BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011197
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 226/467 (48%), Gaps = 56/467 (11%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIW 87
G + +AGWV T F+ + D + + +Q V+ + G + K+ + +S+
Sbjct: 16 GKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 88 IQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
++G V + + E+ V K+ V+ S+ P ++ S E L HL RT A
Sbjct: 74 VEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASA 133
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
+ +V+ L A ++ ++G+ + PI+ EG F +
Sbjct: 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLK---------------- 177
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+F+K A+L+ S QL E L V++ P+FRAE S T RHL E
Sbjct: 178 --------------YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTE 223
Query: 267 FWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLST 326
FW +E E A+ DL D M +L S M V+ L+ K++++ F D L+T
Sbjct: 224 FWHLELEAAWMDLWDIMKVEE---ELVSYM-VQRTLELRKKEIEMFR--------DDLTT 271
Query: 327 V--AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 384
+ E F ++SY +AI++L V+WG DL ++ ER LTEE P V Y
Sbjct: 272 LKNTEPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEF--DRPFFVYGY 325
Query: 385 PKEIKAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQXXXXXXXXXXXXXXXKLNRDSY 442
PK IKAFYM+++ +D R V A DML P GE+IGGSQ ++ Y
Sbjct: 326 PKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDY 385
Query: 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489
WYLDLR YGSVPH+GFGLG ERLV + +++IR A FPRTP +
Sbjct: 386 EWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARL 432
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 217/473 (45%), Gaps = 70/473 (14%)
Query: 29 GLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G ++ GW +R A+ ++ F+E+ DGS QCV+ E + K L+T S+
Sbjct: 30 GKLVTFKGWAYHIRKARKTLIFVELRDGS--GYCQCVIFG-KELCEPEKVKLLTRECSLE 86
Query: 88 IQG--------NVVPSQGSKQKVELKVNKIVLVGKS--DPSYPIQKKRVSREFLRTKAHL 137
I G N P +E++V + ++G+S D I K + ++ + H+
Sbjct: 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNR-HI 145
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
R+ V ++R+ + + K++ +N F I P I + CEG F +
Sbjct: 146 VIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL-------- 197
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN 257
+F +PA+LT S QL E+ +L + ++RAE
Sbjct: 198 ----------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQ 235
Query: 258 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317
S T RHLAE+ +E EL F +D + +L+ C ++DN M I
Sbjct: 236 SRTVRHLAEYLHLEAELPFISFEDLLN----HLEDLVCT----VIDNV---MAVHGDKIR 284
Query: 318 KGIIDRLSTVAERDFVQLSYTDAIEL-----LIKAKKKFEFLVKWGCDLQSEHERYLTEE 372
K ++ + R F +++Y DAI+ ++ K FE+ G D+ + ER +T+E
Sbjct: 285 K--MNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKPFEY----GEDISEKPERQMTDE 338
Query: 373 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-AMDMLVPRIGELIGGSQXXXXXXXXXXX 431
GCP+ + +P ++KAFYM + + ++D+L+P +GE++GGS
Sbjct: 339 I--GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGA 396
Query: 432 XXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
LN D Y+WY R YGS PH G+GLG ERLV + G ++IR +PR
Sbjct: 397 YKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPR 449
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 204/464 (43%), Gaps = 56/464 (12%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ + R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK-------------- 179
Query: 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRH 263
+FE+ AFL S QL E A+ L VY P FRAE NT+RH
Sbjct: 180 ----------------YFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRH 223
Query: 264 LAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDR 323
L E W I+ E+AF + D ++L+ + Y+ ++ +++D N +E+ +
Sbjct: 224 LNEAWSIDSEMAFIE---DEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLP- 279
Query: 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 380
F ++SY A+E+L K+ + WG D+ +E ER L + E
Sbjct: 280 --------FPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 381 VSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRD 440
+ YP E K FY+ + D+ + L R E+ G Q LN +
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE 387
Query: 441 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
S+ +YL YG PH GFGLG ERL++ + NIR+ I FPR
Sbjct: 388 SFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPR 431
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 203/464 (43%), Gaps = 56/464 (12%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK-------------- 179
Query: 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRH 263
+FE+ AFL S QL + A+ L VY P FRAE NT+RH
Sbjct: 180 ----------------YFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRH 223
Query: 264 LAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDR 323
L E W I+ E+AF + D ++L+ + Y+ ++ +++D N +E+ +
Sbjct: 224 LNEAWSIDSEMAFIE---DEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLP- 279
Query: 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 380
F ++SY A+E+L K+ + WG D+ +E ER L + E
Sbjct: 280 --------FPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 381 VSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRD 440
+ YP E K FY+ + D+ + L R E+ G Q LN +
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE 387
Query: 441 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
S+ +YL YG PH GFGLG ERL++ + NIR+ I FPR
Sbjct: 388 SFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPR 431
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 60/467 (12%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 14 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 69
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 129
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
A+ R+R A A + F G++ ++ P + + EG F
Sbjct: 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF------------------ 171
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
+ D+F + +FLT S QL ET L +V+ ++RAE S T RHLA
Sbjct: 172 ------------NLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLA 219
Query: 266 EFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL--DNCKEDMDFFNTWIEKGIIDR 323
E+ +E E F L D M ++ C V +L + K+ ++ N +
Sbjct: 220 EYAHVEAECPFITLDDLME----KIEELVCDTVDRLLADEEAKKLLEHINPKFQP----- 270
Query: 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIV 381
ER F+++ Y DAI+ L + + EF +G D+ ER++T+ P+++
Sbjct: 271 ----PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILL 324
Query: 382 SDYPKEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRD 440
+ +P EIKAFYM R D ++D+L+P +GE++GGS +++
Sbjct: 325 NRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK 384
Query: 441 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
Y+WYLD R YG+ PH G+GLG ER + + T +IRD +PR G
Sbjct: 385 PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVG 431
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 60/467 (12%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 16 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 71
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 72 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
A+ R+R A A + F G++ ++ P + + EG F
Sbjct: 132 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF------------------ 173
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
+ D+F + +FLT S QL ET L +V+ ++RAE S T RHLA
Sbjct: 174 ------------NLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLA 221
Query: 266 EFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL--DNCKEDMDFFNTWIEKGIIDR 323
E+ +E E F L D M ++ C V +L + K+ ++ N +
Sbjct: 222 EYAHVEAECPFITLDDLME----KIEELVCDTVDRLLADEEAKKLLEHINPKFQP----- 272
Query: 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIV 381
ER F+++ Y DAI+ L + + EF +G D+ ER++T+ P+++
Sbjct: 273 ----PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILL 326
Query: 382 SDYPKEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRD 440
+ +P EIKAFYM R D ++D+L+P +GE++GGS +++
Sbjct: 327 NRFPSEIKAFYMQRDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK 386
Query: 441 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
Y+WYLD R YG+ PH G+GLG ER + + T +IRD +PR G
Sbjct: 387 PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVG 433
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 123/459 (26%), Positives = 197/459 (42%), Gaps = 55/459 (11%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++ AGWV LR FI + D + L + S A G Q +T + I +
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQE----LTQESVIQV 71
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRP---RTNTFG 145
+G V + + + +EL +I L+ K+ P+ + + T+ R R
Sbjct: 72 RGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQ 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
AV ++++ A + + GFI I +P I AS EG + F V
Sbjct: 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI--------------- 176
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
+F K AFL S QL E A + V+ P +RAE S+T HLA
Sbjct: 177 ---------------YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLA 221
Query: 266 EFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325
EF ++ E+AFAD D M L V+ I + KE++ N + I
Sbjct: 222 EFISMDVEMAFADYNDVMQLLEKILHNI----VKTIKEEGKEELKILNYEPPEVKI---- 273
Query: 326 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 385
+L YT+AIE+L + + +K+G D+ + R L EE IV D+P
Sbjct: 274 -----PIKRLKYTEAIEIL----RSKGYNIKFGDDIGTPELRILNEELKEDLYFIV-DWP 323
Query: 386 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWY 445
+ + FY + + ++ L+ + E++ GS L +S+ ++
Sbjct: 324 SDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFF 383
Query: 446 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
L YG PHAGFG+G RL+ TG++++++ +PFPR
Sbjct: 384 LKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPR 422
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 183/439 (41%), Gaps = 63/439 (14%)
Query: 58 LSNMQCVMTSDAEGYDQVKSG---LITTGASIWIQGNVVPSQGSKQKVELKVNKI-VLVG 113
L +Q ++ D G QV +G L +++ ++G VV + + +E++ ++ VL
Sbjct: 28 LGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSP 87
Query: 114 KSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWI 170
+P+ P ++ R + + L ++ R A +V+ AL ++ F I
Sbjct: 88 ALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEI 147
Query: 171 SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230
+P + + EG F V D+FEK A+L
Sbjct: 148 FTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQ 177
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAY 289
S QL + VY P +R E +TSRHL E+ ++ E+ F AD +D M A
Sbjct: 178 SPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEAL 237
Query: 290 LQLYSCMQVRYILDNCKEDMDFFN-TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 348
L + L+ +++ TW +D +L++ +A +L
Sbjct: 238 L----AEMLEEALNTAGDEIRLLGATW----------PSFPQDIPRLTHAEAKRIL---- 279
Query: 349 KKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 405
K E G DL E ER L E E +G + V+ YP+ ++ FY +DG T +
Sbjct: 280 -KEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG-TTRSF 337
Query: 406 DMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFER 465
D+L R E+ G Q ++ +++ YL++ YG PH GF +G ER
Sbjct: 338 DLLF-RGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAER 396
Query: 466 LVQFATGVENIRDAIPFPR 484
L Q G+ N+R A FPR
Sbjct: 397 LTQKLLGLPNVRYARAFPR 415
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/514 (22%), Positives = 215/514 (41%), Gaps = 88/514 (17%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 24 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 77
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 78 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 137
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 138 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 197
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224
F + +P + + EG F VT +F+
Sbjct: 198 KKFTEVHTPKLLGAPSEGGSSVFEVT------------------------------YFKG 227
Query: 225 PAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 283
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + ++
Sbjct: 228 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEV 287
Query: 284 --ACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 341
+ ++ ++S + R+ + ++ ++ + V+L+Y + I
Sbjct: 288 LDTLSELFVFIFSELPKRFAHE--------IELVRKQYPVEEFKLPKDGKMVRLTYKEGI 339
Query: 342 ELLIKAKKK---FEFLVKWGCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MR 394
E+L A K+ FE DL +E+E++L + + I+ +P EI+ FY M
Sbjct: 340 EMLRAAGKEIGDFE-------DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMP 392
Query: 395 QNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWW--YLDLRHYG 452
+ + + D + R E++ G+Q L+ + Y D YG
Sbjct: 393 DPANPKYSNSYDFFM-RGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYG 451
Query: 453 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486
PHAG G+G ER+V F ++NIR A FPR P
Sbjct: 452 CPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDP 485
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/514 (22%), Positives = 215/514 (41%), Gaps = 88/514 (17%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 21 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 74
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 75 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 135 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 194
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224
F + +P + + EG F VT +F+
Sbjct: 195 KKFTEVHTPKLLGAPSEGGSSVFEVT------------------------------YFKG 224
Query: 225 PAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 283
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + ++
Sbjct: 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEV 284
Query: 284 --ACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 341
+ ++ ++S + R+ + ++ ++ + V+L+Y + I
Sbjct: 285 LDTLSELFVFIFSELPKRFAHE--------IELVRKQYPVEEFKLPKDGKMVRLTYKEGI 336
Query: 342 ELLIKAKKK---FEFLVKWGCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MR 394
E+L A K+ FE DL +E+E++L + + I+ +P EI+ FY M
Sbjct: 337 EMLRAAGKEIGDFE-------DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMP 389
Query: 395 QNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWW--YLDLRHYG 452
+ + + D + R E++ G+Q L+ + Y D YG
Sbjct: 390 DPANPKYSNSYDFFM-RGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYG 448
Query: 453 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486
PHAG G+G ER+V F ++NIR A FPR P
Sbjct: 449 CPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDP 482
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 142/361 (39%), Gaps = 67/361 (18%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RT T A+ R+++A +F F+ I +P + EG F V
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK--------- 286
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENS 258
+F++ A+L S QL + V+ GP FRAENS
Sbjct: 287 ---------------------YFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENS 325
Query: 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEK 318
NT RHL EF ++ E+ + + C +L++ +I D I K
Sbjct: 326 NTRRHLTEFEGLDIEMEIVE--NYHECIDVMEKLFT-----FIFDE-----------IPK 367
Query: 319 GIIDRLSTVAE---------RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369
D L + + R F++L+Y +AIE+L + E + + D + E L
Sbjct: 368 RFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIEML---RASGETIGDYD-DFTTPQEVKL 423
Query: 370 TE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXX 425
E + I+ +P I+ FY M DD + D+ V R E+ G+Q
Sbjct: 424 GELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFV-RGQEITSGAQRIHDP 482
Query: 426 XXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
++ + Y++ +GS PHAG G+G ER+ G+ NIR FPR
Sbjct: 483 EFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRD 542
Query: 486 P 486
P
Sbjct: 543 P 543
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 51/252 (20%)
Query: 240 ATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQ 297
A L ++ P R E+ + RH EF ++ E+ A ++D M +
Sbjct: 85 AMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVY------ 138
Query: 298 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 357
G+ + R+F + + E E L ++
Sbjct: 139 ---------------------GLFRKAEEWTGREFPKTKRFEVFEYS-------EVLEEF 170
Query: 358 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR-IGELI 416
G D ++ E EE F + Y +E+ F+ D+++P GE+
Sbjct: 171 GSDEKASQE---MEEPFWIINIPREFYDREVDGFWRN----------YDLILPYGYGEVA 217
Query: 417 GGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVEN 475
G + LN DS+ YL++ G + P AG G+G ERLV+F G ++
Sbjct: 218 SGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKH 277
Query: 476 IRDAIPFPRTPG 487
I + PFPR PG
Sbjct: 278 IAEVQPFPRIPG 289
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 385 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN----RD 440
PK++ A ++ + A DM++ E+ GGS +N R+
Sbjct: 454 PKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512
Query: 441 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 513 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
L R + R + +F ++GF+ I +P++T + EGA + L+PS
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDY-----LVPS 180
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 385 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN----RD 440
PK++ A ++ + A DM++ E+ GGS +N R+
Sbjct: 454 PKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512
Query: 441 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 513 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
L R + R + +F ++GF+ I +P++T + EGA + L+PS
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDY-----LVPS 180
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 51/252 (20%)
Query: 240 ATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQ 297
A L ++ P R E+ + RH EF ++ E+ A +KD M +
Sbjct: 85 AMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIEGAKMKDVMRL---------IEE 135
Query: 298 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 357
+ Y L E+ W + R F Y D +E ++
Sbjct: 136 LIYGLFRKAEE------WTGR------EFPRARHFKVYDYKDILE-------------EF 170
Query: 358 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR-IGELI 416
G D ++ E EE P + + P+E FY R+ + D+++P GE+
Sbjct: 171 GSDEKASME---MEE-----PFWIVNIPRE---FYDREENG--VWKNYDLILPYGYGEVS 217
Query: 417 GGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVEN 475
G + L DS+ YL++ G + P AG G+G ERLV+F G ++
Sbjct: 218 SGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAGAGIGVERLVRFIVGAKH 277
Query: 476 IRDAIPFPRTPG 487
I + PFPR PG
Sbjct: 278 IAEVQPFPRVPG 289
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/488 (18%), Positives = 182/488 (37%), Gaps = 72/488 (14%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
E L+ + + VAG + T R F + D +Q + D G Q + I+
Sbjct: 49 KEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQD--VTGQIQIYVRQDDVGEQQYELFKIS 106
Query: 82 -TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ-------KKRVSREFLRT 133
G + ++G + ++ + + +KV+ + K+ P + ++R + +L
Sbjct: 107 DLGDIVGVRGTMFKTKVGE--LSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDL 164
Query: 134 KAHLRPRTN-TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ P + TF R+ + + ++ +G++ + +P++ A A F
Sbjct: 165 I--MNPESKKTFIT----RSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFI---- 214
Query: 193 IPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGP 251
T +D + ++ ++ +L+ + L VY G
Sbjct: 215 -----------------THHNALDMT-------LYMRIAIELHLKRLIVGGLEKVYEIGR 250
Query: 252 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYL-----QLYSCMQVRYILDNCK 306
FR E +T RH EF M+E A+AD +D M + ++ +++Y +
Sbjct: 251 VFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY----GE 305
Query: 307 EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
+D W ++D + DF Q+S +A EL + + + +G +
Sbjct: 306 HLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFF 365
Query: 366 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV---------PRIGELI 416
E+ + ++ P + +P EI + DD R ++ + + + I
Sbjct: 366 EQKVEDKLI--QPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGREHANAFTELNDPI 423
Query: 417 GGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476
Q D +L+ YG P G G+G +RLV T +I
Sbjct: 424 DQRQRFEEQLKEREQGNDEAHEMDE--DFLEALEYGMPPTGGLGIGVDRLVMLLTNSPSI 481
Query: 477 RDAIPFPR 484
RD + FP+
Sbjct: 482 RDVLLFPQ 489
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 106/505 (20%), Positives = 184/505 (36%), Gaps = 106/505 (20%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 57 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 114
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 115 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 167
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++
Sbjct: 168 QRYLDLIANDKSR-QTFV----VRSKILAAIRQFMVARGFMEVETPMMQ----------- 211
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNV 246
+IP A+ P T +D +L ++ +L + V
Sbjct: 212 ----VIPGG--ASARPF----ITHHNALDLDM-------YLRIAPELYLKRLVVGGFERV 254
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYL-----QLYSCMQVRYI 301
+ FR E + RH EF M+E +A+AD D + + ++ +V Y
Sbjct: 255 FEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY- 312
Query: 302 LDNCKEDMDF---FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL-----IKAKKKFEF 353
+ DF F + I + E D L DA + L I +K
Sbjct: 313 ---GEHVFDFGKPFEKLTMREAIKKYR--PETDMADLDNFDAAKALAESIGITVEKS--- 364
Query: 354 LVKWGCDLQSEHERYLTE------EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 407
WG R +TE EA P +++YP E+ R + + +
Sbjct: 365 ---WGLG------RIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEF 415
Query: 408 LVPRIGELIGGSQXXXXXXXXXXXXXXXKLNR------DSYWW---YLDLRHYGSVPHAG 458
+ G IG ++N ++ ++ Y+ YG P AG
Sbjct: 416 FIG--GREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAG 473
Query: 459 FGLGFERLVQFATGVENIRDAIPFP 483
G+G +R++ T IRD I FP
Sbjct: 474 LGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 102/501 (20%), Positives = 184/501 (36%), Gaps = 92/501 (18%)
Query: 19 GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG 78
G NE L+ + + + VAG + T R +F+ + D +Q + D + G
Sbjct: 54 GKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQD--VGGRIQLYVARD-----DLPEG 106
Query: 79 LITTGASIWIQGNVVPSQGSKQKV---ELKVN--KIVLVGKSDPSYPI-------QKKRV 126
+ W G+++ ++G K EL ++ ++ L+ K+ P Q+ R
Sbjct: 107 VYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARY 166
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ +L ++ R NTF +VR+ + +F GF+ + +P++
Sbjct: 167 RQRYLDLISNDESR-NTF----KVRSQILSGIRQFMVNRGFMEVETPMMQ---------- 211
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSN 245
+IP AA P T +D +L ++ +L +
Sbjct: 212 -----VIPGG--AAARPF----ITHHNALDLDM-------YLRIAPELYLKRLVVGGFER 253
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ-----LYSCMQVRY 300
V+ FR E + RH EF M+E +A+AD KD + + + + +V Y
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTY 312
Query: 301 ---ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 357
LD K F + I + E D L D+ + + ++ W
Sbjct: 313 GDVTLDFGKP----FEKLTMREAIKKYR--PETDMADLDNFDSAKAIAESIG-IHVEKSW 365
Query: 358 GCDLQSEHERYLTE------EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 411
G R +TE EA P +++YP E+ R + + + +
Sbjct: 366 GLG------RIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIG- 418
Query: 412 IGELIGGSQXXXXXXXXXXXXXXXKL------NRDSYWW---YLDLRHYGSVPHAGFGLG 462
G IG ++ + ++ ++ Y+ +G P AG G+G
Sbjct: 419 -GREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIG 477
Query: 463 FERLVQFATGVENIRDAIPFP 483
+R+V T IRD I FP
Sbjct: 478 IDRMVMLFTNSHTIRDVILFP 498
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PH G LG +RL+ TG +IRD I FP++
Sbjct: 534 YGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKS 568
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 438 NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
R+ + ++L+ YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 504 QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 41/265 (15%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQVKSGLITTGA 84
VG +V+ GWV R + F+++ D L +Q V + Y ++V+ +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAK 72
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNT 143
+ + + +VE++++ + VL P +P+ E LR +
Sbjct: 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRY 132
Query: 144 FGAVA-------RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
R+R+ + A F GF+ + +P +T S EGA + L+P
Sbjct: 133 LDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD-----FLVPYR 187
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
E A+P+ S F++ L V+G L + FR E
Sbjct: 188 HEPGL--FYALPQ--------SPQLFKQ--MLMVAG----------LDRYFQIARCFRDE 225
Query: 257 NSNTSRHLAEFWMIEPELAFADLKD 281
+ R +F ++ E++F +++D
Sbjct: 226 DLRADRQ-PDFTQLDLEMSFVEVED 249
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 110/523 (21%), Positives = 175/523 (33%), Gaps = 139/523 (26%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS---DAEGYDQVKSG 78
E L+ L + +AG + R +F V DGS +Q +T AE YD K
Sbjct: 79 KEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQFFVTPADVGAETYDAFKK- 135
Query: 79 LITTGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRT 133
W G++V ++G +K ++ +K ++ L+ K+ P + ++ + R
Sbjct: 136 --------WDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRY 187
Query: 134 KAH-----LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC 188
+ + P T T R R + KF + F+ + +P++ A + F
Sbjct: 188 RQRYVDLIVTPETRT---TFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV 244
Query: 189 VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT-ALSNVY 247
T +D FL ++ +L + V+
Sbjct: 245 ---------------------THHNALDMEM-------FLRIAPELYLKRLIVGGFERVF 276
Query: 248 TFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE 307
FR E + RH EF M+E A+ D R++
Sbjct: 277 EINRNFRNEGV-SPRHNPEFTMMEFYAAYTD-------------------YRWL------ 310
Query: 308 DMDFFNTWIEKGIIDRLSTVA------ERDFVQ----LSYTDAIELLIKAKKKFEFLVKW 357
MDF I + +D L T E D Q L+ T AI+ A + +
Sbjct: 311 -MDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKY--APSYTDGQLSD 367
Query: 358 GCDLQSEHERY---LTEEAFGGC--------------------PVIVSDYPKEIKAFYMR 394
L+SE +R +T+ AF P + DYP E+ R
Sbjct: 368 DAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPL-AR 426
Query: 395 QNDDGRTVAAMDMLVPRIGELIGGSQXX---------XXXXXXXXXXXXXKLNRDSYWWY 445
++D TVA + R I G + K D +
Sbjct: 427 ESD---TVAG---ITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMF 480
Query: 446 LDLRH-----YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
D + YG P G G+G +RLV T IRD + FP
Sbjct: 481 FDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|2LNA|A Chain A, Solution Nmr Structure Of The Mitochondrial Inner Membrane
Domain (Residues 164-251), Ftsh_ext, From The
Paraplegin-Like Protein Afg3l2 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr6741a
Length = 99
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 310 DFFNTWIEKGIIDRLSTVAERDFVQLSYT 338
DF N ++ KG++DRL V +R FV++++T
Sbjct: 22 DFVNNYLSKGVVDRLEVVNKR-FVRVTFT 49
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 225 PAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 284
PAFL Q + A L+N + +T H + FWM P +A DL+DD+
Sbjct: 120 PAFLLPLNQEDNTNLARVLTN-----------HIHTGHHSSMFWMRVPLVAPEDLRDDII 168
Query: 285 --CATAYLQLYS 294
T + + YS
Sbjct: 169 ENAPTTHTEEYS 180
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 292 LYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 351
+YS +++Y + ++EKG+ ST DFV++S+ A++L+ K+
Sbjct: 91 IYSPTRIKYPM--------VRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRV 142
Query: 352 EFLVKWGCDLQSEHERYLTEEAFGGC 377
E E Y E FGG
Sbjct: 143 E-------------ETYGPEGVFGGS 155
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 292 LYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 351
+YS +++Y + ++EKG+ ST DFV++S+ A++L+ K+
Sbjct: 91 IYSPTRIKYPM--------VRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRV 142
Query: 352 EFLVKWGCDLQSEHERYLTEEAFGGC 377
E E Y E FGG
Sbjct: 143 E-------------ETYGPEGVFGGS 155
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 457 AGFGLGFERLVQFATGVENIRDAIPF 482
+G LG +RLV A G E++ D I F
Sbjct: 296 SGVALGVDRLVMLALGAESLADVIAF 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,557,615
Number of Sequences: 62578
Number of extensions: 592992
Number of successful extensions: 1268
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 42
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)