~~L 210 (491)
++|+.+|..-.+-....+.+. +.| +.++.|-|. |-..+..-||+.+- -|..|+..| .|++....+.|
T Consensus 569 VR~itAlalsalaeaa~Pygi-e~f-----DsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya-~yyTrevmlil 641 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATPYGI-EQF-----DSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA-SYYTREVMLIL 641 (1172)
T ss_pred hhhHHHHHHHHHHHhcCCcch-HHH-----HHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH-HHhHHHHHHHH
Confidence 455566655554443333322 223 236778886 77788888888774 345666665 47888889999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcC----hHHHHHHHHHHHhcCCCCchHHH
Q 011191 211 LDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSG----IGELLEILGSIINGFALPMKEEH 286 (491)
Q Consensus 211 l~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~G----IaELLeIlgsIIngfa~PLKeeh 286 (491)
+.-|+|||..=...+-.++.++-++--.--.|||..+--.|+..--.. +--| -..+.+.-.+|-+..-.
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~r-rmA~drr~ykqlv~ttv~ia~KvG~------ 714 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGR-RMALDRRNYKQLVDTTVEIAAKVGS------ 714 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhh-hhhccccchhhHHHHHHHHHHHhCc------
Confidence 999999998777776677777777777777788887766554432221 1111 11223333333321100
Q ss_pred HHHHHHHHhccCCCCCcccchHhHHHHHHHH------HHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh
Q 011191 287 KLFLVRALLPLHKPKPVAMYHQQLSYCITQF------VEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG 360 (491)
Q Consensus 287 k~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf------~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~ 360 (491)
.....|++.+|-.-+- .|..--...+... ..-|.+|-+..++|++--+-...+.--|||+.. .-+...+.
T Consensus 715 ~~~v~R~v~~lkde~e--~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf-g~V~~~lg- 790 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPE--QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF-GTVVNALG- 790 (1172)
T ss_pred hHHHHHHhhhhccccH--HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH-HHHHHHHh-
Confidence 1122344444443221 1111111122222 245778888999999988887666655665542 22222111
Q ss_pred hHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcc
Q 011191 361 AEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNN 395 (491)
Q Consensus 361 ~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N 395 (491)
...++...+|+.-+-.-+++....|-.+|+.+...
T Consensus 791 ~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 12234566777777888889888998888876654
No 24
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=43.50 E-value=2.7e+02 Score=32.29 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhh
Q 011191 325 ADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQ 404 (491)
Q Consensus 325 a~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~ 404 (491)
..+.|+-+.+. ..+-+--++++.-+.-|++.+++++|..-+.| .|-+|+++.-.++=|++|...-. +.+.+-
T Consensus 350 ~~p~l~pi~~~--~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~Ilp---lL~~S~~~~~~~iQ~~~L~~lpt--v~e~iD- 421 (700)
T KOG2137|consen 350 MLPALKPIYSA--SDPKQALLFILENMDLLKEKTPPEEVKEKILP---LLYRSLEDSDVQIQELALQILPT--VAESID- 421 (700)
T ss_pred hhHHHHHHhcc--CCcccchhhHHhhHHHHHhhCChHHHHHHHHH---HHHHHhcCcchhhHHHHHHhhhH--HHHhcc-
Confidence 34455555554 22223446777888888999999999765555 56899999999999999987643 333332
Q ss_pred ccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011191 405 NRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFL 441 (491)
Q Consensus 405 n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~ 441 (491)
-..+=-.|+|.|+..+..|=+..|+.-+.-++..++
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 223334578888888888889999887777776665
No 25
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=43.06 E-value=3.3e+02 Score=31.20 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=71.7
Q ss_pred hhcccCCcChHHH----HHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHH----hccCcHH
Q 011191 255 IYETERHSGIGEL----LEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVE----KDYKLAD 326 (491)
Q Consensus 255 i~e~e~h~GIaEL----LeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~----KDp~La~ 326 (491)
|+.+++.--+.|| +.++.+||+.+-.... .-...+...++.+..+..-+.-|....+-|...-. .-...++
T Consensus 560 ~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie-~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~ 638 (858)
T COG5215 560 ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE-DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS 638 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555456665 5688899988855443 22333455556665555334444444444433211 1122333
Q ss_pred HHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH
Q 011191 327 TVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF 383 (491)
Q Consensus 327 ~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf 383 (491)
.++-||.|---.+++.=-..-++.+.++-..+ .++|.....-+...|..|++|++.
T Consensus 639 ~fiPyl~~aln~~d~~v~~~avglvgdlantl-~~df~~y~d~~ms~LvQ~lss~~~ 694 (858)
T COG5215 639 KFIPYLTRALNCTDRFVLNSAVGLVGDLANTL-GTDFNIYADVLMSSLVQCLSSEAT 694 (858)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcChhh
Confidence 44444444444444443344455555554444 468999999999999999999753
No 26
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=42.57 E-value=4.1e+02 Score=27.56 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=26.3
Q ss_pred HhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q 011191 356 EATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN 394 (491)
Q Consensus 356 e~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~ 394 (491)
-.++++.|.. +..-+..++.+++..|++.+|....
T Consensus 156 ~~lp~~~f~~----~idsi~wg~kh~~~~I~~~~L~~l~ 190 (319)
T PF08767_consen 156 LQLPPEQFKL----VIDSIVWGFKHTNREISETGLNILL 190 (319)
T ss_dssp HHS-HHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHH----HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3467777765 4566778899999999999997654
No 27
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=37.56 E-value=3e+02 Score=25.18 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=59.4
Q ss_pred HHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhC------CCcHHHHH
Q 011191 315 TQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCM-VPLFRQIARCLN------SSHFQVAE 387 (491)
Q Consensus 315 ~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~------S~hfqVAE 387 (491)
.-.+..+|.-+...++.|.|-=-..|+.-++.-|..++.++..|...-...+. .....-+.+.++ ..|..|-+
T Consensus 26 cD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ 105 (139)
T cd03567 26 CEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKT 105 (139)
T ss_pred HHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 34567888889999999999888888888999999999999999875544444 334445555553 36889999
Q ss_pred HHHHhh
Q 011191 388 RALFLW 393 (491)
Q Consensus 388 rAL~~w 393 (491)
+.|.+.
T Consensus 106 kil~li 111 (139)
T cd03567 106 KIIELL 111 (139)
T ss_pred HHHHHH
Confidence 987553
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=37.49 E-value=3.7e+02 Score=25.57 Aligned_cols=177 Identities=13% Similarity=0.054 Sum_probs=93.6
Q ss_pred CCCChhHHHHHHHHHHHHhhcc--cCchHHHHHHHH---HHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHH
Q 011191 215 DSEDPREREYLKTILHRIYGKF--MVHRPFIRKAIN---NIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLF 289 (491)
Q Consensus 215 dSeDprERd~LktiLhrIY~kf--~~~R~fIrk~i~---n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~f 289 (491)
.+.|=.+|.---+-|.++...- ...++-+...+. ..+..-+ .+.+..-+.+.+.+++.+..+....+.+. ...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 4566666665555555554433 222222222222 1222211 12233345677778888877665554443 334
Q ss_pred HHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCC--hhHHHh--
Q 011191 290 LVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQ--GAEFQR-- 365 (491)
Q Consensus 290 l~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~--~~~f~~-- 365 (491)
+...|+.+..... ....+.-..|+..+++.-+-....++..+...+---|+.=-..-+.-+..++...+ ...+..
T Consensus 95 ~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 95 LLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 4556666666543 34556666788888876552233336666666666666555666778888888776 444443
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q 011191 366 CMVPLFRQIARCLNSSHFQVAERALFLWN 394 (491)
Q Consensus 366 i~~~lF~~ia~cl~S~hfqVAErAL~~w~ 394 (491)
....+.+.|.+|++..+..|=+.|-..|.
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 34778899999999999999887775553
No 29
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.31 E-value=3.6e+02 Score=27.38 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCCCchHHHH--HHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHh
Q 011191 268 LEILGSIINGFALPMKEEHK--LFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEV 345 (491)
Q Consensus 268 LeIlgsIIngfa~PLKeehk--~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~Kev 345 (491)
|.|.+........++.+... ..+...++|-........ ...=..|+..|+--|.+++...+.-+.+---.....=.+
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~v-R~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAV-RELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44555555544444444332 456666777777776644 333345777777667777776665555555333444445
Q ss_pred HHHHHHHHHHHhCChhHHHhhH--------HHHHHHHHHHhCCCcHH----HHHHHHHhhcchh------HHH-HH----
Q 011191 346 LFLGELEEVLEATQGAEFQRCM--------VPLFRQIARCLNSSHFQ----VAERALFLWNNEH------IVS-LI---- 402 (491)
Q Consensus 346 lFL~ele~iLe~~~~~~f~~i~--------~~lF~~ia~cl~S~hfq----VAErAL~~w~N~~------i~~-li---- 402 (491)
.-|+-+-+++-.-+...|.... ..+.+.+.+.+.+.+-. ++|--..+.-+.. ++. ++
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF 162 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYF 162 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 5566666665544443333222 34555556666655422 2222222222211 111 11
Q ss_pred ------hhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhC
Q 011191 403 ------AQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMD 444 (491)
Q Consensus 403 ------~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D 444 (491)
.+.-+.++.+.||+.-..+..| ...+......++..+.+..
T Consensus 163 ~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 163 NPSTEDNQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred CcccCCcHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 0122445555666666554444 3555555556666655554
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=35.58 E-value=7.9e+02 Score=28.88 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhh
Q 011191 266 ELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLL 333 (491)
Q Consensus 266 ELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~ll 333 (491)
+.-..+..+++-++.+ +-+.|....=.|.-+ +.-++++.-.++..+.||-.=..+.+|++-
T Consensus 65 DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~y------a~~~pelalLaINtl~KDl~d~Np~IRaLA 125 (746)
T PTZ00429 65 DVSYLFVDVVKLAPST-DLELKKLVYLYVLST------ARLQPEKALLAVNTFLQDTTNSSPVVRALA 125 (746)
T ss_pred CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHH------cccChHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4455666666666555 334443322222222 223466666666666777766667777664
No 31
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=34.63 E-value=6.2e+02 Score=27.63 Aligned_cols=224 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcC
Q 011191 112 QTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSS 191 (491)
Q Consensus 112 ~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~NiFR~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~ 191 (491)
+.|..|+..+..+...=+|-++..+++++.+ ..|..=|+...+.+-|...+..-
T Consensus 26 ~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~--------------------------~~e~~~p~~~~il~~L~~il~~v 79 (435)
T PF03378_consen 26 QLLQNLFALIEKPGSAENEYLMKCIMRVLSV--------------------------LQEDILPIAVEILQHLTAILKEV 79 (435)
T ss_dssp HHHHHHHHHHHTT-STC-HHHHHHHHHHHHH--------------------------STTTTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHH--------------------------hHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHH
Q 011191 192 DTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEIL 271 (491)
Q Consensus 192 ~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIl 271 (491)
.-+|+ +..++|-....+-.+...--....+.+..+--.++. .+..++.+-|.|. +...++||
T Consensus 80 ~kNPs--nP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P-----------~f~~ILq~dV~EF-----~PYvfQIl 141 (435)
T PF03378_consen 80 SKNPS--NPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP-----------PFQEILQQDVQEF-----IPYVFQIL 141 (435)
T ss_dssp HTS-----HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH-----------HHHHHHHTT-TTT-----HHHHHHHH
T ss_pred HhCCC--CcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH-----------HHHHHHHHHHHHH-----HHHHHHHH
Q ss_pred HHHHhcCC-CCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHH--HHHHHhhhhCCC--CCChhHhH
Q 011191 272 GSIINGFA-LPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLAD--TVIRGLLKYWPL--TNCQKEVL 346 (491)
Q Consensus 272 gsIIngfa-~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~--~vi~~llk~WP~--tns~Kevl 346 (491)
+.++.--. -|+-+..+.++.-.+-|-.--..-.. +.|...+..|++|+|.... .-+.+++...-+ ++..-+.-
T Consensus 142 a~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni--PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~ 219 (435)
T PF03378_consen 142 AQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI--PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY 219 (435)
T ss_dssp HHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH--HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc--CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH
Q ss_pred HHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCC
Q 011191 347 FLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSS 381 (491)
Q Consensus 347 FL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~ 381 (491)
-...++.|++.++.+.....+..+|..+-.-+++.
T Consensus 220 gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 220 GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
No 32
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=32.59 E-value=1.8e+02 Score=27.15 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCCChhH-HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHh
Q 011191 204 HSFVLKLLDLFDSEDPRE-REYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 254 (491)
Q Consensus 204 ~~Fi~~Ll~lfdSeDprE-Rd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~f 254 (491)
..++..|+..+.++||.- .......|.+||..--+.-.+.|......+-.|
T Consensus 66 ~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 66 SQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 356777888888777765 667777888888765565566666655544444
No 33
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.31 E-value=1.1e+03 Score=29.57 Aligned_cols=280 Identities=20% Similarity=0.283 Sum_probs=124.7
Q ss_pred CCCCCCCChHHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHhhhccc
Q 011191 69 LPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGS-AKITENCQEEMIKMISINIFRC 147 (491)
Q Consensus 69 lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~~L~EL~~~v~s~~-~~l~e~~~~~i~~Mi~~NiFR~ 147 (491)
+|....++..|-.+.+ +|+..|-.-+|=++ .+. +-+.-+.+.+.+.. -+-.+.=+..++..|=++|||-
T Consensus 11 ~~~~~~~s~~ell~rL-k~l~~~l~~~~qd~--~~~-------~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi 80 (1266)
T KOG1525|consen 11 LTSLNPISKDELLKRL-KKLANCLASLDQDN--LDL-------ASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRI 80 (1266)
T ss_pred ccccCcccHHHHHHHH-HHHHHHHhhcccCc--hhH-------HHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHH
Confidence 4555666666766665 89999988887443 111 12223333332211 1112333567778888888886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHH--------HHHHhhhcCCCCh
Q 011191 148 LPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSF--------VLKLLDLFDSEDP 219 (491)
Q Consensus 148 lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~F--------i~~Ll~lfdSeDp 219 (491)
.-|-. |+.++ .|.=||.++++-+.-. -|+. -.|+-+.| +. .+-+++-+|.
T Consensus 81 ~aPea---------------Py~~~---~lkdIf~~~~~q~~gL-~d~~--sp~f~r~~~lletl~~~k-~~l~~~l~d~ 138 (1266)
T KOG1525|consen 81 YAPEA---------------PYTDE---QLKDIFQLILSQFSGL-GDVE--SPYFKRYFYLLETLAKVK-FCLLMLLEDC 138 (1266)
T ss_pred hCCCC---------------CCcHH---HHHHHHHHHHHHHhhc-cCCC--CcchhhHHHHHHHHHHhH-HHheeeccch
Confidence 54322 33333 5677788877765321 1111 12333332 44 5667777777
Q ss_pred hHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHH-HHHHHhcCCCCchHHHHHHHHHHHhccC
Q 011191 220 REREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEI-LGSIINGFALPMKEEHKLFLVRALLPLH 298 (491)
Q Consensus 220 rERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeI-lgsIIngfa~PLKeehk~fl~~vLlPLh 298 (491)
.| .+..+.+-+|.-.-..++-.--.|.+++..-|-|.+.- -.|+|.+ |..++++.---.++. .-|...+|-..
T Consensus 139 ~e--~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v--~~e~L~~ll~~lv~~~~~~~~~a--~~la~~li~~~ 212 (1266)
T KOG1525|consen 139 QE--LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTV--QSELLDVLLENLVKPGRDTIKEA--DKLASDLIERC 212 (1266)
T ss_pred HH--HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhccCCCCccHHH--HHHHHHHHHHh
Confidence 65 33344333343221122211111444444444332211 1244442 223333321101111 11122223222
Q ss_pred CCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHH-HhCC-hhHHHhhHHHHHHHHHH
Q 011191 299 KPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVL-EATQ-GAEFQRCMVPLFRQIAR 376 (491)
Q Consensus 299 k~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iL-e~~~-~~~f~~i~~~lF~~ia~ 376 (491)
...-...+.+-|..|++++-..-.++...+.+-++.+|=..- | +.++-|-.+- +... .+++.. ..-+.+|+
T Consensus 213 a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p---~-ll~~vip~l~~eL~se~~~~Rl---~a~~lvg~ 285 (1266)
T KOG1525|consen 213 ADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAP---Q-LLLAVIPQLEFELLSEQEEVRL---KAVKLVGR 285 (1266)
T ss_pred hhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhH---H-HHHHHHHHHHHHHhcchHHHHH---HHHHHHHH
Confidence 333333444445555555544444455555555565553322 0 1122222221 1222 223322 34445567
Q ss_pred HhCCCcHHHHHHHHHhh
Q 011191 377 CLNSSHFQVAERALFLW 393 (491)
Q Consensus 377 cl~S~hfqVAErAL~~w 393 (491)
.++..+.+.++.=-.+|
T Consensus 286 ~~~~~~~~l~~~~~~~~ 302 (1266)
T KOG1525|consen 286 MFSDKDSQLSETYDDLW 302 (1266)
T ss_pred HHhcchhhhcccchHHH
Confidence 77777777775433444
No 34
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=31.07 E-value=2.6e+02 Score=25.50 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHH-HHHHHHHHHHhhcccCchHHHHHHHHHHHHHhh
Q 011191 177 LQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPRER-EYLKTILHRIYGKFMVHRPFIRKAINNIFYRFI 255 (491)
Q Consensus 177 LqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprER-d~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi 255 (491)
...|..+|.+|+.+-+ ...|+..+...+++...+.|..|| ..++.+ +.+.......+.+.+-..|++..
T Consensus 56 ~~~va~~lK~~Lr~Lp------~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Lp~~~~~~L~~l~~~l~~i~ 125 (174)
T smart00324 56 VHDVAGLLKLFLRELP------EPLIPYELYEEFIEAAKVEDETERLRALREL----ISLLPPANRATLRYLLAHLNRVA 125 (174)
T ss_pred HHHHHHHHHHHHHhCC------CccCCHHHHHHHHHHHhCCCHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHH
Confidence 4578888888887643 257888888888888887777665 334444 44444333333344445555544
Q ss_pred -hcccCCcChHHHHHHHHHHH
Q 011191 256 -YETERHSGIGELLEILGSII 275 (491)
Q Consensus 256 -~e~e~h~GIaELLeIlgsII 275 (491)
+...+.-++.-|-.++|..+
T Consensus 126 ~~~~~n~M~~~nLa~~f~P~l 146 (174)
T smart00324 126 EHSEENKMTARNLAIVFGPTL 146 (174)
T ss_pred hccccCCCCHHHHHHHHhccc
Confidence 22334445555655666544
No 35
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.81 E-value=3.9e+02 Score=23.84 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=59.5
Q ss_pred HHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHH-HHHHHHHHHhC---CCcHHHHHH
Q 011191 313 CITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMV-PLFRQIARCLN---SSHFQVAER 388 (491)
Q Consensus 313 ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~-~lF~~ia~cl~---S~hfqVAEr 388 (491)
=+.-.+..++.-+..+++.|.|.==..|+.-+..-|..++.++..|.+.-...+.. .....+-+.+. ..|.+|-++
T Consensus 23 ~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~k 102 (133)
T cd03561 23 ELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREK 102 (133)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 34445667777888888888777777899999999999999999988744444443 44444555554 469999999
Q ss_pred HHHhhcc
Q 011191 389 ALFLWNN 395 (491)
Q Consensus 389 AL~~w~N 395 (491)
++.+..+
T Consensus 103 il~ll~~ 109 (133)
T cd03561 103 ALELILA 109 (133)
T ss_pred HHHHHHH
Confidence 8866443
No 36
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.75 E-value=2.2e+02 Score=25.68 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHHHHhh---cchhHHHHHhhccccchhhchHHHHHHh
Q 011191 346 LFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF-QVAERALFLW---NNEHIVSLIAQNRNVILPIIFEALEKNI 421 (491)
Q Consensus 346 lFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErAL~~w---~N~~i~~li~~n~~~i~Pii~p~L~~~s 421 (491)
-.++||.++.-. ++.+|..++.-|.++|.. .|+|. .=|.+-|... -++.|...+.+|...|-- ......
T Consensus 20 y~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~----~~~f~g 92 (122)
T cd03572 20 YLYEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE----CANYKG 92 (122)
T ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH----HHHcCC
Confidence 345677665544 778999999999999997 88887 3455544332 356777777777643321 111111
Q ss_pred ------hccccHHHHHHHHHHHHHHHH
Q 011191 422 ------QSHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 422 ------~~HWn~~Vr~la~~vlk~l~e 442 (491)
-.-+++.||..|..+++++..
T Consensus 93 ~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 93 PPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 134889999999999998854
No 37
>PF08578 DUF1765: Protein of unknown function (DUF1765); InterPro: IPR013887 This entry represents a conserved region found in hypothetical proteins from fungi, mycetozoa and entamoebidae.
Probab=28.45 E-value=4e+02 Score=23.68 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=58.9
Q ss_pred HHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh------hHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHH
Q 011191 328 VIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG------AEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSL 401 (491)
Q Consensus 328 vi~~llk~WP~tns~KevlFL~ele~iLe~~~~------~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~l 401 (491)
+++.+.+==|.-++.+-...++-+++.+..... ..|. -.-.++-+-+.++|.|.++--|++.+.=|- -..
T Consensus 5 ~~~~~~~kTs~yd~~~~~~~~d~l~~~i~~~~~~~~~~~~~~d--w~fwl~~i~~ml~s~n~~~~~r~l~fLyn~--w~~ 80 (126)
T PF08578_consen 5 ILKAIAKKTSIYDSNAVFLLLDLLEEFIFQFDSYNPSLPDFFD--WDFWLDGIRMMLESDNVQSEIRALSFLYNI--WDL 80 (126)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHhhcccCCcccC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--HHH
Confidence 333444444555555556666666766654332 1221 133566677788899999999999544331 122
Q ss_pred H-hhccccc---hhhchH-HHHHHhhccccHHHHHHHHHH
Q 011191 402 I-AQNRNVI---LPIIFE-ALEKNIQSHWNQAVHGLTVNV 436 (491)
Q Consensus 402 i-~~n~~~i---~Pii~p-~L~~~s~~HWn~~Vr~la~~v 436 (491)
+ .+.++.+ .-.++. .....-=.|||+.||..=...
T Consensus 81 ~~~~~~~~~~~~~~~Ll~~~~f~~lF~HW~~~VR~~f~~L 120 (126)
T PF08578_consen 81 FPSESRRKISLCLDWLLSEKWFFKLFLHWSPMVRSYFHRL 120 (126)
T ss_pred cChhHHHHHHHHHHHHcCchHHHHHHhcCCHHHHHHHHHH
Confidence 2 2223332 444444 344444679999999865443
No 38
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=28.43 E-value=6.2e+02 Score=25.40 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=38.7
Q ss_pred ccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHHHHh
Q 011191 321 DYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF-QVAERALFL 392 (491)
Q Consensus 321 Dp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErAL~~ 392 (491)
+|+-...+++.+..+|..-...|.- -.-+..+++..++++...++..+...+...+..++- -|...++..
T Consensus 141 ~~~~~~~i~~~l~~~~~~l~~~~~G--~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~ 211 (322)
T cd07920 141 PPEDLQFIIDAFKGNCVALSTHPYG--CRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLEL 211 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCccc--cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhc
Confidence 3445555666666655543332211 123566677777777777777676666666655443 355555444
No 39
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.17 E-value=5.2e+02 Score=28.59 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCC--CChHHHhccCCHHHHHHHhhhcC-CCChhHHHHHHHHHHHHhhccc----------CchHHHH
Q 011191 178 QLVYELLLRYVVSSD--TDTKIAKRYIDHSFVLKLLDLFD-SEDPREREYLKTILHRIYGKFM----------VHRPFIR 244 (491)
Q Consensus 178 qlVYeillrfv~s~~--~d~~~~k~~id~~Fi~~Ll~lfd-SeDprERd~LktiLhrIY~kf~----------~~R~fIr 244 (491)
..+-|+|+|+|.... ....+..=.-++.+|.+|++.|+ +.|+......-.+|..|..... +--+..|
T Consensus 33 ~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r 112 (475)
T PF04499_consen 33 PAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTR 112 (475)
T ss_pred cHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHH
Confidence 567899999997443 22233333346889999999998 4455555556666555554321 1123333
Q ss_pred ----HHHHHHHHHhhhcccCCcChHHHHHHHHHHHhc
Q 011191 245 ----KAINNIFYRFIYETERHSGIGELLEILGSIING 277 (491)
Q Consensus 245 ----k~i~n~f~~fi~e~e~h~GIaELLeIlgsIIng 277 (491)
..+-..+..++.+...-.++.-.+.|+-.+|+.
T Consensus 113 ~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 113 QLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred HHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 333344556665533355555556666666643
No 40
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=27.64 E-value=5e+02 Score=24.43 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCChhHHHhhH------HHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhh
Q 011191 347 FLGELEEVLEATQGAEFQRCM------VPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQ 404 (491)
Q Consensus 347 FL~ele~iLe~~~~~~f~~i~------~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~ 404 (491)
+=+-+.+++..++-+++..+. .+.|+.+-+.+.|+.||-.-.+ +|+|+.+..++..
T Consensus 103 ~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 103 LNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 445566666667777766543 4899999999999999877665 5899988777654
No 41
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=27.14 E-value=1.1e+02 Score=26.09 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=36.7
Q ss_pred HHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHH
Q 011191 318 VEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQ 364 (491)
Q Consensus 318 ~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~ 364 (491)
+...+-+...-|.++..-=+...+..+|.||.|+-+++..++.+-|.
T Consensus 15 L~eq~Wi~~~~i~~l~~~~~~~d~e~qI~Flrel~~l~r~~Pv~vF~ 61 (87)
T PF09059_consen 15 LVEQRWIGPSQIERLAEALGLPDIEQQILFLRELKELFRLMPVDVFN 61 (87)
T ss_dssp HHHSTT--HHHHHHHHHCT--SSHHHHHHHHHHHHHHHHTS-GGGSS
T ss_pred HhcCcCcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcHHhcC
Confidence 45677888888899998889999999999999999999999877774
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=26.75 E-value=1.1e+03 Score=27.75 Aligned_cols=136 Identities=8% Similarity=0.127 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCC-CcccchHhHHHHHHHHHHhccC
Q 011191 245 KAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPK-PVAMYHQQLSYCITQFVEKDYK 323 (491)
Q Consensus 245 k~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~-~~~~y~~qL~~ci~qf~~KDp~ 323 (491)
..+-+.+.+++..... =+.|.+.++..|++.+. -+ + .+.+.+-.++... .-+.=...+.+++.+|++.-+.
T Consensus 404 ~~cV~~Ll~ll~~~~~--~v~e~i~vik~IlrkyP--~~--~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~ 475 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE--LLPQVVTAAKDIVRKYP--EL--L--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN 475 (746)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHCc--cH--H--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh
Confidence 3344455666633222 25677777888877653 11 1 1122221111000 0011123456677888765443
Q ss_pred cHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHh-CCCcHHHHHHHHHhh
Q 011191 324 LADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCL-NSSHFQVAERALFLW 393 (491)
Q Consensus 324 La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl-~S~hfqVAErAL~~w 393 (491)
+..+++.++..|---++.=+...|.-...++-..+ .+.+..+..+++ .|. .+.+..|=.||.++|
T Consensus 476 -a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p-~~~~~~l~~vL~---~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 476 -GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDP-QGMEPQLNRVLE---TVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred -HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHH---HHHhcCCChhHHHHHHHHH
Confidence 67788778888877666556666666666665544 344554444443 443 478999999999999
No 43
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.63 E-value=5e+02 Score=23.80 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCC-CcHHHHHHHHHh
Q 011191 315 TQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCM-VPLFRQIARCLNS-SHFQVAERALFL 392 (491)
Q Consensus 315 ~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S-~hfqVAErAL~~ 392 (491)
.-.+..++.-+..+++.|.|-==..|+.-+..-|..++.++..|...--+.+. ..+...|.+.++. .|..|-++++.+
T Consensus 25 cD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~l 104 (144)
T cd03568 25 CDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREV 104 (144)
T ss_pred HHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 33456667777777777776666689999999999999999999874444333 3455556666666 899999998876
Q ss_pred hcc
Q 011191 393 WNN 395 (491)
Q Consensus 393 w~N 395 (491)
...
T Consensus 105 i~~ 107 (144)
T cd03568 105 VKQ 107 (144)
T ss_pred HHH
Confidence 543
No 44
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=26.39 E-value=55 Score=27.80 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=34.5
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHH
Q 011191 206 FVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFI 243 (491)
Q Consensus 206 Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fI 243 (491)
=+.+|+++..|--....++...+|+.+|+-|..+||++
T Consensus 47 kmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 47 KVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 36679999999999999999999999999999999974
No 45
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=26.27 E-value=1.6e+02 Score=26.34 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=40.5
Q ss_pred chHhHHHHHHHHHHhccCcHHHHH---------------HHhhhhCCCCCChhHhHHHHHHHHHHH
Q 011191 306 YHQQLSYCITQFVEKDYKLADTVI---------------RGLLKYWPLTNCQKEVLFLGELEEVLE 356 (491)
Q Consensus 306 y~~qL~~ci~qf~~KDp~La~~vi---------------~~llk~WP~tns~KevlFL~ele~iLe 356 (491)
+..+++.-+..+|+++|.|...+= .-|-+.|-+--+..|+.||.|...++-
T Consensus 39 vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~~LiK 104 (113)
T PF12290_consen 39 VEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAFIEEFIGLIK 104 (113)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567888888899999999876332 446678999999999999988877654
No 46
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.81 E-value=6.7e+02 Score=28.54 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCCchHHHH----HHHHHHHhccCCCCCcccchHhHHHHHHH--HHHhccCcHHHHHHHhhhhCCCC
Q 011191 266 ELLEILGSIINGFALPMKEEHK----LFLVRALLPLHKPKPVAMYHQQLSYCITQ--FVEKDYKLADTVIRGLLKYWPLT 339 (491)
Q Consensus 266 ELLeIlgsIIngfa~PLKeehk----~fl~~vLlPLhk~~~~~~y~~qL~~ci~q--f~~KDp~La~~vi~~llk~WP~t 339 (491)
-|.+++-+|...|..-+.+||. .+..+.++-+-|.+..+.-.. ...+.. .-+|+..+...|+-|+-|-.|..
T Consensus 306 ~lv~vyf~~f~kfl~n~~ke~~~~s~~leek~~~~~~Knk~s~K~~k--~e~~rkev~~eknS~~~savLtG~nRa~pfa 383 (821)
T COG5593 306 KLVKVYFSIFRKFLENIPKEHRVNSNILEEKLVIGLGKNKGSEKICK--TEIIRKEVHTEKNSFYGSAVLTGCNRAGPFA 383 (821)
T ss_pred HHHHHHHHHHHHHHhcCchhhcccchhHHHHHHhhhccCCCCccccc--HHHHHHHHHHhhhhHHHHHHHhcccccCchh
Confidence 3567889999987777777776 677788899988887765422 111222 23788899999999999998864
Q ss_pred CChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHH
Q 011191 340 NCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLI 402 (491)
Q Consensus 340 ns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li 402 (491)
- +..+.|..-|..+|++.- +.+|-+.+.||++.+.+....++
T Consensus 384 ~-----------------l~~~~~~~Hm~tlfkith----~~~fnts~qalmli~q~~~~~~l 425 (821)
T COG5593 384 L-----------------LFRNAVKSHMMTLFKITH----EFLFNTSEQALMLIDQEFYRFLL 425 (821)
T ss_pred h-----------------hhHHHHHHHHHHHHhhhh----hhhhhHHHHHHHHHHHHHHHHhh
Confidence 3 223445556666776554 55677888888877666544333
No 47
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=25.75 E-value=4.1e+02 Score=31.98 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=88.4
Q ss_pred HHHHhhhhCC-CCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHH---HHHHHHhhcchhHHHHHh
Q 011191 328 VIRGLLKYWP-LTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQV---AERALFLWNNEHIVSLIA 403 (491)
Q Consensus 328 vi~~llk~WP-~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqV---AErAL~~w~N~~i~~li~ 403 (491)
++-.++.+.- .+.++| -++|.-+..+|..++-....+-+..|+..|-+|++-+..-| +++.+....-+. -.++.
T Consensus 868 ivP~l~~~~~t~~~~~K-~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQK-HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCccch-hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccch
Confidence 3444455554 444455 45688888888888877777778889999999999988877 334443322221 13445
Q ss_pred hccccchhhchHHHHHHhhcccc--HHHHHHHHHHHHHHHHhC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011191 404 QNRNVILPIIFEALEKNIQSHWN--QAVHGLTVNVRKMFLDMD---------AELFEECQNQYEEKESRAKEVEEQRELT 472 (491)
Q Consensus 404 ~n~~~i~Pii~p~L~~~s~~HWn--~~Vr~la~~vlk~l~e~D---------~~lf~~c~~~~~~~~~~~~~~~~~r~~~ 472 (491)
.+-.+++| .+...++.|=| ..||..|.+.|.+|-+.= |++-.....-..++++.-.++....+..
T Consensus 946 ~~~~Tlvp----~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 946 EHLSTLVP----YLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHhHHHH----HHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 55555544 45556666655 899999999999999822 2222222222233344444445556778
Q ss_pred HHHH
Q 011191 473 WKRL 476 (491)
Q Consensus 473 W~~l 476 (491)
|..|
T Consensus 1022 W~~l 1025 (1030)
T KOG1967|consen 1022 WYML 1025 (1030)
T ss_pred hhhc
Confidence 8765
No 48
>KOG4553 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.58 E-value=8.6e+02 Score=29.98 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=74.2
Q ss_pred CCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhH--------------HH---HHHHHHHHHh
Q 011191 171 EPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPRE--------------RE---YLKTILHRIY 233 (491)
Q Consensus 171 e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprE--------------Rd---~LktiLhrIY 233 (491)
|.-|.| .||-..++|.|.+.. .-+.+.+.+.+.....+++|=|+.- |- ...-++.+|-
T Consensus 356 e~~~~~-~iv~~~ilrvVkn~~----~er~hv~~sl~~~gf~ll~S~~l~~Vl~g~~~q~~dskgrv~~g~~~kL~~~il 430 (1398)
T KOG4553|consen 356 ECLWMS-DIVCGRILRVVKNQL----SERLHVNESLRRIGFRLLISLMLLLVLPGYQKQVVDSKGRVADGCTLKLLSRIL 430 (1398)
T ss_pred HHHHHH-HHHHHHHHHHHHhhh----hhhhhcchHHHHHhhHHHHhhhhhhcccchhhcccccccccCcchHHHHHHHHH
Confidence 456766 899999999987653 2345677777666666666633311 11 1222333333
Q ss_pred hcccCchHHHHHH-HHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHHHHh
Q 011191 234 GKFMVHRPFIRKA-INNIFYRFIYETERHSGIGELLEILGSIINGFAL-----------------PMKEEHKLFLVRALL 295 (491)
Q Consensus 234 ~kf~~~R~fIrk~-i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~-----------------PLKeehk~fl~~vLl 295 (491)
+--......+|.. +..++.|++.. ..-..+..+++.++-++.-.++ -+.-+...+|.++++
T Consensus 431 l~~fk~Hdm~r~eileq~~kRi~s~-~~~S~~~i~idll~~lv~~~sL~~l~~s~~v~Elfdy~~fm~g~is~rLi~avi 509 (1398)
T KOG4553|consen 431 LIIFKQHDMDRGEILEQLFKRIASS-SNNSSALILIDLLRELVRKCSLEILNNSKLVDELFDYVCFMRGDISVRLIRAVI 509 (1398)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhh-ccccchHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3222122222222 22346666643 2222344455555555533222 122345567899999
Q ss_pred ccCCCCCcccchHhHHHHHHHHHHhc
Q 011191 296 PLHKPKPVAMYHQQLSYCITQFVEKD 321 (491)
Q Consensus 296 PLhk~~~~~~y~~qL~~ci~qf~~KD 321 (491)
||+|. ..+|-.|...-+.|+
T Consensus 510 PLiK~------S~~lRDalIlVLrKA 529 (1398)
T KOG4553|consen 510 PLIKT------SPQLRDALILVLRKA 529 (1398)
T ss_pred HHHhc------CHHHHHHHHHHHHHH
Confidence 99997 466766665555443
No 49
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=24.51 E-value=4.1e+02 Score=23.87 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=54.0
Q ss_pred HHHHHHHhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc------chhHHHHHhhccccchhhchHHHHH---
Q 011191 350 ELEEVLEAT-QGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN------NEHIVSLIAQNRNVILPIIFEALEK--- 419 (491)
Q Consensus 350 ele~iLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~i~Pii~p~L~~--- 419 (491)
.+.+|...+ +.++|..+|.-|.+||+.. ..+...+-.||.+.. .+.++.-+.++.. ++..|..
T Consensus 21 ~m~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~-----~i~~L~~F~~ 93 (123)
T cd03571 21 LMAEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLY-----IIRTLKDFQY 93 (123)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHH-----HHHhhcccee
Confidence 345555544 5678999999999998865 567778888886653 2333333333332 2222211
Q ss_pred H-hh-ccccHHHHHHHHHHHHHHHH
Q 011191 420 N-IQ-SHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 420 ~-s~-~HWn~~Vr~la~~vlk~l~e 442 (491)
. .+ .-|-..||..|.+++.++.|
T Consensus 94 ~d~~g~d~G~~VR~ka~~i~~Ll~D 118 (123)
T cd03571 94 IDENGKDQGINVREKAKEILELLED 118 (123)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhCC
Confidence 1 12 25899999999999999954
No 50
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=23.05 E-value=4.8e+02 Score=22.29 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred HHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccc---hhhchHHHHHHhhccccHHHHHHHHHHHHH
Q 011191 363 FQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVI---LPIIFEALEKNIQSHWNQAVHGLTVNVRKM 439 (491)
Q Consensus 363 f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i---~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~ 439 (491)
..+....|.+-+-.|++.++..|=..|+.-.-| +.+..+..+ ++-||++|.+.+.. =++.||+.|..+-+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~n-----i~k~~~~~~l~~f~~IF~~L~kl~~D-~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYN-----ISKVARGEILPYFNEIFDALCKLSAD-PDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 444444555555689999999998888754433 233333344 45578888875433 366788877655554
Q ss_pred H
Q 011191 440 F 440 (491)
Q Consensus 440 l 440 (491)
|
T Consensus 95 l 95 (97)
T PF12755_consen 95 L 95 (97)
T ss_pred h
Confidence 4
No 51
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=22.28 E-value=5.3e+02 Score=31.53 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchh-----hchHHHHHHhhccccHHHHHHHHHHHHHHHHhCH-HHH
Q 011191 375 ARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILP-----IIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDA-ELF 448 (491)
Q Consensus 375 a~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~P-----ii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~-~lf 448 (491)
++.+.+.--.++..++.. ++++-.+.+.+|.-..++ .++|++..|.-.|.+ -.+|..+-+.+.+++. +-.
T Consensus 808 ik~~~ki~~k~Vnkqle~-~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fc---ekla~kv~~~Le~~e~Ee~k 883 (1330)
T KOG0949|consen 808 IKYVYKLQTKEVNKQLES-VVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFC---EKLALKVHRQLESMEMEEKK 883 (1330)
T ss_pred HHHHHHhhhhhhhhHhhh-cccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence 333333333445566766 777777777777222222 125555555555554 3455555555555554 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011191 449 EECQNQYEEKESRAKEVEEQRELTWKRLADVAEQ 482 (491)
Q Consensus 449 ~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~~ 482 (491)
++|..+++. +++...+.++.++.|.+=+.+|.+
T Consensus 884 ~k~m~k~kk-~~~~a~~r~Kt~e~~~k~~~~~ek 916 (1330)
T KOG0949|consen 884 DKLMEKMKK-EAKRARDREKTKESWIKESIAAEK 916 (1330)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhh
Confidence 677666554 344555556668888876666644
No 52
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=6.5e+02 Score=27.05 Aligned_cols=107 Identities=15% Similarity=0.270 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhCChhHHHhhH----HHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchhh-chHHH-H
Q 011191 345 VLFLGELEEVLEATQGAEFQRCM----VPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPI-IFEAL-E 418 (491)
Q Consensus 345 vlFL~ele~iLe~~~~~~f~~i~----~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~Pi-i~p~L-~ 418 (491)
++-+..+..|+|.++......+. .-++++|-.|+-.++-.||..|..-...- .++-..-..|+|. +...+ .
T Consensus 100 iLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri---alfpaaleaiFeSellDdlhl 176 (524)
T KOG4413|consen 100 ILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI---ALFPAALEAIFESELLDDLHL 176 (524)
T ss_pred hhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH---HhcHHHHHHhcccccCChHHH
Confidence 55678888999988865555444 37999999999999999999998655442 2222333334332 11111 2
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 011191 419 KNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQ 454 (491)
Q Consensus 419 ~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~ 454 (491)
+|..---|.-+|-..+..+--+..+.|..-++|...
T Consensus 177 rnlaakcndiaRvRVleLIieifSiSpesaneckkS 212 (524)
T KOG4413|consen 177 RNLAAKCNDIARVRVLELIIEIFSISPESANECKKS 212 (524)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhh
Confidence 233333466666666666666677888888888653
No 53
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.79 E-value=6.2e+02 Score=23.09 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhC-CCcHHHHHHHHHh
Q 011191 315 TQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCM-VPLFRQIARCLN-SSHFQVAERALFL 392 (491)
Q Consensus 315 ~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~-S~hfqVAErAL~~ 392 (491)
...+..++.-+...++.|.|-==..|+.-+..-|..++.++..|...-...+. ..+...+.+.++ ..|.+|-++++.+
T Consensus 29 cD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~l 108 (142)
T cd03569 29 CDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILEL 108 (142)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 34456667777778877777766689899999999999999988764433332 234444455554 6899999998866
Q ss_pred hc
Q 011191 393 WN 394 (491)
Q Consensus 393 w~ 394 (491)
..
T Consensus 109 i~ 110 (142)
T cd03569 109 IQ 110 (142)
T ss_pred HH
Confidence 43
No 54
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=21.72 E-value=2.6e+02 Score=26.60 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHH-HHHHHHHH
Q 011191 177 LQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPRER-EYLKTILH 230 (491)
Q Consensus 177 LqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprER-d~LktiLh 230 (491)
...|-.+|-+|+..-+ + ..|+.++...+++....+|+.|| ..++.++.
T Consensus 72 ~~~va~lLK~fLReLP-e-----pLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 120 (188)
T cd04383 72 INSVAGVLKLYFRGLE-N-----PLFPKERFEDLMSCVKLENPTERVHQIREILS 120 (188)
T ss_pred HHHHHHHHHHHHHhCC-C-----ccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3467888888876543 2 47888888889998888898886 44555543
No 55
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=1.3e+03 Score=26.67 Aligned_cols=198 Identities=23% Similarity=0.252 Sum_probs=88.6
Q ss_pred hhhcCCCCh---hHHHHHHHHHH-----HHhhccc-CchHHHHHHHHHHHHHhhhcccCCcC----hHHH------HHHH
Q 011191 211 LDLFDSEDP---REREYLKTILH-----RIYGKFM-VHRPFIRKAINNIFYRFIYETERHSG----IGEL------LEIL 271 (491)
Q Consensus 211 l~lfdSeDp---rERd~LktiLh-----rIY~kf~-~~R~fIrk~i~n~f~~fi~e~e~h~G----IaEL------LeIl 271 (491)
+.+++-.|+ .|+-.+|.+|. |+..+.| ..++-.+.-.+-+|..-+++--.|.+ +.-| +|-+
T Consensus 321 ~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v 400 (650)
T KOG2188|consen 321 FQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDV 400 (650)
T ss_pred hhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHH
Confidence 345667777 99999999887 4444443 33333333333344443444322222 1111 3345
Q ss_pred HHHHhcCCCCchHH---HHHHHHHHHhccCCCCCcccchHhHHH-HHHHHH---HhccCcHHHHHHHhhhh------CCC
Q 011191 272 GSIINGFALPMKEE---HKLFLVRALLPLHKPKPVAMYHQQLSY-CITQFV---EKDYKLADTVIRGLLKY------WPL 338 (491)
Q Consensus 272 gsIIngfa~PLKee---hk~fl~~vLlPLhk~~~~~~y~~qL~~-ci~qf~---~KDp~La~~vi~~llk~------WP~ 338 (491)
++||--.+.-++.= .......+| +-.++.++.|..++.. .+..|. +++-.... ++-..+.+ |+-
T Consensus 401 ~~v~eeL~P~~~~LL~~g~~gVv~sL--ia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~-~lL~~~~~~g~~~~~~~ 477 (650)
T KOG2188|consen 401 GSVIEELAPKLSSLLEQGNSGVVASL--IAASARLGSYQDKMLQQLIQAFHAASESKKNILP-CLLFSLTLFGCVGEWFL 477 (650)
T ss_pred HHHHHHHhHHHHHHHHcCCchHhHHH--HHHHHhhchhHHHHHHHHHHHHhcCChhhcchHH-HHHHHhhhccccccccc
Confidence 55554432211110 000111111 2345566677777665 444444 23333333 22222222 444
Q ss_pred CCCh--hHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhc--cccchhhch
Q 011191 339 TNCQ--KEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQN--RNVILPIIF 414 (491)
Q Consensus 339 tns~--KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~i~Pii~ 414 (491)
|.-- +-.+++.|+-. +-.+--+.+..|+-|.- +|+-+.+.++.....+|... ++.+=+++-
T Consensus 478 t~~~h~~ga~lle~lv~------------f~k~~i~~litsll~L~---~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~ 542 (650)
T KOG2188|consen 478 TEKFHQKGAVLLEELVN------------FSKTHIQTLITSLLSLS---EEQILEMSCNGVGSHLIEAVLASKDLGEKIK 542 (650)
T ss_pred HHHHhhchhHHHHHHHh------------hchhhhHHHHHHHHhhh---HHHHHHHhcCCchHHHHHHHHHhccccHHHH
Confidence 4332 22344433322 11122222444444432 56666677776544444322 122334555
Q ss_pred HHHHHHhhcccc
Q 011191 415 EALEKNIQSHWN 426 (491)
Q Consensus 415 p~L~~~s~~HWn 426 (491)
+-|.....+||-
T Consensus 543 ~kLi~~l~g~~~ 554 (650)
T KOG2188|consen 543 EKLINILDGSFV 554 (650)
T ss_pred HHHHHHhhccch
Confidence 666666677774
No 56
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=21.28 E-value=8.4e+02 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=12.3
Q ss_pred CCHHHHHHHhhhcCCCChhHHHHHH
Q 011191 202 IDHSFVLKLLDLFDSEDPREREYLK 226 (491)
Q Consensus 202 id~~Fi~~Ll~lfdSeDprERd~Lk 226 (491)
.-..++.++++... +.+|+.+.
T Consensus 92 ~g~~vlqkll~~~~---~~~~~~i~ 113 (322)
T cd07920 92 YGCRVIQKLLESIS---EEQISLLV 113 (322)
T ss_pred hhHHHHHHHHHhcC---HHHHHHHH
Confidence 44455677777665 44554433
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=20.99 E-value=2.3e+02 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=33.5
Q ss_pred hHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcc
Q 011191 195 TKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKF 236 (491)
Q Consensus 195 ~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf 236 (491)
+...+.+++...+..|+.++++.|++=|...-..|.++-...
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 555566666688889999999999999998888888886544
No 58
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.57 E-value=3.8e+02 Score=25.37 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhh----ccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011191 366 CMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQ----NRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFL 441 (491)
Q Consensus 366 i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~----n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~ 441 (491)
++-.-.+.|-+|.-|++.+|+..|+.+.. ++.+ |+...+|. |.- ..+-=|+.|++.|...++.+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~------~il~qGLvnP~~cvp~----lIA-L~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLE------LILRQGLVNPKQCVPT----LIA-LETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HHHhcCCCChHHHHhH----hhh-hhCCCChHHHHHHHHHHHHHH
Confidence 34456677778889999999999997643 3322 45555554 332 233358999999999999999
Q ss_pred HhCHHHHHHHH
Q 011191 442 DMDAELFEECQ 452 (491)
Q Consensus 442 e~D~~lf~~c~ 452 (491)
+--+.+++...
T Consensus 74 eK~~s~v~~~~ 84 (187)
T PF12830_consen 74 EKHESLVESRY 84 (187)
T ss_pred HHhHHHHHHHH
Confidence 98888887543
No 59
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=20.35 E-value=4.7e+02 Score=21.22 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhcchhH-----HHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHH
Q 011191 369 PLFRQIARCLNSSHFQVAERALFLWNNEHI-----VSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMF 440 (491)
Q Consensus 369 ~lF~~ia~cl~S~hfqVAErAL~~w~N~~i-----~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l 440 (491)
.++..+..++++++..|.+.|+..+.|=-. ...+ ....++|.+...+.. . +..++..+..++.-+
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~g~l~~l~~~l~~----~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV--LEAGGVPKLVNLLDS----S-NEDIQKNATGALSNL 118 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH--HHCCChHHHHHHHhc----C-CHHHHHHHHHHHHHh
Confidence 677777888889999999998877665311 0011 112234444443332 2 567777777776654
Done!