Your job contains 1 sequence.
>011192
MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQK
IEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDMPDLSRQL
WGKSLQNDVKMQNHEARVNYGQKSLVPVTEAQGSEVAACKEANTRAHFDEDTELETHRSD
VILTSEVCNVPVNSPRQVIDFMSAFNNHKPPSNNGASRFDSSPQLDLSLRRTHPDGFENQ
VERKFILRHSNASAFTRYTNKPSEPQHSSLSGVCNQQKEFETDSEKNFSNILTACNSYTP
AATLSTQRSVNSLATGHSKQSELAVSYPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLED
LGHISPATDQSASSSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAESKNEEGLFPS
NGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLE
SENHSGNISDG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011192
(491 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 227 6.1e-39 3
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 214 2.4e-32 3
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 178 1.3e-21 2
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 227 3.5e-20 2
TAIR|locus:2143206 - symbol:CO "CONSTANS" species:3702 "A... 119 4.7e-07 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 149 5.1e-07 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 131 7.0e-07 3
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 137 3.5e-06 1
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 146 4.5e-06 2
TAIR|locus:2007482 - symbol:AT1G07050 "AT1G07050" species... 121 6.2e-06 2
TAIR|locus:2031180 - symbol:BBX15 "B-box domain protein 1... 134 1.0e-05 1
TAIR|locus:2010504 - symbol:BBX13 "B-box domain protein 1... 134 1.1e-05 1
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 133 1.1e-05 2
TAIR|locus:2143221 - symbol:COL1 "CONSTANS-like 1" specie... 130 1.7e-05 2
TAIR|locus:2028421 - symbol:BBX17 "B-box domain protein 1... 130 3.1e-05 2
TAIR|locus:2201277 - symbol:BBX14 "B-box domain protein 1... 132 4.3e-05 2
TAIR|locus:2051104 - symbol:BBX12 "B-box domain protein 1... 128 4.4e-05 1
TAIR|locus:2031581 - symbol:BBX16 "B-box domain protein 1... 127 5.4e-05 1
TAIR|locus:2177911 - symbol:AT5G41380 "AT5G41380" species... 124 7.1e-05 1
TAIR|locus:2051099 - symbol:AT2G33350 "AT2G33350" species... 126 7.5e-05 1
TAIR|locus:2043288 - symbol:AT2G47890 species:3702 "Arabi... 124 8.4e-05 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 122 0.00011 1
TAIR|locus:2145698 - symbol:AT5G14370 species:3702 "Arabi... 123 0.00011 1
TAIR|locus:2018344 - symbol:AT1G04500 "AT1G04500" species... 116 0.00012 3
TAIR|locus:2175564 - symbol:CIA2 "chloroplast import appa... 126 0.00020 2
TAIR|locus:2091082 - symbol:COL9 "CONSTANS-like 9" specie... 119 0.00021 2
UNIPROTKB|Q9FDX8 - symbol:HD1 "Zinc finger protein HD1" s... 125 0.00029 2
UNIPROTKB|Q9FE92 - symbol:Hd1 "Heading day 1" species:453... 125 0.00032 2
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 117 0.00053 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 117 0.00053 1
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 227 (85.0 bits), Expect = 6.1e-39, Sum P(3) = 6.1e-39
Identities = 51/82 (62%), Positives = 62/82 (75%)
Query: 394 GSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYES 453
GS S + + AG++++ K +E RS QREAAL KFRLKRKDRC+DKKVRY+S
Sbjct: 384 GSQSTNEGI-AGQSSSTEKPKEEESAKQRWSRS-QREAALMKFRLKRKDRCFDKKVRYQS 441
Query: 454 RKKLAEQRPRVKGQFVRQVHSE 475
RKKLAEQRPRVKGQFVR V+S+
Sbjct: 442 RKKLAEQRPRVKGQFVRTVNSD 463
Score = 195 (73.7 bits), Expect = 6.1e-39, Sum P(3) = 6.1e-39
Identities = 39/76 (51%), Positives = 48/76 (63%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGN-ETQDESVGQQ 59
MSSQDS+ V KCM+RGAADYL+KP+R+NEL+NLWQHVWRR + Q Q
Sbjct: 118 MSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRRLTLRDDPTAHAQSLPASQH 177
Query: 60 KIEATSENDAASNHSS 75
+E T E S + S
Sbjct: 178 NLEDTDETCEDSRYHS 193
Score = 104 (41.7 bits), Expect = 6.1e-39, Sum P(3) = 6.1e-39
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 223 PQLDLSLRRTHPDGFENQVERKFI-LRHSNASAFTRYT-NKPSEPQHSSLSGVCNQQKEF 280
P+L LSL+R+ FENQ E K L S+ASAF+R+ +K +E +L + + +
Sbjct: 256 PELGLSLKRSCSVSFENQDESKHQKLSLSDASAFSRFEESKSAEKAVVALEESTSGEPKT 315
Query: 281 ETDSEKNFSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELAVSYPQQRPCPVPV 337
T+S + + + S A T S Q ++ S + Q + Q++ P+PV
Sbjct: 316 PTESHEKLRKVTSDQGS---ATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPV 369
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 214 (80.4 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 58/124 (46%), Positives = 75/124 (60%)
Query: 378 NGAVSRLN--SMG-YGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNG----NL----RS 426
NG+VS S G YGS+ G N+ + + A ++ N +G +G NL +
Sbjct: 607 NGSVSGSGHGSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKI 666
Query: 427 IQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHSG 486
QREAAL KFR KRK+RC+ KKVRY+SRKKLAEQRPRV+GQFVR+ + T +N
Sbjct: 667 SQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAAT----DDNDIK 722
Query: 487 NISD 490
NI D
Sbjct: 723 NIED 726
Score = 213 (80.0 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 77/251 (30%), Positives = 122/251 (48%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR-QSSMVSGNET----QDES 55
MSS DS+ V+KC+ +GA D+LVKP+R+NEL+ LWQHVWRR QSS SG+E+ +S
Sbjct: 159 MSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKS 218
Query: 56 VGQQKIEATSENDAASNHS-SGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDMP 114
V + I+ + ++ +S+ + +G + S G GS QSS TK ++ V+D P
Sbjct: 219 VKSKSIKKSDQDSGSSDENENGSIGLNASDGS--SDGSGAQSSWTK-----KAVDVDDSP 271
Query: 115 DLSRQLWGKSLQNDVKMQNHEARVNYGQKSLVPVTEAQGSEVAACKEANTRAHFDEDTEL 174
+ LW + + + A+V + P + VA E T+ H D+ ++
Sbjct: 272 R-AVSLWDR-------VDSTCAQVVHSNPEF-PSNQL----VAPPAEKETQEHDDKFEDV 318
Query: 175 ETHRSDVILTSEVCNV---PVNSP-RQVIDFMSAFNNHKPPSNNGASRFDSSPQLDLSL- 229
R I C++ P + P + M N+ + S+ + P LDLS
Sbjct: 319 TMGRDLEISIRRNCDLALEPKDEPLSKTTGIMRQDNSFEKSSSKWKMKVGKGP-LDLSSE 377
Query: 230 ----RRTHPDG 236
++ H DG
Sbjct: 378 SPSSKQMHEDG 388
Score = 49 (22.3 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 230 RRTHPDGFENQVERKFILRHSNASAFTRY 258
R T DG + +R +LR S SAF+RY
Sbjct: 439 RGTKDDGTLVRDDRN-VLRRSEGSAFSRY 466
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 178 (67.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 428 QREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHSGN 487
+RE AL KFR KR RC+DKK+RY +RK+LAE+RPRVKGQFVR+++ + L + S +
Sbjct: 532 RREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQPDSAD 591
Query: 488 ISD 490
D
Sbjct: 592 YDD 594
Score = 154 (59.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 28/42 (66%), Positives = 32/42 (76%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42
MS QD V V KC+ GAADYLVKP+R NEL NLW H+WRR+
Sbjct: 100 MSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRR 141
Score = 49 (22.3 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 51/243 (20%), Positives = 92/243 (37%)
Query: 261 KPSEPQHSSLSGVCNQQKEFETDSEKNFSNI--LTACNSYTPA-ATLSTQRSVNSLATGH 317
+ + PQ +LS +Q+ E+ + + L A + T + A + + ++ LA H
Sbjct: 184 RSTNPQRGNLS---HQENEWSVATAPVHARDGGLGADGTATSSLAVTAIEPPLDHLAGSH 240
Query: 318 SKQSELAVSYPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPATDQSASSSFC 377
+ + + Q P +K+ ++ + K L G P D + S
Sbjct: 241 HEPMKRNSNPAQFSSAPKKSRLKIGESSAFFTYV--KSTVLRTNGQDPPLVDGNGSLHLH 298
Query: 378 NGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAESK--NEEGLFPS--NGNLRSIQREAAL 433
G + + ++ G N N Q A RA +S G P NGN A
Sbjct: 299 RGLAEKFQVV---ASEGIN-NTKQ--ARRATPKSTVLRTNGQDPPLVNGNGSHHLHRGAA 352
Query: 434 NKFRLKRKDRCYDKKVRYESR--KKLAEQRPRVKG--QFVRQVH-SETLPLESENHSGNI 488
KF++ + + K + SR ++ Q ++ + + S TLP E+H N
Sbjct: 353 EKFQVVASEGINNTKQAHRSRGTEQYHSQGETLQNGASYPHSLERSRTLPTSMESHGRNY 412
Query: 489 SDG 491
+G
Sbjct: 413 QEG 415
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 227 (85.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 51/82 (62%), Positives = 62/82 (75%)
Query: 394 GSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYES 453
GS S + + AG++++ K +E RS QREAAL KFRLKRKDRC+DKKVRY+S
Sbjct: 99 GSQSTNEGI-AGQSSSTEKPKEEESAKQRWSRS-QREAALMKFRLKRKDRCFDKKVRYQS 156
Query: 454 RKKLAEQRPRVKGQFVRQVHSE 475
RKKLAEQRPRVKGQFVR V+S+
Sbjct: 157 RKKLAEQRPRVKGQFVRTVNSD 178
Score = 40 (19.1 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 260 NKPSEPQHSSLSGVCNQQKEFETDSEKNFSNILTACNSYTPAATLSTQRSVNSLATGHSK 319
+K +E +L + + + T+S + + + S T T S Q ++ S +
Sbjct: 10 SKSAEKAVVALEESTSGEPKTPTESHEKLRKVRSDQGSST---TSSNQENIGSSSVSFRN 66
Query: 320 QSELAVSYPQQRPCPVPV 337
Q + Q++ P+PV
Sbjct: 67 QVLQSTVTNQKQDSPIPV 84
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 119 (46.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 424 LRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFV-RQVHSE 475
L + REA + ++R KRK R ++K +RY SRK AE RPRV G+F R++ +E
Sbjct: 301 LSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKREIEAE 353
Score = 70 (29.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 53/254 (20%), Positives = 102/254 (40%)
Query: 65 SENDAASNHSSGYM--ACIQSKGEFIEKGSDEQSSCTKPDFEAESAHV-----EDMPDLS 117
S N AS H + +C ++ F+ + +D+ S CT D E SA+ + +P L
Sbjct: 49 SANRVASRHKRVRVCESCERAPAAFLCE-ADDASLCTACDSEVHSANPLARRHQRVPILP 107
Query: 118 RQLWGKSLQNDVKMQNH-EARVNYGQKSLVPVTEAQGSEVAA-CKEANTRAHFDEDTELE 175
+ G S + + E + +K LV V + +G E KE + + D
Sbjct: 108 --ISGNSFSSMTTTHHQSEKTMTDPEKRLV-VDQEEGEEGDKDAKEVASWLFPNSDKNNN 164
Query: 176 THRSDVILTSEVCN-VPVNSPRQVIDFMSAFNNHKPPSNNGASRFDSSPQLDLSLRRTHP 234
+ ++ + E N V NS F ++ H+ + + + + L L +
Sbjct: 165 NQNNGLLFSDEYLNLVDYNSSMDY-KFTGEYSQHQQNCSVPQTSYGGDRVVPLKLEESRG 223
Query: 235 DGFENQVERKFILRHSNASAFTRYTNKPSEPQHSSLSGVCNQQKEFETDS-EKNFSNILT 293
NQ +F +++ ++ T Y + S ++ +S + ET ++ + + T
Sbjct: 224 HQCHNQQNFQFNIKYGSSG--THYNDNGSINHNAYISSM-------ETGVVPESTACVTT 274
Query: 294 ACNSYTPAATLSTQ 307
A + TP T+ Q
Sbjct: 275 ASHPRTPKGTVEQQ 288
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 149 (57.5 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 54/179 (30%), Positives = 78/179 (43%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQD--ESVGQ 58
MS+ DS S V K + GA DYL+KPVR L+N+WQHV R++ S S E E G+
Sbjct: 115 MSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGE 174
Query: 59 QKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQSSCTK-PDFEAESA---HVEDMP 114
++ + + S G A + + +G++ +SS K D E E ED
Sbjct: 175 RQQQQHRGGGGGAAVSGGEDA-VDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDAS 233
Query: 115 DLS--RQLWGKSLQNDVKMQNHEARVNY-GQKSLVPVTEAQGSEVAACKEANTRAHFDE 170
+L R +W L Q A VN G + VP + V N +H +
Sbjct: 234 NLKKPRVVWSVELH-----QQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQK 287
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 131 (51.2 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 424 LRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 475
L ++REA + ++R K+K R +DK +RY SRK AE RPR+KG+F +++ +E
Sbjct: 273 LTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETE 324
Score = 46 (21.3 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 127 NDVKMQNHEARVNYGQKSLVPVTEAQGSEVAACKEANTRAHFDE 170
N +K NH A V+ S+VP E+ S++ T+ D+
Sbjct: 220 NSLKDLNHSASVSSMDISVVP--ESTASDITVQHPRTTKETIDQ 261
Score = 44 (20.5 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 67 NDAASNHSSGYM--ACIQSKGEFIEKGSDEQSSCTKPDFEAESAH 109
N AS H + +C + F+ K +D S CT D E SA+
Sbjct: 47 NRVASRHERVRVCQSCESAPAAFLCK-ADAASLCTACDAEIHSAN 90
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 137 (53.3 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 46/141 (32%), Positives = 68/141 (48%)
Query: 335 VPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPATDQSASSSFCNGAVSRLNSMGYGSACG 394
VPV K + DH D +S T S S S +VS +S+ YG
Sbjct: 204 VPVQTKTEPL--PLTNNDHCFDIDFCRSKLSAFTYPSQSVSH---SVST-SSIEYGVVPD 257
Query: 395 SNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESR 454
N+N + R+ S G + S+ REA + ++R KRK+R ++K +RY SR
Sbjct: 258 GNTNN---SVNRSTITSSTTGG----DHQASSMDREARVLRYREKRKNRKFEKTIRYASR 310
Query: 455 KKLAEQRPRVKGQFVRQVHSE 475
K AE RPR+KG+F ++ +E
Sbjct: 311 KAYAESRPRIKGRFAKRTETE 331
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 146 (56.5 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS-----SMVSGNETQD-- 53
MS+ DS S V K + GA DYL+KPVR L+N+WQHV R++ S SG +D
Sbjct: 106 MSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTG 165
Query: 54 -ESVGQQKIEATSENDAAS-NHSSGYMACIQSKGEFIEKGSDEQ--SSCTKP 101
+ QQ+ ++N+++S N +G + + + E ++G D++ SS KP
Sbjct: 166 GDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKP 217
Score = 39 (18.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 122 GKSLQNDVKMQNHEARVNYGQKSLVPVTEAQGSEVAACKEANTRAH 167
G++LQ+ + H V + V V + +E C ANT H
Sbjct: 583 GQNLQSPSRNLYHLNHV-FMDGGSVRVKSERVAETVTCPPANTLFH 627
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 121 (47.7 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 21/47 (44%), Positives = 38/47 (80%)
Query: 425 RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 471
R+++REA++ +++ KR+ R + KK+RY+ RK A++RPR KG+FV++
Sbjct: 147 RNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
Score = 41 (19.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 50 ETQDESVGQQKIEATSENDAAS 71
E +DE VG+++ ++++ + +S
Sbjct: 65 EDEDEDVGEEEKRSSTDQEGSS 86
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 134 (52.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 405 GRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRV 464
G + + + G PS+G REA ++++R KR+ R + KK+RYE RK AE+RPR+
Sbjct: 338 GESTHQKQYVGGCLPSSG-FGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRM 396
Query: 465 KGQFVRQ 471
KG+FV++
Sbjct: 397 KGRFVKR 403
>TAIR|locus:2010504 [details] [associations]
symbol:BBX13 "B-box domain protein 13" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AC069471
HOGENOM:HOG000243233 ProtClustDB:CLSN2713949 EMBL:AY037206
EMBL:BT002681 IPI:IPI00538865 PIR:B86406 RefSeq:NP_174126.1
UniGene:At.19754 ProteinModelPortal:Q9C7E8 SMR:Q9C7E8 IntAct:Q9C7E8
STRING:Q9C7E8 PRIDE:Q9C7E8 EnsemblPlants:AT1G28050.1 GeneID:839698
KEGG:ath:AT1G28050 TAIR:At1g28050 eggNOG:NOG245106
InParanoid:Q9C7E8 OMA:SCGRYKQ PhylomeDB:Q9C7E8
Genevestigator:Q9C7E8 GermOnline:AT1G28050 Uniprot:Q9C7E8
Length = 433
Score = 134 (52.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 389 YGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSI--QREAALNKFRLKRKDRCYD 446
+GS GSNS+ D A S L + +L + R A+ +++ KRK R YD
Sbjct: 343 FGSEKGSNSSSDLHFTEHIAGTSCKTTRLVATKADLERLAQNRGDAMQRYKEKRKTRRYD 402
Query: 447 KKVRYESRKKLAEQRPRVKGQFVR 470
K +RYESRK A+ R RV+G+FV+
Sbjct: 403 KTIRYESRKARADTRLRVRGRFVK 426
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 133 (51.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 404 AGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPR 463
+G AE N E P+ L +REA + ++R KRK+R ++K +RY SRK AE RPR
Sbjct: 207 SGGVTAEMTNTET--PAV-QLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPR 263
Query: 464 VKGQFVRQVHSETLPLESENHSGNI 488
+KG+F ++ S EN G++
Sbjct: 264 IKGRFAKRTDSR------ENDGGDV 282
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 60 KIEATSENDAASN 72
KIE TSE +++ N
Sbjct: 144 KIEVTSEENSSGN 156
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 130 (50.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 378 NGAVSRL---NSMGYGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALN 434
NG++S + +SM G S ++ D + + ++ ++ +P L REA +
Sbjct: 233 NGSLSHMVNVSSMDLGVVPESTTS-DATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVL 291
Query: 435 KFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 471
++R K+K R ++K +RY SRK AE+RPR+KG+F ++
Sbjct: 292 RYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 67 NDAASNHSSGYM--ACIQSKGEFIEKGSDEQSSCTKPDFEAESAH 109
N AS H + +C ++ F K +D S CT D E SA+
Sbjct: 43 NRLASRHERVRVCQSCERAPAAFFCK-ADAASLCTTCDSEIHSAN 86
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 130 (50.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 26/48 (54%), Positives = 40/48 (83%)
Query: 424 LRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 471
+RS +REA + ++R KRK+R ++KK+RYE RK A++RPR+KG+FVR+
Sbjct: 274 VRS-EREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320
Score = 38 (18.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 342 NSTNQAMHKL--DHKLDSLEDLGHISPATDQSASSSFCNG 379
N T + + + + D++EDL + D++ + C G
Sbjct: 163 NGTEETTKQFNFEEEADTMEDLYYNGEEEDKTDGAEACPG 202
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 132 (51.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 403 TAGRAAAESKNEE---GLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAE 459
T G + AE+ + GL G+ REA ++++R KR+ R + KK+RYE RK AE
Sbjct: 328 TMGESGAEAHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAE 387
Query: 460 QRPRVKGQFVRQ 471
+RPR+KG+FV++
Sbjct: 388 KRPRMKGRFVKR 399
Score = 38 (18.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 46 VSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQSSCTK 100
+ E ++E V +++ E D S + K F E DE+ K
Sbjct: 212 IEKEEVEEEGVVTREVHDQDEGDETSPFEISFDYEYTHKTTFDEGEEDEKEDVMK 266
>TAIR|locus:2051104 [details] [associations]
symbol:BBX12 "B-box domain protein 12" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC002332 EMBL:BT002067 EMBL:AY128321
EMBL:BT006572 IPI:IPI00527026 IPI:IPI00539934 PIR:C84746
RefSeq:NP_850211.1 RefSeq:NP_973589.1 UniGene:At.43493
IntAct:O22800 STRING:O22800 EnsemblPlants:AT2G33500.1 GeneID:817915
KEGG:ath:AT2G33500 TAIR:At2g33500 eggNOG:NOG269245
HOGENOM:HOG000243233 InParanoid:O22800 OMA:ATHERSA PhylomeDB:O22800
ProtClustDB:CLSN2713949 Genevestigator:O22800 Uniprot:O22800
Length = 402
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 48/173 (27%), Positives = 74/173 (42%)
Query: 307 QRSVNSLATGHSKQS---ELAVSYPQQRPCPVPVSVKVNSTNQAMH-KLDHKLDSLEDLG 362
Q + + +TG + Q L S P PV + N H K D + ++
Sbjct: 226 QWNATNHSTGQNTQIWDFNLGQSRNPDEPSPVETKGSTFTFNNVTHLKNDTRTTNMNAFK 285
Query: 363 HISPATDQSASSSFCNGAVSRLNSM--GYGSACGSNSNLDQVTAGRAAAESKNEEGLFP- 419
D S+S S+ N++ S SN + A S L
Sbjct: 286 ESYQQEDSVHSTSTKGQETSKSNNIPAAIHSHKSSNDSCGLHCTEHIAITSNRATRLVAV 345
Query: 420 SNGNLRSI--QREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVR 470
+N +L + R+ A+ +++ K+K R YDK +RYE+RK AE R RVKG+FV+
Sbjct: 346 TNADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 428 QREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 471
+REA + +++ KR+ R + KK+RYE RK AEQRPR+KG+FV++
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 124 (48.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 40/171 (23%), Positives = 80/171 (46%)
Query: 316 GHSKQSELAVSYP--QQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPATDQSAS 373
GH++ + +A SY + + S NS ++ + + D ++S S
Sbjct: 107 GHNQAATMARSYSTIENSGRYMQRSFSSNSVEGKQTQVPFNIPMM-DSSNLSYNNLSSPE 165
Query: 374 SSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAAL 433
++F + + R+ S G +N++ + + +EE F G + +R+ +
Sbjct: 166 NAFFSSQMRRVYSTG-----DLQNNMEMQRSSENSTMPFSEEQNFKV-GRYSAEERKEKI 219
Query: 434 NKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLP-LESEN 483
+K+R KR R + K ++Y RK LA+ RPR++G+F R +P +E ++
Sbjct: 220 SKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEVVEIPNIEDDD 270
>TAIR|locus:2051099 [details] [associations]
symbol:AT2G33350 "AT2G33350" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 ProtClustDB:CLSN2680683 EMBL:AY600556 IPI:IPI00520380
RefSeq:NP_180893.2 UniGene:At.50819 EnsemblPlants:AT2G33350.1
GeneID:817898 KEGG:ath:AT2G33350 TAIR:At2g33350 InParanoid:Q6E267
OMA:GSEINKP PhylomeDB:Q6E267 Genevestigator:Q6E267 Uniprot:Q6E267
Length = 410
Score = 126 (49.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 77/351 (21%), Positives = 141/351 (40%)
Query: 139 NYGQKSLVPVTEAQGSEVAA-CKEANTRAHFDEDTELETHRSDVILTSEVCNVPVNSPRQ 197
++ Q S+ +T +++ C + F++ +E+ T S+++ S + N+
Sbjct: 10 SHDQLSIDDITSPLSAQIFDFCDPQLFQETFNQSSEV-TSTSNILEKSGSFHSNTNTTTT 68
Query: 198 VIDFMSAFNNHKPPSNNGASRFDSSPQLDLSLRRTHPDGFENQVERKFILRHSNAS--AF 255
++ NN+ + N D + DLS+ + FEN + S+
Sbjct: 69 T---ENSNNNNNNKNTNLQDDEDDNNNTDLSIIFDSQEDFENDITASIDFSSSSLQYPVI 125
Query: 256 TRYTNKPSEPQHSSLSG--VCNQQKEFETDSEKNFSNILTACNSYTPAATLSTQRSVNSL 313
S+ Q SG V +Q + S L+A +S P S + L
Sbjct: 126 DHLLTAISQDQFDFSSGLQVIHQPPNISYSGDP-LS--LSAISSLAPPPLQSGVFEEDCL 182
Query: 314 ATGHSKQSEL--AVSYPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLG--HISPATD 369
++ S L + S+ + P +S + S + L + ++ H P D
Sbjct: 183 SSVPSYNLGLNPSCSFFRSSGLPAYMSTGLLSAESNLGYLPGNIHVGSEINKPH-DPLMD 241
Query: 370 QSASSS--FCNGAVSRL-NSMGYGSACGSNS-NLDQVTAGRA--AAESKNEEGLFPSN-- 421
A + FC ++ R+ N A G + N + +A A + GL S
Sbjct: 242 FQADNGGFFCPDSIKRMFNPEDLQKALGGGAENQSHLVTPQAHPALGPVDINGLEDSTLN 301
Query: 422 --GNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVR 470
G L QR+ + ++ KR +R ++KK++Y RK LA+ RPRV+G+F +
Sbjct: 302 KVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 352
>TAIR|locus:2043288 [details] [associations]
symbol:AT2G47890 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC005309 EMBL:AC006072 EMBL:BT023413 IPI:IPI00543399
PIR:G84920 RefSeq:NP_182310.1 UniGene:At.12948 STRING:O82256
EnsemblPlants:AT2G47890.1 GeneID:819401 KEGG:ath:AT2G47890
TAIR:At2g47890 eggNOG:NOG271369 HOGENOM:HOG000240051
InParanoid:O82256 OMA:CSRHARA PhylomeDB:O82256
ProtClustDB:CLSN2683730 Genevestigator:O82256 Uniprot:O82256
Length = 332
Score = 124 (48.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 21/47 (44%), Positives = 36/47 (76%)
Query: 424 LRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVR 470
+ S++R +AL++++ K+K R Y+K +RYESRK AE R R++G+F +
Sbjct: 282 INSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 28/101 (27%), Positives = 56/101 (55%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV---WRRQSSMVSGNETQDESVG 57
+S DSV +V K M+ GAADYL+KP+R +LR +++H+ R + S+V+G + E
Sbjct: 120 ISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKKMRERRSVVTG---EAEKAA 176
Query: 58 QQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQSSC 98
+K + ++ + + S +C++++ ++ +C
Sbjct: 177 GEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDRHDHNDRAC 217
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 429 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHS 474
REA+L +++ KR++R + K++RY+ RK AE+RPRVKG+FV++ S
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKREDS 339
>TAIR|locus:2018344 [details] [associations]
symbol:AT1G04500 "AT1G04500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:DQ446226 EMBL:AB493431
IPI:IPI00533670 RefSeq:NP_171944.2 UniGene:At.42446
EnsemblPlants:AT1G04500.1 GeneID:839510 KEGG:ath:AT1G04500
TAIR:At1g04500 HOGENOM:HOG000239716 InParanoid:Q1PFY7 OMA:SPSCSFL
PhylomeDB:Q1PFY7 ProtClustDB:CLSN2680683 Genevestigator:Q1PFY7
Uniprot:Q1PFY7
Length = 386
Score = 116 (45.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 418 FPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVR 470
F G L + QR+ ++++ KR +R + KK++Y RK LA+ RPRV+G+F +
Sbjct: 277 FNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAK 329
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 206 NNHKPPSNNGASRF--DSSPQLDLSLRRTHPDGFENQV 241
NN SN+G+++ D++ DLS+ D F+N +
Sbjct: 60 NNFPDKSNSGSNQDHEDNNDNADLSIIFDSQDDFDNDI 97
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 53 DESVGQQKIEATSENDAASNHSSGYM 78
D + Q+ TSE +ASN GY+
Sbjct: 30 DSQLFQETFNQTSEVTSASN-GCGYV 54
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 126 (49.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 429 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSET 476
REA++ +++ KR+ R + KK+RY+ RK A+QRPR+KG+FVR+ + T
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPNEST 430
Score = 39 (18.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 102 DFEAESAHVEDMPDLSRQLWGKSLQNDVKMQNHEARV 138
+F+AES ED+ + + G ++++ +E+RV
Sbjct: 166 EFDAESILDEDIEEGIDSIMGTVVESNSNSGIYESRV 202
>TAIR|locus:2091082 [details] [associations]
symbol:COL9 "CONSTANS-like 9" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0007623 GO:GO:0008270 GO:GO:0003700
EMBL:AC009176 eggNOG:NOG248444 HOGENOM:HOG000116529
ProtClustDB:CLSN2684850 EMBL:AY049290 IPI:IPI00522412
RefSeq:NP_001030659.1 RefSeq:NP_001118599.1 RefSeq:NP_187422.1
RefSeq:NP_974250.1 UniGene:At.18337 STRING:Q9SSE5 PRIDE:Q9SSE5
EnsemblPlants:AT3G07650.1 EnsemblPlants:AT3G07650.2
EnsemblPlants:AT3G07650.3 EnsemblPlants:AT3G07650.4 GeneID:819956
KEGG:ath:AT3G07650 TAIR:At3g07650 InParanoid:Q9SSE5 OMA:TSHIQTE
PhylomeDB:Q9SSE5 Genevestigator:Q9SSE5 GermOnline:AT3G07650
GO:GO:0048579 Uniprot:Q9SSE5
Length = 372
Score = 119 (46.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 39/133 (29%), Positives = 66/133 (49%)
Query: 351 LDHKLDSLEDLGH-ISPA--TDQSASSS----FCNGAVSRLNSMGYGSACGSNSNLDQVT 403
L HK + + G+ + PA D SS C + +++ + G +S D
Sbjct: 224 LFHKHQTAPEGGNSVQPAGSNDSFMSSKTEPIICFASKPAHSNISFSGVTGESSAGDFQE 283
Query: 404 AGRAAA-ESKNEEGLFP-----SNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKL 457
G +++ + E +P +N S+ R A+ +++ K+K R +DK+VRY SRK
Sbjct: 284 CGASSSIQLSGEPPWYPPTLQDNNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKAR 343
Query: 458 AEQRPRVKGQFVR 470
A+ R RVKG+FV+
Sbjct: 344 ADVRRRVKGRFVK 356
Score = 44 (20.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 183 LTSEVCNVPVNSPRQVIDFMSAFNN-----HKPPSNNGASRFDSSPQ 224
L E CN + R V + +S N H +NN +S +SPQ
Sbjct: 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQ 92
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 125 (49.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 426 SIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHS 485
S+ REA + ++R K+K R ++K +RYE+RK AE RPR+KG+F ++ + + ++ +
Sbjct: 323 SMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQ-IEVDQMFST 381
Query: 486 GNISDG 491
+SDG
Sbjct: 382 AALSDG 387
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 16/59 (27%), Positives = 21/59 (35%)
Query: 41 RQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQSSCT 99
RQ M E Q + QK A E S M Q + G+D+ +S T
Sbjct: 205 RQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYGVVGADQAASMT 263
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 125 (49.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 426 SIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHS 485
S+ REA + ++R K+K R ++K +RYE+RK AE RPR+KG+F ++ + + ++ +
Sbjct: 335 SMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQ-IEVDQMFST 393
Query: 486 GNISDG 491
+SDG
Sbjct: 394 AALSDG 399
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 16/59 (27%), Positives = 21/59 (35%)
Query: 41 RQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQSSCT 99
RQ M E Q + QK A E S M Q + G+D+ +S T
Sbjct: 217 RQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYGVVGADQAASMT 275
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42
M+S +TV K + GA D+L+KPVR EL N+WQH++R+Q
Sbjct: 89 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQ 130
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42
M+S +TV K + GA D+L+KPVR EL N+WQH++R+Q
Sbjct: 89 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQ 130
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.124 0.351 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 491 491 0.00082 119 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 614 (65 KB)
Total size of DFA: 286 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.73u 0.48s 53.21t Elapsed: 00:00:04
Total cpu time: 52.73u 0.48s 53.21t Elapsed: 00:00:04
Start: Tue May 21 02:31:47 2013 End: Tue May 21 02:31:51 2013