Query 011192
Match_columns 491
No_of_seqs 261 out of 528
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 22:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.7 7.6E-19 1.7E-23 132.5 3.1 45 429-473 1-45 (45)
2 COG4753 Response regulator con 98.3 5E-07 1.1E-11 97.1 4.4 45 1-45 82-126 (475)
3 COG4566 TtrR Response regulato 97.6 3.9E-05 8.5E-10 74.4 3.4 44 1-44 82-125 (202)
4 COG4565 CitB Response regulato 97.5 6.7E-05 1.4E-09 73.9 4.0 42 1-42 80-121 (224)
5 COG2204 AtoC Response regulato 97.5 0.00011 2.3E-09 79.4 4.9 43 1-43 82-124 (464)
6 COG0745 OmpR Response regulato 97.3 0.00023 4.9E-09 69.9 3.9 44 1-44 78-121 (229)
7 PRK09581 pleD response regulat 97.0 0.00061 1.3E-08 69.0 3.7 41 1-41 234-274 (457)
8 COG4567 Response regulator con 96.9 0.00071 1.5E-08 64.2 2.9 37 1-37 87-123 (182)
9 PLN03029 type-a response regul 96.7 0.0019 4.1E-08 62.3 4.8 44 1-44 108-151 (222)
10 PRK10046 dpiA two-component re 96.4 0.0042 9.1E-08 59.0 5.0 42 1-42 84-125 (225)
11 PRK10529 DNA-binding transcrip 96.4 0.0043 9.4E-08 57.0 4.7 42 1-42 78-119 (225)
12 PRK10643 DNA-binding transcrip 96.3 0.0054 1.2E-07 55.6 4.6 42 1-42 78-119 (222)
13 TIGR03787 marine_sort_RR prote 96.3 0.0059 1.3E-07 56.2 4.9 42 1-42 80-121 (227)
14 PRK10766 DNA-binding transcrip 96.3 0.0054 1.2E-07 56.2 4.6 42 1-42 79-120 (221)
15 PRK10336 DNA-binding transcrip 96.2 0.0061 1.3E-07 55.3 4.5 42 1-42 78-119 (219)
16 PRK10161 transcriptional regul 96.1 0.0068 1.5E-07 56.0 4.6 41 1-41 82-122 (229)
17 PRK11173 two-component respons 96.1 0.0066 1.4E-07 56.8 4.5 43 1-43 80-122 (237)
18 PRK09836 DNA-binding transcrip 96.1 0.0071 1.5E-07 55.8 4.5 41 1-41 78-118 (227)
19 PRK10816 DNA-binding transcrip 96.1 0.007 1.5E-07 55.7 4.4 41 1-41 78-118 (223)
20 CHL00148 orf27 Ycf27; Reviewed 96.0 0.0091 2E-07 55.1 4.7 42 1-42 83-124 (240)
21 PRK10430 DNA-binding transcrip 95.9 0.011 2.5E-07 56.4 5.1 42 1-42 83-124 (239)
22 TIGR02154 PhoB phosphate regul 95.9 0.0096 2.1E-07 54.0 4.2 42 1-42 82-123 (226)
23 TIGR02915 PEP_resp_reg putativ 95.9 0.0089 1.9E-07 62.5 4.5 41 1-41 79-119 (445)
24 PF09425 CCT_2: Divergent CCT 95.8 0.0049 1.1E-07 42.6 1.5 26 426-452 1-26 (27)
25 PRK10955 DNA-binding transcrip 95.8 0.011 2.5E-07 54.2 4.4 42 1-42 77-118 (232)
26 PRK10693 response regulator of 95.8 0.011 2.4E-07 59.6 4.6 42 1-42 51-93 (303)
27 PRK09468 ompR osmolarity respo 95.8 0.01 2.2E-07 55.3 4.1 42 1-42 83-124 (239)
28 PRK10610 chemotaxis regulatory 95.8 0.018 3.8E-07 45.9 4.9 40 3-42 88-127 (129)
29 PRK10360 DNA-binding transcrip 95.7 0.015 3.1E-07 52.3 4.4 40 1-40 78-117 (196)
30 PRK11517 transcriptional regul 95.6 0.014 3E-07 53.3 4.3 42 1-42 77-118 (223)
31 TIGR01387 cztR_silR_copR heavy 95.6 0.015 3.2E-07 52.6 4.2 41 1-41 76-116 (218)
32 PRK11083 DNA-binding response 95.5 0.013 2.8E-07 53.4 3.8 42 1-42 81-122 (228)
33 PRK09958 DNA-binding transcrip 95.5 0.018 3.9E-07 52.0 4.4 41 1-41 79-119 (204)
34 PRK10840 transcriptional regul 95.4 0.018 4E-07 53.8 4.4 39 1-39 86-124 (216)
35 TIGR02875 spore_0_A sporulatio 95.3 0.019 4.2E-07 55.3 4.4 41 1-41 84-124 (262)
36 KOG1601 GATA-4/5/6 transcripti 95.3 0.0069 1.5E-07 56.8 1.2 42 425-466 289-330 (340)
37 PRK10701 DNA-binding transcrip 95.3 0.022 4.7E-07 53.3 4.5 41 2-42 79-119 (240)
38 PRK13856 two-component respons 95.3 0.023 5.1E-07 53.6 4.6 38 5-42 83-120 (241)
39 PRK09935 transcriptional regul 95.2 0.026 5.7E-07 50.7 4.4 41 1-41 83-123 (210)
40 PRK11697 putative two-componen 95.1 0.029 6.2E-07 52.7 4.7 39 2-42 81-119 (238)
41 PRK15479 transcriptional regul 95.0 0.033 7.3E-07 50.5 4.7 42 1-42 78-119 (221)
42 PRK14084 two-component respons 94.9 0.035 7.6E-07 52.6 4.6 39 2-42 81-119 (246)
43 PRK10710 DNA-binding transcrip 94.6 0.046 1E-06 50.5 4.5 41 2-42 88-128 (240)
44 PRK11475 DNA-binding transcrip 94.5 0.044 9.6E-07 53.0 4.3 40 1-40 74-114 (207)
45 PRK10365 transcriptional regul 94.2 0.038 8.1E-07 57.5 3.5 42 1-42 83-124 (441)
46 PRK10923 glnG nitrogen regulat 94.2 0.057 1.2E-06 57.0 4.9 42 1-42 81-122 (469)
47 COG2197 CitB Response regulato 94.2 0.062 1.3E-06 51.9 4.6 40 1-40 80-119 (211)
48 PRK09483 response regulator; P 94.1 0.063 1.4E-06 48.9 4.3 40 1-40 81-120 (217)
49 PRK11361 acetoacetate metaboli 94.0 0.047 1E-06 57.1 3.6 40 1-40 82-121 (457)
50 PRK15115 response regulator Gl 94.0 0.05 1.1E-06 56.9 3.7 41 1-41 83-123 (444)
51 COG0784 CheY FOG: CheY-like re 93.7 0.1 2.2E-06 44.0 4.4 40 1-40 85-125 (130)
52 PRK09581 pleD response regulat 93.7 0.098 2.1E-06 53.1 5.1 42 1-42 82-123 (457)
53 PRK10403 transcriptional regul 93.7 0.09 2E-06 47.0 4.3 40 1-40 86-125 (215)
54 TIGR01818 ntrC nitrogen regula 93.6 0.083 1.8E-06 55.5 4.6 41 1-41 76-116 (463)
55 PRK15369 two component system 93.5 0.11 2.3E-06 46.0 4.5 40 1-40 83-122 (211)
56 COG3437 Response regulator con 93.5 0.059 1.3E-06 56.9 3.2 36 1-36 95-130 (360)
57 PRK13435 response regulator; P 93.5 0.078 1.7E-06 46.1 3.5 34 11-44 91-124 (145)
58 COG3707 AmiR Response regulato 93.3 0.096 2.1E-06 51.2 4.1 42 1-42 83-124 (194)
59 PRK11107 hybrid sensory histid 93.0 0.087 1.9E-06 59.3 3.9 40 1-40 747-786 (919)
60 PRK10651 transcriptional regul 92.6 0.17 3.6E-06 45.5 4.4 39 2-40 87-125 (216)
61 PRK15347 two component system 92.4 0.15 3.3E-06 57.5 4.8 41 1-41 772-812 (921)
62 PRK11466 hybrid sensory histid 91.8 0.17 3.7E-06 57.3 4.3 41 1-41 760-800 (914)
63 COG3706 PleD Response regulato 91.7 0.2 4.4E-06 54.2 4.5 43 1-43 212-254 (435)
64 cd00156 REC Signal receiver do 91.6 0.15 3.2E-06 38.2 2.4 36 3-38 77-112 (113)
65 PRK09390 fixJ response regulat 91.1 0.19 4.2E-06 44.1 3.1 40 2-41 82-121 (202)
66 TIGR02956 TMAO_torS TMAO reduc 90.6 0.28 6.1E-06 55.8 4.5 40 1-40 783-822 (968)
67 PRK09959 hybrid sensory histid 89.7 0.36 7.8E-06 56.7 4.5 40 1-40 1036-1075(1197)
68 TIGR03815 CpaE_hom_Actino heli 87.9 0.59 1.3E-05 47.5 4.1 35 4-38 51-85 (322)
69 PRK12555 chemotaxis-specific m 86.6 0.74 1.6E-05 46.9 4.0 21 6-26 86-106 (337)
70 PRK11091 aerobic respiration c 85.4 0.93 2E-05 50.9 4.4 38 2-40 607-644 (779)
71 COG3947 Response regulator con 82.9 0.53 1.1E-05 49.3 1.0 43 1-45 78-120 (361)
72 PRK12704 phosphodiesterase; Pr 81.2 1.5 3.2E-05 48.6 3.7 42 1-42 255-298 (520)
73 PRK13558 bacterio-opsin activa 79.2 1.9 4.2E-05 47.5 3.8 39 1-39 85-125 (665)
74 PRK10100 DNA-binding transcrip 79.0 2.4 5.1E-05 41.3 4.0 38 1-40 87-126 (216)
75 PRK00742 chemotaxis-specific m 78.5 3.1 6.7E-05 42.7 4.8 22 6-27 89-110 (354)
76 PF01408 GFO_IDH_MocA: Oxidore 69.6 11 0.00023 32.0 5.3 38 5-42 74-113 (120)
77 COG3279 LytT Response regulato 58.8 8.1 0.00018 38.4 2.9 35 8-42 86-120 (244)
78 KOG1601 GATA-4/5/6 transcripti 46.4 2.5 5.3E-05 39.7 -2.9 40 3-42 101-140 (340)
79 PRK15411 rcsA colanic acid cap 41.6 25 0.00055 33.7 3.2 39 1-40 83-122 (207)
80 smart00521 CBF CCAAT-Binding t 36.9 48 0.001 27.4 3.5 25 446-470 36-61 (62)
81 PRK11107 hybrid sensory histid 35.8 38 0.00082 38.5 3.9 38 2-39 613-650 (919)
82 COG2201 CheB Chemotaxis respon 27.5 70 0.0015 34.3 3.9 37 7-43 88-126 (350)
83 TIGR01761 thiaz-red thiazoliny 24.2 1.1E+02 0.0023 32.5 4.6 38 4-41 77-114 (343)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.74 E-value=7.6e-19 Score=132.47 Aligned_cols=45 Identities=56% Similarity=0.986 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhhhhhhhCCCCCcceecccC
Q 011192 429 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVH 473 (491)
Q Consensus 429 R~~~l~ryr~Krk~R~f~KkirY~~RK~~A~~RpRvKGrFvk~~~ 473 (491)
|+++|+||++||+.|+|+|+|+|+|||.+|+.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 689999999999999999999999999999999999999999764
No 2
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=98.30 E-value=5e-07 Score=97.14 Aligned_cols=45 Identities=29% Similarity=0.447 Sum_probs=42.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
+|||++|+||++||++|+.||||||++..||..++.+++.++-..
T Consensus 82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred EeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999998888543
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=97.62 E-value=3.9e-05 Score=74.39 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=41.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||||++..++.+||+.||+|||-|||+..+|...++.++++...
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~ 125 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDAS 125 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999887643
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=97.55 E-value=6.7e-05 Score=73.90 Aligned_cols=42 Identities=19% Similarity=0.440 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|+-++.++++.||++||+|||||||..+-|...+..-.+++
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r 121 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKR 121 (224)
T ss_pred EeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999998866555
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.49 E-value=0.00011 Score=79.44 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=40.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||+|++.++|..||+.||+|||.|||+.++|..++.+++....
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999987653
No 6
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=97.28 E-value=0.00023 Score=69.89 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||+.++.+....++..||.|||+|||.+.||..-++-++|+...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 58889999999999999999999999999999999999988754
No 7
>PRK09581 pleD response regulator PleD; Reviewed
Probab=96.96 E-value=0.00061 Score=68.99 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=37.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++++++++.+|+..||.|||+||++.++|...+....++
T Consensus 234 ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 234 LVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999888775543
No 8
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=96.85 E-value=0.00071 Score=64.17 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=34.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 37 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqh 37 (491)
+|||.+..++..||++||||||-||-+.+++...+..
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 5899999999999999999999999999999877654
No 9
>PLN03029 type-a response regulator protein; Provisional
Probab=96.73 E-value=0.0019 Score=62.33 Aligned_cols=44 Identities=32% Similarity=0.636 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++...+.+.+|+..||.|||+||++..+|..++.++++....
T Consensus 108 ls~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~~ 151 (222)
T PLN03029 108 MSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSK 151 (222)
T ss_pred EeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999998776644
No 10
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=96.44 E-value=0.0042 Score=59.02 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+.+++.++++.||.+||+||++.++|...++++....
T Consensus 84 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 84 TTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred EEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999886544
No 11
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=96.39 E-value=0.0043 Score=57.02 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+...+|+..||.|||+||+..++|...++.++++.
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 467788899999999999999999999999999998887764
No 12
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=96.28 E-value=0.0054 Score=55.63 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=37.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+.+.+.+++..||.|||.||++.++|...++.++++.
T Consensus 78 ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 78 LTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 467888999999999999999999999999999998887654
No 13
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=96.28 E-value=0.0059 Score=56.20 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+..++..||.|||.||+..++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 467888899999999999999999999999999999988765
No 14
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=96.26 E-value=0.0054 Score=56.23 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=37.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
++++.+...+.+|+..||.|||.||+...+|...++.++++.
T Consensus 79 l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 79 VTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 356778888999999999999999999999999999988775
No 15
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=96.19 E-value=0.0061 Score=55.35 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+++..||.|||+||+..++|...++.++++.
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 467888899999999999999999999999999998887653
No 16
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=96.15 E-value=0.0068 Score=56.03 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+...+.+|+..||.|||.||++.++|...++.++++
T Consensus 82 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 46778889999999999999999999999999999988876
No 17
>PRK11173 two-component response regulator; Provisional
Probab=96.12 E-value=0.0066 Score=56.82 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
+|++.+......++..||.|||.||++..+|...++.++++..
T Consensus 80 lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~ 122 (237)
T PRK11173 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 (237)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence 3667788888999999999999999999999999998887753
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=96.10 E-value=0.0071 Score=55.84 Aligned_cols=41 Identities=32% Similarity=0.428 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
+|++.+.+...+|+..||.|||.||++.++|...++.++++
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 46778889999999999999999999999999999888765
No 19
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=96.08 E-value=0.007 Score=55.70 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=37.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
+|++.+.+...+++..||.|||.||++..+|...++.++++
T Consensus 78 ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 46778889999999999999999999999999999888765
No 20
>CHL00148 orf27 Ycf27; Reviewed
Probab=96.00 E-value=0.0091 Score=55.14 Aligned_cols=42 Identities=33% Similarity=0.462 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+...+.+++..||.|||+||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 467888899999999999999999999999999988877653
No 21
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=95.91 E-value=0.011 Score=56.43 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+++..||.+||.||+..++|...+..++.+.
T Consensus 83 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999998876654
No 22
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=95.87 E-value=0.0096 Score=54.03 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+...+.+++..||.+||.||+..++|...++.++++.
T Consensus 82 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 82 LTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 467788899999999999999999999999999998887653
No 23
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.86 E-value=0.0089 Score=62.47 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+.+.+|++.||.|||+||++.++|...++++++.
T Consensus 79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 79 ITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 57888999999999999999999999999999999887654
No 24
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.80 E-value=0.0049 Score=42.55 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcccch
Q 011192 426 SIQREAALNKFRLKRKDRCYDKKVRYE 452 (491)
Q Consensus 426 ~~~R~~~l~ryr~Krk~R~f~KkirY~ 452 (491)
+..|.+.|+||.||||.|... +..|.
T Consensus 1 P~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 1 PIARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp -----HHHHHHHHHH------------
T ss_pred CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 357999999999999999987 77774
No 25
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=95.79 E-value=0.011 Score=54.20 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+...+.+|+..||.+||.||++.++|...++.++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 77 LTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 467788889999999999999999999999999998887653
No 26
>PRK10693 response regulator of RpoS; Provisional
Probab=95.78 E-value=0.011 Score=59.64 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCC-CHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv-~~eELk~lwqhv~rk~ 42 (491)
+|++.+.+.+.+|++.||.|||+||+ +.++|...++.+++..
T Consensus 51 lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 51 ISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 47888999999999999999999999 5999999998887654
No 27
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=95.78 E-value=0.01 Score=55.32 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+.+...+++..||.|||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 356778888999999999999999999999999999887763
No 28
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=95.76 E-value=0.018 Score=45.89 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=35.3
Q ss_pred CcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 3 SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 3 ~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
.......+.+++..|+.+|+.||+..++|...++.+++++
T Consensus 88 ~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 88 AEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 3455677889999999999999999999999999998876
No 29
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=95.65 E-value=0.015 Score=52.25 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=35.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+|.+++.+.+..|+..||.+||.||+..++|...++.+.+
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3677888999999999999999999999999999888765
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=95.64 E-value=0.014 Score=53.33 Aligned_cols=42 Identities=33% Similarity=0.462 Sum_probs=36.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+++..||.|||.||+..++|...++.++++.
T Consensus 77 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 77 LTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 466778899999999999999999999999999988877643
No 31
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=95.58 E-value=0.015 Score=52.63 Aligned_cols=41 Identities=39% Similarity=0.515 Sum_probs=36.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+...+.+++..||.|||+||+..++|...++.++++
T Consensus 76 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 76 LTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred EEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 46778889999999999999999999999999998887654
No 32
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=95.54 E-value=0.013 Score=53.38 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+......|+..||.|||.||+...+|...++.++++.
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 466778888999999999999999999999999988877654
No 33
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=95.47 E-value=0.018 Score=51.96 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=36.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
+|++.+...+..++..||.+||+||+..++|...++.+++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 46677888999999999999999999999999999888653
No 34
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=95.42 E-value=0.018 Score=53.85 Aligned_cols=39 Identities=5% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 39 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~ 39 (491)
+|.+.+..++.+|++.||.+||+||+..++|...++.+.
T Consensus 86 ls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~ 124 (216)
T PRK10840 86 LTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQ 124 (216)
T ss_pred EEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHH
Confidence 467888999999999999999999999999998887764
No 35
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=95.34 E-value=0.019 Score=55.29 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
+|++.......+++..||.+||+||++.++|...++++++.
T Consensus 84 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 84 LSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 47788889999999999999999999999999998887653
No 36
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=95.33 E-value=0.0069 Score=56.78 Aligned_cols=42 Identities=50% Similarity=0.782 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCcccchhhhhhhhhCCCCCc
Q 011192 425 RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKG 466 (491)
Q Consensus 425 ~~~~R~~~l~ryr~Krk~R~f~KkirY~~RK~~A~~RpRvKG 466 (491)
....|++.+.||+++++.|.|.++++|..|+..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 356799999999999999999999999999999999999999
No 37
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=95.31 E-value=0.022 Score=53.32 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+++.+.....+++..||.|||.||+...+|...+..++++.
T Consensus 79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 55667777889999999999999999999999988877764
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=95.28 E-value=0.023 Score=53.56 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 5 DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
.+.....+++..||.|||+||++.++|...++.++++.
T Consensus 83 ~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 83 LEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 35667789999999999999999999999998888764
No 39
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=95.17 E-value=0.026 Score=50.74 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=35.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+...+.+++..||.+||.||+..++|...++.+++.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 83 LSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 46777888999999999999999999999999998877553
No 40
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=95.10 E-value=0.029 Score=52.71 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=33.1
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
|++. +++..|+..||.|||+||+..++|...++++.++.
T Consensus 81 t~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (238)
T PRK11697 81 TAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER 119 (238)
T ss_pred eccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 4554 47789999999999999999999999999886543
No 41
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=95.02 E-value=0.033 Score=50.45 Aligned_cols=42 Identities=31% Similarity=0.466 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+++..||.+||.||+..++|...++.++++.
T Consensus 78 lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 78 LTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 456778888999999999999999999999999998887654
No 42
>PRK14084 two-component response regulator; Provisional
Probab=94.88 E-value=0.035 Score=52.64 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
|++. +++.+|+..||.+||+||+..++|...+++++++.
T Consensus 81 t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 81 TAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred ecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 4554 36789999999999999999999999999887554
No 43
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=94.58 E-value=0.046 Score=50.47 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=35.8
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+++.+......++..||.|||.||+..++|...++.++++.
T Consensus 88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 55667788889999999999999999999999988887754
No 44
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=94.48 E-value=0.044 Score=53.01 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=34.2
Q ss_pred CCCcchHHHHHHHH-HhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCM-MRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal-~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++++..++.+++ +.||.+||.||+..++|...++.|++
T Consensus 74 lt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 74 IADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred EeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 57888777777776 69999999999999999999888764
No 45
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.24 E-value=0.038 Score=57.46 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.++++.||.|||+||+..++|...+++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999887654
No 46
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.24 E-value=0.057 Score=56.97 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=37.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+..|++.||.|||.||+..++|...+++++...
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999887643
No 47
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=94.19 E-value=0.062 Score=51.93 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=36.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+|.+++..++.+|++.||..||+|....++|...++.|..
T Consensus 80 lt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred EeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999988887753
No 48
>PRK09483 response regulator; Provisional
Probab=94.14 E-value=0.063 Score=48.93 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=35.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+|.+.+...+.+++..||.+||.||+..++|...++.+++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 3567788889999999999999999999999988887754
No 49
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=93.98 E-value=0.047 Score=57.15 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+|++.+.+.+..|+..||.|||+||+..++|...+++++.
T Consensus 82 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 4788899999999999999999999999999998887654
No 50
>PRK15115 response regulator GlrR; Provisional
Probab=93.97 E-value=0.05 Score=56.92 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+.+.+++..||.|||+||+..++|...++.+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999999988764
No 51
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=93.66 E-value=0.1 Score=43.95 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHH-HHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eE-Lk~lwqhv~r 40 (491)
+|++.......+++..|+.+||.||+...+ |...+++.+.
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 85 LTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 467777777888999999999999987777 7777775543
No 52
>PRK09581 pleD response regulator PleD; Reviewed
Probab=93.65 E-value=0.098 Score=53.12 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|+..+...+.+++..||.+||.||++.++|...+..+++..
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 82 VTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999888876543
No 53
>PRK10403 transcriptional regulator NarP; Provisional
Probab=93.65 E-value=0.09 Score=47.02 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
|+.+.+...+..++..||.+||.||++.++|...++.+++
T Consensus 86 l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 86 LTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred EeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 3566778888999999999999999999999999888764
No 54
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.60 E-value=0.083 Score=55.50 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+...+.+|++.||.|||.||+..++|...+++++..
T Consensus 76 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 76 MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 47788899999999999999999999999999999887654
No 55
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=93.52 E-value=0.11 Score=46.02 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+...+..++..||.+||.||+...+|...++.+++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 83 LTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred EeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 4667788899999999999999999999999988887654
No 56
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=93.48 E-value=0.059 Score=56.91 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=33.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 36 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwq 36 (491)
+|++.+.+..++|+..||.|||.|||++.+|+..+.
T Consensus 95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~ 130 (360)
T COG3437 95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVS 130 (360)
T ss_pred EeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHH
Confidence 478999999999999999999999999999998884
No 57
>PRK13435 response regulator; Provisional
Probab=93.47 E-value=0.078 Score=46.08 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=29.4
Q ss_pred HHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011192 11 YKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 11 ~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
..++..||.+||+||++.++|..++++++.+...
T Consensus 91 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 91 VPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 4678899999999999999999999999765543
No 58
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=93.26 E-value=0.096 Score=51.22 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=37.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+++|++.+++.+|+..||..|||||++..-|+-++.-+..+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 478999999999999999999999999999998887765443
No 59
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=93.02 E-value=0.087 Score=59.27 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++...+...+|+..||.|||.||++.++|...+.+++.
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 5788999999999999999999999999999888877644
No 60
>PRK10651 transcriptional regulator NarL; Provisional
Probab=92.58 E-value=0.17 Score=45.49 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=34.8
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
++..+...+..++..||.+||.||++..+|...++.+++
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 87 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred eCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 566778889999999999999999999999999888765
No 61
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=92.43 E-value=0.15 Score=57.50 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+...+|+..||.|||.||++.++|...+..+++.
T Consensus 772 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 772 LTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 57888899999999999999999999999999998887653
No 62
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=91.78 E-value=0.17 Score=57.32 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.....+.+++..|+.+||.||+..++|...+.++++.
T Consensus 760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 47788889999999999999999999999999999888753
No 63
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=91.67 E-value=0.2 Score=54.23 Aligned_cols=43 Identities=33% Similarity=0.538 Sum_probs=35.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||+-++.+.+-+|++.||.|||+|||...+|..=+...++++.
T Consensus 212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred EecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 4677889999999999999999999998888776555555443
No 64
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=91.59 E-value=0.15 Score=38.19 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=30.3
Q ss_pred CcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHH
Q 011192 3 SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 38 (491)
Q Consensus 3 ~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv 38 (491)
.........+++..|+.+|+.||+...+|...++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 344567788999999999999999999998888754
No 65
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=91.10 E-value=0.19 Score=44.14 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
++..+.+.+.+++..||.+||.||+...+|...++.++..
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred ECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 5567788889999999999999999999998888877654
No 66
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=90.57 E-value=0.28 Score=55.81 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=36.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++...+...+|+..|+.+||.|||+.++|..++..++.
T Consensus 783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 4778888999999999999999999999999999888764
No 67
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=89.69 E-value=0.36 Score=56.70 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=35.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+...+.+|+..||.|||.||+..++|...++.+.+
T Consensus 1036 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1036 LTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 4788889999999999999999999999999988877643
No 68
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.93 E-value=0.59 Score=47.48 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHH
Q 011192 4 QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 38 (491)
Q Consensus 4 ~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv 38 (491)
..+.+...+||+.||.|||.+|+...||..++..+
T Consensus 51 ~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 51 EPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 45788999999999999999999999999888765
No 69
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=86.55 E-value=0.74 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhccceeEeCCC
Q 011192 6 SVSTVYKCMMRGAADYLVKPV 26 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv 26 (491)
..+.+.+|++.||.|||.||+
T Consensus 86 ~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 86 NASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred CHHHHHHHHhcCceEEEECCC
Confidence 366788999999999999999
No 70
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=85.41 E-value=0.93 Score=50.89 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
|++.. ....+|+..|+.+||.||++.++|...+++++.
T Consensus 607 ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 607 TANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred ECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 44443 456789999999999999999999999888764
No 71
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.86 E-value=0.53 Score=49.26 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
+|+|+++.. .+...-+.|||+|||..+.|...+....++....
T Consensus 78 Issh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~ 120 (361)
T COG3947 78 ISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELT 120 (361)
T ss_pred Eecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 466665544 4445556999999999999999988877655444
No 72
>PRK12704 phosphodiesterase; Provisional
Probab=81.21 E-value=1.5 Score=48.62 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCCcchHH--HHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 1 MSSQDSVS--TVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e--~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||+++... .+..+|..|+.||++||++++||....+.-+.+.
T Consensus 255 ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 255 LSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred EecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 68888887 9999999999999999999999998887765544
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=79.16 E-value=1.9 Score=47.47 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHH--HHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRN--ELRNLWQHVW 39 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~e--ELk~lwqhv~ 39 (491)
||++.+.+.+.+++..||.|||+||.... .|...++.++
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 57888999999999999999999997542 4444444433
No 74
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=78.97 E-value=2.4 Score=41.34 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=30.4
Q ss_pred CCCcchHHHHHHHHHh--ccceeEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMR--GAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~--GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+|++++ ++..++.. ||..||.|+...++|...++.|.+
T Consensus 87 lt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 87 LNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred EECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 356665 55677775 999999999999999998887753
No 75
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=78.52 E-value=3.1 Score=42.66 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhccceeEeCCCC
Q 011192 6 SVSTVYKCMMRGAADYLVKPVR 27 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv~ 27 (491)
..+.+.+|+..||.|||.||+.
T Consensus 89 ~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 89 GAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CHHHHHHHHhCCCcEEEeCCcc
Confidence 4567889999999999999994
No 76
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=69.57 E-value=11 Score=32.01 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHHH
Q 011192 5 DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk~ 42 (491)
.-++++++||+.|..=|+-||+ +.+|++.|++.+.++.
T Consensus 74 ~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 4578999999999999999999 9999999998876543
No 77
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=58.82 E-value=8.1 Score=38.41 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.7
Q ss_pred HHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 8 STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 8 e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+++..|....|.|||+||+..+.|...++...+.+
T Consensus 86 ~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~~ 120 (244)
T COG3279 86 EYAVAAFEVEALDYLLKPISEERLAKTLERLRRYA 120 (244)
T ss_pred HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHHH
Confidence 45666778899999999999999999999876653
No 78
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=46.40 E-value=2.5 Score=39.71 Aligned_cols=40 Identities=33% Similarity=0.353 Sum_probs=33.1
Q ss_pred CcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011192 3 SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 3 ~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
..+....+..++..|+.+|++||++..+|+.+|+|+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 140 (340)
T KOG1601|consen 101 SSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVRVKD 140 (340)
T ss_pred ccccchhhhcccCCcccccccccccCCCcccCCccccccc
Confidence 3344555788888899999999999999999999987654
No 79
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=41.64 E-value=25 Score=33.73 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=29.0
Q ss_pred CCCcchHHHHHHHHHhccce-eEeCCCCHHHHHHHHHHHHH
Q 011192 1 MSSQDSVSTVYKCMMRGAAD-YLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~D-YLlKPv~~eELk~lwqhv~r 40 (491)
+|++++..+.. ++..|+.. |+.|+...++|...++.+..
T Consensus 83 lt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 83 FMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred EECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 35666666654 66666654 89999999999999888744
No 80
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=36.87 E-value=48 Score=27.37 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCcccchhhhhhhhhCCC-CCcceec
Q 011192 446 DKKVRYESRKKLAEQRPR-VKGQFVR 470 (491)
Q Consensus 446 ~KkirY~~RK~~A~~RpR-vKGrFvk 470 (491)
.|..-|++|-+.|-.||| --|||..
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 567889999999999999 6699975
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=35.77 E-value=38 Score=38.53 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=30.4
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHH
Q 011192 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 39 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~ 39 (491)
+.........+++..|+.+||.||+...+|...+....
T Consensus 613 ~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 613 LPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred eCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 34455667788899999999999999999988776543
No 82
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=27.46 E-value=70 Score=34.28 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHHHHHhccceeEeCCCCH--HHHHHHHHHHHHHHh
Q 011192 7 VSTVYKCMMRGAADYLVKPVRR--NELRNLWQHVWRRQS 43 (491)
Q Consensus 7 ~e~v~kal~~GA~DYLlKPv~~--eELk~lwqhv~rk~~ 43 (491)
.++..+||.+||.||+-||... .++..+-+.+..|..
T Consensus 88 ~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~ 126 (350)
T COG2201 88 AEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVR 126 (350)
T ss_pred HHHHHHHHhcCcceeecCCCcccccchHHHHHHHHHHHH
Confidence 6889999999999999999853 444444444333433
No 83
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=24.23 E-value=1.1e+02 Score=32.46 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011192 4 QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 4 ~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
+.-++.+.+||+.|.-=++-||+..+|...|++.+.++
T Consensus 77 ~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 77 GQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred ccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 34589999999999999999999999999988887543
Done!