Query 011191
Match_columns 491
No_of_seqs 185 out of 318
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npp_B PP2A, B subunit, serine 100.0 8E-139 3E-143 1098.9 29.1 420 66-487 24-444 (449)
2 3fga_B Serine/threonine-protei 100.0 4E-137 1E-141 1071.7 37.2 401 76-478 1-402 (403)
3 2jak_A Serine/threonine-protei 100.0 3E-123 1E-127 964.2 35.5 356 66-423 36-392 (392)
4 1ibr_B P95, importin beta-1 su 95.1 0.74 2.5E-05 46.1 17.1 221 207-445 3-249 (462)
5 1qgr_A Protein (importin beta 94.4 5 0.00017 43.7 22.9 233 206-443 218-480 (876)
6 2bpt_A Importin beta-1 subunit 93.8 7.4 0.00025 42.3 22.6 263 175-442 175-482 (861)
7 2qk2_A LP04448P; mini spindles 93.7 1.8 6.1E-05 40.3 15.2 179 210-393 20-200 (242)
8 2qk1_A Protein STU2; STU2P, XM 93.5 2.4 8.3E-05 40.5 16.1 182 211-394 22-216 (249)
9 4fdd_A Transportin-1; heat rep 93.0 1.9 6.4E-05 47.8 16.4 226 207-449 15-251 (852)
10 2bpt_A Importin beta-1 subunit 92.2 3 0.0001 45.4 16.5 92 346-441 575-667 (861)
11 1qgr_A Protein (importin beta 90.3 23 0.00079 38.5 24.2 92 348-441 585-678 (876)
12 2jdq_A Importin alpha-1 subuni 89.6 9.9 0.00034 37.7 16.2 233 197-442 99-347 (450)
13 2km4_A Regulator of TY1 transp 88.9 1.5 5E-05 38.9 8.3 90 309-398 20-118 (142)
14 2x19_B Importin-13; nuclear tr 88.3 18 0.0006 40.4 18.7 205 208-453 689-905 (963)
15 4fdd_A Transportin-1; heat rep 84.0 55 0.0019 35.9 22.9 155 327-485 629-788 (852)
16 4fu3_A Regulation of nuclear P 83.8 2.4 8.2E-05 36.7 6.9 89 308-396 20-114 (135)
17 1wa5_B Importin alpha subunit; 82.0 29 0.00099 35.8 15.6 229 199-442 167-412 (530)
18 4b8j_A Importin subunit alpha- 81.8 36 0.0012 34.9 16.2 235 195-443 150-401 (528)
19 1u6g_C TIP120 protein, CAND1; 81.1 39 0.0013 38.9 17.6 100 342-443 492-599 (1230)
20 1ibr_B P95, importin beta-1 su 78.3 54 0.0018 32.2 18.7 241 175-419 168-458 (462)
21 1u6g_C TIP120 protein, CAND1; 78.3 38 0.0013 39.0 16.3 179 206-392 7-198 (1230)
22 1sz9_A PCF11 protein; RNA poly 72.0 10 0.00035 33.6 7.4 90 307-396 23-115 (144)
23 2qk1_A Protein STU2; STU2P, XM 71.9 27 0.00091 33.0 10.9 87 350-442 127-220 (249)
24 1wa5_B Importin alpha subunit; 71.4 79 0.0027 32.4 15.3 223 207-446 89-332 (530)
25 2jdq_A Importin alpha-1 subuni 70.0 67 0.0023 31.5 13.9 70 369-445 192-266 (450)
26 2vgl_B AP-2 complex subunit be 69.0 66 0.0023 34.1 14.3 175 205-394 353-528 (591)
27 4db6_A Armadillo repeat protei 67.4 64 0.0022 28.2 12.9 182 202-395 9-206 (210)
28 3tjz_B Coatomer subunit gamma; 67.3 1.1E+02 0.0038 30.9 16.6 159 260-456 59-219 (355)
29 4b8j_A Importin subunit alpha- 67.2 1.1E+02 0.0039 31.1 16.5 225 207-445 76-318 (528)
30 4hxt_A De novo protein OR329; 67.1 49 0.0017 29.5 11.2 192 196-395 35-238 (252)
31 4flb_A Regulation of nuclear P 60.8 23 0.00079 30.2 7.3 85 308-395 21-112 (132)
32 2of3_A ZYG-9; multifunctional 57.4 87 0.003 30.4 11.5 104 348-455 67-176 (266)
33 1w63_A Adapter-related protein 55.8 1.8E+02 0.0063 30.9 14.9 27 369-395 548-574 (618)
34 3m1i_C Exportin-1; heat repeat 55.1 1.4E+02 0.0047 33.9 14.4 220 202-443 13-264 (1049)
35 1w63_A Adapter-related protein 53.2 2.3E+02 0.0079 30.1 18.1 158 266-448 404-582 (618)
36 4hxt_A De novo protein OR329; 51.0 1.3E+02 0.0045 26.6 17.8 223 207-444 4-243 (252)
37 4db8_A Armadillo-repeat protei 50.8 1.4E+02 0.0047 26.7 12.7 35 200-234 49-83 (252)
38 3ul1_B Importin subunit alpha- 48.9 2.2E+02 0.0075 29.2 13.8 109 194-302 132-245 (510)
39 1xqr_A HSPBP1 protein; armadil 47.3 2.1E+02 0.007 27.7 15.8 63 176-242 56-119 (296)
40 2x1g_F Cadmus; transport prote 47.3 2.4E+02 0.0083 31.3 14.7 51 345-395 803-855 (971)
41 2vgl_B AP-2 complex subunit be 45.1 2.9E+02 0.01 28.9 16.0 72 177-256 66-150 (591)
42 2iw3_A Elongation factor 3A; a 41.6 2.9E+02 0.0099 31.9 14.1 75 364-443 249-325 (986)
43 2vgl_A Adaptor protein complex 40.1 3.4E+02 0.012 29.0 13.9 83 307-394 493-585 (621)
44 3ibv_A Exportin-T; karyopherin 39.2 53 0.0018 37.6 7.7 161 268-441 64-259 (980)
45 3gjx_A Exportin-1; transport, 37.3 3.6E+02 0.012 31.2 14.2 32 202-233 25-56 (1073)
46 3u0r_A Apoptosis inhibitor 5; 37.2 4.1E+02 0.014 28.3 15.1 57 324-380 261-323 (507)
47 3opb_A SWI5-dependent HO expre 35.5 4.9E+02 0.017 29.1 14.4 139 216-359 67-244 (778)
48 3ibv_A Exportin-T; karyopherin 34.4 49 0.0017 37.9 6.3 82 207-298 704-786 (980)
49 1b3u_A Protein (protein phosph 33.6 3.8E+02 0.013 26.9 16.5 169 210-393 131-305 (588)
50 3d9j_A RNA-binding protein 16; 33.1 83 0.0028 27.5 6.4 87 308-395 23-119 (145)
51 3m1i_C Exportin-1; heat repeat 33.0 5.3E+02 0.018 29.0 14.7 88 306-394 727-829 (1049)
52 1eyh_A Epsin; superhelix of he 32.0 1E+02 0.0035 27.2 6.7 105 329-442 10-122 (144)
53 3onk_A Epsin-3, ENT3; helix, p 28.9 1.2E+02 0.0039 27.1 6.6 87 350-442 31-129 (150)
54 1wa5_C Importin alpha RE-expor 28.6 6.4E+02 0.022 28.0 22.8 33 204-236 122-154 (960)
55 1oks_A RNA polymerase alpha su 28.5 44 0.0015 24.8 3.0 46 269-316 5-50 (56)
56 3bbz_A P protein, phosphoprote 27.8 57 0.002 23.9 3.5 31 75-114 15-45 (49)
57 2x1g_F Cadmus; transport prote 24.1 7.5E+02 0.026 27.2 19.6 215 173-393 540-809 (971)
58 3gs3_A Symplekin, LD45768P; he 23.3 2.9E+02 0.01 26.4 8.8 73 315-394 41-115 (257)
59 1xl3_C Protein type A, secreti 22.0 99 0.0034 25.5 4.3 46 320-365 17-62 (92)
60 3tpo_A Importin subunit alpha- 20.6 6.9E+02 0.023 25.5 18.9 195 194-394 151-360 (529)
61 1x5b_A Signal transducing adap 20.3 4.5E+02 0.015 23.2 9.6 77 314-393 39-120 (163)
No 1
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=7.6e-139 Score=1098.85 Aligned_cols=420 Identities=53% Similarity=0.963 Sum_probs=382.4
Q ss_pred cCCCCCCCCCChHHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhh
Q 011191 66 IEPLPLFRDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINI 144 (491)
Q Consensus 66 ~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~Ni 144 (491)
+++||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++.+||++|+++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHH
Q 011191 145 FRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREY 224 (491)
Q Consensus 145 FR~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~ 224 (491)
||++||.+++++ ..||+|||||+.||+|||||+||++|+|||+|+++|+++||+|||++||++|+++||||||||||+
T Consensus 104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 181 (449)
T 2npp_B 104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181 (449)
T ss_dssp CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999887754 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcc
Q 011191 225 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVA 304 (491)
Q Consensus 225 LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~ 304 (491)
||++||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.|||||||++++++
T Consensus 182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~ 261 (449)
T 2npp_B 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261 (449)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHH
Q 011191 305 MYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQ 384 (491)
Q Consensus 305 ~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfq 384 (491)
.||+||+||++||++|||+|+..|++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+|||
T Consensus 262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 011191 385 VAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKE 464 (491)
Q Consensus 385 VAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~ 464 (491)
||||||++|+|++|++++++|++.|+|+|+|+|++++++|||++||++|++|+++|+|||+++|++|+++|+++++++++
T Consensus 342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~ 421 (449)
T 2npp_B 342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421 (449)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 011191 465 VEEQRELTWKRLADVAEQRRGED 487 (491)
Q Consensus 465 ~~~~r~~~W~~l~~~A~~~~~~~ 487 (491)
.+++|+++|++|+++|++++...
T Consensus 422 ~~~~r~~~W~~i~~~A~~~~~~~ 444 (449)
T 2npp_B 422 KMKEREEAWVKIENLAKANPQVL 444 (449)
T ss_dssp TSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999988643
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=3.5e-137 Score=1071.73 Aligned_cols=401 Identities=54% Similarity=1.004 Sum_probs=395.1
Q ss_pred ChHHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhcccCCCCCCC
Q 011191 76 PVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHE 154 (491)
Q Consensus 76 ~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~NiFR~lPp~~~~ 154 (491)
|++||++||++||++||++||| +||.+|+++|++||+||+||++|++++++.+||++|+++++||++||||++||.+++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6789999999999999999999 899999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhh
Q 011191 155 NTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYG 234 (491)
Q Consensus 155 ~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~ 234 (491)
++ ..||+|||||++||+|||||+||++|+||++|+++|+++||+|||++||++|+++||||||||||+|||+||||||
T Consensus 81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 54 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHH
Q 011191 235 KFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCI 314 (491)
Q Consensus 235 kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci 314 (491)
||+++|+|||++|||+||+||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||+
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q 011191 315 TQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN 394 (491)
Q Consensus 315 ~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~ 394 (491)
+||++|||+|+..|++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+|||||||||++|+
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011191 395 NEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWK 474 (491)
Q Consensus 395 N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~ 474 (491)
|++|+++|++|++.|+|+|+|+|++++++|||++|+++|++|+++|||||+++|++|+++|+++++++++++++|+++|+
T Consensus 319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011191 475 RLAD 478 (491)
Q Consensus 475 ~l~~ 478 (491)
+|++
T Consensus 399 ~~~~ 402 (403)
T 3fga_B 399 KIEN 402 (403)
T ss_dssp TCSC
T ss_pred HHhc
Confidence 9864
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.9e-123 Score=964.25 Aligned_cols=356 Identities=57% Similarity=1.008 Sum_probs=325.1
Q ss_pred cCCCCCCCCCChHHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhh
Q 011191 66 IEPLPLFRDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINI 144 (491)
Q Consensus 66 ~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~Ni 144 (491)
+++||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++++++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHH
Q 011191 145 FRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREY 224 (491)
Q Consensus 145 FR~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~ 224 (491)
||++||.+++++ ..||+|||||+.||+|||||+||++|+|||+|++++++++|+|||++||.+|+++|+||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999887654 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcc
Q 011191 225 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVA 304 (491)
Q Consensus 225 LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~ 304 (491)
||++||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.|+|||||++++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHH
Q 011191 305 MYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQ 384 (491)
Q Consensus 305 ~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfq 384 (491)
.||+||+||++||++|||+|++.|++||+||||+|||+|||+||+||++||+.+++++|+++++|+|++||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhc
Q 011191 385 VAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQS 423 (491)
Q Consensus 385 VAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~ 423 (491)
||||||++|+|++|+++|++|+++|+|+|||+|++++++
T Consensus 354 VAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 354 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 999999999999999999999999999999999999864
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.09 E-value=0.74 Score=46.07 Aligned_cols=221 Identities=10% Similarity=0.044 Sum_probs=124.5
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhc-ccC-------------chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGK-FMV-------------HRPFIRKAINNIFYRFIYETERHSGIGELLEILG 272 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~k-f~~-------------~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlg 272 (491)
+.++|..+.|+|+..|..-...|..+... ..+ ..+-+|....-.|-+++..... .+-.+..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~---- 77 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQ---- 77 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHH----
Confidence 45678888899999888877777664431 111 1223333333333333311000 0000000
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhc------cCcHHHHHHHhhhhCCCC--CChhH
Q 011191 273 SIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKD------YKLADTVIRGLLKYWPLT--NCQKE 344 (491)
Q Consensus 273 sIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KD------p~La~~vi~~llk~WP~t--ns~Ke 344 (491)
.. + ..+.++.+..+...|+++.....-.. .++..|+..+...+ |.+...++..+- -. +....
T Consensus 78 ~~---~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 78 QR---W-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp HH---H-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred hh---h-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 00 1 12567788888888999887765444 78999998887654 233444433332 22 33334
Q ss_pred hHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCC--cHHHHHHHHHhhcc--hhHHHHHhhccccchhhchHHHHHH
Q 011191 345 VLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSS--HFQVAERALFLWNN--EHIVSLIAQNRNVILPIIFEALEKN 420 (491)
Q Consensus 345 vlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~--hfqVAErAL~~w~N--~~i~~li~~n~~~i~Pii~p~L~~~ 420 (491)
..-+.-+..+.+...++.+......++..+..++.++ +..|-..|+..+.+ +.+...+.. ....+.+.+.|.+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHh
Confidence 4556777777776666667777788999999999998 77777777654433 111111110 00112344555543
Q ss_pred hhccccHHHHHHHHHHHHHHHHhCH
Q 011191 421 IQSHWNQAVHGLTVNVRKMFLDMDA 445 (491)
Q Consensus 421 s~~HWn~~Vr~la~~vlk~l~e~D~ 445 (491)
. .+=+..+|..+..++..+.+..+
T Consensus 226 ~-~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 226 T-QCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHCG
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 33356888888888877776544
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.42 E-value=5 Score=43.74 Aligned_cols=233 Identities=10% Similarity=0.089 Sum_probs=126.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCC-----
Q 011191 206 FVLKLLDLFDSEDPREREYLKTILHRIYGKFM-VHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFA----- 279 (491)
Q Consensus 206 Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~-~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa----- 279 (491)
++.-+...+.++|++.|...-.+|.++...+. ..++++.+.+-..+...+. .....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 45556677888999999888888887776544 2355555222223222221 1111123345666665553210
Q ss_pred ------------CCch---HHHHHHHHHHHhccCCCC------CcccchHhHHHHHHHHHHhcc-CcHHHHHHHhhhhCC
Q 011191 280 ------------LPMK---EEHKLFLVRALLPLHKPK------PVAMYHQQLSYCITQFVEKDY-KLADTVIRGLLKYWP 337 (491)
Q Consensus 280 ------------~PLK---eehk~fl~~vLlPLhk~~------~~~~y~~qL~~ci~qf~~KDp-~La~~vi~~llk~WP 337 (491)
.+.. ..|..-+...++.+.... .-......-..|+....+..+ .+...++..+....-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~ 376 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc
Confidence 0110 111111223334433211 001112223344444443322 345556665555443
Q ss_pred CCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhc--cccchhhchH
Q 011191 338 LTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQN--RNVILPIIFE 415 (491)
Q Consensus 338 ~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~i~Pii~p 415 (491)
-.+....-.-+.-+..+.+.+.++.+......+...+-.+++++|..|-.+|+..+.+ +...+... ....++.+++
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHCGGGTSSTTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhCchhcccHHHHHHHHH
Confidence 3444444444566677777777677777777888888999999999999888876654 33333221 2345677788
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHh
Q 011191 416 ALEKNIQSHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 416 ~L~~~s~~HWn~~Vr~la~~vlk~l~e~ 443 (491)
.|.+....+ ..|+..+..++..+.+.
T Consensus 455 ~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 455 CLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 888776653 67777777776666543
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.80 E-value=7.4 Score=42.32 Aligned_cols=263 Identities=13% Similarity=0.142 Sum_probs=140.1
Q ss_pred cchHHHHHHHHHHHhcCCCChHH-------Hhc---cCCH--------H-HHHHHhhhcCCCChhHHHHHHHHHHHHhhc
Q 011191 175 PHLQLVYELLLRYVVSSDTDTKI-------AKR---YIDH--------S-FVLKLLDLFDSEDPREREYLKTILHRIYGK 235 (491)
Q Consensus 175 pHLqlVYeillrfv~s~~~d~~~-------~k~---~id~--------~-Fi~~Ll~lfdSeDprERd~LktiLhrIY~k 235 (491)
+|..-+...|...+..++.++.+ ... +++. . ++..|...+.++|++.|...-.+|.++...
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46677777776666654323221 111 2221 2 345566678899999999888888888776
Q ss_pred ccC-chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCC-----------CC-----chHHHHHHHHHHHhccC
Q 011191 236 FMV-HRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFA-----------LP-----MKEEHKLFLVRALLPLH 298 (491)
Q Consensus 236 f~~-~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa-----------~P-----LKeehk~fl~~vLlPLh 298 (491)
+.. ..+++.+.+-..+...+.. ....-....+++++++..... .| .-..+...+..+++...
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 552 3455553333334333322 122223456777777664310 00 00111122333444444
Q ss_pred CCCCc------ccchHhHHHHHHHHHHhcc-CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHH
Q 011191 299 KPKPV------AMYHQQLSYCITQFVEKDY-KLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLF 371 (491)
Q Consensus 299 k~~~~------~~y~~qL~~ci~qf~~KDp-~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF 371 (491)
+...- ......-..|+..+....+ .....++..+...--..+....-.-+.-+..+.+.+.++.+...+..+.
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32110 0111222334444433322 3444555554443322333333334555677766666677778888889
Q ss_pred HHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhc--cccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 011191 372 RQIARCLNSSHFQVAERALFLWNNEHIVSLIAQN--RNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 372 ~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e 442 (491)
..+..++.++|..|-++|+..+.+ +...+... ....++-++|.|.+..... ..|+..+..++..+.+
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGR--IADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHH--HHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHH--HHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 999999999999999888654432 23333222 2345566777777665554 6778777777665544
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.67 E-value=1.8 Score=40.34 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=113.9
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHhhcccCc-hHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHH
Q 011191 210 LLDLFDSEDPREREYLKTILHRIYGKFMVH-RPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKL 288 (491)
Q Consensus 210 Ll~lfdSeDprERd~LktiLhrIY~kf~~~-R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~ 288 (491)
+++.++|.|.+||..--.-|..+....... ...+. .+-+.+...+-.+.+..-....+..++.+.++....+...+..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566778999999988777766665532110 11122 2233344434212333334567888888887765444443333
Q ss_pred HHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChh-HHHhhH
Q 011191 289 FLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGA-EFQRCM 367 (491)
Q Consensus 289 fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~-~f~~i~ 367 (491)
+...|+...+.+.-. -.+....++..+++.-+ ...++..++...--.|+.=...-+.-|..++....++ .+...+
T Consensus 99 -ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 99 -CVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp -HHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred -HHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 456666666655432 34566677777776433 3566677777766667766667788888888887665 456777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhh
Q 011191 368 VPLFRQIARCLNSSHFQVAERALFLW 393 (491)
Q Consensus 368 ~~lF~~ia~cl~S~hfqVAErAL~~w 393 (491)
..+...|..|+...+..|=+.|....
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 88889999999999998888776544
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.52 E-value=2.4 Score=40.46 Aligned_cols=182 Identities=8% Similarity=0.059 Sum_probs=120.8
Q ss_pred hhhcCCCChhHHHHHHHHHHH-HhhcccCch---HHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCC-CCchHH
Q 011191 211 LDLFDSEDPREREYLKTILHR-IYGKFMVHR---PFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFA-LPMKEE 285 (491)
Q Consensus 211 l~lfdSeDprERd~LktiLhr-IY~kf~~~R---~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa-~PLKee 285 (491)
.+.+.|.|.+||...-.-|.. +-..+...- .-.. .+-+.+...+-.+.+..-+...+..+|.+.+|+. ..+...
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 344578999999877777777 653322111 0001 1122233333223333345677999999999987 555423
Q ss_pred HHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhc-c----CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh
Q 011191 286 HKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKD-Y----KLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG 360 (491)
Q Consensus 286 hk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KD-p----~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~ 360 (491)
|..-+.-.++..++-+.- .-.....+++..+++.- | .-.+.++..|+..+-..|++=....+.-|..++.....
T Consensus 101 y~~~llp~ll~~l~dkk~-~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKP-SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 433445667777776653 23467788899998754 2 11346777777777666777777889999999987764
Q ss_pred --hHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q 011191 361 --AEFQRCM-VPLFRQIARCLNSSHFQVAERALFLWN 394 (491)
Q Consensus 361 --~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~ 394 (491)
..|.+.+ ..+...+.+|+...+-.|=+.|...+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7888888 899999999999999999888876543
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.00 E-value=1.9 Score=47.83 Aligned_cols=226 Identities=12% Similarity=0.092 Sum_probs=125.8
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHH-HHHHHHHHHhcCCCCchHH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGE-LLEILGSIINGFALPMKEE 285 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaE-LLeIlgsIIngfa~PLKee 285 (491)
+.+++....|+|+..|......|..++. .|-.-..+..++... +.....+-- ..-.|...|+..-.++.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 4556666678899999888888877653 111111111111100 111111100 0112333333322356788
Q ss_pred HHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhc-----cCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh
Q 011191 286 HKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKD-----YKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG 360 (491)
Q Consensus 286 hk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KD-----p~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~ 360 (491)
.+..+...|+++...+. ..-..++..|+......| |.+...++. .+-..+..-.-.-+.-+..+++..++
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~----~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCS----LLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHH----HHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999887543 345678888998888766 333333333 33233333233345556666665543
Q ss_pred hHHH-----hhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHH
Q 011191 361 AEFQ-----RCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVN 435 (491)
Q Consensus 361 ~~f~-----~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~ 435 (491)
. +. .....++..+.+++++++..|-..|+....+ ++....+.-...++-+++.|.+.... =+..||..+..
T Consensus 162 ~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d-~~~~vr~~a~~ 237 (852)
T 4fdd_A 162 I-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGD-EEPEVRKNVCR 237 (852)
T ss_dssp H-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTC-CCHHHHHHHHH
T ss_pred H-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 2 22 2245567777788999999998888765542 11111111122234456666664433 36789999999
Q ss_pred HHHHHHHhCHHHHH
Q 011191 436 VRKMFLDMDAELFE 449 (491)
Q Consensus 436 vlk~l~e~D~~lf~ 449 (491)
++..+.+..++.+.
T Consensus 238 ~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 238 ALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHCHHHHG
T ss_pred HHHHHHHhCHHHHH
Confidence 99999888776543
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.23 E-value=3 Score=45.41 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhcc
Q 011191 346 LFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF-QVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSH 424 (491)
Q Consensus 346 lFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~H 424 (491)
..+.-+..++..++. .+......++..+-..+++.+. .|-+.++..+.+ +.......-...+|.++|.|.+... +
T Consensus 575 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~-~ 650 (861)
T 2bpt_A 575 NILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA--LAASLGKGFEKYLETFSPYLLKALN-Q 650 (861)
T ss_dssp HHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH--HHHHHGGGGHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHhc-c
Confidence 455666666666654 5667777888888888888776 677777766542 2333333223334555665555432 2
Q ss_pred ccHHHHHHHHHHHHHHH
Q 011191 425 WNQAVHGLTVNVRKMFL 441 (491)
Q Consensus 425 Wn~~Vr~la~~vlk~l~ 441 (491)
=+..+|..+..++..+.
T Consensus 651 ~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 651 VDSPVSITAVGFIADIS 667 (861)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 23346666666555443
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.34 E-value=23 Score=38.46 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCc--HHHHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccc
Q 011191 348 LGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSH--FQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHW 425 (491)
Q Consensus 348 L~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~h--fqVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HW 425 (491)
+.-+..+...++.+.+...+..++..+..++.+.+ ..|-+.|+..+.+ +.......-...++.++|.|......+=
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 44555555556546778888888888888888774 2566667665443 1222222222334445666665544432
Q ss_pred cHHHHHHHHHHHHHHH
Q 011191 426 NQAVHGLTVNVRKMFL 441 (491)
Q Consensus 426 n~~Vr~la~~vlk~l~ 441 (491)
+..||..+..++..+.
T Consensus 663 ~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLC 678 (876)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5567777766655554
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=89.55 E-value=9.9 Score=37.73 Aligned_cols=233 Identities=12% Similarity=0.082 Sum_probs=115.1
Q ss_pred HHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHHH
Q 011191 197 IAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIR-KAINNIFYRFIYETERHSGIGELLEILGSII 275 (491)
Q Consensus 197 ~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIr-k~i~n~f~~fi~e~e~h~GIaELLeIlgsII 275 (491)
..+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ..+-..+.+++.......-....+..++.+.
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 334445556788999999999999999999998888775444444332 2233455555543222222345566777777
Q ss_pred hcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhc---------cCcHHHHHHHhhhhCCCCCChhHhH
Q 011191 276 NGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKD---------YKLADTVIRGLLKYWPLTNCQKEVL 346 (491)
Q Consensus 276 ngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KD---------p~La~~vi~~llk~WP~tns~Kevl 346 (491)
.+-....+.....-....|+.+.+...-. -......++..+...+ ..+.+.++..| + ..+..-...
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~~~v~~~ 253 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-M---HNDYKVVSP 253 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-T---CSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-C---CCchhHHHH
Confidence 55311111111111234455555443211 1112222333332222 23444444433 2 122221222
Q ss_pred HHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHHhhcc-----hhHHHHHhhccccchhhchHHHHHH
Q 011191 347 FLGELEEVLEATQGAEFQRCM-VPLFRQIARCLNSSHFQVAERALFLWNN-----EHIVSLIAQNRNVILPIIFEALEKN 420 (491)
Q Consensus 347 FL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~i~Pii~p~L~~~ 420 (491)
-+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+....| +.....+.+ ..++|.++..|..
T Consensus 254 a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~- 329 (450)
T 2jdq_A 254 ALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALISILQT- 329 (450)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHH-
T ss_pred HHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhc-
Confidence 23333333221 122112111 1466777888899999998888866543 211111111 2455555555442
Q ss_pred hhccccHHHHHHHHHHHHHHHH
Q 011191 421 IQSHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 421 s~~HWn~~Vr~la~~vlk~l~e 442 (491)
=+..||..|..++.-+..
T Consensus 330 ----~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 330 ----AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp ----SCHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHc
Confidence 256677777777665543
No 13
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=88.88 E-value=1.5 Score=38.90 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHhhhhCCCC--CChhHhHHHHHHHHHHHhCC-------hhHHHhhHHHHHHHHHHHhC
Q 011191 309 QLSYCITQFVEKDYKLADTVIRGLLKYWPLT--NCQKEVLFLGELEEVLEATQ-------GAEFQRCMVPLFRQIARCLN 379 (491)
Q Consensus 309 qL~~ci~qf~~KDp~La~~vi~~llk~WP~t--ns~KevlFL~ele~iLe~~~-------~~~f~~i~~~lF~~ia~cl~ 379 (491)
+-+.-+.+++-.+.+-+..++..+.++-=.. ++.|.+-+|..+.+|+..+. -..|.++++++|..+....+
T Consensus 20 ~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~ 99 (142)
T 2km4_A 20 ESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFP 99 (142)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344556677777777888887777777665 66999999999999997543 24678899999999988888
Q ss_pred CCcHHHHHHHHHhhcchhH
Q 011191 380 SSHFQVAERALFLWNNEHI 398 (491)
Q Consensus 380 S~hfqVAErAL~~w~N~~i 398 (491)
+.+-+..+|-+.+|....+
T Consensus 100 ~~~~~kv~rvl~iWeer~v 118 (142)
T 2km4_A 100 RDLKKKLSRVVNILKERNI 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhccCC
Confidence 8899999999999987544
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.29 E-value=18 Score=40.41 Aligned_cols=205 Identities=12% Similarity=0.135 Sum_probs=103.6
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHH
Q 011191 208 LKLLDLFDSEDPREREYLKTILHRIYGKFM-VHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEH 286 (491)
Q Consensus 208 ~~Ll~lfdSeDprERd~LktiLhrIY~kf~-~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeeh 286 (491)
.++++.+. .|++.++.+..+++++...+. ...+|+-..+..++-.| .. .+++.+|.+++.++..|...- ..
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~--~~---~~~~~~l~l~~~li~~f~~~~--~~ 760 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMY--ST---IPQASALDLTRQLVHIFAHEP--AH 760 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHH--HH---SCCHHHHHHHHHHHHHHTTCT--TT
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH--Hc---CCccHHHHHHHHHHHHhCCCc--ch
Confidence 34444433 566777777777777543322 22345444443333222 11 246789999999998554320 00
Q ss_pred HHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHH-Hh
Q 011191 287 KLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEF-QR 365 (491)
Q Consensus 287 k~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f-~~ 365 (491)
. +.+..+.+.+..|+...+.+|+.- .+.=..-|+..+..++..+...-+ ..
T Consensus 761 ~-------------~~~~~~l~~~~~~~l~~~~~~~~~---------------~pd~~~~~f~ll~~~~~~~~~~~~~~~ 812 (963)
T 2x19_B 761 F-------------PPIEALFLLVTSVTLTLFQQGPRD---------------HPDIVDSFMQLLAQALKRKPDLFLCER 812 (963)
T ss_dssp C-------------HHHHHHHHHHHHHHHHHHHHCTTT---------------CHHHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred H-------------HHHHHHHHHHHHHHHHHHhhCccc---------------CchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0 011122344444554444433221 111113345555555554443322 12
Q ss_pred h-HHHHHHHHHHHhCCCcHHHHHHHHHhhcc--------hhHHHHHhhccccchhhchHHHHH-HhhccccHHHHHHHHH
Q 011191 366 C-MVPLFRQIARCLNSSHFQVAERALFLWNN--------EHIVSLIAQNRNVILPIIFEALEK-NIQSHWNQAVHGLTVN 435 (491)
Q Consensus 366 i-~~~lF~~ia~cl~S~hfqVAErAL~~w~N--------~~i~~li~~n~~~i~Pii~p~L~~-~s~~HWn~~Vr~la~~ 435 (491)
. ...++..+..++..+|.-|+..|+.+|.+ +.+...+..+-..++..++..+.. ..+..|+ ....
T Consensus 813 ~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~~~ 887 (963)
T 2x19_B 813 LDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-----CFAD 887 (963)
T ss_dssp SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH-----HHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH-----HHHH
Confidence 2 56688888899999999999999988864 333333443333333333333331 1234453 2333
Q ss_pred HHHHHHHhCHHHHHHHHH
Q 011191 436 VRKMFLDMDAELFEECQN 453 (491)
Q Consensus 436 vlk~l~e~D~~lf~~c~~ 453 (491)
++..|...++..+.+.+.
T Consensus 888 il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 888 ILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp HHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHChHHHHHHHH
Confidence 444455556666665554
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=83.95 E-value=55 Score=35.95 Aligned_cols=155 Identities=8% Similarity=0.095 Sum_probs=96.8
Q ss_pred HHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhcc
Q 011191 327 TVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNR 406 (491)
Q Consensus 327 ~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~ 406 (491)
.++..++..|.-.++.=.-....-+.++...++ ++|...+..+...+.+.++...+.|...|... =-.+...+...-
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~a--lg~i~~~~~~~~ 705 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWA--IGEISIQMGIEM 705 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHH--HHHHHHHHGGGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHH--HHHHHHHhhHhH
Confidence 456677777765544444466777888877775 58888888899999999988888886655443 333444444444
Q ss_pred ccchhhchHHHHHHhhc-cccHHHHHHHHHHHHHHHHhCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011191 407 NVILPIIFEALEKNIQS-HWNQAVHGLTVNVRKMFLDMDAELF----EECQNQYEEKESRAKEVEEQRELTWKRLADVAE 481 (491)
Q Consensus 407 ~~i~Pii~p~L~~~s~~-HWn~~Vr~la~~vlk~l~e~D~~lf----~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~ 481 (491)
...++.+++.|.+..++ .-+.+++..+..++--|....|... .++...+-..-.. ....++++..-+-+-....
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~-~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN-IRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHH
Confidence 44455567777665443 5677888888888888888787654 3344433332211 1112234555555666665
Q ss_pred hcCC
Q 011191 482 QRRG 485 (491)
Q Consensus 482 ~~~~ 485 (491)
.++.
T Consensus 785 ~~p~ 788 (852)
T 4fdd_A 785 VNPS 788 (852)
T ss_dssp HCGG
T ss_pred hChH
Confidence 5553
No 16
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=83.85 E-value=2.4 Score=36.68 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=73.1
Q ss_pred HhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCC------hhHHHhhHHHHHHHHHHHhCCC
Q 011191 308 QQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQ------GAEFQRCMVPLFRQIARCLNSS 381 (491)
Q Consensus 308 ~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~------~~~f~~i~~~lF~~ia~cl~S~ 381 (491)
++-+.-+++++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+..+. -..|.+.+.++|..+.......
T Consensus 20 ~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~ 99 (135)
T 4fu3_A 20 QQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEG 99 (135)
T ss_dssp TTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3455566778777888888888888888888888999999999999997542 2457788999999999888888
Q ss_pred cHHHHHHHHHhhcch
Q 011191 382 HFQVAERALFLWNNE 396 (491)
Q Consensus 382 hfqVAErAL~~w~N~ 396 (491)
+-+...+-+.+|...
T Consensus 100 ~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 100 CKKPLERLLNIWQER 114 (135)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC
Confidence 888899999999863
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=82.03 E-value=29 Score=35.80 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=115.3
Q ss_pred hccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHH-HHHHHHHHhhhcccCCcChHHHHHHHHHHHhc
Q 011191 199 KRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRK-AINNIFYRFIYETERHSGIGELLEILGSIING 277 (491)
Q Consensus 199 k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk-~i~n~f~~fi~e~e~h~GIaELLeIlgsIIng 277 (491)
+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+.. .+-..+.+.+.. ....-....+..|+.+..+
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCC
Confidence 33344455778888888999999999999988887654334443322 223344555533 1112234456677777766
Q ss_pred CCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhcc---------CcHHHHHHHhhhhCCCCCChhHhHHH
Q 011191 278 FALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDY---------KLADTVIRGLLKYWPLTNCQKEVLFL 348 (491)
Q Consensus 278 fa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp---------~La~~vi~~llk~WP~tns~KevlFL 348 (491)
-..........-....|+.|.....- .-......++.......+ .+...++.. +++ .+..-...-+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~---~~~~v~~~a~ 320 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH---ESTLVQTPAL 320 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC---SCHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC---CChhhHHHHH
Confidence 42222223333345667777765432 112223344444443333 333333333 221 2211111222
Q ss_pred HHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHHhhcch------hHHHHHhhccccchhhchHHHHHHh
Q 011191 349 GELEEVLEATQGAEFQRCM-VPLFRQIARCLNSSHFQVAERALFLWNNE------HIVSLIAQNRNVILPIIFEALEKNI 421 (491)
Q Consensus 349 ~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N~------~i~~li~~n~~~i~Pii~p~L~~~s 421 (491)
.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+..+.|- .+..++ ...++|.++..|.
T Consensus 321 ~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~~l~~L~~lL~--- 393 (530)
T 1wa5_B 321 RAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVKLLE--- 393 (530)
T ss_dssp HHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHHHHH---
T ss_pred HHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHHHHHHh---
Confidence 233332211 122222222 24666778888999999988888665542 111112 1234555554443
Q ss_pred hccccHHHHHHHHHHHHHHHH
Q 011191 422 QSHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 422 ~~HWn~~Vr~la~~vlk~l~e 442 (491)
+-+..|+..|..++.-+..
T Consensus 394 --~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 394 --VAEYKTKKEACWAISNASS 412 (530)
T ss_dssp --HSCHHHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHh
Confidence 2356677767666655543
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=81.80 E-value=36 Score=34.92 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=114.5
Q ss_pred hHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHH-HHHHHHHHhhhcccCCcChHHHHHHHHH
Q 011191 195 TKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRK-AINNIFYRFIYETERHSGIGELLEILGS 273 (491)
Q Consensus 195 ~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk-~i~n~f~~fi~e~e~h~GIaELLeIlgs 273 (491)
+...+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+.. .+-..+...+.......-.......|+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 334444455567888999999999999999999998887654444444433 1223344444333233334555667777
Q ss_pred HHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhcc---------CcHHHHHHHhhhhCCCCCChhH
Q 011191 274 IINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDY---------KLADTVIRGLLKYWPLTNCQKE 344 (491)
Q Consensus 274 IIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp---------~La~~vi~~llk~WP~tns~Ke 344 (491)
+..+...+- .....-....|+.|.....-.. ...-..++......++ .....++..|- ..+..=.
T Consensus 230 L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~----~~~~~v~ 303 (528)
T 4b8j_A 230 FCRGKPQPS-FEQTRPALPALARLIHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL----HPSPSVL 303 (528)
T ss_dssp HHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT----CSCHHHH
T ss_pred HHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc----CCChhHH
Confidence 776653332 2222233566666665543211 1222223333322222 23333333322 1221111
Q ss_pred hHHHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCCC-cHHHHHHHHHhhcch-----hHHHHHhhccccchhhchHHH
Q 011191 345 VLFLGELEEVLEATQGAEFQRCM-VPLFRQIARCLNSS-HFQVAERALFLWNNE-----HIVSLIAQNRNVILPIIFEAL 417 (491)
Q Consensus 345 vlFL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S~-hfqVAErAL~~w~N~-----~i~~li~~n~~~i~Pii~p~L 417 (491)
..-+.-|..+.. -.+...+.+. ..+...|..++.++ +..|.+.|+....|= .....+.+ ..++|.++..|
T Consensus 304 ~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~i~~L~~lL 380 (528)
T 4b8j_A 304 IPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHHHHHHHH
Confidence 112222333221 1222222222 23455666777787 888888887655442 11111111 13344444433
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHh
Q 011191 418 EKNIQSHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 418 ~~~s~~HWn~~Vr~la~~vlk~l~e~ 443 (491)
. .. +..++..|..++.-+..-
T Consensus 381 ~----~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 381 Q----TA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp H----HS-CHHHHHHHHHHHHHHHHH
T ss_pred h----cC-CHHHHHHHHHHHHHHHcC
Confidence 2 22 666777676666655544
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=81.15 E-value=39 Score=38.93 Aligned_cols=100 Identities=14% Similarity=0.238 Sum_probs=68.4
Q ss_pred hhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhh-------ccccchhhch
Q 011191 342 QKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQ-------NRNVILPIIF 414 (491)
Q Consensus 342 ~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~-------n~~~i~Pii~ 414 (491)
.-..--+..+..+++...++.|.....++...+-.++...+..|+..|+..+.. +...+.. .-...++.++
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~--l~~~~~~~~~~~~~~~~~~~~~ll 569 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ--LVKVIRPLDQPSSFDATPYIKDLF 569 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHHCCSSSCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH--HHHHhcCcccccccchHHHHHHHH
Confidence 334455777888888888888888888888888889999999998777765542 3333322 1112334556
Q ss_pred HHHHHHhh-ccccHHHHHHHHHHHHHHHHh
Q 011191 415 EALEKNIQ-SHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 415 p~L~~~s~-~HWn~~Vr~la~~vlk~l~e~ 443 (491)
|.+..... ...+..||..+..++..+.+.
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 66555432 567889999998888887754
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.35 E-value=54 Score=32.23 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=115.5
Q ss_pred cchHHHHHHHHHHHhcCCCChHHHh-------c---cCC--------HHH-HHHHhhhcCCCChhHHHHHHHHHHHHhhc
Q 011191 175 PHLQLVYELLLRYVVSSDTDTKIAK-------R---YID--------HSF-VLKLLDLFDSEDPREREYLKTILHRIYGK 235 (491)
Q Consensus 175 pHLqlVYeillrfv~s~~~d~~~~k-------~---~id--------~~F-i~~Ll~lfdSeDprERd~LktiLhrIY~k 235 (491)
+|+.-+...|+..+..++-++.+.. . ++. ..+ +..|.+.+.++|+.-|...-.+|..+...
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5666677777777765422322111 0 111 123 34455567888888888888888887776
Q ss_pred ccC-chHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcC-----------------CCCchHHHHHH---HHHH
Q 011191 236 FMV-HRPFIR-KAINNIFYRFIYETERHSGIGELLEILGSIINGF-----------------ALPMKEEHKLF---LVRA 293 (491)
Q Consensus 236 f~~-~R~fIr-k~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngf-----------------a~PLKeehk~f---l~~v 293 (491)
+.. .++++. ..+. .+...+. .....-....+++++.+...- ..++..--+.+ +..+
T Consensus 248 ~~~~~~~~~~~~l~~-~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 248 YYQYMETYMGPALFA-ITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp CGGGCTTTTTTTHHH-HHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 542 234444 2222 2222221 111111234566666665321 01111111111 1122
Q ss_pred HhccCCCCC------cccchHhHHHHHHHHHHhcc-CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhh
Q 011191 294 LLPLHKPKP------VAMYHQQLSYCITQFVEKDY-KLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRC 366 (491)
Q Consensus 294 LlPLhk~~~------~~~y~~qL~~ci~qf~~KDp-~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i 366 (491)
++....... -......-..|+..+...-+ .....++..+...---.+......-+.-+..+.+.+.++.+...
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 405 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 222222110 00111222334444444333 23333444333332223333333445566666665655555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhc--cccchhhchHHHHH
Q 011191 367 MVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQN--RNVILPIIFEALEK 419 (491)
Q Consensus 367 ~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~i~Pii~p~L~~ 419 (491)
+..++..|..+++++|..|-.+|+....+ +...+... ....++.++|.|.+
T Consensus 406 l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~--~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHH--HHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHhcccccccHHHHHHHHHHHHH
Confidence 66788888999999999998888766544 34444332 12345556666654
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=78.32 E-value=38 Score=39.00 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=90.9
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHhhc-ccCchHHHHHHHHHHHHHhhhcccCCcCh-HHHHHHHHHHHhcCCCCch
Q 011191 206 FVLKLLDLFDSEDPREREYLKTILHRIYGK-FMVHRPFIRKAINNIFYRFIYETERHSGI-GELLEILGSIINGFALPMK 283 (491)
Q Consensus 206 Fi~~Ll~lfdSeDprERd~LktiLhrIY~k-f~~~R~fIrk~i~n~f~~fi~e~e~h~GI-aELLeIlgsIIngfa~PLK 283 (491)
-+..|++.+.|+|+..|..-..-|...+.+ +....+...+.+-..+.+.+... +..+ ......++.+..+. .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~----~ 80 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKV----K 80 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTS----C
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhC----C
Confidence 367888889999999988665544444432 22222222222223334444211 1111 12355667777654 2
Q ss_pred HHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccC----------cHHHHHHHhhhhCC-CCCChhHhHHHHHHH
Q 011191 284 EEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYK----------LADTVIRGLLKYWP-LTNCQKEVLFLGELE 352 (491)
Q Consensus 284 eehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~----------La~~vi~~llk~WP-~tns~KevlFL~ele 352 (491)
+++...+...|+.......-.. ...-..++.++++.-+. ....++..|++.=- ..+.....--+.-+.
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 3455555566666554433222 22344566666643332 12333333332211 122233333455555
Q ss_pred HHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 011191 353 EVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFL 392 (491)
Q Consensus 353 ~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~ 392 (491)
++++..+. .+......++..+..++.+++..|-++|+..
T Consensus 160 ~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~a 198 (1230)
T 1u6g_C 160 DMLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 198 (1230)
T ss_dssp HHHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHhHh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 55553322 3334556788888888999999888887753
No 22
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=72.03 E-value=10 Score=33.59 Aligned_cols=90 Identities=11% Similarity=0.174 Sum_probs=74.4
Q ss_pred hHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh---hHHHhhHHHHHHHHHHHhCCCcH
Q 011191 307 HQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG---AEFQRCMVPLFRQIARCLNSSHF 383 (491)
Q Consensus 307 ~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~---~~f~~i~~~lF~~ia~cl~S~hf 383 (491)
.++.+.-++.++..+...+..++..+.+|--++.+.+.+.+|..+..|+..+.. ..|.+.+.++|...-.++....-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 466677788899889999999999998888889999999999999999997753 56777888899888777665666
Q ss_pred HHHHHHHHhhcch
Q 011191 384 QVAERALFLWNNE 396 (491)
Q Consensus 384 qVAErAL~~w~N~ 396 (491)
+-..|-+.+|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6677888999865
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=71.88 E-value=27 Score=33.05 Aligned_cols=87 Identities=8% Similarity=0.109 Sum_probs=56.9
Q ss_pred HHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccc------cch-hhchHHHHHHhh
Q 011191 350 ELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRN------VIL-PIIFEALEKNIQ 422 (491)
Q Consensus 350 ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~------~i~-Pii~p~L~~~s~ 422 (491)
-+..+++.++|.........+...|..++++.+.+|=+.|+.+...- +..... ..+ |-++|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~-----~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS-----MKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH-----HHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----HHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 35556666655221111456777778889999999999998776542 222221 235 66777777654
Q ss_pred ccccHHHHHHHHHHHHHHHH
Q 011191 423 SHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 423 ~HWn~~Vr~la~~vlk~l~e 442 (491)
++=+..||..|..++..++.
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 34478899999999888764
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=71.41 E-value=79 Score=32.42 Aligned_cols=223 Identities=10% Similarity=0.048 Sum_probs=99.5
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhcc--cCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGKF--MVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKE 284 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~kf--~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKe 284 (491)
+..|+..+.|+|+..|..--..|.++..+. ...+..+...+-..+.+++.......-..+.+..|+.|..|. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-----~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-----S 163 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 555677777777777777666666665432 122223333333444554432211122344555666665542 2
Q ss_pred HHHHHH-----HHHHhccCCCCCcccchHhHHHHHHHHHHhcc---------CcHHHHHHHhhhhCCCCCChhHhHHHHH
Q 011191 285 EHKLFL-----VRALLPLHKPKPVAMYHQQLSYCITQFVEKDY---------KLADTVIRGLLKYWPLTNCQKEVLFLGE 350 (491)
Q Consensus 285 ehk~fl-----~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp---------~La~~vi~~llk~WP~tns~KevlFL~e 350 (491)
++...+ ...|+.|.+.... ....+-..++..+...++ .....+++.+- . .+..=...-+.-
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~-~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~---~~~~v~~~a~~~ 238 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSV-EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-S---NKPSLIRTATWT 238 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-S---CCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-c---CCHHHHHHHHHH
Confidence 222221 2333333333211 112233334444433322 23333333332 2 221111112233
Q ss_pred HHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcc-----hhHHHHHhhccccchhhchHHHHHHhhccc
Q 011191 351 LEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNN-----EHIVSLIAQNRNVILPIIFEALEKNIQSHW 425 (491)
Q Consensus 351 le~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~i~Pii~p~L~~~s~~HW 425 (491)
|..+.....+..-......+...|...+.+.+..|...|+..+.| +.....+.+ ..+ +|.|..... |=
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~----v~~Lv~lL~-~~ 311 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID--VRI----PKRLVELLS-HE 311 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTC----HHHHHHGGG-CS
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh--cCc----HHHHHHHHC-CC
Confidence 333332221111111223455666777788888888777755433 111111111 123 444444322 44
Q ss_pred cHHHHHHHHHHHHHHHHhCHH
Q 011191 426 NQAVHGLTVNVRKMFLDMDAE 446 (491)
Q Consensus 426 n~~Vr~la~~vlk~l~e~D~~ 446 (491)
+..|+..|..++..+..-++.
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~ 332 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDL 332 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHH
T ss_pred ChhhHHHHHHHHHHHHcCCHH
Confidence 677888888888777655544
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=70.01 E-value=67 Score=31.53 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhcc-----hhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHh
Q 011191 369 PLFRQIARCLNSSHFQVAERALFLWNN-----EHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 369 ~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~ 443 (491)
.+...|...+.+.+-.|.+.|+....| +.....+. ...++|.++..| + |=+..++..+..++..+..-
T Consensus 192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll----~-~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI--DAGVCRRLVELL----M-HNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHH--HTTTHHHHHHHT----T-CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHH--HcCcHHHHHHHH----C-CCchhHHHHHHHHHHHHhhC
Confidence 344455666778887777766544322 11111111 122344443333 2 33567787787777777655
Q ss_pred CH
Q 011191 444 DA 445 (491)
Q Consensus 444 D~ 445 (491)
++
T Consensus 265 ~~ 266 (450)
T 2jdq_A 265 DD 266 (450)
T ss_dssp CH
T ss_pred Ch
Confidence 54
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=68.96 E-value=66 Score=34.05 Aligned_cols=175 Identities=11% Similarity=0.120 Sum_probs=105.4
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchH
Q 011191 205 SFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKE 284 (491)
Q Consensus 205 ~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKe 284 (491)
..+..|.+.+.+.|..-|..+-.-++++-.+|...- ..+-+.+.+++... .-.-..|.+..++.|+.++.- +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 356678888888888888887777777777764322 22334555555322 222256677788888877532 222
Q ss_pred HHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHH
Q 011191 285 EHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQ 364 (491)
Q Consensus 285 ehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~ 364 (491)
.-...|.. ....-....-.....+++.+|...-+. ...+++.+++.+...++.-+...|.-+..+....+. +-+
T Consensus 427 ~~v~~L~~----~l~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-~~~ 500 (591)
T 2vgl_B 427 SIIATLCE----NLDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-ETQ 500 (591)
T ss_dssp TTHHHHHH----TTTTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-TTH
T ss_pred HHHHHHHH----HHHhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-HHH
Confidence 11122222 222111122245556777777554433 678999999988877766666777888887765543 222
Q ss_pred hhHHHHHHHHHHHh-CCCcHHHHHHHHHhhc
Q 011191 365 RCMVPLFRQIARCL-NSSHFQVAERALFLWN 394 (491)
Q Consensus 365 ~i~~~lF~~ia~cl-~S~hfqVAErAL~~w~ 394 (491)
..+..+ +..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHHHHHH
Confidence 333333 34554 5799999999988764
No 27
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=67.37 E-value=64 Score=28.21 Aligned_cols=182 Identities=13% Similarity=0.061 Sum_probs=84.8
Q ss_pred CCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHH-HHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCC
Q 011191 202 IDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPF-IRKAINNIFYRFIYETERHSGIGELLEILGSIINGFAL 280 (491)
Q Consensus 202 id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~f-Irk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~ 280 (491)
....+...|+.++.|+|+.-|...-..|..+-..-...+.. +....-..+.+++... ...-....+..|+.+..+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-- 85 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG-- 85 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC--
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC--
Confidence 34445567888888999999988888887776433333322 2222233445554332 1122344556666665442
Q ss_pred CchHHHHHHH-----HHHHhccCCCCCcccchHhHHHHHHHHHHhccC---------cHHHHHHHhhhhCCCCCChhHhH
Q 011191 281 PMKEEHKLFL-----VRALLPLHKPKPVAMYHQQLSYCITQFVEKDYK---------LADTVIRGLLKYWPLTNCQKEVL 346 (491)
Q Consensus 281 PLKeehk~fl-----~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~---------La~~vi~~llk~WP~tns~Kevl 346 (491)
++.+..+ ...|+.+.+..... -...-..++..+...++. ....+++.+- ..+..=+..
T Consensus 86 ---~~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~ 157 (210)
T 4db6_A 86 ---NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQE 157 (210)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHH
T ss_pred ---cHHHHHHHHCCCHHHHHHHHcCCcHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHH
Confidence 2222221 35566666665321 122223334433333222 2233333322 122211111
Q ss_pred HHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHHhhcc
Q 011191 347 FLGELEEVLEATQGAEFQRCM-VPLFRQIARCLNSSHFQVAERALFLWNN 395 (491)
Q Consensus 347 FL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N 395 (491)
-+.-|..+.. ..++.-..+. ......|...+.+.+..|.+.|+..+.+
T Consensus 158 a~~aL~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 158 ALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1222333322 1122222221 2356677778888888888888866543
No 28
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=67.28 E-value=1.1e+02 Score=30.89 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=104.3
Q ss_pred CCcChHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCC
Q 011191 260 RHSGIGELLEILGSIINGFALPMKEEHKLFL--VRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWP 337 (491)
Q Consensus 260 ~h~GIaELLeIlgsIIngfa~PLKeehk~fl--~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP 337 (491)
.+.|-.|..+++..+++-|+.+-.+.-+.-+ ...+.+. .++ .-.++..+.||-.-..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~---------~~e-~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI---------AED-VIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT---------SSC-GGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC---------HHH-HHHHHHHHHhhcCCCcHhHHHHH----
Confidence 4678888999999999999998765544422 2333332 122 22667777777776677888775
Q ss_pred CCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhccccchhhchHHH
Q 011191 338 LTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEAL 417 (491)
Q Consensus 338 ~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L 417 (491)
|.-+..|. .++ +..++..-+-+|+.+.|.-|.-.|+.-. ..++..+.+.+ .-.++.+
T Consensus 125 ----------LRtL~~I~---~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~-----~kL~~~~pe~v-~~~~~~l 181 (355)
T 3tjz_B 125 ----------VRALCQIT---DST----MLQAIERYMKQAIVDKVPSVSSSALVSS-----LHLLKCSFDVV-KRWVNEA 181 (355)
T ss_dssp ----------HHHHHHHC---CTT----THHHHHHHHHHHHTCSSHHHHHHHHHHH-----HHHTTTCHHHH-HTTHHHH
T ss_pred ----------HHHHhcCC---CHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH-----HHHhccCHHHH-HHHHHHH
Confidence 44444442 232 4567888899999999999999988552 24444444433 3355555
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 011191 418 EKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYE 456 (491)
Q Consensus 418 ~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~ 456 (491)
.+.. .-=|..|.--|..++..+.+.|+..+.+....+.
T Consensus 182 ~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 182 QEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 5532 3336677777888888888888877777766554
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=67.22 E-value=1.1e+02 Score=31.07 Aligned_cols=225 Identities=14% Similarity=0.069 Sum_probs=113.1
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhccc--CchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGKFM--VHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKE 284 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~kf~--~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKe 284 (491)
+..|+..+.|+|+..|..--..|.++..... ..+.++...+-..+.+++.......--.+.+..|+.|..|- .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 4567777888888888877777777754332 23334444444556666643321222345567777777653 2
Q ss_pred HHHHH-----HHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHH-----HHHhhhhC-CCCCChhHhHHHHHHHH
Q 011191 285 EHKLF-----LVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTV-----IRGLLKYW-PLTNCQKEVLFLGELEE 353 (491)
Q Consensus 285 ehk~f-----l~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~v-----i~~llk~W-P~tns~KevlFL~ele~ 353 (491)
+++.. ....|+.|.+.... ....+-..++......++.....+ +..|++.- ...+..=...-+.-|..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33333 24556777766432 223344455555554444322222 22333322 11121111112223333
Q ss_pred HHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcch-----hHHHHHhhccccchhhchHHHHHHhhccccHH
Q 011191 354 VLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNE-----HIVSLIAQNRNVILPIIFEALEKNIQSHWNQA 428 (491)
Q Consensus 354 iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~-----~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~ 428 (491)
+...-+...+ .....+...|...+.+.+..|.+.|+..+.|- .....+.+ .. ++|.|.+.. .|=+..
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g----~v~~Lv~lL-~~~~~~ 301 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE--AG----VCPRLVELL-LHPSPS 301 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH--TT----CHHHHHHHT-TCSCHH
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--cC----HHHHHHHHH-cCCChh
Confidence 3322211121 23356677778888999999988877655431 11111111 12 344444432 233667
Q ss_pred HHHHHHHHHHHHHHhCH
Q 011191 429 VHGLTVNVRKMFLDMDA 445 (491)
Q Consensus 429 Vr~la~~vlk~l~e~D~ 445 (491)
|+..|..++.-+..-++
T Consensus 302 v~~~a~~~L~nl~~~~~ 318 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDD 318 (528)
T ss_dssp HHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 88888887777765444
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=67.13 E-value=49 Score=29.53 Aligned_cols=192 Identities=14% Similarity=0.077 Sum_probs=93.9
Q ss_pred HHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHH
Q 011191 196 KIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIR-KAINNIFYRFIYETERHSGIGELLEILGSI 274 (491)
Q Consensus 196 ~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIr-k~i~n~f~~fi~e~e~h~GIaELLeIlgsI 274 (491)
...+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ...-..+.+.+.. ....-....+..|+.+
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANI 113 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 4455556667899999999999999999988888888765444444332 2233445555542 2222233445566665
Q ss_pred HhcCCCCchHHHHHH-----HHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHH-----HHHHhhhhCCCCCChhH
Q 011191 275 INGFALPMKEEHKLF-----LVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADT-----VIRGLLKYWPLTNCQKE 344 (491)
Q Consensus 275 Ingfa~PLKeehk~f-----l~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~-----vi~~llk~WP~tns~Ke 344 (491)
..+. ++.+.. ....|+.+.+...- .....-..++......++..... ++..|+..=-..+..-.
T Consensus 114 ~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 187 (252)
T 4hxt_A 114 ASGP-----DEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 187 (252)
T ss_dssp TTSC-----HHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred HcCC-----HHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHH
Confidence 5332 222222 24556666665542 22333344444444333332111 11222221111221111
Q ss_pred hHHHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHHhhcc
Q 011191 345 VLFLGELEEVLEATQGAEFQRCM-VPLFRQIARCLNSSHFQVAERALFLWNN 395 (491)
Q Consensus 345 vlFL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N 395 (491)
..-+.-|..+.. ..++.-+.+. ..+...|.+.+.+.+..|.+.|+....|
T Consensus 188 ~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 188 KEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 111222222221 1222222221 2355667777778888888888766554
No 31
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=60.81 E-value=23 Score=30.24 Aligned_cols=85 Identities=11% Similarity=0.191 Sum_probs=62.9
Q ss_pred HhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCC---hhHH----HhhHHHHHHHHHHHhCC
Q 011191 308 QQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQ---GAEF----QRCMVPLFRQIARCLNS 380 (491)
Q Consensus 308 ~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~---~~~f----~~i~~~lF~~ia~cl~S 380 (491)
++-+.-+++++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+..+. ...| .+++..+|..++ ..
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~---~~ 97 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK---DP 97 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTC---ST
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhC---CH
Confidence 4445566778777888888888888888888999999999999999998652 2344 444555554332 45
Q ss_pred CcHHHHHHHHHhhcc
Q 011191 381 SHFQVAERALFLWNN 395 (491)
Q Consensus 381 ~hfqVAErAL~~w~N 395 (491)
.+-+-..+-+.+|..
T Consensus 98 ~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 98 SVSKSVERIFKIWED 112 (132)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 667778889999986
No 32
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=57.42 E-value=87 Score=30.44 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHhhc-ccc---chhhchHHHHHHhhc
Q 011191 348 LGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQN-RNV---ILPIIFEALEKNIQS 423 (491)
Q Consensus 348 L~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n-~~~---i~Pii~p~L~~~s~~ 423 (491)
++.|.+.++. .+++......-+|+-++--+.+.|++|+.++|.+... ++..+.+. .+. -...++|.|..- -+
T Consensus 67 le~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~--l~~~l~~~~y~~~~~ea~~~lP~LveK-lG 142 (266)
T 2of3_A 67 LDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKV--IVELIRDTETPMSQEEVSAFVPYLLLK-TG 142 (266)
T ss_dssp HHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHH--HHHHHHHTTCCCCHHHHHHHHHHHHHG-GG
T ss_pred HHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHHHHhccccchHHHHHHHHHHHHHH-hC
Confidence 3333334443 3444455555678877766667899999999988754 33434332 111 134567776653 47
Q ss_pred cccHHHHHHHHHHHHHHHHhC-HH-HHHHHHHHH
Q 011191 424 HWNQAVHGLTVNVRKMFLDMD-AE-LFEECQNQY 455 (491)
Q Consensus 424 HWn~~Vr~la~~vlk~l~e~D-~~-lf~~c~~~~ 455 (491)
|=++.||+.+..+++.+.++- |. +|+.+...+
T Consensus 143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL 176 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG
T ss_pred CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 778999999999999998853 43 666665544
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=55.75 E-value=1.8e+02 Score=30.88 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhcc
Q 011191 369 PLFRQIARCLNSSHFQVAERALFLWNN 395 (491)
Q Consensus 369 ~lF~~ia~cl~S~hfqVAErAL~~w~N 395 (491)
.+-..+..|..|.+..|=+||..+|.=
T Consensus 548 ~l~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 548 RIKKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344556777888888888888887754
No 34
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=55.06 E-value=1.4e+02 Score=33.91 Aligned_cols=220 Identities=11% Similarity=0.083 Sum_probs=99.2
Q ss_pred CCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCC
Q 011191 202 IDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALP 281 (491)
Q Consensus 202 id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~P 281 (491)
.|-.-+.+++..+.++|..+|......|..+... .+.=..... ++.+=-...-++.| +.+|...|+..-..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p~~~~~l~~----iL~~s~~~~vr~~a----a~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDAWQKADQ----ILQFSTNPQSKFIA----LSILDKLITRKWKL 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-TTGGGGHHH----HHHHCSCHHHHHHH----HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-chHHHHHHH----HHhhCCCHHHHHHH----HHHHHHHHHhhCcc
Confidence 4455566777777777877777777777665432 111011111 11000000001111 22333333321123
Q ss_pred chHHHHHHHHHHHhccCCCCC--------cccchHhHHHHHHHHHHh-----ccCcHHHHHHHhhhhCCCCCC-hhH--h
Q 011191 282 MKEEHKLFLVRALLPLHKPKP--------VAMYHQQLSYCITQFVEK-----DYKLADTVIRGLLKYWPLTNC-QKE--V 345 (491)
Q Consensus 282 LKeehk~fl~~vLlPLhk~~~--------~~~y~~qL~~ci~qf~~K-----Dp~La~~vi~~llk~WP~tns-~Ke--v 345 (491)
+.++.+..+...|+.+..... -.....++..|+...... -|.+...++.. |- ++. .++ .
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~----~~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGS----SS-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHH----HT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHH----Hc-cChHHHHHHH
Confidence 567778777777777654321 123345666666665543 23333333332 21 222 233 2
Q ss_pred HHHHHHHHHHHhCCh------------hHHHhhHHHHHHHHHHHhCC-CcHHHHHHHHHhhc---chhHHHHHhhccccc
Q 011191 346 LFLGELEEVLEATQG------------AEFQRCMVPLFRQIARCLNS-SHFQVAERALFLWN---NEHIVSLIAQNRNVI 409 (491)
Q Consensus 346 lFL~ele~iLe~~~~------------~~f~~i~~~lF~~ia~cl~S-~hfqVAErAL~~w~---N~~i~~li~~n~~~i 409 (491)
.+|.-+-+.+..... +.+..-...+|..+..++.+ .+..+...||.... +-.-.+.+.+ ..+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~--~~l 236 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE--TNI 236 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS--SSH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh--hhH
Confidence 233333222221111 23444456677777777754 45566666664332 1000111111 224
Q ss_pred hhhchHHHHHHhhccccHHHHHHHHHHHHHHHHh
Q 011191 410 LPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDM 443 (491)
Q Consensus 410 ~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~ 443 (491)
++.++..+.. +..++..|..++..+...
T Consensus 237 l~~l~~~~l~------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 LELLSTKFMT------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTHHHH------SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC------CHhHHHHHHHHHHHHHhC
Confidence 4444432221 566777777766665543
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=53.16 E-value=2.3e+02 Score=30.06 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCC---CC-
Q 011191 266 ELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLT---NC- 341 (491)
Q Consensus 266 ELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~t---ns- 341 (491)
++..-+|.+...|+ |-.+.+. .+|+-+.+... ....++...++.+.+.++|.+-..++..|..+.... .+
T Consensus 404 ~~v~~I~~la~k~~-~~~~~~v----~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~ 477 (618)
T 1w63_A 404 DCASGIFLAAEKYA-PSKRWHI----DTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPL 477 (618)
T ss_dssp HHHHHHHHHHHSSC-CCHHHHH----HHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHHHHhC-ccHHHHH----HHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHH
Confidence 44455555555553 3333332 33444444433 234456778899999999999888888887776532 11
Q ss_pred -hhHhHHHHHHHHHHHh----------CChhHHHhhHHHHHHHHHHHh----CCCcHHH-HHHHH-HhhcchhHHHHHhh
Q 011191 342 -QKEVLFLGELEEVLEA----------TQGAEFQRCMVPLFRQIARCL----NSSHFQV-AERAL-FLWNNEHIVSLIAQ 404 (491)
Q Consensus 342 -~KevlFL~ele~iLe~----------~~~~~f~~i~~~lF~~ia~cl----~S~hfqV-AErAL-~~w~N~~i~~li~~ 404 (491)
..-+-.|+|..+.+.. +.|... +..|..++ .+++.|- +..|+ .++..
T Consensus 478 ~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~--------- 541 (618)
T 1w63_A 478 VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV-------LDILESVLISNMSTSVTRGYALTAIMKLSTR--------- 541 (618)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH-------HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHhhhHHHhcccccccccccCCCHHHH-------HHHHHHHHhccCCCHHHHHHHHHHHHHHHHh---------
Confidence 1223456666665542 122222 22222233 2222221 11222 34332
Q ss_pred ccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHH
Q 011191 405 NRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELF 448 (491)
Q Consensus 405 n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf 448 (491)
.. ...+.+..-|.+. ..+-|..||..|...++++.. ++.+-
T Consensus 542 ~~-~~~~~l~~~L~~~-~~~~d~evrdRA~~y~~ll~~-~~~~~ 582 (618)
T 1w63_A 542 FT-CTVNRIKKVVSIY-GSSIDVELQQRAVEYNALFKK-YDHMR 582 (618)
T ss_dssp CS-SCHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHT-TTTHH
T ss_pred Cc-chHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcC-cHHHH
Confidence 11 2234444445543 578899999999999999876 55443
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=50.99 E-value=1.3e+02 Score=26.56 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=109.8
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHH-HHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPF-IRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEE 285 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~f-Irk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKee 285 (491)
|..|+.++.++|+..|...-..|..+-......|.. +...+-..+.+++... ...-....+..|+.+..+- ++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC-----hH
Confidence 567899999999888888888888876654433333 3323344555555332 1112334455555554331 23
Q ss_pred HHHH-----HHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHH-----HHHHhhhhCCCCCChhHhHHHHHHHHHH
Q 011191 286 HKLF-----LVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADT-----VIRGLLKYWPLTNCQKEVLFLGELEEVL 355 (491)
Q Consensus 286 hk~f-----l~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~-----vi~~llk~WP~tns~KevlFL~ele~iL 355 (491)
.+.. ....|+.+.+...- .....-..++......++..... ++..|++.=-..+..=...-+.-|..+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2222 24556666665432 22233333444444333332221 1222222211222111111122222221
Q ss_pred HhCChhHHHhh-HHHHHHHHHHHhCCCcHHHHHHHHHhhcc-----hhHHHHHhhccccchhhchHHHHHHhhccccHHH
Q 011191 356 EATQGAEFQRC-MVPLFRQIARCLNSSHFQVAERALFLWNN-----EHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAV 429 (491)
Q Consensus 356 e~~~~~~f~~i-~~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~V 429 (491)
. ..++.-+.+ .......|..++.+++..|.+.|+....| +.....+.+ .-+++.|.+..+ +=+..+
T Consensus 157 ~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~-~~~~~v 228 (252)
T 4hxt_A 157 S-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLT-STDSEV 228 (252)
T ss_dssp T-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGG-CSCHHH
T ss_pred c-CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHC-CCcHHH
Confidence 1 122221211 12466777888889999998888865543 222222211 124555555433 447789
Q ss_pred HHHHHHHHHHHHHhC
Q 011191 430 HGLTVNVRKMFLDMD 444 (491)
Q Consensus 430 r~la~~vlk~l~e~D 444 (491)
+..|..++.-+...+
T Consensus 229 ~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 229 QKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999998888887654
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=50.79 E-value=1.4e+02 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhh
Q 011191 200 RYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYG 234 (491)
Q Consensus 200 ~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~ 234 (491)
..++...|..|+.++.++|+.-|...-.+|..+-.
T Consensus 49 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 34555677889999999998888887777776654
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=48.89 E-value=2.2e+02 Score=29.24 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=60.6
Q ss_pred ChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHH-HHHHHHHhhhcccCCcChHH----HH
Q 011191 194 DTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKA-INNIFYRFIYETERHSGIGE----LL 268 (491)
Q Consensus 194 d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~-i~n~f~~fi~e~e~h~GIaE----LL 268 (491)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.....|..+... .-..+...+........... +.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 34444555666678889999999999999999999999877655555554432 22334444433222222222 23
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCC
Q 011191 269 EILGSIINGFALPMKEEHKLFLVRALLPLHKPKP 302 (491)
Q Consensus 269 eIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~ 302 (491)
..+..+..|-..........-...+|..|.....
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~ 245 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC
Confidence 3444444443222232332223455566655543
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=47.33 E-value=2.1e+02 Score=27.75 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhh-hcCCCChhHHHHHHHHHHHHhhcccCchHH
Q 011191 176 HLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLD-LFDSEDPREREYLKTILHRIYGKFMVHRPF 242 (491)
Q Consensus 176 HLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~-lfdSeDprERd~LktiLhrIY~kf~~~R~f 242 (491)
|-....+.|..++.+. ..+..+....=+..|+. ++.|+++.=|...-.+|-.|-+.-...|..
T Consensus 56 ~k~~Al~~L~~lv~~~----dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~ 119 (296)
T 1xqr_A 56 EREGALELLADLCENM----DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ 119 (296)
T ss_dssp HHHHHHHHHHHHHTSH----HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCh----hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455667777777653 23444444445778999 999999999999999988888754444433
No 40
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=47.31 E-value=2.4e+02 Score=31.29 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhCChhHH-Hhh-HHHHHHHHHHHhCCCcHHHHHHHHHhhcc
Q 011191 345 VLFLGELEEVLEATQGAEF-QRC-MVPLFRQIARCLNSSHFQVAERALFLWNN 395 (491)
Q Consensus 345 vlFL~ele~iLe~~~~~~f-~~i-~~~lF~~ia~cl~S~hfqVAErAL~~w~N 395 (491)
--|++.+..++...+..-+ ... +..+|.....|+..+|.-++..|+.+|.+
T Consensus 803 ~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~ 855 (971)
T 2x1g_F 803 ETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTH 855 (971)
T ss_dssp HHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3445555555554433222 134 56788888889998998888889999966
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=45.09 E-value=2.9e+02 Score=28.92 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHH-------------HhhcccCchHHH
Q 011191 177 LQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHR-------------IYGKFMVHRPFI 243 (491)
Q Consensus 177 LqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhr-------------IY~kf~~~R~fI 243 (491)
=+++|-.+..+... ++..+-- + +..|...+.++||.-|...-..|-+ +.....+..+++
T Consensus 66 Krl~yl~l~~~~~~---~~e~~~l-~----~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~V 137 (591)
T 2vgl_B 66 KKLVYLYLMNYAKS---QPDMAIM-A----VNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYV 137 (591)
T ss_dssp HHHHHHHHHHHHHH---SHHHHHT-T----HHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHH
T ss_pred HHHHHHHHHHHccc---CchHHHH-H----HHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHH
Confidence 47888888776553 2322211 1 3445566777888777653333322 222233556778
Q ss_pred HHHHHHHHHHhhh
Q 011191 244 RKAINNIFYRFIY 256 (491)
Q Consensus 244 rk~i~n~f~~fi~ 256 (491)
|+.....++++..
T Consensus 138 Rk~A~~al~~i~~ 150 (591)
T 2vgl_B 138 RKTAAVCVAKLHD 150 (591)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8877777666543
No 42
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=41.55 E-value=2.9e+02 Score=31.86 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhHHHHHh--hccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011191 364 QRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIA--QNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFL 441 (491)
Q Consensus 364 ~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~--~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~ 441 (491)
..+|+||. .+++.-..--+=-.+.-+.+| ...|+. ......+|.++|.|.++..++=++.+|..|..+++.|.
T Consensus 249 l~~~~p~l---~r~l~~~~~~~~r~~~~~~~n--~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 249 LSIMVPLL---SRGLNERETGIKRKSAVIIDN--MCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHH---HHHHTSSSHHHHHHHHHHHHH--HHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhhhccCcchhheeeEEEEcc--hhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 45777775 566654332222223333322 222222 22466789999999999999999999999999999996
Q ss_pred Hh
Q 011191 442 DM 443 (491)
Q Consensus 442 e~ 443 (491)
+.
T Consensus 324 ~~ 325 (986)
T 2iw3_A 324 RV 325 (986)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=40.09 E-value=3.4e+02 Score=28.96 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=56.5
Q ss_pred hHhHH----HHHHHHHH---hccCc-HHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHh
Q 011191 307 HQQLS----YCITQFVE---KDYKL-ADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCL 378 (491)
Q Consensus 307 ~~qL~----~ci~qf~~---KDp~L-a~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl 378 (491)
+..+. +|+..|.+ ..+.. ...+++.+.+.++..++.-+...|.-+..+.-.. |+ .... +-..+..|.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~~~---i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VKAT---IQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GHHH---HHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HHHH---HHHHHHHHh
Confidence 44566 88888854 33333 3477889988888888777777787777765543 32 2222 334445566
Q ss_pred C--CCcHHHHHHHHHhhc
Q 011191 379 N--SSHFQVAERALFLWN 394 (491)
Q Consensus 379 ~--S~hfqVAErAL~~w~ 394 (491)
. |.+..|=+||..+|.
T Consensus 568 ~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHSCSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 6 999999999998874
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=39.19 E-value=53 Score=37.60 Aligned_cols=161 Identities=9% Similarity=0.115 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCCchHH----HHHHHHHHHhccCCC----CCcccchHhHHHHHHHHHHhc-cCcHHHHHHHhhhhCCC
Q 011191 268 LEILGSIINGFALPMKEE----HKLFLVRALLPLHKP----KPVAMYHQQLSYCITQFVEKD-YKLADTVIRGLLKYWPL 338 (491)
Q Consensus 268 LeIlgsIIngfa~PLKee----hk~fl~~vLlPLhk~----~~~~~y~~qL~~ci~qf~~KD-p~La~~vi~~llk~WP~ 338 (491)
+.+|...|+ .+.++ .+..+...|+.+... ..-...-.+|..+++.++..+ |.-=...+..|+..|-.
T Consensus 64 ~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~ 139 (980)
T 3ibv_A 64 LQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAA 139 (980)
T ss_dssp HHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcC
Confidence 445555666 23345 566666666666553 111234467777777766544 22222233333333322
Q ss_pred CCC-hhHhHHHHHHHHHHHhC-------Ch---------------hHHHhhHHHHHHHHHHHhCCCcHHHHHHHHH---h
Q 011191 339 TNC-QKEVLFLGELEEVLEAT-------QG---------------AEFQRCMVPLFRQIARCLNSSHFQVAERALF---L 392 (491)
Q Consensus 339 tns-~KevlFL~ele~iLe~~-------~~---------------~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~---~ 392 (491)
.+. .--..||.-+..|-|-+ +. ..+..+....+..+..|..+.+-.++..+|. -
T Consensus 140 ~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s 219 (980)
T 3ibv_A 140 SSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQ 219 (980)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 232 22334555555332211 00 1133445667778888887778777776664 4
Q ss_pred hcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011191 393 WNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFL 441 (491)
Q Consensus 393 w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~ 441 (491)
|-+---.+++.. ..+++.+|..|. +..++..|..++..+.
T Consensus 220 ~i~wi~~~~i~~--~~ll~~l~~~L~-------~~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 220 WVSWININLIVN--EPCMNLLYSFLQ-------IEELRCAACETMTEIV 259 (980)
T ss_dssp HTTTSCHHHHHC--HHHHHHHHHHTT-------SHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHhhhc--chHHHHHHHHcC-------ChHHHHHHHHHHHHHH
Confidence 444222333432 334455443332 2677888888766554
No 45
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=37.33 E-value=3.6e+02 Score=31.24 Aligned_cols=32 Identities=6% Similarity=0.226 Sum_probs=24.6
Q ss_pred CCHHHHHHHhhhcCCCChhHHHHHHHHHHHHh
Q 011191 202 IDHSFVLKLLDLFDSEDPREREYLKTILHRIY 233 (491)
Q Consensus 202 id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY 233 (491)
+|-.-+.+++..+.++|+.+|......|..+-
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q 56 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK 56 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56667788888888889888888888776543
No 46
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=37.24 E-value=4.1e+02 Score=28.28 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=43.1
Q ss_pred cHHHHHHHhhhhCCCCCCh-----hHhHHHHHHHHHHHhCC-hhHHHhhHHHHHHHHHHHhCC
Q 011191 324 LADTVIRGLLKYWPLTNCQ-----KEVLFLGELEEVLEATQ-GAEFQRCMVPLFRQIARCLNS 380 (491)
Q Consensus 324 La~~vi~~llk~WP~tns~-----KevlFL~ele~iLe~~~-~~~f~~i~~~lF~~ia~cl~S 380 (491)
+...+.+.++-.|-..... .++-+|.-+.++...+. .++-..++..||..|-..+=-
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 5556667777777766665 78899999999999888 666677888889888766543
No 47
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=35.52 E-value=4.9e+02 Score=29.15 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=74.8
Q ss_pred CCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCC---------------c------------------
Q 011191 216 SEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERH---------------S------------------ 262 (491)
Q Consensus 216 SeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h---------------~------------------ 262 (491)
++-.|-++.+.++|.|.|..-..-|.++.+.|.+-.-+|+..-+.- .
T Consensus 67 ~~~~~~~~~~e~~l~~~~q~~~~s~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~~ 146 (778)
T 3opb_A 67 SEALKDRQKIEEILTRSYQDHSESRVHLSKLIQNDIPFALNLFEILSRSSIHVFVGCFSNKDATIALLNELQIRIHYGED 146 (778)
T ss_dssp STTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTHHHHHHHHHTSCGGGHHHHHTTCCSGGGGHHHHHHHHHHHHHTCS
T ss_pred hhhcccHHHHHHHHHHHhhCcHHHHHHHHHHHHhChHHHHHHHHhccCCceEeecccCCCHHHHHHHHHHHHHHhhcCCC
Confidence 4444567789999999999877778887777766433433221100 0
Q ss_pred -ChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhccCcHHHHHHHhhh-hC----
Q 011191 263 -GIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLK-YW---- 336 (491)
Q Consensus 263 -GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp~La~~vi~~llk-~W---- 336 (491)
-+.=+|.++.+++++|..-..+ ..||.+.|.|=.+. ....+...-.+.++.++.++-+...+..++. .=
T Consensus 147 ~~~~~~l~~~~~l~~~~~~~~~~--~~~l~~~~~~~~~~---~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 221 (778)
T 3opb_A 147 THVTYLLSIILQLLNKFKYNFKE--VRFLVKELILRISE---DEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAE 221 (778)
T ss_dssp SCHHHHHHHHHHHHHHSCCCSTT--TTHHHHHHHTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHcCccccc--hhhHHHHhccccCh---hhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhc
Confidence 2333455555666666555444 55666666551111 2334444556666666666655444433332 22
Q ss_pred CCCCChhHhHHHHHHHHHHHhCC
Q 011191 337 PLTNCQKEVLFLGELEEVLEATQ 359 (491)
Q Consensus 337 P~tns~KevlFL~ele~iLe~~~ 359 (491)
+.....-=+.++.-++.+++.++
T Consensus 222 ~~~~~~~~~~~~~~l~~lfPi~p 244 (778)
T 3opb_A 222 IDVGNDPLSIIVKTLSELYPSLT 244 (778)
T ss_dssp HTCSSCHHHHHHHHHHHHTTTTH
T ss_pred cCCCCccHHHHHHHHHHHhcCCH
Confidence 22122334555666666665443
No 48
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=34.40 E-value=49 Score=37.91 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHH
Q 011191 207 VLKLLDLFDSEDPREREYLKTILHRIYGKFM-VHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEE 285 (491)
Q Consensus 207 i~~Ll~lfdSeDprERd~LktiLhrIY~kf~-~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKee 285 (491)
+++.++.+. .|.+=|+.....+||+...+. ...|++-+.+..++ ..-...+.++.|.++|.+|.+|. .+
T Consensus 704 il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll-----~~~~~~e~~~fL~l~~qli~~f~----~~ 773 (980)
T 3ibv_A 704 IFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL-----NSIDMNELVDVLSFISQLIHIYK----DN 773 (980)
T ss_dssp HHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH-----HHCCTTTHHHHHHHHHHHHHHTT----TT
T ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHH----HH
Confidence 344555554 556777779999999998654 34556666655544 22246789999999999999994 44
Q ss_pred HHHHHHHHHhccC
Q 011191 286 HKLFLVRALLPLH 298 (491)
Q Consensus 286 hk~fl~~vLlPLh 298 (491)
+..++...|-||.
T Consensus 774 ~~~~l~~ll~~l~ 786 (980)
T 3ibv_A 774 MMEITNRMLPTLL 786 (980)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655543
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=33.63 E-value=3.8e+02 Score=26.92 Aligned_cols=169 Identities=8% Similarity=0.010 Sum_probs=83.3
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHH
Q 011191 210 LLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLF 289 (491)
Q Consensus 210 Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~f 289 (491)
+..+..+++++-|.....++..+|..+.. .++..+-..+...+.+. ...--....+.+|.+..... .+.+...
T Consensus 131 l~~l~~~~~~~~R~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~---~~~~~~~ 203 (588)
T 1b3u_A 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSS---AVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLE---LDNVKSE 203 (588)
T ss_dssp HHHHHTCSSHHHHHHHGGGHHHHTTTSCH---HHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSC---HHHHHHT
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc---HHhHHHH
Confidence 34456788999999988898888877552 34555555555544322 11112345677777775432 1222222
Q ss_pred HHHHHhccCCCCCcccchHhHHHHHHHHHHhcc------CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHH
Q 011191 290 LVRALLPLHKPKPVAMYHQQLSYCITQFVEKDY------KLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEF 363 (491)
Q Consensus 290 l~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KDp------~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f 363 (491)
+...|+.+...... .....-..++..+.+.-+ .+.+ .+..++. -.+..-...-..-+..+.+..+++.+
T Consensus 204 l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~ 278 (588)
T 1b3u_A 204 IIPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQEDLEALVMP-TLRQAAE---DKSWRVRYMVADKFTELQKAVGPEIT 278 (588)
T ss_dssp HHHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSCHHHHHHHTHH-HHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHcc---CCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 33344444433321 111222344444443322 1222 2222221 11111222334455566555555544
Q ss_pred HhhHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q 011191 364 QRCMVPLFRQIARCLNSSHFQVAERALFLW 393 (491)
Q Consensus 364 ~~i~~~lF~~ia~cl~S~hfqVAErAL~~w 393 (491)
.. .++..+...+..++..|-+.|..-+
T Consensus 279 ~~---~l~~~l~~~l~d~~~~vr~~a~~~l 305 (588)
T 1b3u_A 279 KT---DLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp HH---THHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hh---HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33 3444556667788888877766543
No 50
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=33.11 E-value=83 Score=27.55 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=62.0
Q ss_pred HhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCCh----------hHHHhhHHHHHHHHHHH
Q 011191 308 QQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQG----------AEFQRCMVPLFRQIARC 377 (491)
Q Consensus 308 ~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~----------~~f~~i~~~lF~~ia~c 377 (491)
++-..-++..+..+.+.+..++..+.++--++.+.+.+.+|..+..|+..... ..|.+.+..+|..+..|
T Consensus 23 ~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~ 102 (145)
T 3d9j_A 23 KAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRC 102 (145)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhC
Confidence 44555666667777777777777777777778888889999999999875432 24556667777655555
Q ss_pred hCCCcHHHHHHHHHhhcc
Q 011191 378 LNSSHFQVAERALFLWNN 395 (491)
Q Consensus 378 l~S~hfqVAErAL~~w~N 395 (491)
- ..+-.-.+|-+.+|..
T Consensus 103 ~-~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 103 P-GDDKSKIVRVLNLWQK 119 (145)
T ss_dssp C-GGGHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHhcC
Confidence 4 5777778889999974
No 51
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=32.98 E-value=5.3e+02 Score=29.04 Aligned_cols=88 Identities=9% Similarity=0.187 Sum_probs=47.3
Q ss_pred chHhHHHHHHHHHHhccC-------cHHHHHHHhhhhCCC-CCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHH
Q 011191 306 YHQQLSYCITQFVEKDYK-------LADTVIRGLLKYWPL-TNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARC 377 (491)
Q Consensus 306 y~~qL~~ci~qf~~KDp~-------La~~vi~~llk~WP~-tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~c 377 (491)
..+.+..++..|.++.+. +.+.++..++.-.-. ..+.++..+|.-+..++..+. +.+...+..++..+..|
T Consensus 727 ~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~ 805 (1049)
T 3m1i_C 727 IKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFEC 805 (1049)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHH
Confidence 344455566666655431 123333334433211 122345778888888888775 34555555566666665
Q ss_pred h-----C--CCcHHHHHHHHHhhc
Q 011191 378 L-----N--SSHFQVAERALFLWN 394 (491)
Q Consensus 378 l-----~--S~hfqVAErAL~~w~ 394 (491)
. + +++..|.+....+..
T Consensus 806 ~~~~i~~~~~~~pd~~~~~f~ll~ 829 (1049)
T 3m1i_C 806 TLDMINKDFTEYPEHRVEFYKLLK 829 (1049)
T ss_dssp HHHHHSSCSSSSHHHHHHHHHHHH
T ss_pred HHHHHhcchhhCHHHHHHHHHHHH
Confidence 4 2 356777776655443
No 52
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=32.02 E-value=1e+02 Score=27.21 Aligned_cols=105 Identities=12% Similarity=0.229 Sum_probs=60.8
Q ss_pred HHHhhhhCCCCCChhHhHHHHHHHHHHHhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc------chhHHHH
Q 011191 329 IRGLLKYWPLTNCQKEVLFLGELEEVLEAT-QGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN------NEHIVSL 401 (491)
Q Consensus 329 i~~llk~WP~tns~KevlFL~ele~iLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~l 401 (491)
++.--+.=|...+.+ .|.+|...+ +.++|..||.-|.++|.. ...+..++-.||.+.. ++.++.-
T Consensus 10 VreAT~~d~wGP~~~------~m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~~ 81 (144)
T 1eyh_A 10 VREATSNDPWGPSSS------LMSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQQ 81 (144)
T ss_dssp HHHHTCSSSSCCCHH------HHHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhCCCCCCCCHH------HHHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHHH
Confidence 333333334444444 455666655 678899998888888863 2247788888886653 3444444
Q ss_pred Hhhccccchhhc-hHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 011191 402 IAQNRNVILPII-FEALEKNIQSHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 402 i~~n~~~i~Pii-~p~L~~~s~~HWn~~Vr~la~~vlk~l~e 442 (491)
+.++...|-.+= |.-+... -.-|...||..|..++.+|.|
T Consensus 82 ~~~~~~~i~~L~~F~y~d~~-g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 82 CKENMYAVQTLKDFQYVDRD-GKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHTHHHHHGGGGCCCBCTT-SCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHhhhccceeeCCC-ccchHHHHHHHHHHHHHHHCC
Confidence 433333221110 0000111 234788999999999999964
No 53
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=28.90 E-value=1.2e+02 Score=27.09 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=55.6
Q ss_pred HHHHHHHhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHhhc------chhHHHHHhhccccchhhchHHHHH---
Q 011191 350 ELEEVLEAT-QGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWN------NEHIVSLIAQNRNVILPIIFEALEK--- 419 (491)
Q Consensus 350 ele~iLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~i~Pii~p~L~~--- 419 (491)
.|.+|...+ +..+|..+|.-|.+||...- ..+....-.||.+.. .+.++..+.+|...|= .|..
T Consensus 31 ~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~-----~L~~F~~ 104 (150)
T 3onk_A 31 LMDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIR-----ILETFHY 104 (150)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHH-----GGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----hhhcccc
Confidence 455666654 67899999999999887321 136788888876653 3445444444433221 1211
Q ss_pred --HhhccccHHHHHHHHHHHHHHHH
Q 011191 420 --NIQSHWNQAVHGLTVNVRKMFLD 442 (491)
Q Consensus 420 --~s~~HWn~~Vr~la~~vlk~l~e 442 (491)
..-..|-..||..|..++.+|.|
T Consensus 105 ~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 105 IDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCchHHHHHHHHHHHHHHHcC
Confidence 11235888999999999999953
No 54
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=28.63 E-value=6.4e+02 Score=27.96 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcc
Q 011191 204 HSFVLKLLDLFDSEDPREREYLKTILHRIYGKF 236 (491)
Q Consensus 204 ~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf 236 (491)
..++..|+.++.|.|+..+...-.+|+.|...+
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 457888999999999988888888888888765
No 55
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=28.53 E-value=44 Score=24.81 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHH
Q 011191 269 EILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQ 316 (491)
Q Consensus 269 eIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~q 316 (491)
+++.|+|+.- -|.++||.++...|=..-..+.+..|||-+..++..
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 4678888764 468999999988888888888999999877766543
No 56
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=27.80 E-value=57 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.4
Q ss_pred CChHHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHH
Q 011191 75 VPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTL 114 (491)
Q Consensus 75 v~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~~L 114 (491)
+|++....-|..|+..|...-|| |++||..+
T Consensus 15 i~np~~r~~Fe~ki~~~~tE~q~---------k~iKr~II 45 (49)
T 3bbz_A 15 VANPQMKQAFEQRLAKASTEDAL---------NDIKRDII 45 (49)
T ss_dssp CCSHHHHHHHHHHHHTCCSHHHH---------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHH---------HHHHHHHH
Confidence 56777777899999999998888 67888765
No 57
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=24.10 E-value=7.5e+02 Score=27.23 Aligned_cols=215 Identities=6% Similarity=-0.013 Sum_probs=102.8
Q ss_pred CCcchHHHHHHHHHHHhcCCCChH--------------HHhccCCHHHHHHHhhhcCC--CChhHHHHHHHHHHHHhhcc
Q 011191 173 SWPHLQLVYELLLRYVVSSDTDTK--------------IAKRYIDHSFVLKLLDLFDS--EDPREREYLKTILHRIYGKF 236 (491)
Q Consensus 173 sWpHLqlVYeillrfv~s~~~d~~--------------~~k~~id~~Fi~~Ll~lfdS--eDprERd~LktiLhrIY~kf 236 (491)
.+.+|.-|.+.+++.+. +..... ....|+ ..++..|+.++++ -|.+++..+-..+-.|....
T Consensus 540 ~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 540 NPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ---CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 34788888888887662 322111 112333 2456677778887 46889999988888888754
Q ss_pred c--CchHHHHHHHHHHHH---Hhhhccc----CCcChHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHHH
Q 011191 237 M--VHRPFIRKAINNIFY---RFIYETE----RHSGIGELLEILGSIINGFALPM-------------KEEHKLFLVRAL 294 (491)
Q Consensus 237 ~--~~R~fIrk~i~n~f~---~fi~e~e----~h~GIaELLeIlgsIIngfa~PL-------------Keehk~fl~~vL 294 (491)
. ..-+++.+-+..++- +.+.... .-.-+.+.++.++.++.+..... .+--.. +..++
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-i~~~l 696 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQR-TMPIF 696 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHT-THHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHH-HHHHH
Confidence 2 223334433322222 2221111 11235667788888887654321 111111 11111
Q ss_pred hccCCC-CCcccchHhHHHHHHH---HHHhc-cCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChh-H----HH
Q 011191 295 LPLHKP-KPVAMYHQQLSYCITQ---FVEKD-YKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGA-E----FQ 364 (491)
Q Consensus 295 lPLhk~-~~~~~y~~qL~~ci~q---f~~KD-p~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~-~----f~ 364 (491)
.-+... ..-.........++.. .+.++ ..+.+.++.+|+...-.+ .+..||+-+..++.....+ + +.
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~~~~~~~~l~ 773 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFKDEGCKPLMQ 773 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC-----HHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCCcchHHHHH
Confidence 111111 0011112222222222 11122 225667777887666543 3478999999999877553 2 33
Q ss_pred hhHHHHHHHHHHHhCC-------CcHHHHHHHHHhh
Q 011191 365 RCMVPLFRQIARCLNS-------SHFQVAERALFLW 393 (491)
Q Consensus 365 ~i~~~lF~~ia~cl~S-------~hfqVAErAL~~w 393 (491)
.+..+++..+-..+++ .+..|++..+.+.
T Consensus 774 ~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 774 QLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 3334444433333333 2556666665554
No 58
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=23.29 E-value=2.9e+02 Score=26.43 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHhccCcHHHHHHHhhhhCCCCCChhH--hHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 011191 315 TQFVEKDYKLADTVIRGLLKYWPLTNCQKE--VLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFL 392 (491)
Q Consensus 315 ~qf~~KDp~La~~vi~~llk~WP~tns~Ke--vlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~ 392 (491)
..-+.+||.|.+.++++++-+ .+++.-+ -...+.|+++... .+ .+...+..-|...+......|..+|+..
T Consensus 41 el~~~~dp~ll~~~l~~il~~--~~~~~~~vrk~~~~Fi~e~~~~-k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 41 ETVLGSCAELAEEFLESVLSL--AHDSNMEVRKQVVAFVEQVCKV-KV----ELLPHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp HHHTTTTGGGHHHHHHHHHGG--GGCSCHHHHHHHHHHHHHHHHH-CG----GGHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHccCHhHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334678999999999999986 3333222 2233444444421 11 2333444444455556666666666554
Q ss_pred hc
Q 011191 393 WN 394 (491)
Q Consensus 393 w~ 394 (491)
..
T Consensus 114 ~~ 115 (257)
T 3gs3_A 114 CG 115 (257)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 59
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=21.97 E-value=99 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=38.7
Q ss_pred hccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHh
Q 011191 320 KDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQR 365 (491)
Q Consensus 320 KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~ 365 (491)
..--+...-|.+|..-=+...+..||.|+.|+..++..++.+-|..
T Consensus 17 e~rwi~~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d 62 (92)
T 1xl3_C 17 DXRWAGIHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSD 62 (92)
T ss_dssp HSTTCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSC
T ss_pred HhcccCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCC
Confidence 3445666778888888899999999999999999999998877743
No 60
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=20.57 E-value=6.9e+02 Score=25.46 Aligned_cols=195 Identities=11% Similarity=0.091 Sum_probs=94.1
Q ss_pred ChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhcccCchHHHHHH-HHHHHHHhhhcccCCcChHHHH----
Q 011191 194 DTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKA-INNIFYRFIYETERHSGIGELL---- 268 (491)
Q Consensus 194 d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~kf~~~R~fIrk~-i~n~f~~fi~e~e~h~GIaELL---- 268 (491)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..|... .-..+...+...........++
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 33344455666678889999999999999999999998877555556555432 2234445443322222222222
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhHHHHHHHHHHhc---------cCcHHHHHHHhhhhCCCC
Q 011191 269 EILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKD---------YKLADTVIRGLLKYWPLT 339 (491)
Q Consensus 269 eIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL~~ci~qf~~KD---------p~La~~vi~~llk~WP~t 339 (491)
..+..+..|-..+.......=...+|..|.....-.. ...-..++......+ ......++.. ++ ..
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l-L~---~~ 305 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL-LG---AT 305 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH-HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH-HT---CS
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH-HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH-hc---CC
Confidence 3334444443222222322223455566655543221 111222332222222 2233333332 22 22
Q ss_pred CChhHhHHHHHHHHHHHhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q 011191 340 NCQKEVLFLGELEEVLEATQGAEFQRCM-VPLFRQIARCLNSSHFQVAERALFLWN 394 (491)
Q Consensus 340 ns~KevlFL~ele~iLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~ 394 (491)
+..-+..-+.-|..|... +++.-..+. ......|..++.|++-.|-+.|+..+.
T Consensus 306 ~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322222233334443321 222222211 123445667788999888777765543
No 61
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.33 E-value=4.5e+02 Score=23.20 Aligned_cols=77 Identities=16% Similarity=0.042 Sum_probs=52.5
Q ss_pred HHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHH-----hhHHHHHHHHHHHhCCCcHHHHHH
Q 011191 314 ITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQ-----RCMVPLFRQIARCLNSSHFQVAER 388 (491)
Q Consensus 314 i~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~-----~i~~~lF~~ia~cl~S~hfqVAEr 388 (491)
|...+..++.-+..+++.|.|.=-..|+.-++.-|..++.++..|.+.--. .++..+.+.+. ...|.+|-++
T Consensus 39 icD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~---~~~~~~Vk~k 115 (163)
T 1x5b_A 39 ICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK---NKAHPKVCEK 115 (163)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH---TTCCHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc---cCCCHHHHHH
Confidence 445667777778888888876655678889999999999999888763221 22223322222 3478899999
Q ss_pred HHHhh
Q 011191 389 ALFLW 393 (491)
Q Consensus 389 AL~~w 393 (491)
++.+.
T Consensus 116 il~li 120 (163)
T 1x5b_A 116 LKSLM 120 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
Done!