Query 011197
Match_columns 491
No_of_seqs 213 out of 1361
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02603 asparaginyl-tRNA synt 100.0 3E-113 7E-118 912.9 46.8 484 4-491 82-565 (565)
2 COG0017 AsnS Aspartyl/asparagi 100.0 4E-110 8E-115 850.8 39.0 428 10-491 3-435 (435)
3 PTZ00425 asparagine-tRNA ligas 100.0 1E-106 2E-111 860.8 45.6 474 11-491 54-586 (586)
4 PLN02221 asparaginyl-tRNA synt 100.0 2E-106 4E-111 860.9 43.5 475 7-491 28-572 (572)
5 PLN02532 asparagine-tRNA synth 100.0 3E-106 7E-111 860.3 42.5 477 5-490 23-632 (633)
6 TIGR00457 asnS asparaginyl-tRN 100.0 2E-105 4E-110 842.9 41.7 447 13-490 3-452 (453)
7 PRK03932 asnC asparaginyl-tRNA 100.0 7E-105 2E-109 839.7 43.4 445 11-490 3-449 (450)
8 KOG0554 Asparaginyl-tRNA synth 100.0 6E-103 1E-107 771.3 32.0 428 26-491 17-446 (446)
9 TIGR00458 aspS_arch aspartyl-t 100.0 2E-100 4E-105 801.5 42.4 418 13-490 2-427 (428)
10 PRK05159 aspC aspartyl-tRNA sy 100.0 6E-100 1E-104 800.8 40.2 423 10-490 3-436 (437)
11 PTZ00401 aspartyl-tRNA synthet 100.0 2.4E-97 5E-102 790.9 41.8 431 10-490 64-549 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 4.9E-97 1E-101 788.5 41.1 427 10-490 68-529 (530)
13 PLN02502 lysyl-tRNA synthetase 100.0 2.1E-94 4.6E-99 768.7 42.0 438 6-487 82-551 (553)
14 TIGR00499 lysS_bact lysyl-tRNA 100.0 2E-94 4.3E-99 765.7 41.0 427 6-487 26-494 (496)
15 PRK00484 lysS lysyl-tRNA synth 100.0 7.4E-94 1.6E-98 761.2 41.2 429 6-488 27-490 (491)
16 PRK12445 lysyl-tRNA synthetase 100.0 1.4E-93 3E-98 759.0 42.0 425 6-487 38-503 (505)
17 PTZ00417 lysine-tRNA ligase; P 100.0 1E-92 2.2E-97 758.0 40.3 440 6-487 106-583 (585)
18 PTZ00385 lysyl-tRNA synthetase 100.0 8.5E-92 1.8E-96 752.3 41.7 443 3-487 78-564 (659)
19 COG1190 LysU Lysyl-tRNA synthe 100.0 3E-92 6.5E-97 722.0 29.3 438 6-487 34-500 (502)
20 TIGR00459 aspS_bact aspartyl-t 100.0 1.2E-88 2.7E-93 726.4 41.2 428 10-489 2-557 (583)
21 COG0173 AspS Aspartyl-tRNA syn 100.0 1.4E-87 3E-92 690.4 37.2 411 10-489 2-560 (585)
22 PRK02983 lysS lysyl-tRNA synth 100.0 3.2E-87 6.9E-92 762.2 41.4 423 7-487 635-1092(1094)
23 PLN02903 aminoacyl-tRNA ligase 100.0 2.4E-85 5.1E-90 703.2 40.7 432 8-489 57-625 (652)
24 KOG0556 Aspartyl-tRNA syntheta 100.0 2.1E-86 4.5E-91 653.4 28.7 431 7-490 66-532 (533)
25 KOG1885 Lysyl-tRNA synthetase 100.0 1.5E-87 3.3E-92 671.9 18.4 438 6-486 78-555 (560)
26 PRK00476 aspS aspartyl-tRNA sy 100.0 4.6E-84 1E-88 696.4 39.8 430 9-489 3-562 (588)
27 KOG0555 Asparaginyl-tRNA synth 100.0 3.4E-84 7.3E-89 635.4 26.0 414 26-490 120-544 (545)
28 PRK12820 bifunctional aspartyl 100.0 1.3E-82 2.7E-87 688.4 38.9 434 9-489 4-578 (706)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 1.2E-80 2.6E-85 630.6 27.0 319 126-487 2-322 (322)
30 PRK06462 asparagine synthetase 100.0 2E-78 4.4E-83 616.6 26.3 318 127-490 9-334 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 6.8E-78 1.5E-82 616.0 21.5 315 128-487 2-335 (335)
32 KOG2411 Aspartyl-tRNA syntheta 100.0 1.9E-71 4.1E-76 558.8 31.6 412 10-488 34-600 (628)
33 cd00775 LysRS_core Lys_tRNA sy 100.0 3.5E-71 7.6E-76 562.6 27.4 297 142-486 2-328 (329)
34 TIGR00462 genX lysyl-tRNA synt 100.0 3E-70 6.4E-75 550.1 24.8 290 148-482 1-304 (304)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 5.7E-69 1.2E-73 531.2 25.7 260 148-486 1-268 (269)
36 PRK09350 poxB regulator PoxA; 100.0 2.7E-64 5.9E-69 507.3 25.3 291 145-479 2-306 (306)
37 cd00777 AspRS_core Asp tRNA sy 100.0 9.8E-64 2.1E-68 496.6 21.5 271 148-487 1-280 (280)
38 COG2269 Truncated, possibly in 100.0 1.6E-57 3.5E-62 433.2 18.4 297 143-486 11-321 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.8 9.2E-21 2E-25 169.1 13.1 122 11-143 2-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.8 2.1E-19 4.5E-24 152.9 13.0 101 31-137 1-103 (103)
41 cd04316 ND_PkAspRS_like_N ND_P 99.8 1.2E-18 2.7E-23 149.4 13.0 102 13-124 2-106 (108)
42 cd04322 LysRS_N LysRS_N: N-ter 99.8 2.7E-18 5.9E-23 147.2 13.0 104 31-139 1-108 (108)
43 cd04320 AspRS_cyto_N AspRS_cyt 99.7 1.2E-16 2.7E-21 135.5 12.3 89 31-123 1-100 (102)
44 cd04318 EcAsnRS_like_N EcAsnRS 99.7 2E-16 4.4E-21 128.7 12.1 81 32-114 2-82 (82)
45 cd04321 ScAspRS_mt_like_N ScAs 99.7 3.7E-16 8.1E-21 128.4 11.5 81 31-114 1-86 (86)
46 COG0016 PheS Phenylalanyl-tRNA 99.7 2.3E-16 5E-21 157.9 12.1 200 151-479 113-325 (335)
47 PRK00488 pheS phenylalanyl-tRN 99.7 3.9E-16 8.4E-21 157.2 10.9 120 151-292 110-235 (339)
48 PF01409 tRNA-synt_2d: tRNA sy 99.7 7.2E-16 1.6E-20 150.7 12.4 205 152-479 20-236 (247)
49 cd04323 AsnRS_cyto_like_N AsnR 99.7 1.1E-15 2.5E-20 124.9 11.5 80 31-114 1-84 (84)
50 PLN02853 Probable phenylalanyl 99.6 1.4E-15 3E-20 159.2 12.1 137 147-292 219-392 (492)
51 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.6 2.7E-15 5.8E-20 123.0 11.3 80 31-114 1-85 (85)
52 PTZ00326 phenylalanyl-tRNA syn 99.6 5.8E-15 1.3E-19 155.3 12.1 137 147-292 227-407 (494)
53 PRK09537 pylS pyrolysyl-tRNA s 99.6 3.9E-14 8.5E-19 146.4 14.1 126 140-292 190-332 (417)
54 cd00645 AsnA Asparagine synthe 99.5 8E-13 1.7E-17 128.7 17.6 267 154-482 3-299 (309)
55 TIGR02367 PylS pyrrolysyl-tRNA 99.5 2.6E-13 5.6E-18 140.0 14.1 116 147-288 238-364 (453)
56 PRK05425 asparagine synthetase 99.5 1.2E-12 2.5E-17 128.7 17.7 272 149-481 9-308 (327)
57 PTZ00213 asparagine synthetase 99.5 3.2E-12 6.8E-17 126.0 18.6 67 413-481 266-334 (348)
58 cd00768 class_II_aaRS-like_cor 99.4 3.1E-13 6.7E-18 128.3 9.1 101 151-278 2-111 (211)
59 PLN02788 phenylalanine-tRNA sy 99.4 7.9E-13 1.7E-17 136.4 12.4 102 152-276 71-179 (402)
60 PRK04172 pheS phenylalanyl-tRN 99.3 2.9E-11 6.2E-16 130.0 18.4 141 144-292 228-400 (489)
61 TIGR00669 asnA aspartate--ammo 99.3 8.1E-11 1.8E-15 115.6 18.6 278 148-481 5-315 (330)
62 TIGR00469 pheS_mito phenylalan 99.3 1.4E-11 3E-16 128.1 12.7 114 133-277 34-166 (460)
63 TIGR00468 pheS phenylalanyl-tR 99.3 1.9E-11 4.2E-16 122.9 11.9 120 151-292 74-200 (294)
64 cd00773 HisRS-like_core Class 98.9 8.3E-08 1.8E-12 95.1 19.3 101 148-278 2-116 (261)
65 PF01336 tRNA_anti-codon: OB-f 98.9 2E-08 4.3E-13 79.4 11.0 74 32-112 1-75 (75)
66 TIGR00470 sepS O-phosphoseryl- 98.8 3.9E-08 8.4E-13 102.0 11.3 49 244-292 208-258 (533)
67 TIGR00442 hisS histidyl-tRNA s 98.7 2.9E-07 6.2E-12 96.8 14.7 104 145-278 11-131 (397)
68 KOG2784 Phenylalanyl-tRNA synt 98.7 1.3E-08 2.9E-13 101.2 4.2 137 144-292 211-383 (483)
69 cd00496 PheRS_alpha_core Pheny 98.6 2.8E-07 6.1E-12 88.9 10.8 119 153-292 5-130 (218)
70 PF00587 tRNA-synt_2b: tRNA sy 98.4 1.2E-06 2.5E-11 81.4 8.2 113 150-292 1-133 (173)
71 PLN02972 Histidyl-tRNA synthet 98.4 1.6E-05 3.5E-10 88.4 18.1 120 143-292 336-470 (763)
72 KOG2783 Phenylalanyl-tRNA synt 98.3 1.6E-06 3.4E-11 87.4 8.3 57 220-277 126-184 (436)
73 COG0124 HisS Histidyl-tRNA syn 98.2 1.6E-05 3.4E-10 83.7 14.2 114 147-292 17-153 (429)
74 cd00778 ProRS_core_arch_euk Pr 98.1 6.6E-06 1.4E-10 81.6 8.3 121 147-292 31-170 (261)
75 cd00772 ProRS_core Prolyl-tRNA 98.1 4.2E-05 9E-10 76.0 12.0 120 147-292 31-170 (264)
76 cd00670 Gly_His_Pro_Ser_Thr_tR 98.0 2.4E-05 5.3E-10 75.8 9.7 118 149-292 3-138 (235)
77 PRK00037 hisS histidyl-tRNA sy 98.0 4.5E-05 9.7E-10 80.6 10.9 116 145-291 15-149 (412)
78 cd00779 ProRS_core_prok Prolyl 97.9 4.1E-05 8.8E-10 75.7 9.5 117 147-292 30-164 (255)
79 TIGR00409 proS_fam_II prolyl-t 97.9 7.4E-05 1.6E-09 81.9 10.6 117 145-290 44-178 (568)
80 PRK09194 prolyl-tRNA synthetas 97.8 0.00019 4.2E-09 78.9 12.1 117 145-290 44-178 (565)
81 COG2502 AsnA Asparagine synthe 97.8 0.002 4.4E-08 61.9 17.1 69 411-481 246-315 (330)
82 cd00771 ThrRS_core Threonyl-tR 97.7 0.00018 3.9E-09 72.8 9.8 115 147-292 29-162 (298)
83 PRK12293 hisZ ATP phosphoribos 97.7 0.00027 5.9E-09 70.8 10.5 109 146-292 17-138 (281)
84 TIGR00414 serS seryl-tRNA synt 97.7 0.0002 4.3E-09 75.8 9.9 115 145-292 170-306 (418)
85 PRK05431 seryl-tRNA synthetase 97.6 0.00017 3.6E-09 76.5 9.0 117 145-292 167-304 (425)
86 cd00774 GlyRS-like_core Glycyl 97.6 0.00016 3.4E-09 71.5 8.0 98 147-276 31-142 (254)
87 PRK12305 thrS threonyl-tRNA sy 97.6 0.00026 5.7E-09 78.1 10.0 119 143-292 201-339 (575)
88 TIGR00443 hisZ_biosyn_reg ATP 97.6 0.00026 5.6E-09 72.1 9.2 115 146-291 6-138 (314)
89 TIGR00418 thrS threonyl-tRNA s 97.6 0.00046 1E-08 75.9 11.8 117 144-292 196-333 (563)
90 PRK12292 hisZ ATP phosphoribos 97.6 0.00036 7.8E-09 73.3 10.4 117 145-292 14-150 (391)
91 cd00770 SerRS_core Seryl-tRNA 97.6 0.00031 6.8E-09 71.0 9.4 115 145-292 49-185 (297)
92 PRK08661 prolyl-tRNA synthetas 97.6 0.00031 6.7E-09 75.6 9.7 121 146-292 42-181 (477)
93 PRK12444 threonyl-tRNA synthet 97.5 0.00037 8E-09 77.9 10.4 115 147-292 273-406 (639)
94 CHL00201 syh histidine-tRNA sy 97.5 0.00043 9.3E-09 73.6 10.3 117 146-292 16-154 (430)
95 TIGR00408 proS_fam_I prolyl-tR 97.5 0.00024 5.3E-09 76.3 8.4 121 147-292 37-176 (472)
96 PLN02530 histidine-tRNA ligase 97.5 0.00055 1.2E-08 73.9 10.8 117 144-292 80-216 (487)
97 PRK00413 thrS threonyl-tRNA sy 97.5 0.00062 1.3E-08 76.1 11.3 119 143-292 265-403 (638)
98 PF13393 tRNA-synt_His: Histid 97.5 0.00076 1.6E-08 68.4 10.6 115 145-291 7-139 (311)
99 PRK12420 histidyl-tRNA synthet 97.5 0.00071 1.5E-08 71.8 10.7 117 144-292 14-151 (423)
100 PLN02908 threonyl-tRNA synthet 97.4 0.0006 1.3E-08 76.7 10.4 119 143-292 316-453 (686)
101 PRK12325 prolyl-tRNA synthetas 97.4 0.00079 1.7E-08 71.8 10.8 116 146-292 45-180 (439)
102 PRK14799 thrS threonyl-tRNA sy 97.4 0.00081 1.8E-08 73.3 10.0 119 143-292 163-300 (545)
103 PRK12421 ATP phosphoribosyltra 97.3 0.0016 3.5E-08 68.4 11.2 116 146-292 19-153 (392)
104 PLN02837 threonine-tRNA ligase 97.2 0.0012 2.7E-08 73.2 9.8 118 144-292 243-380 (614)
105 PRK03991 threonyl-tRNA synthet 97.2 0.0017 3.8E-08 71.8 10.7 119 144-292 223-361 (613)
106 PRK04173 glycyl-tRNA synthetas 97.0 0.0017 3.6E-08 69.6 8.1 45 245-292 188-236 (456)
107 PRK12295 hisZ ATP phosphoribos 96.8 0.007 1.5E-07 63.2 10.5 106 152-292 8-132 (373)
108 cd04489 ExoVII_LU_OBF ExoVII_L 96.7 0.024 5.3E-07 44.9 10.6 73 32-110 2-75 (78)
109 PLN02678 seryl-tRNA synthetase 96.7 0.0042 9.2E-08 66.0 7.2 121 146-292 172-311 (448)
110 cd04487 RecJ_OBF2_like RecJ_OB 96.6 0.022 4.8E-07 45.1 9.1 73 32-112 1-73 (73)
111 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.5 0.04 8.6E-07 45.6 10.9 76 32-114 2-79 (95)
112 COG0442 ProS Prolyl-tRNA synth 96.5 0.011 2.4E-07 63.5 9.1 123 146-297 45-185 (500)
113 PRK12294 hisZ ATP phosphoribos 96.2 0.041 8.8E-07 54.9 11.0 101 144-282 3-115 (272)
114 PF13742 tRNA_anti_2: OB-fold 96.1 0.049 1.1E-06 45.8 9.1 77 29-110 21-98 (99)
115 cd04483 hOBFC1_like hOBFC1_lik 95.9 0.088 1.9E-06 43.6 9.9 70 34-110 2-90 (92)
116 COG0172 SerS Seryl-tRNA synthe 95.7 0.026 5.7E-07 59.3 7.2 117 147-292 173-307 (429)
117 PLN02320 seryl-tRNA synthetase 95.6 0.041 8.8E-07 59.2 8.5 121 147-292 232-367 (502)
118 TIGR00415 serS_MJ seryl-tRNA s 95.6 0.059 1.3E-06 57.8 9.6 140 147-292 222-386 (520)
119 PRK00960 seryl-tRNA synthetase 95.4 0.022 4.7E-07 61.6 5.5 141 145-292 220-386 (517)
120 PF10451 Stn1: Telomere regula 95.3 0.11 2.3E-06 51.4 9.6 79 28-114 65-149 (256)
121 cd04482 RPA2_OBF_like RPA2_OBF 95.1 0.2 4.4E-06 41.4 9.2 73 33-115 2-77 (91)
122 COG1107 Archaea-specific RecJ- 94.8 0.053 1.2E-06 58.1 6.2 79 27-113 211-289 (715)
123 PF04076 BOF: Bacterial OB fol 94.5 0.24 5.3E-06 41.9 8.3 81 11-110 22-102 (103)
124 KOG2324 Prolyl-tRNA synthetase 94.3 0.24 5.1E-06 50.5 9.1 125 146-301 50-194 (457)
125 cd03524 RPA2_OBF_family RPA2_O 94.2 0.55 1.2E-05 35.5 9.4 69 33-109 1-73 (75)
126 PRK09616 pheT phenylalanyl-tRN 94.2 0.27 5.9E-06 54.1 10.2 113 151-292 361-488 (552)
127 cd04490 PolII_SU_OBF PolII_SU_ 94.2 0.64 1.4E-05 37.3 9.8 67 32-109 2-72 (79)
128 PRK07373 DNA polymerase III su 94.1 0.28 6E-06 52.5 9.8 77 28-112 279-360 (449)
129 TIGR00156 conserved hypothetic 93.9 0.49 1.1E-05 41.5 9.3 80 12-110 46-125 (126)
130 PF12869 tRNA_anti-like: tRNA_ 93.8 0.25 5.5E-06 44.0 7.6 83 11-95 44-132 (144)
131 cd04492 YhaM_OBF_like YhaM_OBF 93.7 1.2 2.6E-05 35.1 10.7 62 45-115 18-79 (83)
132 COG0441 ThrS Threonyl-tRNA syn 93.7 0.1 2.2E-06 57.3 5.7 113 146-292 218-352 (589)
133 COG3111 Periplasmic protein wi 93.5 0.57 1.2E-05 40.5 8.6 83 11-112 45-127 (128)
134 cd04485 DnaE_OBF DnaE_OBF: A s 93.1 0.55 1.2E-05 36.9 7.8 71 34-113 2-78 (84)
135 PRK10053 hypothetical protein; 92.5 1 2.2E-05 39.8 9.0 80 12-110 50-129 (130)
136 cd04479 RPA3 RPA3: A subfamily 92.4 1.3 2.8E-05 37.3 9.4 68 27-114 13-80 (101)
137 PRK15491 replication factor A; 92.3 0.86 1.9E-05 47.6 9.9 93 11-118 57-159 (374)
138 PRK05672 dnaE2 error-prone DNA 91.9 0.7 1.5E-05 54.5 9.6 79 28-114 952-1033(1046)
139 COG5235 RFA2 Single-stranded D 91.9 1.1 2.4E-05 42.3 8.9 94 11-111 41-142 (258)
140 PF08661 Rep_fac-A_3: Replicat 91.8 0.96 2.1E-05 38.6 8.0 59 27-97 16-74 (109)
141 PRK07374 dnaE DNA polymerase I 91.6 0.75 1.6E-05 54.8 9.4 77 28-112 999-1080(1170)
142 PRK14699 replication factor A; 91.6 1.3 2.9E-05 47.8 10.5 96 12-122 58-163 (484)
143 COG4085 Predicted RNA-binding 90.8 1.7 3.7E-05 40.6 9.0 74 27-107 49-128 (204)
144 PRK13902 alaS alanyl-tRNA synt 90.7 0.38 8.2E-06 55.8 5.7 60 401-483 197-258 (900)
145 PRK06826 dnaE DNA polymerase I 90.3 1.3 2.8E-05 52.7 9.8 80 28-114 990-1074(1151)
146 KOG1936 Histidyl-tRNA syntheta 89.7 0.86 1.9E-05 47.6 6.7 117 147-291 73-204 (518)
147 TIGR03683 A-tRNA_syn_arch alan 89.6 0.63 1.4E-05 54.0 6.3 28 455-483 235-262 (902)
148 PRK05673 dnaE DNA polymerase I 89.6 1.2 2.6E-05 53.1 8.7 79 28-114 976-1059(1135)
149 PRK06461 single-stranded DNA-b 89.4 4.4 9.5E-05 35.7 10.3 84 11-114 4-100 (129)
150 cd00769 PheRS_beta_core Phenyl 89.3 1.3 2.9E-05 41.8 7.4 26 153-178 4-29 (198)
151 PF03100 CcmE: CcmE; InterPro 89.2 6.7 0.00014 34.6 11.3 85 12-118 37-126 (131)
152 PRK06920 dnaE DNA polymerase I 89.1 1.7 3.8E-05 51.4 9.5 78 28-113 942-1024(1107)
153 COG3705 HisZ ATP phosphoribosy 88.4 1.2 2.6E-05 46.5 6.9 101 147-277 16-128 (390)
154 PRK07217 replication factor A; 88.3 6.9 0.00015 39.6 11.8 92 12-121 73-167 (311)
155 COG2024 Phenylalanyl-tRNA synt 86.6 0.4 8.7E-06 49.1 2.0 36 445-480 313-349 (536)
156 PRK07279 dnaE DNA polymerase I 85.5 3.6 7.7E-05 48.4 9.2 74 29-110 884-963 (1034)
157 cd04474 RPA1_DBD_A RPA1_DBD_A: 84.8 5.3 0.00011 33.6 7.8 74 30-107 10-97 (104)
158 PLN02900 alanyl-tRNA synthetas 84.5 7.2 0.00016 45.6 11.1 25 455-479 239-263 (936)
159 cd04491 SoSSB_OBF SoSSB_OBF: A 84.1 10 0.00022 30.2 8.9 55 45-110 22-77 (82)
160 PRK01584 alanyl-tRNA synthetas 84.1 9.1 0.0002 42.4 11.2 28 455-482 224-251 (594)
161 PRK00252 alaS alanyl-tRNA synt 83.8 9.7 0.00021 44.3 11.8 27 455-481 219-245 (865)
162 cd04484 polC_OBF polC_OBF: A s 83.4 22 0.00047 28.6 10.8 73 32-110 2-80 (82)
163 COG0013 AlaS Alanyl-tRNA synth 83.4 3.2 7E-05 47.6 7.5 29 455-483 223-251 (879)
164 PRK13480 3'-5' exoribonuclease 83.0 9.8 0.00021 38.8 10.2 79 29-116 11-94 (314)
165 cd04488 RecG_wedge_OBF RecG_we 83.0 16 0.00035 27.6 9.5 64 34-106 2-69 (75)
166 KOG3108 Single-stranded DNA-bi 83.0 8.8 0.00019 38.1 9.5 76 30-112 69-145 (265)
167 TIGR00344 alaS alanine--tRNA l 82.6 5 0.00011 46.6 8.8 25 455-479 213-237 (851)
168 PRK12366 replication factor A; 82.3 8.3 0.00018 43.3 10.3 92 11-114 279-382 (637)
169 KOG1035 eIF-2alpha kinase GCN2 81.4 3.8 8.2E-05 48.3 7.1 115 147-292 931-1054(1351)
170 PRK07211 replication factor A; 80.9 10 0.00022 41.0 9.8 82 12-109 54-146 (485)
171 PRK14699 replication factor A; 80.8 9.4 0.0002 41.3 9.6 83 28-116 285-377 (484)
172 PRK07218 replication factor A; 80.7 12 0.00026 39.8 10.2 83 11-114 58-148 (423)
173 PRK12292 hisZ ATP phosphoribos 80.6 1.7 3.6E-05 45.7 3.8 45 403-469 274-319 (391)
174 PRK12421 ATP phosphoribosyltra 80.6 1.2 2.7E-05 46.8 2.8 48 403-472 281-329 (392)
175 COG1570 XseA Exonuclease VII, 80.5 7.8 0.00017 41.1 8.6 77 29-111 23-100 (440)
176 COG0423 GRS1 Glycyl-tRNA synth 78.9 0.94 2E-05 48.6 1.3 33 148-180 40-74 (558)
177 PRK15491 replication factor A; 78.7 15 0.00032 38.5 10.0 81 29-116 176-267 (374)
178 PRK00286 xseA exodeoxyribonucl 78.0 14 0.0003 39.4 9.9 78 29-113 23-102 (438)
179 PRK00036 primosomal replicatio 78.0 8.1 0.00018 32.9 6.4 52 60-115 48-99 (107)
180 PRK07459 single-stranded DNA-b 77.8 40 0.00086 29.3 11.0 52 61-115 46-104 (121)
181 TIGR00237 xseA exodeoxyribonuc 77.6 14 0.00029 39.6 9.6 75 31-112 19-95 (432)
182 KOG2509 Seryl-tRNA synthetase 77.0 1.4 3.1E-05 46.1 1.9 35 145-179 182-216 (455)
183 PRK07080 hypothetical protein; 76.7 3.1 6.8E-05 42.1 4.2 47 245-292 153-200 (317)
184 PRK14894 glycyl-tRNA synthetas 76.7 1.5 3.2E-05 47.3 2.0 33 147-179 39-73 (539)
185 TIGR00443 hisZ_biosyn_reg ATP 76.2 3.3 7.2E-05 42.1 4.4 47 403-471 266-313 (314)
186 PF15072 DUF4539: Domain of un 74.8 14 0.0003 30.3 6.7 59 33-97 6-65 (86)
187 PRK13165 cytochrome c-type bio 74.7 49 0.0011 30.3 11.0 75 27-119 55-134 (160)
188 cd05694 S1_Rrp5_repeat_hs2_sc2 74.6 19 0.00041 28.3 7.4 47 33-90 7-54 (74)
189 PRK10917 ATP-dependent DNA hel 74.2 26 0.00057 39.7 11.3 76 27-111 57-136 (681)
190 COG1571 Predicted DNA-binding 73.5 16 0.00035 38.5 8.5 74 29-113 266-342 (421)
191 PRK13150 cytochrome c-type bio 73.4 57 0.0012 29.9 11.0 75 27-119 55-134 (159)
192 COG3689 Predicted membrane pro 73.3 15 0.00033 36.1 7.7 88 23-116 169-263 (271)
193 PRK06386 replication factor A; 71.7 48 0.001 34.5 11.4 86 12-119 108-201 (358)
194 PRK07218 replication factor A; 71.7 42 0.0009 35.8 11.3 77 28-116 171-255 (423)
195 PLN02734 glycyl-tRNA synthetas 70.6 1.6 3.4E-05 48.9 0.4 34 147-180 108-142 (684)
196 PRK02801 primosomal replicatio 70.1 19 0.00041 30.2 6.8 48 61-112 50-100 (101)
197 CHL00201 syh histidine-tRNA sy 70.1 6.5 0.00014 41.9 5.0 19 454-472 299-317 (430)
198 PRK12366 replication factor A; 70.1 21 0.00045 40.2 9.1 82 11-108 63-154 (637)
199 TIGR00389 glyS_dimeric glycyl- 69.9 1.5 3.2E-05 48.1 0.0 34 147-180 36-70 (551)
200 TIGR00471 pheT_arch phenylalan 69.1 28 0.00061 38.4 9.8 116 149-292 362-490 (551)
201 PRK12293 hisZ ATP phosphoribos 67.7 5.5 0.00012 40.0 3.6 40 403-471 241-280 (281)
202 PRK07211 replication factor A; 65.5 37 0.0008 36.7 9.4 79 29-116 171-260 (485)
203 PRK07135 dnaE DNA polymerase I 64.1 21 0.00045 42.0 7.8 63 28-96 896-962 (973)
204 PRK13254 cytochrome c-type bio 64.1 1.1E+02 0.0024 27.6 10.9 86 12-119 38-127 (148)
205 KOG0188 Alanyl-tRNA synthetase 62.4 46 0.00099 37.6 9.4 52 240-292 54-115 (895)
206 PLN02265 probable phenylalanyl 62.3 30 0.00066 38.6 8.4 114 150-292 398-527 (597)
207 TIGR00617 rpa1 replication fac 62.1 50 0.0011 36.9 10.1 92 11-116 180-286 (608)
208 PRK08402 replication factor A; 59.4 52 0.0011 34.2 9.0 86 12-112 63-159 (355)
209 PF03590 AsnA: Aspartate-ammon 58.1 69 0.0015 31.2 8.9 114 152-292 7-137 (244)
210 TIGR00643 recG ATP-dependent D 57.7 62 0.0013 36.3 10.0 63 27-96 30-97 (630)
211 PRK06642 single-stranded DNA-b 53.7 1.4E+02 0.0031 27.0 9.9 36 80-115 72-117 (152)
212 cd04486 YhcR_OBF_like YhcR_OBF 53.5 1.1E+02 0.0024 24.2 8.5 67 34-113 2-76 (78)
213 PRK05813 single-stranded DNA-b 53.4 1.5E+02 0.0033 28.6 10.5 82 27-115 6-103 (219)
214 PF00436 SSB: Single-strand bi 53.2 35 0.00075 28.0 5.5 33 80-112 66-104 (104)
215 PRK04036 DNA polymerase II sma 51.9 49 0.0011 36.1 7.8 62 28-94 152-216 (504)
216 PF02091 tRNA-synt_2e: Glycyl- 51.6 11 0.00023 37.1 2.3 57 400-481 120-177 (284)
217 PF15513 DUF4651: Domain of un 51.0 19 0.00041 27.5 3.1 23 149-171 2-24 (62)
218 KOG2298 Glycyl-tRNA synthetase 50.8 3.5 7.6E-05 43.7 -1.2 24 248-273 214-241 (599)
219 cd04496 SSB_OBF SSB_OBF: A sub 50.3 52 0.0011 26.6 6.1 51 59-112 44-100 (100)
220 cd04452 S1_IF2_alpha S1_IF2_al 49.6 1.1E+02 0.0024 23.3 7.6 50 33-89 6-59 (76)
221 PRK06752 single-stranded DNA-b 48.3 40 0.00086 28.7 5.1 36 80-115 65-106 (112)
222 PF13567 DUF4131: Domain of un 48.0 1E+02 0.0022 27.0 8.2 62 29-97 75-146 (176)
223 cd00733 GlyRS_alpha_core Class 47.9 13 0.00028 36.4 2.2 57 401-482 122-179 (279)
224 PRK09348 glyQ glycyl-tRNA synt 47.8 13 0.00028 36.5 2.1 58 401-482 126-183 (283)
225 cd05698 S1_Rrp5_repeat_hs6_sc5 46.6 1.2E+02 0.0027 22.7 7.5 48 33-89 3-54 (70)
226 PF04057 Rep-A_N: Replication 45.7 1.4E+02 0.0031 24.9 8.0 62 47-113 39-100 (101)
227 PRK08486 single-stranded DNA-b 45.6 41 0.00089 31.5 5.1 37 80-116 67-109 (182)
228 cd00673 AlaRS_core Alanyl-tRNA 45.4 61 0.0013 31.6 6.4 49 243-292 55-109 (232)
229 PRK06253 O-phosphoseryl-tRNA s 44.6 23 0.0005 38.5 3.7 48 245-292 210-259 (529)
230 PRK13159 cytochrome c-type bio 42.7 2.7E+02 0.0058 25.5 10.7 85 12-119 38-127 (155)
231 PRK06253 O-phosphoseryl-tRNA s 41.9 23 0.0005 38.5 3.2 33 455-487 317-351 (529)
232 PRK06863 single-stranded DNA-b 41.8 53 0.0012 30.4 5.2 52 61-115 54-111 (168)
233 cd00496 PheRS_alpha_core Pheny 41.8 16 0.00035 35.0 1.9 25 455-479 188-212 (218)
234 PF09104 BRCA-2_OB3: BRCA2, ol 41.5 2.7E+02 0.0058 25.1 11.0 86 28-116 17-103 (143)
235 PRK07275 single-stranded DNA-b 41.2 53 0.0012 30.1 5.1 52 61-115 49-106 (162)
236 PRK00448 polC DNA polymerase I 40.9 1.8E+02 0.0038 36.1 10.7 81 28-113 235-321 (1437)
237 PRK06958 single-stranded DNA-b 40.9 56 0.0012 30.6 5.2 52 61-115 54-111 (182)
238 PF03843 Slp: Outer membrane l 40.8 94 0.002 28.4 6.7 68 24-97 29-108 (160)
239 cd05705 S1_Rrp5_repeat_hs14 S1 40.6 69 0.0015 25.0 5.0 48 33-89 6-60 (74)
240 TIGR00388 glyQ glycyl-tRNA syn 40.4 18 0.00039 35.6 2.0 58 401-483 123-181 (293)
241 PRK06751 single-stranded DNA-b 40.3 56 0.0012 30.3 5.1 52 61-115 49-106 (173)
242 PF12857 TOBE_3: TOBE-like dom 40.1 1.4E+02 0.0031 22.0 6.5 50 33-89 6-56 (58)
243 PRK00629 pheT phenylalanyl-tRN 40.1 1.2E+02 0.0025 35.2 8.8 28 151-178 489-516 (791)
244 TIGR00621 ssb single stranded 39.6 97 0.0021 28.3 6.6 36 80-115 69-110 (164)
245 CHL00192 syfB phenylalanyl-tRN 38.6 1.3E+02 0.0028 34.3 8.8 28 151-178 400-427 (704)
246 COG1200 RecG RecG-like helicas 38.5 3.2E+02 0.007 30.8 11.4 78 27-113 58-139 (677)
247 cd05707 S1_Rrp5_repeat_sc11 S1 38.2 92 0.002 23.4 5.4 48 33-89 3-54 (68)
248 COG2024 Phenylalanyl-tRNA synt 37.3 18 0.00039 37.5 1.5 48 245-292 209-258 (536)
249 TIGR00594 polc DNA-directed DN 37.3 63 0.0014 38.5 6.1 36 28-65 980-1021(1022)
250 PRK00037 hisS histidyl-tRNA sy 36.2 32 0.00069 36.2 3.3 60 403-483 262-325 (412)
251 PRK08763 single-stranded DNA-b 35.4 78 0.0017 29.1 5.2 36 80-115 70-111 (164)
252 cd05708 S1_Rrp5_repeat_sc12 S1 35.1 2E+02 0.0043 21.8 7.5 49 33-89 5-57 (77)
253 PRK06293 single-stranded DNA-b 34.9 81 0.0018 29.0 5.2 52 61-115 45-102 (161)
254 TIGR01405 polC_Gram_pos DNA po 34.5 3.1E+02 0.0067 33.5 11.3 81 28-113 6-92 (1213)
255 PF03459 TOBE: TOBE domain; I 33.8 1.9E+02 0.0042 21.3 6.5 51 33-89 6-56 (64)
256 PRK06386 replication factor A; 33.4 3E+02 0.0065 28.7 9.7 78 12-109 3-88 (358)
257 PRK07252 hypothetical protein; 32.6 3.3E+02 0.0071 23.5 11.0 48 33-89 6-57 (120)
258 TIGR00472 pheT_bact phenylalan 31.9 1.5E+02 0.0033 34.3 8.1 23 156-178 498-520 (798)
259 PRK05813 single-stranded DNA-b 31.9 1.3E+02 0.0028 29.0 6.4 83 28-116 108-211 (219)
260 PRK08059 general stress protei 31.8 2E+02 0.0044 24.8 7.1 66 33-109 10-79 (123)
261 COG0752 GlyQ Glycyl-tRNA synth 31.7 37 0.00081 33.1 2.5 60 401-484 127-186 (298)
262 KOG1637 Threonyl-tRNA syntheta 31.7 39 0.00085 36.1 2.9 33 147-179 191-223 (560)
263 COG3390 Uncharacterized protei 31.2 2.7E+02 0.0058 26.3 7.8 78 30-111 46-129 (196)
264 PRK07274 single-stranded DNA-b 31.1 1.1E+02 0.0025 26.8 5.4 35 80-114 65-104 (131)
265 PRK12420 histidyl-tRNA synthet 30.7 46 0.00099 35.3 3.3 50 404-472 279-331 (423)
266 COG0423 GRS1 Glycyl-tRNA synth 30.5 41 0.00089 36.5 2.9 30 246-278 190-223 (558)
267 PF15490 Ten1_2: Telomere-capp 30.0 3.7E+02 0.008 23.3 14.8 91 10-112 6-96 (118)
268 cd04497 hPOT1_OB1_like hPOT1_O 29.6 3.4E+02 0.0074 23.8 8.3 94 12-116 4-107 (138)
269 PRK08182 single-stranded DNA-b 28.7 1.2E+02 0.0026 27.3 5.2 52 61-115 56-113 (148)
270 PRK05807 hypothetical protein; 28.4 3.9E+02 0.0084 23.6 8.4 65 33-109 8-75 (136)
271 cd05692 S1_RPS1_repeat_hs4 S1_ 28.4 2.4E+02 0.0051 20.5 7.2 48 33-89 3-54 (69)
272 PLN02530 histidine-tRNA ligase 28.3 50 0.0011 35.8 3.2 47 404-471 342-390 (487)
273 PRK13732 single-stranded DNA-b 28.1 1.3E+02 0.0029 27.9 5.5 38 80-117 72-117 (175)
274 TIGR00418 thrS threonyl-tRNA s 27.5 30 0.00065 38.2 1.3 17 456-472 442-458 (563)
275 cd05706 S1_Rrp5_repeat_sc10 S1 27.5 2.7E+02 0.0059 21.0 8.0 50 33-89 6-57 (73)
276 PRK06763 F0F1 ATP synthase sub 27.0 1.3E+02 0.0029 28.5 5.2 53 31-96 39-91 (213)
277 cd04461 S1_Rrp5_repeat_hs8_sc7 26.6 3.1E+02 0.0068 21.4 6.9 48 33-89 17-68 (83)
278 TIGR00389 glyS_dimeric glycyl- 26.4 64 0.0014 35.6 3.5 30 246-278 186-219 (551)
279 COG2965 PriB Primosomal replic 25.6 1.7E+02 0.0036 24.6 5.0 33 80-112 68-102 (103)
280 PF04046 PSP: PSP; InterPro: 24.9 92 0.002 22.6 2.9 23 434-456 12-35 (48)
281 cd04472 S1_PNPase S1_PNPase: P 24.7 2.1E+02 0.0045 21.0 5.3 48 33-89 3-54 (68)
282 PRK12295 hisZ ATP phosphoribos 24.6 60 0.0013 33.9 2.9 47 403-469 322-370 (373)
283 TIGR00638 Mop molybdenum-pteri 23.9 3.1E+02 0.0067 20.4 6.8 51 33-89 8-58 (69)
284 COG0072 PheT Phenylalanyl-tRNA 23.8 1.7E+02 0.0038 33.0 6.5 31 148-178 350-380 (650)
285 PF00575 S1: S1 RNA binding do 23.8 2.1E+02 0.0045 21.6 5.2 48 33-89 7-58 (74)
286 PRK08582 hypothetical protein; 23.3 2.3E+02 0.005 25.1 6.0 48 33-89 8-59 (139)
287 PTZ00148 40S ribosomal protein 22.4 1.3E+02 0.0028 28.6 4.3 57 37-95 42-111 (205)
288 cd05689 S1_RPS1_repeat_ec4 S1_ 22.1 2.1E+02 0.0044 21.6 4.8 48 33-89 6-58 (72)
289 TIGR00752 slp outer membrane l 21.7 4.5E+02 0.0098 24.6 7.8 83 24-113 43-143 (182)
290 KOG3416 Predicted nucleic acid 21.0 2.6E+02 0.0055 24.7 5.4 67 12-91 5-73 (134)
291 PRK09010 single-stranded DNA-b 20.9 1.8E+02 0.004 27.1 5.0 36 80-115 72-116 (177)
292 PF01411 tRNA-synt_2c: tRNA sy 20.9 1.6E+02 0.0035 32.5 5.4 49 242-291 53-111 (552)
293 cd05687 S1_RPS1_repeat_ec1_hs1 20.8 2.7E+02 0.0058 20.8 5.2 48 33-89 3-54 (70)
294 cd04477 RPA1N RPA1N: A subfami 20.7 1.1E+02 0.0025 25.4 3.3 57 50-112 40-96 (97)
295 cd04453 S1_RNase_E S1_RNase_E: 20.5 3.6E+02 0.0078 21.7 6.1 50 33-89 10-66 (88)
296 COG1241 MCM2 Predicted ATPase 20.5 7.3E+02 0.016 28.3 10.4 35 80-114 210-253 (682)
297 cd00673 AlaRS_core Alanyl-tRNA 20.4 60 0.0013 31.6 1.7 25 152-176 2-26 (232)
No 1
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=3e-113 Score=912.89 Aligned_cols=484 Identities=87% Similarity=1.369 Sum_probs=439.9
Q ss_pred CCCCcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 4 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
+.+++..++.|+++...-..+....|++|+|+|||+++|.+|+++|++|+|+++..+||||++++...++.+..+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 82 AVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 35677788999999843222345789999999999999999999999999999866899999877655666543349999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHh
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~ 163 (491)
|+|.|+|+|++++++++.+||++++++||++|++++|++++.++.+++|.++|||+|++.+++++|+||++++++|+||.
T Consensus 162 s~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~ 241 (565)
T PLN02603 162 ASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 241 (565)
T ss_pred CEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988878899999999999999888999988899999999999999999999999999999999999999
Q ss_pred hCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccC
Q 011197 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATAL 243 (491)
Q Consensus 164 ~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~ 243 (491)
++||+||+||+|++++|||+++.|.||+..+..+|++.+....++++.++..+.+.+||++++||++|||||+|++++|+
T Consensus 242 ~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l 321 (565)
T PLN02603 242 ENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 321 (565)
T ss_pred HCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcc
Confidence 99999999999999999999999999887655444433333446666666666778999999999999999999999999
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhh
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDR 323 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (491)
+|||+||||||||+++|+|||+||||||+|++|+|++|+|+++|++|++ +++.+++++.+++++.+++.+.++.+.
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~----~~~~v~~~~~~el~~~~~~~~~~~~~~ 397 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQY----VVKYILENCKEDMEFFNTWIEKGIIDR 397 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHH----HHHHHHcccHhHHHhcCCcccccHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999888877788888
Q ss_pred hhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceE
Q 011197 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 403 (491)
Q Consensus 324 l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~ 403 (491)
+++.++.||++|||+||+++|++.+.+++.+++||.+|+.++|++|.+.+++++||||+|||..++||||+.++|+.+++
T Consensus 398 l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~ 477 (565)
T PLN02603 398 LSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVA 477 (565)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeE
Confidence 88888889999999999999998877666668899999999999999877655799999999999999998888888999
Q ss_pred EEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccC
Q 011197 404 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 404 ~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
+|||++||+|||+||+||+|+++++.++++++|+++++|+|||++++||+|||||||||||||+|++||.+|||||++||
T Consensus 478 ~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 478 AMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred EEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 011197 484 RTPGSVEF 491 (491)
Q Consensus 484 r~~~~~~~ 491 (491)
|++|+|.+
T Consensus 558 R~~g~~~~ 565 (565)
T PLN02603 558 RVPGSAEF 565 (565)
T ss_pred CCCCCCCC
Confidence 99999975
No 2
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-110 Score=850.80 Aligned_cols=428 Identities=46% Similarity=0.777 Sum_probs=393.3
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (491)
.+++++|+... ..+++|+|+|||+++|.+|+++||.|||++|+ ||||++++. ..++ ++. |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788898864 34499999999999999999999999999986 999998642 2344 667 9999999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC-hhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhC
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~-~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (491)
.|+|+|++++.+.|++||++++++|++.+.+++|++++.++ .++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999889999999999999999667999999886 99999999999999999999999999999999999999
Q ss_pred CcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCc
Q 011197 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (491)
Q Consensus 166 ~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~r 245 (491)
||+||+||+|+++++||++++|.+ +||+.++||+||||||+|+++++++|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v------------------------------~yf~~~a~LtqS~QLyke~~~~al~r 201 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV------------------------------DYFDKEAYLTQSPQLYKEALAAALER 201 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE------------------------------eecCcceEEecCHHHHHHHHHHHhCc
Confidence 999999999999999999999987 78999999999999999988888999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 325 (491)
||+|||+||+|+++|+|||+||||+|.||+|++++|+|+++|+||++ +++.+++.|+.+|++++.. . ..+.
T Consensus 202 Vf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~----i~~~v~e~~~~el~~l~~~--~---~~l~ 272 (435)
T COG0017 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKY----LFKKVLEECADELEFLGRD--N---SELK 272 (435)
T ss_pred eEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHhhcc--c---hhhc
Confidence 99999999999999999999999999999999999999999999999 9999999999888877531 0 1122
Q ss_pred hhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCC-CceEE
Q 011197 326 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAA 404 (491)
Q Consensus 326 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~~~~ 404 (491)
.....||+||||+||+++|++.+.+. +.||+|+.+++|++|.+.+++ .|+||+|||.+++||||+.++|+ +++.+
T Consensus 273 ~~~~~pf~ritY~eAieiL~~~~~e~---~~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~ 348 (435)
T COG0017 273 RPESAPFPRITYKEAIEILEEKGFEK---VEWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVAS 348 (435)
T ss_pred ccccCCccEEEHHHHHHHHHhcCCcc---cCCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEE
Confidence 11146899999999999999877643 789999999999999988775 57999999999999999988766 79999
Q ss_pred EEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCC
Q 011197 405 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484 (491)
Q Consensus 405 fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr 484 (491)
|||++||+|||+|||||+|+++.+.+++++.|++++.|+|||++++||+|||||||||+|||+|++||..||||++||||
T Consensus 349 ~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR 428 (435)
T COG0017 349 FDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPR 428 (435)
T ss_pred EeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCC
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 011197 485 TPGSVEF 491 (491)
Q Consensus 485 ~~~~~~~ 491 (491)
+++++.+
T Consensus 429 ~~~r~~p 435 (435)
T COG0017 429 DPGRLYP 435 (435)
T ss_pred CCCCCCC
Confidence 9999864
No 3
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=9.5e-107 Score=860.81 Aligned_cols=474 Identities=50% Similarity=0.896 Sum_probs=407.4
Q ss_pred ceeeccccCCcc------c---CCCCCCcEEEEEEEEeeeecCC--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcC
Q 011197 11 KLKIVDVKGGPN------E---GLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (491)
Q Consensus 11 ~~~i~~l~~~~~------~---~~~~~~~~V~v~G~V~~~R~~g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~ 79 (491)
|+.|..++.... + ..++.|++|+|+|||+++|.+| +++|++|||++|...+|||++++...++.+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~-- 131 (586)
T PTZ00425 54 RIRICNVLNVPKSEKEFNDNSRKNKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK-- 131 (586)
T ss_pred ceeeehhccCccccccccccccccccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--
Confidence 566777765321 0 2356799999999999999987 49999999999866899999866445666777
Q ss_pred CCCCcEEEEEEEEEecCCC--------ceeEEEEE-----eeEEEEccCC-C-CCCCCccccChhhhccCccccCCChHH
Q 011197 80 ITTGASIWIQGNVVPSQGS--------KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTF 144 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~--------~~~~el~~-----~~i~ils~~~-~-~~P~~~~~~~~~~~r~~~~l~~R~~~~ 144 (491)
|+.|++|.|+|+|+.++.+ .+++||.+ .+++||+++. + .||++++.++.+++|++||||+|++.+
T Consensus 132 l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~ 211 (586)
T PTZ00425 132 CGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFI 211 (586)
T ss_pred CCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHH
Confidence 9999999999999986533 35699998 6999999983 3 499998889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcc----cc------------------cC-
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR----EA------------------AE- 201 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~----~~------------------~~- 201 (491)
+++||+||.+..++|+||.++||+||+||+|++++|||+++.|.|++...+.. .+ +.
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNA 291 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999876421100 00 00
Q ss_pred ---------CCCCCCCCCC-CCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCccccccccee
Q 011197 202 ---------SPVDAIPKTK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (491)
Q Consensus 202 ---------~~~~~~~~~~-~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE 271 (491)
+.....++.. ....+.+.+||++++||++|||||+|++++|++|||+||||||||+++|+||+|||||||
T Consensus 292 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 292 NNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred cccccccccccccccccccccccccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 0000111111 112233568999999999999999998899999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcccc
Q 011197 272 PELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 351 (491)
Q Consensus 272 ~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~ 351 (491)
+||+|+|++++|+++|++|++ +++.+++.+..++.+.+.....++.+.++..++.||++|||+||+++|++.+.++
T Consensus 372 ~E~af~d~~d~m~~~E~li~~----v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~ 447 (586)
T PTZ00425 372 PEIAFADLYDNMELAESYIKY----CIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSF 447 (586)
T ss_pred EEEecCCHHHHHHHHHHHHHH----HHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhc
Confidence 999999999999999999999 9999988888888876543344566777777788999999999999999876544
Q ss_pred ccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 352 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 352 ~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
...+.||.++..++|++|.+.++. +|+||+|||.+++||||+.++|+..+++|||++||+|||+||++|+++++.+.++
T Consensus 448 ~~~~~~G~dL~~e~Er~L~~~~~~-~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ 526 (586)
T PTZ00425 448 EVPVKWGMDLQSEHERFVAEQIFK-KPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKM 526 (586)
T ss_pred CCCCCcccccchHHHHHHHHHhcC-CcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHH
Confidence 445789999999999999986555 7999999999999999988877788999999999999999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 432 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 432 ~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
+++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.|
T Consensus 527 ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 527 IKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred HHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999976
No 4
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.7e-106 Score=860.86 Aligned_cols=475 Identities=56% Similarity=0.954 Sum_probs=409.4
Q ss_pred CcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCC--eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCc
Q 011197 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gk--l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd 84 (491)
.|..+++|++++....++..+.|++|+|+|||+++|.+|| ++||+|||+++.+.||||++++.. ...+. |+.|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ES 103 (572)
T PLN02221 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VATGT 103 (572)
T ss_pred cccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCCce
Confidence 4667889999985544456789999999999999999985 899999999954469999986532 22235 99999
Q ss_pred EEEEEEEEEecCC---CceeEEEEEeeEEEEccCCC-CCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHH
Q 011197 85 SIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (491)
Q Consensus 85 ~V~V~G~v~~~~~---~~~~~el~~~~i~ils~~~~-~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (491)
+|.|+|+|+.++. ..+++||++++++|||+|.. ++|++.+.++.+++|+++|||+|++.++++||+||.+.+++|+
T Consensus 104 ~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ 183 (572)
T PLN02221 104 CVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHS 183 (572)
T ss_pred EEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 34689999999999999974 5999988889999999999999999999999999999999999
Q ss_pred HHhhCCcEEeecceeeccCCCCCCCceeeeecCCCc----------------------------------ccccCC----
Q 011197 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS----------------------------------REAAES---- 202 (491)
Q Consensus 161 ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~----------------------------------~~~~~~---- 202 (491)
||.++||+||+||+|++++|||+++.|.|++..... -|.+.+
T Consensus 184 ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (572)
T PLN02221 184 FFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263 (572)
T ss_pred HHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhh
Confidence 999999999999999999999999999997643100 000000
Q ss_pred ----------------------CC-CCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCC
Q 011197 203 ----------------------PV-DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259 (491)
Q Consensus 203 ----------------------~~-~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~ 259 (491)
.. ...+ ++.+..+.+.+||++++||+||||||||++++|++|||+||||||||+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~ 342 (572)
T PLN02221 264 ITAAVAELKIAKESLAHIEERSKLKPGLP-KKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSH 342 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccCCc-ccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCC
Confidence 00 0011 33445556779999999999999999999889999999999999999999
Q ss_pred CCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHH
Q 011197 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 339 (491)
Q Consensus 260 t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 339 (491)
|+||||||||||+||+|.|++|+|+++|+||++ +++.+.+.+.+++.++........++.++...+.||+||||.|
T Consensus 343 T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~----i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~E 418 (572)
T PLN02221 343 TSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKY----MCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTE 418 (572)
T ss_pred CCcccccccceeeeeecCCHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHH
Confidence 999999999999999999999999999999999 9999988888777665433333344556655678999999999
Q ss_pred HHHHHHHh---ccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEee
Q 011197 340 AIELLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 416 (491)
Q Consensus 340 a~~~l~~~---~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~ 416 (491)
|+++|++. |.+++..+.||.++..++|++|.+.++. +|+||+|||..++||||+.++++..++|||||++|+|||+
T Consensus 419 Ai~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~ 497 (572)
T PLN02221 419 AIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELI 497 (572)
T ss_pred HHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEEC
Confidence 99999874 4444445679999999999999886554 8999999999999999877777778899999999999999
Q ss_pred chhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 417 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 417 ~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
+|++|+++++.+++++++.|++++.|+|||+|++||+|||||||||||||+||+||.+|||||++|||++++|.+
T Consensus 498 ~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 498 GGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964
No 5
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=3.2e-106 Score=860.27 Aligned_cols=477 Identities=45% Similarity=0.826 Sum_probs=417.7
Q ss_pred CCCcccceeeccccCCcccCCCCCCcEEEEEEEEeeee------------------------------------------
Q 011197 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR------------------------------------------ 42 (491)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R------------------------------------------ 42 (491)
.++|+.|+.++.|+...++|...+|+.|.|.|||++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 46899999999999987788889999999999998743
Q ss_pred ----------------------------cCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEe
Q 011197 43 ----------------------------AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (491)
Q Consensus 43 ----------------------------~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~ 94 (491)
.+|+++||+|||++|..+||||+++....+. .. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 3348899999999997789999987643332 45 999999999999998
Q ss_pred cCC--CceeEEEEEeeEEEEccCC-CCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEee
Q 011197 95 SQG--SKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (491)
Q Consensus 95 ~~~--~~~~~el~~~~i~ils~~~-~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~ 171 (491)
++. ..+++||.|++++||+++. .+||++++.++.|++|++||||+|++.++++||+||++++++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 3678999999999999986 3599998888999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCCCCCceeeeecCCCcccc---------cCC--------------CC------------------------
Q 011197 172 SPIITASDCEGAGEQFCVTTLIPSSREA---------AES--------------PV------------------------ 204 (491)
Q Consensus 172 TPiL~~~~~eg~~~~F~vt~~~~~~~~~---------~~~--------------~~------------------------ 204 (491)
||+|++++|||+++.|.|++.....+++ +.. .+
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999998754211110 000 00
Q ss_pred ------------CCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccccccceee
Q 011197 205 ------------DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (491)
Q Consensus 205 ------------~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (491)
...+.++.++.+++.+||++++||+||||||+|++++|++|||+||||||||+++|+||||||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 00112234455678899999999999999999988899999999999999999999999999999999
Q ss_pred EeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhc-ccc
Q 011197 273 ELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKF 351 (491)
Q Consensus 273 e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~ 351 (491)
|++|.||+|+|+++|+||++ +++.+++++..++++++........+.++..+..||+||||.||+++|++.+ .++
T Consensus 419 Emaf~d~~dvM~l~E~lI~~----v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~ 494 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKF----LCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKF 494 (633)
T ss_pred eehhcCHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCc
Confidence 99999999999999999999 9999999888888877644443445556656778999999999999998763 445
Q ss_pred ccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 352 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 352 ~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
+...+||.||..++|++|++.+++ .|+||+|||.+++||||+.++|+.++++|||+++|+|||+||++|+|+++.+.++
T Consensus 495 e~~~~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~ 573 (633)
T PLN02532 495 ETKPEWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNAR 573 (633)
T ss_pred ccccccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHH
Confidence 556789999999999999987665 8999999999999999988888889999999999989999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 432 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 432 ~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 574 ~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 574 IEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred HHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 6
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=2e-105 Score=842.87 Aligned_cols=447 Identities=57% Similarity=0.956 Sum_probs=398.7
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcEEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~V~V~G 90 (491)
+|+++... ..++.|++|+|+|||+++|.+||++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 45566542 1246799999999999999999999999999993335999998763 22445666 99999999999
Q ss_pred EEEecCCCceeEEEEEeeEEEEccCC-CCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEE
Q 011197 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ils~~~-~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~E 169 (491)
++++++...+++||.+++++||++|. ..+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766678999999999999997 35999988888999999999999999999999999999999999999999999
Q ss_pred eecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEE
Q 011197 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249 (491)
Q Consensus 170 V~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI 249 (491)
|+||+|++++|||++++|.+.+.+. +.+.+||++++||++|||||||++++|++|||||
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i 216 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGI---------------------DFSQDFFGKEAYLTVSGQLYLETYALALSKVYTF 216 (453)
T ss_pred ecCCeEeecCCCCCCCceEeccccc---------------------ccchhccCCccccccCHHHHHHHHhhcccCceEe
Confidence 9999999999999999998743221 0124699999999999999999888999999999
Q ss_pred ccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhc
Q 011197 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 329 (491)
Q Consensus 250 ~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 329 (491)
|||||||+++++||||||||||||++|+|++|+|+++|+++++ +++.+.+.+..+++........++...++++++
T Consensus 217 ~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (453)
T TIGR00457 217 GPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKY----IIKAVLENCSQELKFLEKNFDKDLIKRLENIIN 292 (453)
T ss_pred eeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhccCCchHHHHHHHhcC
Confidence 9999999998899999999999999999999999999999999 999888777766666554444556677778888
Q ss_pred CCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEe
Q 011197 330 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 409 (491)
Q Consensus 330 ~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~ 409 (491)
.||+++||+||+++|++.+..++....||.+|+.++|++|++.++. +|+||||||.+++|||++.++++.+++||||++
T Consensus 293 ~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~ 371 (453)
T TIGR00457 293 NKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLA 371 (453)
T ss_pred CCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeecc
Confidence 9999999999999999887655555679999999999999987765 799999999999999987776778999999999
Q ss_pred CCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 410 PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 410 ~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+|+|||+|||+|+|+++++.+++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|
T Consensus 372 ~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~ 451 (453)
T TIGR00457 372 PGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNI 451 (453)
T ss_pred CCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011197 490 E 490 (491)
Q Consensus 490 ~ 490 (491)
.
T Consensus 452 ~ 452 (453)
T TIGR00457 452 N 452 (453)
T ss_pred C
Confidence 5
No 7
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=7e-105 Score=839.70 Aligned_cols=445 Identities=61% Similarity=1.044 Sum_probs=400.8
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~V~V 88 (491)
+++|+++... ++.|++|+|+|||+++|.+||++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4678888643 478999999999999999999999999999974 888776542 34566777 999999999
Q ss_pred EEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcE
Q 011197 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (491)
Q Consensus 89 ~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~ 168 (491)
+|++.+++++.+++||+|++++||++|...+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799998888999999999999999999999999999999999999999999
Q ss_pred EeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEE
Q 011197 169 WISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT 248 (491)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfe 248 (491)
||+||+|++++|||++++|.+.+...+ .+.+||+.++||++|||+|||++++|++||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~~---------------------~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~ 212 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDLD---------------------FSKDFFGKEAYLTVSGQLYAEAYAMALGKVYT 212 (450)
T ss_pred EecCCceeccCCCCCCCceEeeccccc---------------------ccccccCCCcccccCHHHHHHHHHhccCCeEE
Confidence 999999999999999999987432100 12379999999999999999988899999999
Q ss_pred EccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhh
Q 011197 249 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328 (491)
Q Consensus 249 I~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 328 (491)
||||||||+++|+||||||||||||++|+|++|+|+++|+||++ +++.+.+.+..++++.+.+.+.+..+.++.++
T Consensus 213 i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 288 (450)
T PRK03932 213 FGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKY----VVKYVLENCPDDLEFLNRRVDKGDIERLENFI 288 (450)
T ss_pred eeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhccccCchHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999 99988887777888877766555556666556
Q ss_pred cCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEE
Q 011197 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 408 (491)
Q Consensus 329 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~ 408 (491)
+.||+++||.||+++|++.+.+++....||.+++..+|++|.++++. .|+||+|||.+++|||++.++++.+++||||+
T Consensus 289 ~~p~~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl 367 (450)
T PRK03932 289 ESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLL 367 (450)
T ss_pred CCCceEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEE
Confidence 78999999999999999888766655689999999999999885555 79999999999999997666555899999999
Q ss_pred eCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 409 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 409 ~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+||+|||++|++|+++++++.++++++|++++.++||+++++||+|||||||||||||+|++||.+|||||++|||++++
T Consensus 368 ~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r 447 (450)
T PRK03932 368 APGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGR 447 (450)
T ss_pred cCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011197 489 VE 490 (491)
Q Consensus 489 ~~ 490 (491)
|.
T Consensus 448 ~~ 449 (450)
T PRK03932 448 AE 449 (450)
T ss_pred CC
Confidence 85
No 8
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-103 Score=771.25 Aligned_cols=428 Identities=59% Similarity=1.001 Sum_probs=405.9
Q ss_pred CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEE
Q 011197 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (491)
Q Consensus 26 ~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~ 105 (491)
...|+++.+.|||+++|..|+++|++|.||++.+++|||++++ +.+. +..|++|.|+|.+.-++.+.+++|+.
T Consensus 17 ~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 17 PRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeeeee
Confidence 5689999999999999999999999999999999999999983 2345 99999999999999987778899999
Q ss_pred EeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCC
Q 011197 106 VNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185 (491)
Q Consensus 106 ~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~ 185 (491)
|+++.+++.++++||++++.++++++|+..|||.|++..++++|+||.+..++++||++++|++|+||+||+++|||+++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccc
Q 011197 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265 (491)
Q Consensus 186 ~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~ 265 (491)
.|.||+.. |.+.+||++|+||++|.|||++.+++++.|||.+||+||+|+++++|||.
T Consensus 170 ~F~vtt~~----------------------d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLA 227 (446)
T KOG0554|consen 170 VFQVTTLT----------------------DYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLA 227 (446)
T ss_pred eEEEEecC----------------------cccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHh
Confidence 99998754 24579999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeccCC-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHH
Q 011197 266 EFWMIEPELAFAD-LKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 344 (491)
Q Consensus 266 EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 344 (491)
||||+|.|++|++ ++|+|+++|.++++ +++.++++|.+++++..++.....+.+++..+..+|.++||.||+++|
T Consensus 228 EFwMlEaE~AF~~sl~d~m~~~e~~~K~----mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L 303 (446)
T KOG0554|consen 228 EFWMLEAELAFAESLDDLMSCAEAYIKH----MIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELL 303 (446)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHH
Confidence 9999999999998 99999999999999 999999999999999888888888889988888899999999999999
Q ss_pred HHhc-cccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcc
Q 011197 345 IKAK-KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREE 423 (491)
Q Consensus 345 ~~~~-~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~ 423 (491)
++.. ..|+.+++||.+|.+++|++|++.+++ .||||+|||..++||||+.++++.++.+|||++||||||+|||+||.
T Consensus 304 ~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe 382 (446)
T KOG0554|consen 304 QKAVTKKFKTPPKWGIDLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREE 382 (446)
T ss_pred HHhcccccccCcccccccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchh
Confidence 9987 677888999999999999999998875 99999999999999999999888889999999999999999999998
Q ss_pred cHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 424 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 424 ~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
| .+++++.|.++++|+||||+++||.+|||||||||||++++++|.+||||||||||.|+.+.+
T Consensus 383 ~----~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 383 R----KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred h----HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 8 567788999999999999999999999999999999999999999999999999999999864
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=1.8e-100 Score=801.51 Aligned_cols=418 Identities=29% Similarity=0.483 Sum_probs=371.3
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (491)
.+++|... +.|++|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45566543 6789999999999999999999999999996 5999998653 23555666 9999999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcccc---ChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCC
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~---~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~ 166 (491)
|++++++...+++||.+++++|+|+|..++|++.+.. +.+...++||||+|++.++++|++||.+++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999987789876543 4556669999999999999999999999999999999999
Q ss_pred cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCc
Q 011197 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSN 245 (491)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~r 245 (491)
|+||+||+|++++|||+++.|++ +||+.++||++|||+||| ++++|++|
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v------------------------------~~~~~~~yL~~Spql~~q~li~~g~~r 201 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI------------------------------TYFEREAFLGQSPQLYKQQLMAAGFER 201 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee------------------------------EecCCcEEECcCHHHHHHHHHhcccCc
Confidence 99999999999999999999976 567899999999999997 67899999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 325 (491)
|||||||||||+++|+||||||||||||++|+|++|+|+++|+||++ ++..+.++++.++...+.. +
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~----i~~~~~~~~~~~~~~~~~~--------~- 268 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVR----VFEDVPERCAHQLETLEFK--------L- 268 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHH----HHHHHHhcchhhhhhcccc--------c-
Confidence 99999999999998889999999999999999999999999999999 9998888776555432210 0
Q ss_pred hhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccC-CCCCceEE
Q 011197 326 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAA 404 (491)
Q Consensus 326 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~ 404 (491)
.....||+|+||.||++++++.|.+ ..||.++...+|++|.+.+ . .|+||+|||++++|||++.+ +++.+++|
T Consensus 269 ~~~~~pf~rity~eA~~~l~~~g~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~ 342 (428)
T TIGR00458 269 EKPEGKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKS 342 (428)
T ss_pred ccCCCCceEEEHHHHHHHHHHcCCC----CCCccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEE
Confidence 0124689999999999999988764 4578899999999998754 3 79999999999999997554 45679999
Q ss_pred EEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCC
Q 011197 405 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484 (491)
Q Consensus 405 fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr 484 (491)
||||++|+ ||+||++|++++++++++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||
T Consensus 343 fdl~~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr 421 (428)
T TIGR00458 343 FDLMYRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPR 421 (428)
T ss_pred EEEEeCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccC
Confidence 99999995 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011197 485 TPGSVE 490 (491)
Q Consensus 485 ~~~~~~ 490 (491)
+|+++.
T Consensus 422 ~~~r~~ 427 (428)
T TIGR00458 422 DRKRLT 427 (428)
T ss_pred CCCCCC
Confidence 999985
No 10
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6e-100 Score=800.79 Aligned_cols=423 Identities=31% Similarity=0.538 Sum_probs=374.8
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~V~ 87 (491)
++++|+|+... ..|++|+|+|||+++|.+||++|++|||++| .||+|++++. ..++.++. |+.||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g--~iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSG--IIQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCc--EEEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 67899999864 6899999999999999999999999999996 4999998763 23455667 99999999
Q ss_pred EEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcc---ccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011197 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (491)
Q Consensus 88 V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~---~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (491)
|+|++.+++...+++||++++++|||+|..++|+..+ ..+.+.++++||||+|++.++++|++||.+++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987777899999999999999877887643 2356777899999999999999999999999999999999
Q ss_pred CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccC
Q 011197 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATAL 243 (491)
Q Consensus 165 ~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~ 243 (491)
+||+||+||+|++++++|+++.|++ +||+.++||++|||+||| ++++|+
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~------------------------------~~~~~~~~L~~Spql~~q~l~~~g~ 202 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI------------------------------DYFEKEAYLAQSPQLYKQMMVGAGF 202 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE------------------------------EecCCceEecCCHHHHHHHHHhcCC
Confidence 9999999999999999999999976 678999999999999997 556789
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhh
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIID 322 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (491)
+||||||||||||+++++||||||||||||++|+| ++++|+++|+||++ +++.+.++++.++.+.+..
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~----i~~~~~~~~~~~i~~~~~~------- 271 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRY----MYEDVAENCEKELELLGIE------- 271 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhccC-------
Confidence 99999999999999988899999999999999998 99999999999999 9988877766555443321
Q ss_pred hhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcccc---ccCccEEEEeCCCCCcccccccCC-C
Q 011197 323 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFYMRQND-D 398 (491)
Q Consensus 323 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~---~~~~p~~i~~~P~~~~pf~~~~~~-~ 398 (491)
+ ...+.||+++||.||++++++.|.+ ..||.+++..+|+.|.+.+ +...|+||+|||.+++|||++.++ +
T Consensus 272 -~-~~~~~~f~rit~~eA~~~l~~~~~~----~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~ 345 (437)
T PRK05159 272 -L-PVPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDD 345 (437)
T ss_pred -C-CcCCCCceEeEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCC
Confidence 1 1234689999999999999887754 4578889989998886433 121389999999999999986654 4
Q ss_pred CCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011197 399 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 478 (491)
Q Consensus 399 ~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Ird 478 (491)
+.+++|||||++|+ ||+|||+|++|+++++++++++|++++.++|||+|++||+|||||||||||||+|++||.+||||
T Consensus 346 ~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Ird 424 (437)
T PRK05159 346 PEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIRE 424 (437)
T ss_pred CCEEEEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhE
Confidence 57999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 011197 479 AIPFPRTPGSVE 490 (491)
Q Consensus 479 vi~FPr~~~~~~ 490 (491)
|++|||+|++|.
T Consensus 425 v~~FPr~~~~~~ 436 (437)
T PRK05159 425 AVLFPRDRHRLT 436 (437)
T ss_pred EeeccCCCCCCC
Confidence 999999999985
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-97 Score=790.95 Aligned_cols=431 Identities=25% Similarity=0.405 Sum_probs=366.4
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc----cchhhhhhcCCCCCcE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~~~~~L~~gd~ 85 (491)
.++.|++|... ...|++|+|+|||+++|.+|+++|++|||+++ +||+|++.+. ..++.+.. |+.||+
T Consensus 64 ~~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esi 134 (550)
T PTZ00401 64 TFIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESI 134 (550)
T ss_pred ceEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCE
Confidence 35888888754 23899999999999999999999999999996 5999997542 12334556 999999
Q ss_pred EEEEEEEEecC-----CCceeEEEEEeeEEEEccCCCCCCCCcccc-----------ChhhhccCccccCCChHHHHHHH
Q 011197 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVAR 149 (491)
Q Consensus 86 V~V~G~v~~~~-----~~~~~~el~~~~i~ils~~~~~~P~~~~~~-----------~~~~~r~~~~l~~R~~~~~~~~~ 149 (491)
|.|+|+|++.+ ...+++||++++++|||+|.+++|++.++. +.+...++||||+|++.++++|+
T Consensus 135 V~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r 214 (550)
T PTZ00401 135 VDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFR 214 (550)
T ss_pred EEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHH
Confidence 99999999743 345689999999999999987789875432 34555699999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc
Q 011197 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (491)
Q Consensus 150 ~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~ 229 (491)
+||.+++++|+||.++||+||+||+|+++++||+++.|.+ +||+.++||+
T Consensus 215 ~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v------------------------------~yf~~~~~L~ 264 (550)
T PTZ00401 215 LQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL------------------------------EYFNRFAYLA 264 (550)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc------------------------------ccCCCCeecC
Confidence 9999999999999999999999999999999999999976 6889999999
Q ss_pred cchhhHHHHH-hccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011197 230 VSGQLNAETY-ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILDNCKE 307 (491)
Q Consensus 230 ~Spql~lql~-~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~ 307 (491)
||||||||++ ++|++||||||||||||+++|+||||||||||||++|. +|+++|+++|+|+.+ ++..+.+. ..
T Consensus 265 qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~----i~~~l~~~-~~ 339 (550)
T PTZ00401 265 QSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNY----IFERLATH-TK 339 (550)
T ss_pred CCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHH----HHHHHHcc-ch
Confidence 9999999865 57899999999999999999999999999999999986 799999999999999 88877654 22
Q ss_pred cccccchhh-------c---------------------chhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccc
Q 011197 308 DMDFFNTWI-------E---------------------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGC 359 (491)
Q Consensus 308 ~l~~~~~~~-------~---------------------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~ 359 (491)
++......+ . ..+.+.+.+ .+.+|+||+|.||+++|++.+. ..+.|+.
T Consensus 340 ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~ 415 (550)
T PTZ00401 340 ELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTD 415 (550)
T ss_pred hhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCccc
Confidence 332221000 0 001122222 4567999999999999998742 2246788
Q ss_pred ccchHHhhhhc---cccccCccEEEEe-CCCCCcccccccC-CCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH
Q 011197 360 DLQSEHERYLT---EEAFGGCPVIVSD-YPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434 (491)
Q Consensus 360 ~l~~~~e~~l~---~~~~~~~p~~i~~-~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~ 434 (491)
|++...|++|. +..++ .|+||+| ||.+++|||++.+ +++.+++|||||++| +||+||++|+||+++|.+++++
T Consensus 416 dl~~~~E~~L~~~v~~~~~-~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~ 493 (550)
T PTZ00401 416 DINTTNEKLLGKLVKERYG-TDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKM 493 (550)
T ss_pred ccCchHHHHHHHHHHHhcC-CCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHH
Confidence 99999999875 33344 7999998 9999999996544 566799999999999 5999999999999999999999
Q ss_pred cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 435 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 435 ~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+|++++.++|||+|++||+|||||||||||||+|++||..|||+|++|||+|+|+.
T Consensus 494 ~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 494 LNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred cCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999984
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=4.9e-97 Score=788.53 Aligned_cols=427 Identities=27% Similarity=0.449 Sum_probs=366.3
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-----chhhhhhcCCCCCc
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGA 84 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-----~~~~~~~~~L~~gd 84 (491)
+++.|++|... +.|++|+|+|||+++|.+|+++|++|||+++ +||+|+..+.. .++.+.. |+.||
T Consensus 68 ~~~~i~~l~~~------~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es 137 (530)
T PLN02850 68 EWTDVSDLGEE------LAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRES 137 (530)
T ss_pred eEeEhhhcchh------hCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCC
Confidence 45788888654 7899999999999999999999999999985 59999976532 1233556 99999
Q ss_pred EEEEEEEEEecC----CCceeEEEEEeeEEEEccCCCCCCCCccc--------------------cChhhhccCccccCC
Q 011197 85 SIWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPR 140 (491)
Q Consensus 85 ~V~V~G~v~~~~----~~~~~~el~~~~i~ils~~~~~~P~~~~~--------------------~~~~~~r~~~~l~~R 140 (491)
+|.|+|+|++.+ +.++++||++++++|+|+|.+++|++.++ .+.+...++||||+|
T Consensus 138 ~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 138 VVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999999642 23458999999999999998779987543 123455599999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 141 ~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
++.++++|++||.+++++|+||.++||+||+||+|+++++||++++|.+ +
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------~ 267 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------D 267 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee------------------------------c
Confidence 9999999999999999999999999999999999999999999999976 6
Q ss_pred ccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQV 298 (491)
Q Consensus 221 ~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~ 298 (491)
||++++||+|||||||| ++++|++||||||||||||+++|+|||||||||||||+|. +|+|+|+++|+|+++ ++
T Consensus 268 yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~----i~ 343 (530)
T PLN02850 268 YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVA----IF 343 (530)
T ss_pred cCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHH----HH
Confidence 88999999999999998 5678999999999999999999999999999999999998 599999999999999 99
Q ss_pred HHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcc---cccc
Q 011197 299 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 375 (491)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~---~~~~ 375 (491)
..+.+.+..++..+....+. +.+ ++++ +++++||+||+++|++.|.+. .++.|++.++|+.|.. ..++
T Consensus 344 ~~l~~~~~~el~~i~~~~~~---~~~-~~~~-~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~ 414 (530)
T PLN02850 344 DGLNERCKKELEAIREQYPF---EPL-KYLP-KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYG 414 (530)
T ss_pred HHHHhhhhhhHHhhcccCCc---chh-hhcC-CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcC
Confidence 88887776665544321110 111 1223 678999999999999988653 3466888999988753 1233
Q ss_pred CccEEEEeCCCCCcccccccC-CCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCC
Q 011197 376 GCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 454 (491)
Q Consensus 376 ~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~p 454 (491)
..++||+|||..++|||++.+ +|+.+++|||||++| +||+||++|+||++.+.++++++|++++.++|||+|++||+|
T Consensus 415 ~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~p 493 (530)
T PLN02850 415 TDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAP 493 (530)
T ss_pred CCeEEEECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCC
Confidence 246788999999999986554 566799999999999 599999999999999999999999999999999999999999
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
||||||||||||+||+||.+|||||++|||+|+||.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecCCCCCCCC
Confidence 999999999999999999999999999999999984
No 13
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=2.1e-94 Score=768.73 Aligned_cols=438 Identities=20% Similarity=0.273 Sum_probs=374.6
Q ss_pred CCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-----chhhhh-
Q 011197 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVK- 76 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-----~~~~~~- 76 (491)
.+|.++++|+++...|.+ +++..+++|+|+|||+++|.+||++|++|||++| .||||++.+.. .|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~~~~ 159 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEKLHS 159 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHHHHh
Confidence 357889999999887742 5556789999999999999999999999999996 59999986532 255543
Q ss_pred hcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHH
Q 011197 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (491)
Q Consensus 77 ~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs 152 (491)
. |+.||+|.|+|++.+++++ ++||.+++++||++|. .|++.+.++ .+...++||||++ ++..+++|++||
T Consensus 160 ~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs 233 (553)
T PLN02502 160 L--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRA 233 (553)
T ss_pred C--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHH
Confidence 5 9999999999999999865 8999999999999997 556655444 3444489999995 889999999999
Q ss_pred HHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccch
Q 011197 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (491)
Q Consensus 153 ~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Sp 232 (491)
+|++++|+||.++||+||+||+|+++++++++++|. |++ +||+.++||++||
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~Sp 285 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THH---------------------------NDLNMDLYLRIAT 285 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eec---------------------------ccCCcceeeecCH
Confidence 999999999999999999999999988776778995 332 5689999999999
Q ss_pred hhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----
Q 011197 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK----- 306 (491)
Q Consensus 233 ql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~----- 306 (491)
||||| |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++ ++..+.+.++
T Consensus 286 el~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~----i~~~v~~~~~~~~~~ 360 (553)
T PLN02502 286 ELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSG----MVKELTGSYKIKYHG 360 (553)
T ss_pred HHHHHHHHHhccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHH----HHHHHhcccccccCC
Confidence 99995 7899999999999999999996 59999999999999999999999999999999 9988876543
Q ss_pred ccccccchhhcchhhhhhhhhhcCCCcc-ccHHHHHHHHH----HhccccccccccccccchHHhhhhccccccCccEEE
Q 011197 307 EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 381 (491)
Q Consensus 307 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~-it~~ea~~~l~----~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i 381 (491)
.++++..+|.+.++.+.++++.|.+++. ++++++.+.|+ +.++++.....||..++..++.++.+.+ . +|+||
T Consensus 361 ~~i~~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV 438 (553)
T PLN02502 361 IEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFV 438 (553)
T ss_pred ccccCCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEE
Confidence 3566667888889999999999988887 88888876554 4455544555688888899999888755 4 79999
Q ss_pred EeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc----CC--Ccc-c-HHHHHHHHhcCC
Q 011197 382 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL----KL--NRD-S-YWWYLDLRHYGS 453 (491)
Q Consensus 382 ~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~----g~--~~~-~-~~~yl~~~~~G~ 453 (491)
+|||..++|||+..++++++++|||||++|+ ||+|||++++|+.+|++++.++ +. +.+ . .++||+|++|||
T Consensus 439 ~dyP~~~splak~~~~~p~~~erFELfi~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGm 517 (553)
T PLN02502 439 LDHPVEMSPLAKPHRSKPGLTERFELFINGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGL 517 (553)
T ss_pred ECCccccCcccccCCCCCCeEEEEEEEeCCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCC
Confidence 9999999999987777888999999999998 9999999999999888877542 22 211 1 377999999999
Q ss_pred CCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 454 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||||||||||||+|+|||..|||||++||+...
T Consensus 518 PP~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k~ 551 (553)
T PLN02502 518 PPTGGWGLGIDRLVMLLTDSASIRDVIAFPAMKP 551 (553)
T ss_pred CCCceEEehHHHHHHHHcCCcchheeecCCcCCC
Confidence 9999999999999999999999999999998653
No 14
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=2e-94 Score=765.69 Aligned_cols=427 Identities=20% Similarity=0.311 Sum_probs=352.1
Q ss_pred CCcccceeeccccCCccc---C-CCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhhhc
Q 011197 6 GEFRKKLKIVDVKGGPNE---G-LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSG 78 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~-~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~~~ 78 (491)
.+|.++++++++...|.+ + ....+++|+|+|||+++|.+||++|++|+|++| +||+|++++.. .++..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~~~- 102 (496)
T TIGR00499 26 NKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFDEY- 102 (496)
T ss_pred CCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHHHh-
Confidence 367888999999877742 1 134588999999999999999999999999996 59999987542 2333331
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccCh---hhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~---~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
.|+.||+|.|+|++.+++++ ++||.|++++|||+|. .|+|.+.++. +...++||||+| ++.++++|++||+|
T Consensus 103 ~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i 178 (496)
T TIGR00499 103 LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKI 178 (496)
T ss_pred cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 28999999999999998864 8999999999999997 4555554433 555589999999 57999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||++||||
T Consensus 179 ~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~---------------------------~~~~~~~yLriSpEL 230 (496)
T TIGR00499 179 IKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HH---------------------------NALDMDLYLRIAPEL 230 (496)
T ss_pred HHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ec---------------------------ccCCCceEEecCHHH
Confidence 99999999999999999999999887777799964 32 357899999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFN 313 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~ 313 (491)
||+ |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++ ++..+.+++...+.-
T Consensus 231 ylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~----i~~~l~~~~~~~~~~-- 303 (496)
T TIGR00499 231 YLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKF----LAQELLGTTKITYGE-- 303 (496)
T ss_pred HHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHH----HHHHHhcccceecCc--
Confidence 995 8899999999999999999995 69999999999999999999999999999999 998887655432110
Q ss_pred hhhcchhhhhhhhhhcCCCccccHHHHHHHHHH-hccc--------------------c-ccccccccccchHHhhhhcc
Q 011197 314 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-AKKK--------------------F-EFLVKWGCDLQSEHERYLTE 371 (491)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~~~~--------------------~-~~~~~~g~~l~~~~e~~l~~ 371 (491)
....++.||+|+||.||++++.+ .|++ + .....||..+...++.++.+
T Consensus 304 ----------~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~ 373 (496)
T TIGR00499 304 ----------LEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEH 373 (496)
T ss_pred ----------eeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 00123457788888888776642 2322 1 11223455667778887765
Q ss_pred ccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHH------HcCCCcccH--H
Q 011197 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--W 443 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~------~~g~~~~~~--~ 443 (491)
.+ . +|+||+|||.+++||++..++++.+++|||||++|+ ||+|||+|++|+.+|++++. +.|.+++.+ +
T Consensus 374 ~l-~-~P~fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de 450 (496)
T TIGR00499 374 TL-I-QPTFITHYPAEISPLAKRNPSNPEFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDE 450 (496)
T ss_pred cc-C-CCEEEECCchhcCcccccCCCCCCeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchH
Confidence 44 4 799999999999999876556667999999999997 99999999999999998865 457776654 8
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 444 ~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||+|++||||||||||||||||+|++||.+|||||++||+.+.
T Consensus 451 ~yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 451 DFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred HHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 99999999999999999999999999999999999999999875
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-94 Score=761.24 Aligned_cols=429 Identities=21% Similarity=0.319 Sum_probs=348.9
Q ss_pred CCcccceeeccccCCccc---C-CCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhc
Q 011197 6 GEFRKKLKIVDVKGGPNE---G-LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~-~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~ 78 (491)
.+|.++++|+++...|.+ + ....+++|+|+|||+++|.+||++|++|||++| +||||++++. ..|+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~- 103 (491)
T PRK00484 27 NKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAFKK- 103 (491)
T ss_pred CCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHHhc-
Confidence 467888999999877643 1 112347899999999999999999999999996 5999998763 23556666
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcccc-ChhhhccCccccCC-ChHHHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV-SREFLRTKAHLRPR-TNTFGAVARVRNALAY 156 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~-~~~~~r~~~~l~~R-~~~~~~~~~~Rs~i~~ 156 (491)
|+.||+|.|+|++.+++++ ++||.|++++|||+|..++|...... +.+...++||||+| ++.++++|++||++++
T Consensus 104 -l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~ 180 (491)
T PRK00484 104 -LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIIS 180 (491)
T ss_pred -CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCCCCCcccccccchhhhccceeeehhcCHHHHHHHHHHHHHHH
Confidence 9999999999999998864 89999999999999974444432222 23444489999997 7899999999999999
Q ss_pred HHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHH
Q 011197 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA 236 (491)
Q Consensus 157 ~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~l 236 (491)
++|+||.++||+||+||+|+++++++++++|.+ +. +||+.++||++||||||
T Consensus 181 ~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t-~~---------------------------~~~~~~~yL~~Spql~l 232 (491)
T PRK00484 181 AIRRFLDNRGFLEVETPMLQPIAGGAAARPFIT-HH---------------------------NALDIDLYLRIAPELYL 232 (491)
T ss_pred HHHHHHHHCCCEEEECCceeccCCCccceeeee-cc---------------------------ccCCCceEeccCHHHHH
Confidence 999999999999999999998877777799953 22 67899999999999999
Q ss_pred H-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchh
Q 011197 237 E-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTW 315 (491)
Q Consensus 237 q-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~ 315 (491)
| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||++ +++.+.++. .+.+.+..
T Consensus 233 k~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~----i~~~~~~~~--~i~~~~~~ 305 (491)
T PRK00484 233 KRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRH----LAQAVLGTT--KVTYQGTE 305 (491)
T ss_pred HHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHH----HHHHHhCCc--eEecCCEe
Confidence 6 7889999999999999999996 69999999999999999999999999999999 988887542 23322110
Q ss_pred hcchhhhhhhhhhcCCCccccHHHHHHHHHH-----------------hccccccccccccccchHHhhhhccccccCcc
Q 011197 316 IEKGIIDRLSTVAERDFVQLSYTDAIELLIK-----------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 378 (491)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-----------------~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p 378 (491)
..++.||+++||.||++.+.. .+++......+|..++..++.++.+ .+. +|
T Consensus 306 ----------~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~-~~~-~P 373 (491)
T PRK00484 306 ----------IDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEP-KLI-QP 373 (491)
T ss_pred ----------ecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh-hcC-Cc
Confidence 013458888888888876532 1221111112344455556666444 444 89
Q ss_pred EEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCcc-cH-HHHHHHHh
Q 011197 379 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRD-SY-WWYLDLRH 450 (491)
Q Consensus 379 ~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~-~~-~~yl~~~~ 450 (491)
+||+|||.+++|||+..++++.+++|||||++|+ ||+|||+|++|+.+|++++++ .|.++. .+ +|||+|++
T Consensus 374 ~Fi~dyP~~~~pf~k~~~~~~~~~~rFdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~ 452 (491)
T PRK00484 374 TFITDYPVEISPLAKRHREDPGLTERFELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALE 452 (491)
T ss_pred EEEECCChHHhhhhccCCCCCCeEEEEEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 9999999999999987767778999999999998 999999999999999998864 244333 23 79999999
Q ss_pred cCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 451 ~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
||+|||||||||||||+|++||.+|||||++||+.+..
T Consensus 453 ~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~~ 490 (491)
T PRK00484 453 YGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRPE 490 (491)
T ss_pred CCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCCC
Confidence 99999999999999999999999999999999998753
No 16
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-93 Score=759.02 Aligned_cols=425 Identities=20% Similarity=0.315 Sum_probs=345.1
Q ss_pred CCcccceeeccccCCccc--CC--CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchh-hhhh
Q 011197 6 GEFRKKLKIVDVKGGPNE--GL--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~--~~--~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~-~~~~ 77 (491)
.+|..+++++++...|++ +. ...+++|+|+|||+++|.+||++|++|+|++| +||||++++. ..|. .++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~~~~ 115 (505)
T PRK12445 38 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 115 (505)
T ss_pred CCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHHHhc
Confidence 367889999999877742 11 24478899999999999999999999999986 5999998653 2343 3456
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHH
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~ 153 (491)
|+.||+|+|+|++.+++++ ++||.|++++|||+|. .|+|.+.++ .+...++||||+| ++..+++|++||+
T Consensus 116 --l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~ 189 (505)
T PRK12445 116 --WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 189 (505)
T ss_pred --CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998864 8999999999999997 455554433 3444489999998 5899999999999
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchh
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spq 233 (491)
|++++|+||.++||+||+||+|++..+++++.+|. |++ ++|+.++||++|||
T Consensus 190 i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~-t~~---------------------------~~~~~~~yL~~SpE 241 (505)
T PRK12445 190 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFI-THH---------------------------NALDLDMYLRIAPE 241 (505)
T ss_pred HHHHHHHHHHHCCCEEeeCCeeEecCCCCccccee-ccc---------------------------ccCCcceeeecCHH
Confidence 99999999999999999999999876666667884 433 56789999999999
Q ss_pred hHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 011197 234 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFF 312 (491)
Q Consensus 234 l~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~ 312 (491)
|||+ |+++|++||||||||||||++ |.||||||||||||++|+||+|+|+++|+||++ +++.+.+.+.... .
T Consensus 242 LylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~----l~~~~~~~~~~~~--~ 314 (505)
T PRK12445 242 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRT----LAQEVLGTTKVTY--G 314 (505)
T ss_pred HHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHH----HHHHHhcccceec--C
Confidence 9995 889999999999999999999 899999999999999999999999999999999 8888776443211 0
Q ss_pred chhhcchhhhhhhhhhcCCCccccHHHHHHHHH-------------------Hhcccccccccccc-ccchHHhhhhccc
Q 011197 313 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI-------------------KAKKKFEFLVKWGC-DLQSEHERYLTEE 372 (491)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~-------------------~~~~~~~~~~~~g~-~l~~~~e~~l~~~ 372 (491)
... -.+..||+|+||.||++.+. +.+++.. ..|+. .+-..+...++++
T Consensus 315 ~~~----------i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~ 382 (505)
T PRK12445 315 EHV----------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEA 382 (505)
T ss_pred cee----------ccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHh
Confidence 000 01234666777777766553 2233221 12221 1333344445555
Q ss_pred cccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc------CCCcccH--HH
Q 011197 373 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WW 444 (491)
Q Consensus 373 ~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~------g~~~~~~--~~ 444 (491)
.+. +|+||+|||.+++|||+..++++.+++|||||++|+ ||+||++|++|+++|+++++++ |.+++.. +|
T Consensus 383 ~l~-~P~Fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~ 460 (505)
T PRK12445 383 HLI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDED 460 (505)
T ss_pred hcC-CCEEEECCCchhCcccccCCCCCCceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHH
Confidence 555 899999999999999987667778999999999997 9999999999999999998743 6655543 89
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 445 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 445 yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||+|++||+|||||||||||||+|++||..|||||++||+.+.
T Consensus 461 yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 461 YVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HHHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 9999999999999999999999999999999999999999875
No 17
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1e-92 Score=757.98 Aligned_cols=440 Identities=16% Similarity=0.251 Sum_probs=371.0
Q ss_pred CCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-----cchhh-h
Q 011197 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQ-V 75 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-----~~~~~-~ 75 (491)
.+|.++++++++...|.+ ++...++.|+|+|||+++|.+| |++|++|+|.+| +||||++++. ..|+. .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~~~~ 183 (585)
T PTZ00417 106 HKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFAECY 183 (585)
T ss_pred CCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHHHHH
Confidence 357888999999877752 2223456799999999999998 799999999886 5999998652 23444 3
Q ss_pred hhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 76 ~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
+. |+.||+|+|+|.+.+++++ ++||.++++++|++|..++|..-...+.+...++||||+| ++..+++|++||+|
T Consensus 184 ~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~I 259 (585)
T PTZ00417 184 DK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKI 259 (585)
T ss_pred hc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHHH
Confidence 55 9999999999999988754 8999999999999998666654111233444489999998 78999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++.+++++++|. |++ ++++.++||++||||
T Consensus 260 i~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~---------------------------n~~d~~lYLriSpEL 311 (585)
T PTZ00417 260 INYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THH---------------------------NDLDLDLYLRIATEL 311 (585)
T ss_pred HHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-ecc---------------------------cCCCcceEEeecHHH
Confidence 9999999999999999999999987666678995 443 346889999999999
Q ss_pred HH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------
Q 011197 235 NA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK------- 306 (491)
Q Consensus 235 ~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~------- 306 (491)
|| +|+++|++||||||||||||+++ +||||||||||||++|+||+|+|+++|+||++ ++..+.+...
T Consensus 312 ~lKrLlvgG~~rVfeIgp~FRnE~~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~----v~~~v~g~~~~~~~~~g 386 (585)
T PTZ00417 312 PLKMLIVGGIDKVYEIGKVFRNEGID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQ----LVMHLFGTYKILYNKDG 386 (585)
T ss_pred HHHHHHHhCCCCEEEEcccccCCCCC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHH----HHHHhcCcceeeecccc
Confidence 99 58899999999999999999995 79999999999999999999999999999999 8888765421
Q ss_pred -----ccccccchhhcchhhhhhhhhhcCCCcc-----ccHHHHHHHHHHhccccccccccccccchHHhhhhccccccC
Q 011197 307 -----EDMDFFNTWIEKGIIDRLSTVAERDFVQ-----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGG 376 (491)
Q Consensus 307 -----~~l~~~~~~~~~~~~~~l~~~~~~~~~~-----it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~ 376 (491)
.++++..+|.+.++.+++++++|.++.. .+++++.+++++.|+++.....||..++..++.++.+.+..
T Consensus 387 ~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~- 465 (585)
T PTZ00417 387 PEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN- 465 (585)
T ss_pred cccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-
Confidence 2455666788888899999998877642 58999999999988876655567778888888888876653
Q ss_pred ccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCcccH---HHHHH
Q 011197 377 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY---WWYLD 447 (491)
Q Consensus 377 ~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~~~---~~yl~ 447 (491)
+|+||+|||.+++|||+...+++++++|||||++|+ ||+||+++++|+.+|++++.+ .| +++.+ ++||+
T Consensus 466 ~PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~ 543 (585)
T PTZ00417 466 KPFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCT 543 (585)
T ss_pred CcEEEECCChhhCchhhhcCCCCCeEEeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHH
Confidence 699999999999999986666778999999999997 999999999999999886643 45 43433 44999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 448 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 448 ~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|++||||||||||||||||+|++||.+|||||++||+.+.
T Consensus 544 AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 544 SLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 9999999999999999999999999999999999999875
No 18
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.5e-92 Score=752.35 Aligned_cols=443 Identities=16% Similarity=0.225 Sum_probs=359.8
Q ss_pred CCCCCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc----chhhh
Q 011197 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV 75 (491)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~----~~~~~ 75 (491)
.++.+|..+++++++...|.+ ++...++.|+|+|||+++|.+||++|++|||++| .||||++++.. .+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~ 155 (659)
T PTZ00385 78 AAYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKL 155 (659)
T ss_pred CccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHH
Confidence 367899999999999888753 2223356799999999999999999999999996 59999987542 24443
Q ss_pred -hhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCC-CCCC-C--ccc---cChhhhccCccccCC-ChHHHH
Q 011197 76 -KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGA 146 (491)
Q Consensus 76 -~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~-~~P~-~--~~~---~~~~~~r~~~~l~~R-~~~~~~ 146 (491)
+. |+.||+|.|+|++.++++ +++||+|++++|||++.. ..|+ + .+. .+.+...++||||+| ++.+++
T Consensus 156 ~~~--l~~gdiV~V~G~v~~t~~--GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ 231 (659)
T PTZ00385 156 KVS--LRVGDIIGADGVPCRMQR--GELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIE 231 (659)
T ss_pred HhC--CCCCCEEEEEEEEEecCC--ceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHH
Confidence 35 999999999999999875 489999999999999642 2221 2 122 245666699999996 778999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (491)
+|++||+|++++|+||.++||+||+||+|+++++++++++|. +++ ++++.++
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~-t~~---------------------------n~~~~~~ 283 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFV-THH---------------------------NANAMDL 283 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceE-eec---------------------------ccCCCCE
Confidence 999999999999999999999999999999999999999995 443 4568899
Q ss_pred ccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011197 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305 (491)
Q Consensus 227 ~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~ 305 (491)
||+|||||||| |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++ ++..+.+..
T Consensus 284 yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~----~~~~v~g~~ 358 (659)
T PTZ00385 284 FLRVAPELHLKQCIVGGMERIYEIGKVFRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQ----LAMRVNGTT 358 (659)
T ss_pred EecCChHHHHHHHhhcccCCEEEEeceecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHH----HHHHhcCCe
Confidence 99999999995 8889999999999999999995 89999999999999999999999999999999 888876532
Q ss_pred cc------------cccccchhhcchhhhhhhhhhcCCCcc---c-cHHHH---HHHHHHhccccccccccccccchHHh
Q 011197 306 KE------------DMDFFNTWIEKGIIDRLSTVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHE 366 (491)
Q Consensus 306 ~~------------~l~~~~~~~~~~~~~~l~~~~~~~~~~---i-t~~ea---~~~l~~~~~~~~~~~~~g~~l~~~~e 366 (491)
.- ++++..+|.+.++.+.+.+++|.++.. + +.+++ ..++++.|++++.....|..++..++
T Consensus 359 ~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe 438 (659)
T PTZ00385 359 VVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLID 438 (659)
T ss_pred eEEeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHH
Confidence 11 233334555666666666666655532 2 22222 23444555544433334556666777
Q ss_pred hhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHH-----HcCCCccc
Q 011197 367 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDS 441 (491)
Q Consensus 367 ~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~-----~~g~~~~~ 441 (491)
.++.+.+ . +|+||+|||.+++||++...+++.+++|||||++|+ ||+||++|++|+.+|++++. +.+.+++.
T Consensus 439 ~~ve~~l-~-qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea 515 (659)
T PTZ00385 439 FFITDRV-V-EPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEA 515 (659)
T ss_pred HHHHHhh-C-CcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchh
Confidence 7776654 3 899999999999999986666778999999999997 99999999999999999993 34555555
Q ss_pred H---HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 442 Y---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 442 ~---~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
+ +|||+|++||||||||||||||||+|++||.+|||||++||....
T Consensus 516 ~~~DedfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 516 MPLDETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred hccHHHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCccccc
Confidence 5 889999999999999999999999999999999999999998764
No 19
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-92 Score=722.03 Aligned_cols=438 Identities=21% Similarity=0.320 Sum_probs=380.6
Q ss_pred CCcccceeeccccCCccc----CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhh-hhh
Q 011197 6 GEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-VKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~----~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~-~~~ 77 (491)
..|.+++++.++...|.+ ........|+++|||.++|.+||++|++|.|++| +||++++++. ..|+. .+.
T Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~~~~ 111 (502)
T COG1190 34 NDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEALFKK 111 (502)
T ss_pred CcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHHHhc
Confidence 567888899999887753 1122233599999999999999999999999996 5999999874 34554 445
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhh--hc-cCccccCCC-hHHHHHHHHHHH
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF--LR-TKAHLRPRT-NTFGAVARVRNA 153 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~--~r-~~~~l~~R~-~~~~~~~~~Rs~ 153 (491)
++.||+|+|+|.+.+|+++ +++|.|+++++|+||+ .|+|+|.+++.. .| +.||+|+-. +..+..|..||+
T Consensus 112 --~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ 185 (502)
T COG1190 112 --LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSK 185 (502)
T ss_pred --cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999876 8999999999999998 677788776632 33 789999876 478999999999
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchh
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spq 233 (491)
|+++||+||.++||+||+||+|+..+++++|.|| +|++|. ++.++||++|||
T Consensus 186 ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNa---------------------------ld~dlyLRIApE 237 (502)
T COG1190 186 IIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNA---------------------------LDMDLYLRIAPE 237 (502)
T ss_pred HHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecc---------------------------cCCceEEeeccH
Confidence 9999999999999999999999999999999999 577753 478899999999
Q ss_pred hHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cc
Q 011197 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC-----KE 307 (491)
Q Consensus 234 l~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~-----~~ 307 (491)
||| +|+++|++||||||++||||+. +.||||||||||+|+||+||+|+|+++|+||+. +++.+.+.. ..
T Consensus 238 LyLKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~----~a~~v~gt~~v~y~~~ 312 (502)
T COG1190 238 LYLKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKE----LAKEVNGTTKVTYGGQ 312 (502)
T ss_pred HHHHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHH----HHHHhcCCeEEEECCE
Confidence 999 7999999999999999999999 689999999999999999999999999999999 999998643 35
Q ss_pred cccccchhhcchhhhhhhhhhcCC-CccccHHHHHHHHHHhccccccccc--cccccchHHhhhhccccccCccEEEEeC
Q 011197 308 DMDFFNTWIEKGIIDRLSTVAERD-FVQLSYTDAIELLIKAKKKFEFLVK--WGCDLQSEHERYLTEEAFGGCPVIVSDY 384 (491)
Q Consensus 308 ~l~~~~~~~~~~~~~~l~~~~~~~-~~~it~~ea~~~l~~~~~~~~~~~~--~g~~l~~~~e~~l~~~~~~~~p~~i~~~ 384 (491)
.+++.++|.+..|.+.++++++.. +...+.++|.+++++++++...... +|.-++..+|..+.++.. +|+||+||
T Consensus 313 ~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~li--qPTFv~d~ 390 (502)
T COG1190 313 EIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLI--QPTFVTDH 390 (502)
T ss_pred eEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhc--CCceeecC
Confidence 688888999999999999999984 5667889999999999876543322 456777888887666554 79999999
Q ss_pred CCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCccc-H-HHHHHHHhcCCCCc
Q 011197 385 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPH 456 (491)
Q Consensus 385 P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~~-~-~~yl~~~~~G~pp~ 456 (491)
|.+++||+++.++++++++|||||++|. |||||+.+.+|+..|.+||.+ .|.+++. + +.|++|++|||||+
T Consensus 391 P~eiSPLak~~~~~p~~teRFElfi~g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPT 469 (502)
T COG1190 391 PVEISPLAKRHRSNPGLTERFELFIGGK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPT 469 (502)
T ss_pred ccccCccccCCCCCcchhhhheeeeccE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCC
Confidence 9999999998888889999999999997 999999999999999999865 3555443 2 77999999999999
Q ss_pred cceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 457 AGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 457 ~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||+|||||||+|+|||+.|||||++||-...
T Consensus 470 gG~GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 470 GGLGIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred CCccccHHHHHHHHcCCCchhheecccccCC
Confidence 9999999999999999999999999997653
No 20
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=1.2e-88 Score=726.37 Aligned_cols=428 Identities=23% Similarity=0.345 Sum_probs=334.8
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
++++|.++... +.|++|+|+|||+++|.+|+++|++|||++| .||||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSG--IVQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCc--cEEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 57889999764 6899999999999999999999999999997 499999876545666777 9999999999
Q ss_pred EEEEecC-------CCceeEEEEEeeEEEEccCCCCCCCCcc-ccChhhhc-cCccccCCChHHHHHHHHHHHHHHHHHH
Q 011197 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (491)
Q Consensus 90 G~v~~~~-------~~~~~~el~~~~i~ils~~~~~~P~~~~-~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (491)
|+|.+++ ..++++||.+++++|||+|. .+|++.. ....+.+| ++||||+|++.++++|++||++++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999764 34578999999999999996 4777653 33445555 8999999999999999999999999999
Q ss_pred HHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc-ccccchhhHHH-H
Q 011197 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLNAE-T 238 (491)
Q Consensus 161 ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~L~~Spql~lq-l 238 (491)
||.++||+||+||+|+++++||+++ |.+.. .+++..+ +|+||||+||| |
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~----------------------------~~~~~~~y~L~qSpQlykq~l 201 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVPS----------------------------RVHKGEFYALPQSPQLFKQLL 201 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeeee----------------------------ecCCCceeecCCCHHHHHHHH
Confidence 9999999999999999999999876 43321 1112223 49999999997 7
Q ss_pred HhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcc
Q 011197 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEK 318 (491)
Q Consensus 239 ~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 318 (491)
|++|++||||||||||||+++++|| |||||||||++|+|++|+|+++|+||++ +++.+.+. ++..+|.+.
T Consensus 202 ~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~----v~~~v~~~-----~~~~pf~r~ 271 (583)
T TIGR00459 202 MVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSH----VFLEVKGI-----DLKKPFPVM 271 (583)
T ss_pred HhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHH----HHHHHhCC-----CCCCCceEE
Confidence 8899999999999999999988877 9999999999999999999999999999 88877542 222333333
Q ss_pred hhhhhhhhhhcC---------------------------------------------CCccccHHHHHHHHHHhccc---
Q 011197 319 GIIDRLSTVAER---------------------------------------------DFVQLSYTDAIELLIKAKKK--- 350 (491)
Q Consensus 319 ~~~~~l~~~~~~---------------------------------------------~~~~it~~ea~~~l~~~~~~--- 350 (491)
++.+++.++-+. ++.+-..++..++.++.|.+
T Consensus 272 ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 351 (583)
T TIGR00459 272 TYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLA 351 (583)
T ss_pred EHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcce
Confidence 444443332110 11122233333444443322
Q ss_pred ---cccccccc---cccch-------------------------------------HH-h-hhhccccccCccEEEEeCC
Q 011197 351 ---FEFLVKWG---CDLQS-------------------------------------EH-E-RYLTEEAFGGCPVIVSDYP 385 (491)
Q Consensus 351 ---~~~~~~~g---~~l~~-------------------------------------~~-e-~~l~~~~~~~~p~~i~~~P 385 (491)
++..-..+ .-+.. .. + .-+++.-. -+|+||+|||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfP 430 (583)
T TIGR00459 352 YLKVNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFP 430 (583)
T ss_pred EEEEcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCC
Confidence 11100000 00000 00 0 00222111 2799999999
Q ss_pred CC-----------CcccccccCCCCC---------ceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCccc----
Q 011197 386 KE-----------IKAFYMRQNDDGR---------TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS---- 441 (491)
Q Consensus 386 ~~-----------~~pf~~~~~~~~~---------~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~---- 441 (491)
.. ++||+++..+|.. .+++|||++||+ ||+|||.|+||++.|+++|+..|+++++
T Consensus 431 lfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~ 509 (583)
T TIGR00459 431 MFEKDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREK 509 (583)
T ss_pred CccccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 97 9999998665544 689999999998 9999999999999999999999987664
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 442 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 442 ~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+++||+|++||+|||||+|||||||+|+|||.+||||||+||++.+..
T Consensus 510 f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 510 FGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAAA 557 (583)
T ss_pred HHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCCCc
Confidence 799999999999999999999999999999999999999999998754
No 21
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-87 Score=690.36 Aligned_cols=411 Identities=24% Similarity=0.405 Sum_probs=335.1
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCC-c-cchhhhhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~-~-~~~~~~~~~~L~~gd~V~ 87 (491)
+++.|.+|... ++|++|+++|||++.|++|+++||||||.+|. +|||++++ . +.|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 57999999875 89999999999999999999999999999986 99999984 2 35777777 99999999
Q ss_pred EEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccc--cChhhhc-cCccccCCChHHHHHHHHHHHHHHH
Q 011197 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (491)
Q Consensus 88 V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~--~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~ 157 (491)
|+|+|.+++. .+|++||++++++|||+|.+ +|++..+ ...+.+| +|||||||++.++..+++|++++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999998865 35799999999999999975 5655432 3444455 9999999999999999999999999
Q ss_pred HHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH
Q 011197 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (491)
Q Consensus 158 iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq 237 (491)
+|+||.++||+||+||+|+.|++||+.+....++.+ + ++||. |.||||+|||
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~------------------~------G~FYA----LPQSPQlfKQ 202 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARDFLVPSRVH------------------P------GKFYA----LPQSPQLFKQ 202 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccccccccccC------------------C------Cceee----cCCCHHHHHH
Confidence 999999999999999999999999999987544433 2 37886 6699999999
Q ss_pred -HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhh
Q 011197 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWI 316 (491)
Q Consensus 238 -l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~ 316 (491)
||++|++|+|||++|||+|+.+.+|+ |||||||+||+|.+-+|+|+++|+|+++ +++.+.+.
T Consensus 203 LLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~----vf~~~~~i------------ 265 (585)
T COG0173 203 LLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRY----VFKEVKGI------------ 265 (585)
T ss_pred HHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHH----HHHHhcCC------------
Confidence 78999999999999999999999999 9999999999999999999999999999 88876432
Q ss_pred cchhhhhhhhhhcCCCccccHHHHHHHHH---------------------------------------------------
Q 011197 317 EKGIIDRLSTVAERDFVQLSYTDAIELLI--------------------------------------------------- 345 (491)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~it~~ea~~~l~--------------------------------------------------- 345 (491)
.+..||+||||+||++.+-
T Consensus 266 ----------~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk 335 (585)
T COG0173 266 ----------ELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRK 335 (585)
T ss_pred ----------ccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHH
Confidence 1233566666666654221
Q ss_pred ----------Hhccc-cccccccc-cccchHHhhhh--------------------------------------------
Q 011197 346 ----------KAKKK-FEFLVKWG-CDLQSEHERYL-------------------------------------------- 369 (491)
Q Consensus 346 ----------~~~~~-~~~~~~~g-~~l~~~~e~~l-------------------------------------------- 369 (491)
..|.+ +.. +.+. ..+...+.+++
T Consensus 336 ~id~~~~~ak~~gakGLa~-ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~ 414 (585)
T COG0173 336 QIDELTEFAKIYGAKGLAY-IKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKE 414 (585)
T ss_pred HHHHHHHHHHHcCCCceEE-EEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 11000 000 0000 00111111111
Q ss_pred ---ccccccCccEEEEeCCCC------------CcccccccCCCC---------CceEEEEEEeCCeeEeechhhhcccH
Q 011197 370 ---TEEAFGGCPVIVSDYPKE------------IKAFYMRQNDDG---------RTVAAMDMLVPRIGELIGGSQREERL 425 (491)
Q Consensus 370 ---~~~~~~~~p~~i~~~P~~------------~~pf~~~~~~~~---------~~~~~fdl~~~G~gEi~~G~~r~~~~ 425 (491)
.++- ...++||+|||.. ++||+|+...+. -.+..|||++||+ ||+|||.|+|++
T Consensus 415 l~li~~~-~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~ 492 (585)
T COG0173 415 LGLIDKD-QFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDP 492 (585)
T ss_pred hCCCCcc-cceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCH
Confidence 1100 1269999999993 899999865421 1467899999999 999999999999
Q ss_pred HHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 426 EYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 426 ~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+.|.+.|+..|++++ .|..+|+|++||.|||||+|+|||||+|+|+|.+||||||+||++.+..
T Consensus 493 eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 493 EIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcccc
Confidence 999999999999987 4789999999999999999999999999999999999999999987653
No 22
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-87 Score=762.23 Aligned_cols=423 Identities=18% Similarity=0.236 Sum_probs=341.7
Q ss_pred CcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhh-hhcCCCC
Q 011197 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLITT 82 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~-~~~~L~~ 82 (491)
+|.++++|+++... ..|++|+|+|||+++|.+||++|++|||++| +||||++++.. .++.+ +. |+.
T Consensus 635 ~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~ 704 (1094)
T PRK02983 635 GVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA--VDL 704 (1094)
T ss_pred CCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc--CCC
Confidence 57788999998764 6788999999999999999999999999996 59999987642 23333 34 999
Q ss_pred CcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHHHHHH
Q 011197 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNALAYAT 158 (491)
Q Consensus 83 gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i~~~i 158 (491)
||+|.|+|++.+++++ ++||.+++++|+++|. .|+|++.++ .+...++||||+| ++.++++|++||+|++++
T Consensus 705 gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~i 780 (1094)
T PRK02983 705 GDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAV 780 (1094)
T ss_pred CCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 8999999999999997 455554433 3333489999996 689999999999999999
Q ss_pred HHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-
Q 011197 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE- 237 (491)
Q Consensus 159 R~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq- 237 (491)
|+||.++||+||+||+|+++.|++++++|.+ ++ +||+.++||+||||||||
T Consensus 781 R~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t-~~---------------------------~~~~~~~yLriSPELylKr 832 (1094)
T PRK02983 781 RETLVARGFLEVETPILQQVHGGANARPFVT-HI---------------------------NAYDMDLYLRIAPELYLKR 832 (1094)
T ss_pred HHHHHHCCCEEEeCCEeeccCCCcccceeEe-ee---------------------------cCCCccchhhcChHHHHHH
Confidence 9999999999999999999999888899963 32 578999999999999995
Q ss_pred HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhc
Q 011197 238 TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317 (491)
Q Consensus 238 l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~ 317 (491)
|+++|++||||||||||||+++ .||||||||||+|++|.||+|+|+++|+||++ +++.+.+... +.+.+...
T Consensus 833 LivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~----i~~~v~~~~~--~~~~~~~~- 904 (1094)
T PRK02983 833 LCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQN----AAQAAHGAPV--VMRPDGDG- 904 (1094)
T ss_pred HHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHH----HHHHHhCCcE--EeeCCccc-
Confidence 8889999999999999999995 69999999999999999999999999999999 9888865432 11100000
Q ss_pred chhhhhhhhhhcCCCccccHHHHHHH------------------HHHhccccccccccccccchHHhhhhccccccCccE
Q 011197 318 KGIIDRLSTVAERDFVQLSYTDAIEL------------------LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 379 (491)
Q Consensus 318 ~~~~~~l~~~~~~~~~~it~~ea~~~------------------l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~ 379 (491)
....-.++.||+++||.||++. +++.+++......+|..++..++.+ +++.+. +|+
T Consensus 905 ----~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~ 978 (1094)
T PRK02983 905 ----VLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHL-VEDRTT-FPT 978 (1094)
T ss_pred ----cccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHH-HHhhcC-CCE
Confidence 0000013456777777777652 2333333221111222233334444 444555 899
Q ss_pred EEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-----cCCCcccH---HHHHHHHhc
Q 011197 380 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHY 451 (491)
Q Consensus 380 ~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-----~g~~~~~~---~~yl~~~~~ 451 (491)
||+|||.+++||||+.++++.+++|||||++|+ ||+||+++++|+.+|++++.+ .+.+++.+ +|||+|++|
T Consensus 979 Fv~dyP~~~spla~~~~~~p~~~erFdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~y 1057 (1094)
T PRK02983 979 FYTDFPTSVSPLTRPHRSDPGLAERWDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEY 1057 (1094)
T ss_pred EEECCCcccccccccCCCCCCeeEEEEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHc
Confidence 999999999999997777788999999999998 999999999999999777754 45566655 699999999
Q ss_pred CCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 452 GSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 452 G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||||||||||||||+|++||. |||||++||+...
T Consensus 1058 GmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1058 AMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred CCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 9999999999999999999996 9999999999764
No 23
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.4e-85 Score=703.17 Aligned_cols=432 Identities=22% Similarity=0.320 Sum_probs=325.0
Q ss_pred cccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcE
Q 011197 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGAS 85 (491)
Q Consensus 8 ~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~ 85 (491)
..++++|.+|... +.|++|+|+|||+++|++|+++|++|||++|. +|||++++. ..++.++. |+.||+
T Consensus 57 ~~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esv 126 (652)
T PLN02903 57 PSRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYV 126 (652)
T ss_pred ccCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCE
Confidence 3467899999874 79999999999999999999999999999975 999998653 23455667 999999
Q ss_pred EEEEEEEEecC-------CCceeEEEEEeeEEEEccCCCCCCCCcc-------ccChhhhccCccccCCChHHHHHHHHH
Q 011197 86 IWIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVR 151 (491)
Q Consensus 86 V~V~G~v~~~~-------~~~~~~el~~~~i~ils~~~~~~P~~~~-------~~~~~~~r~~~~l~~R~~~~~~~~~~R 151 (491)
|.|+|+|.+++ ..+|++||.+++++|||+|..++|++.. ..+.+..+++||||+|++.++++|++|
T Consensus 127 V~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~R 206 (652)
T PLN02903 127 VAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLR 206 (652)
T ss_pred EEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHH
Confidence 99999999763 1246899999999999999655665432 245666679999999999999999999
Q ss_pred HHHHHHHHHHHhh-CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccccccc
Q 011197 152 NALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (491)
Q Consensus 152 s~i~~~iR~ff~~-~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~ 230 (491)
|++++++|+||.+ +||+||+||+|+++++||+++.|.+.... .+..+||+|
T Consensus 207 s~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~----------------------------~g~~y~L~q 258 (652)
T PLN02903 207 HRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQ----------------------------PGTFYALPQ 258 (652)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecC----------------------------CCcccccCC
Confidence 9999999999997 99999999999999999998876442211 134447999
Q ss_pred chhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 011197 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM 309 (491)
Q Consensus 231 Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l 309 (491)
|||+||| +|++|++||||||||||||+++++|| |||||||||++|+|++|+|+++|+||++ +++.+.+..
T Consensus 259 SPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~----v~~~~~~~~---- 329 (652)
T PLN02903 259 SPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQ----VFKEIKGVQ---- 329 (652)
T ss_pred CHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCC----
Confidence 9999998 68899999999999999999988888 9999999999999999999999999999 877665421
Q ss_pred cccchhhcchhhhhhhhhhc--------------------------------------------CCCccccHH---HHHH
Q 011197 310 DFFNTWIEKGIIDRLSTVAE--------------------------------------------RDFVQLSYT---DAIE 342 (491)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~--------------------------------------------~~~~~it~~---ea~~ 342 (491)
...+|.+.++.+++.++.. ..+.+-... +.+.
T Consensus 330 -~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 408 (652)
T PLN02903 330 -LPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYN 408 (652)
T ss_pred -CCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHH
Confidence 0001111111111111000 001000010 0000
Q ss_pred HHHHhc---cc---cc-c-cccc--c--cccchH-Hh--------------------------------hh------hcc
Q 011197 343 LLIKAK---KK---FE-F-LVKW--G--CDLQSE-HE--------------------------------RY------LTE 371 (491)
Q Consensus 343 ~l~~~~---~~---~~-~-~~~~--g--~~l~~~-~e--------------------------------~~------l~~ 371 (491)
...+.| .. +. . .... . .-++.+ .+ .. |.+
T Consensus 409 ~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~ 488 (652)
T PLN02903 409 EAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLID 488 (652)
T ss_pred HHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCC
Confidence 011111 00 00 0 0000 0 000000 00 00 111
Q ss_pred ccccCccEEEEeCCCC------------CcccccccCCCC-----CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH
Q 011197 372 EAFGGCPVIVSDYPKE------------IKAFYMRQNDDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~------------~~pf~~~~~~~~-----~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~ 434 (491)
+- ...++||+|||.. ++||+++..+|- ..+..|||++||+ ||+|||+|+|+++.|++.|+.
T Consensus 489 ~~-~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~ 566 (652)
T PLN02903 489 PS-RHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEA 566 (652)
T ss_pred CC-CceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHH
Confidence 10 1269999999994 899999755432 2467899999998 999999999999999999999
Q ss_pred cCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 435 LKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 435 ~g~~~~----~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
.|++++ .|+|||+|++||+|||||+|+|+|||+|+|+|.+||||||+||++.+..
T Consensus 567 ~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~IrdviaFPKt~~g~ 625 (652)
T PLN02903 567 IGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQ 625 (652)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHheEecCCCCCcc
Confidence 999876 4799999999999999999999999999999999999999999987653
No 24
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-86 Score=653.38 Aligned_cols=431 Identities=26% Similarity=0.439 Sum_probs=374.6
Q ss_pred CcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhh-hcCCCC
Q 011197 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK-SGLITT 82 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~-~~~L~~ 82 (491)
.=+..+.++||... ..++.|+|+|||++.|..||++|+.||++.. ++||++..+.. ...+++ .++|+.
T Consensus 66 ~~~~~~~v~dl~~~------~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~is~ 137 (533)
T KOG0556|consen 66 EGRELTDVSDLDES------NDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGSISK 137 (533)
T ss_pred cccceeehhhhhhh------cCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhhcCc
Confidence 33455678888754 7889999999999999999999999999974 69999976543 222211 233999
Q ss_pred CcEEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCCCCCCCcccc--------------------ChhhhccCccc
Q 011197 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRV--------------------SREFLRTKAHL 137 (491)
Q Consensus 83 gd~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~~~P~~~~~~--------------------~~~~~r~~~~l 137 (491)
||+|.|.|+|++.+. ..+++||++.++.+||.+.+.+|++-++. ..+..++||.|
T Consensus 138 ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvl 217 (533)
T KOG0556|consen 138 ESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVL 217 (533)
T ss_pred ceEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceee
Confidence 999999999998754 35789999999999999999899875432 12334499999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
|+|+|.++++||+.+.+..++|+||..+||+||+||.|.++++||++.+|.|
T Consensus 218 DLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v---------------------------- 269 (533)
T KOG0556|consen 218 DLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV---------------------------- 269 (533)
T ss_pred ecccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE----------------------------
Confidence 9999999999999999999999999999999999999999999999999987
Q ss_pred cccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSC 295 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~ 295 (491)
+||+.++||+||||||+| +++++++|||+|||+||+|+++|.||+.||+-||.||+|. .|+++|+.+.+++.+
T Consensus 270 --~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~--- 344 (533)
T KOG0556|consen 270 --SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVF--- 344 (533)
T ss_pred --EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHH---
Confidence 799999999999999998 6788899999999999999999999999999999999998 599999999999999
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhc----c
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----E 371 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----~ 371 (491)
+++.+.++++.+|...++.++.+ .++ ++ .|..+++|.|++++|++.|++.. ..+||+++-|+.|. +
T Consensus 345 -IF~~l~ery~~Eie~Vr~qyp~e---~fk-f~-~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~e 414 (533)
T KOG0556|consen 345 -IFKGLRERYAKEIETVRKQYPFE---PFK-FL-EPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVRE 414 (533)
T ss_pred -HHHHHHHHHHHHHHHHhhcCCCc---ccc-cC-CCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHH
Confidence 99999998888887776655321 111 22 46678999999999999998633 23588888888765 4
Q ss_pred ccccCccEEEEeCCCCCcccccccCCC-CCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHh
Q 011197 372 EAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRH 450 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~ 450 (491)
++.. .+.++.+||...+|||.+.+++ +.++++||+++.| .||.+|.||.|+++.+.++++++|+++.....|+++++
T Consensus 415 ky~t-dfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFr 492 (533)
T KOG0556|consen 415 KYDT-DFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFR 492 (533)
T ss_pred HhCC-cEEEEccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 5544 7888999999999999777754 4589999999999 59999999999999999999999999999999999999
Q ss_pred cCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 451 ~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
||+|||||+|||+||++|+++|+.|||-..+|||+|.|+.
T Consensus 493 yG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~ 532 (533)
T KOG0556|consen 493 YGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLT 532 (533)
T ss_pred cCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCccccC
Confidence 9999999999999999999999999999999999999974
No 25
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-87 Score=671.90 Aligned_cols=438 Identities=19% Similarity=0.270 Sum_probs=373.3
Q ss_pred CCcccceeeccccCCcc---cCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc----cchhhhhh
Q 011197 6 GEFRKKLKIVDVKGGPN---EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~---~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~~~ 77 (491)
.+|..++++.++...|. +++...+..|+|+|||+++|.+| |++|+||++++ .+|||+++.+. +.|.+..+
T Consensus 78 hkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g--~klQvm~~~~~~~~~~~F~~~~~ 155 (560)
T KOG1885|consen 78 HKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDG--VKLQVMANAKKITSEEDFEQLHK 155 (560)
T ss_pred chhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCC--eEEEEEEehhhcCCHHHHHHHHh
Confidence 46778899999988775 37777788899999999999986 99999999986 46999999764 35666442
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccCh---hhhccCccccCCC-hHHHHHHHHHHH
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRT-NTFGAVARVRNA 153 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~---~~~r~~~~l~~R~-~~~~~~~~~Rs~ 153 (491)
+|+.||+|+|.|.+.+|+.+ +++|.++++.+||+|+.++| .+..++ |..-++||+|+-. +..+..|++|++
T Consensus 156 -~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcLh~lP--~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~Rak 230 (560)
T KOG1885|consen 156 -FLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCLHMLP--HEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAK 230 (560)
T ss_pred -hhhccCEEeeecCCCcCCCc--eEEEeecchheecchhccCC--hhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 49999999999999999877 89999999999999996554 333332 2222689999875 578999999999
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchh
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spq 233 (491)
|++.||.||+++||+||+||+|...++++.|+|| ||++|. ++.++||+++||
T Consensus 231 II~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hnd---------------------------ldm~LylRiAPE 282 (560)
T KOG1885|consen 231 IISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHND---------------------------LDMDLYLRIAPE 282 (560)
T ss_pred HHHHHHHHhhhcCceEecchhhccccCccccCce-eecccc---------------------------cCcceeeeechH
Confidence 9999999999999999999999999999999999 677752 378899999999
Q ss_pred hHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc------
Q 011197 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK------ 306 (491)
Q Consensus 234 l~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~------ 306 (491)
||+ +|+++|++||||||+.||||++ +.+||||||.+|+|+||+||+|+|+++|+|++. ++..+.++.+
T Consensus 283 L~lK~LvVGGldrVYEIGr~FRNEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~----mv~~i~G~~~i~y~p~ 357 (560)
T KOG1885|consen 283 LYLKMLVVGGLDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSG----MVKNITGSYKITYHPN 357 (560)
T ss_pred HHHHHHHhccHHHHHHHHHHhhhcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHH----HHHhhcCceeEeecCC
Confidence 999 7999999999999999999999 689999999999999999999999999999999 9999877542
Q ss_pred ------ccccccchhhcchhhhhhhhhhcCCCc---cccHHHHHHHHHHh----ccccccccccccccchHHhhhhcccc
Q 011197 307 ------EDMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEA 373 (491)
Q Consensus 307 ------~~l~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~~l~~~----~~~~~~~~~~g~~l~~~~e~~l~~~~ 373 (491)
.++++..+|.+.+|++.|++.++.+++ .+.-.|+-++|... ++++..+-..+..|+..++.+|.+.
T Consensus 358 ~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~- 436 (560)
T KOG1885|consen 358 GPEEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPT- 436 (560)
T ss_pred CCCCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccc-
Confidence 247788899999999999999999987 46677887777654 3333333233456777788777764
Q ss_pred ccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc------CCCccc--HHHH
Q 011197 374 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWY 445 (491)
Q Consensus 374 ~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~------g~~~~~--~~~y 445 (491)
+. +|+||.|+|..|+|+++.+.+..+.++|||||++|- ||||+|.+++|+-.|+++|.++ |.|+.. .+.|
T Consensus 437 cv-nPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~F 514 (560)
T KOG1885|consen 437 CV-NPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDF 514 (560)
T ss_pred cC-CCeeEcCCchhcCccccccccccchhhHHHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHH
Confidence 44 799999999999999998777778999999999996 9999999999999999888653 544332 3889
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 446 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 446 l~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.|++||+||+||||||||||+|+||+..|||||++||-..
T Consensus 515 c~ALEYGlPPtgGwGmGIDRL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 515 CTALEYGLPPTGGWGMGIDRLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred HHHHHcCCCCCCccccchhhhhhhhcCCcchhheeeccccC
Confidence 99999999999999999999999999999999999999653
No 26
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.6e-84 Score=696.45 Aligned_cols=430 Identities=24% Similarity=0.356 Sum_probs=327.7
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (491)
.++++|.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.....++.++. |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 367899999764 68999999999999999999999999999975 99999863334666777 999999999
Q ss_pred EEEEEecCCC-------ceeEEEEEeeEEEEccCCCCCCCCcc--ccChhhhc-cCccccCCChHHHHHHHHHHHHHHHH
Q 011197 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYAT 158 (491)
Q Consensus 89 ~G~v~~~~~~-------~~~~el~~~~i~ils~~~~~~P~~~~--~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~i 158 (491)
+|+|.+++.+ ++++||.|++++|||+|. ++|++.. ....+.+| ++||||+|++.++++|++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 568999999999999998 6776642 22334444 99999999999999999999999999
Q ss_pred HHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-
Q 011197 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE- 237 (491)
Q Consensus 159 R~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq- 237 (491)
|+||.++||+||+||+|+++++||+++ |.+... .+.+..+||+||||+|||
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~---------------------------~~~~~~~~L~qSpql~kq~ 203 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPSR---------------------------VHPGKFYALPQSPQLFKQL 203 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceeccc---------------------------ccCCceeecCCCHHHHHHH
Confidence 999999999999999999999998776 644211 123444579999999997
Q ss_pred HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhc
Q 011197 238 TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317 (491)
Q Consensus 238 l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~ 317 (491)
|+++|++||||||||||||+++++||+ ||||||||++|+|++|+|+++|+||++ +++.+.+.. + ..+|.+
T Consensus 204 l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~----i~~~~~~~~---~--~~pf~r 273 (588)
T PRK00476 204 LMVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRH----VFKEVLGVD---L--PTPFPR 273 (588)
T ss_pred HHhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHH----HHHHHhCcc---C--CCCceE
Confidence 688999999999999999999888885 999999999999999999999999999 887765421 0 011111
Q ss_pred chhhhhhhhh-------------------------------h-------cCCCc-------cccHHHHHHHHHHhcc---
Q 011197 318 KGIIDRLSTV-------------------------------A-------ERDFV-------QLSYTDAIELLIKAKK--- 349 (491)
Q Consensus 318 ~~~~~~l~~~-------------------------------~-------~~~~~-------~it~~ea~~~l~~~~~--- 349 (491)
.++.++++++ + +..++ +-..++..++.+..|.
T Consensus 274 ~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL 353 (588)
T PRK00476 274 MTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGL 353 (588)
T ss_pred EEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCce
Confidence 1111111110 0 00011 1112333333332220
Q ss_pred ---cccc-cc----------------------cccccc---chH---Hh-------hh------hccccccCccEEEEeC
Q 011197 350 ---KFEF-LV----------------------KWGCDL---QSE---HE-------RY------LTEEAFGGCPVIVSDY 384 (491)
Q Consensus 350 ---~~~~-~~----------------------~~g~~l---~~~---~e-------~~------l~~~~~~~~p~~i~~~ 384 (491)
.+.. .. +-|+.+ ... .. .. |.+. ....++||+||
T Consensus 354 ~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~-~~~~f~Wv~df 432 (588)
T PRK00476 354 AYIKVNEDGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDE-DKFAFLWVVDF 432 (588)
T ss_pred EEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCC-CCceEEEEEeC
Confidence 0000 00 000000 000 00 00 1111 11369999999
Q ss_pred CCC------------CcccccccCCC--------C--CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcc--
Q 011197 385 PKE------------IKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD-- 440 (491)
Q Consensus 385 P~~------------~~pf~~~~~~~--------~--~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~-- 440 (491)
|.. ++||+++...| + ..+.+|||++||+ ||+|||+|+|+++.|++.|+..|++++
T Consensus 433 Plf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~ 511 (588)
T PRK00476 433 PMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEA 511 (588)
T ss_pred CCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHH
Confidence 994 89999975543 2 2578999999998 999999999999999999999999876
Q ss_pred --cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 441 --SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 441 --~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
.|+|||+|++||+|||||+|||+|||+|+|+|.+||||||+||++.+..
T Consensus 512 ~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~~g~ 562 (588)
T PRK00476 512 EEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQSAQ 562 (588)
T ss_pred HHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCCCcc
Confidence 5899999999999999999999999999999999999999999987653
No 27
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-84 Score=635.38 Aligned_cols=414 Identities=31% Similarity=0.551 Sum_probs=374.8
Q ss_pred CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEEEEEEEecCCC---cee
Q 011197 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---KQK 101 (491)
Q Consensus 26 ~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G~v~~~~~~---~~~ 101 (491)
++.|+.|+|.|||++.|.+++++||.||||+|+ ||||++.+. ..|+.+ . |.+++.|.|.|++++.+.+ .++
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apgg 194 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPGG 194 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCCC
Confidence 578999999999999999999999999999986 999999764 234443 4 9999999999999998654 468
Q ss_pred EEEEEeeEEEEccCCCC---CCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeecc
Q 011197 102 VELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 102 ~el~~~~i~ils~~~~~---~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
.||.|+.++|++.|+++ .|+. ...+++.++++|||-+|....+.++++|+.+++++|++|.+.||+||.+|.|++.
T Consensus 195 hEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQT 273 (545)
T KOG0555|consen 195 HELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQT 273 (545)
T ss_pred ceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEE
Confidence 99999999999999865 3443 3567888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCC
Q 011197 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (491)
Q Consensus 179 ~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~ 258 (491)
..||++.+|.+ +|||.++||+||+|||++....++++||+|.++||+|.+
T Consensus 274 QVEGGsTLFkl------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 274 QVEGGSTLFKL------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKS 323 (545)
T ss_pred EecCcceEEee------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhh
Confidence 99999999976 899999999999999999999999999999999999999
Q ss_pred CCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccchhhcchhhhhhhhhhcCCCccccH
Q 011197 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSY 337 (491)
Q Consensus 259 ~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~it~ 337 (491)
+|+|||+|||++|+|++|.+++++|+.+|+|+.. .+.++++.+.. .+...++.+ +....||.|+.|
T Consensus 324 rTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~----~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y 390 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCD----SVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNY 390 (545)
T ss_pred hhhhhhhhheeeeeecccccHHHHHHHHHHHHHH----HHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCH
Confidence 9999999999999999999999999999999999 99999876543 333333221 235679999999
Q ss_pred HHHHHHHHHhcccccc--ccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEEEEEeCCeeE
Q 011197 338 TDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGE 414 (491)
Q Consensus 338 ~ea~~~l~~~~~~~~~--~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~gE 414 (491)
.||+++|++++++.+. ..++|+|+....|+.+.+.++ .|+|+++||.++++|||++.. |++.+++.|+++|||||
T Consensus 391 ~dAI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGE 468 (545)
T KOG0555|consen 391 SDAIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGE 468 (545)
T ss_pred HHHHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccc
Confidence 9999999999876443 257899999999999999765 699999999999999998765 55789999999999999
Q ss_pred eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 415 LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 415 i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
|+|||+|+.+.+++.+.+++.|+|+++|.||++.++||..||||+|||+||++|||++..+||||.+|||..+||.
T Consensus 469 IvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 469 IVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred cccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
No 28
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.3e-82 Score=688.36 Aligned_cols=434 Identities=21% Similarity=0.300 Sum_probs=317.8
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~ 85 (491)
.++++|.+|... +.|++|+|+|||+++|++|+++|++|||++|. ||||++++. ..++.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 367999999875 78999999999999999999999999999975 999998653 23555667 999999
Q ss_pred EEEEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCC--ccc-----------cChhhhc-cCccccCCChHH
Q 011197 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (491)
Q Consensus 86 V~V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~--~~~-----------~~~~~~r-~~~~l~~R~~~~ 144 (491)
|.|+|+|.+++. .++++||.+++++||++|. .+|++ ++. ...+.+| ++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999998532 2368999999999999996 34554 331 1234455 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
+++|++||++++++|+||.++||+||+||+|++++++|+++.+... .++..
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~-----------------------------~~~~~ 203 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPS-----------------------------RIHPK 203 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEee-----------------------------ecCCC
Confidence 9999999999999999999999999999999999999988765321 11222
Q ss_pred cc-ccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011197 225 PA-FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302 (491)
Q Consensus 225 ~~-~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~ 302 (491)
.+ +|+||||+||| ||++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||++ +++...
T Consensus 204 ~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~----v~~~~~ 278 (706)
T PRK12820 204 EFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTAR----MFAIGG 278 (706)
T ss_pred cceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHH----HHHhcC
Confidence 33 49999999998 67899999999999999999988777 9999999999999999999999999999 664110
Q ss_pred -------------------hcCcccccccchhhcc-------h---hhhhhhh---hhcCC-------CccccHHHHH--
Q 011197 303 -------------------DNCKEDMDFFNTWIEK-------G---IIDRLST---VAERD-------FVQLSYTDAI-- 341 (491)
Q Consensus 303 -------------------~~~~~~l~~~~~~~~~-------~---~~~~l~~---~~~~~-------~~~it~~ea~-- 341 (491)
+..++|+.+--...+. + +...+++ +.+.. +.+-..++++
T Consensus 279 ~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~ 358 (706)
T PRK12820 279 IALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAK 358 (706)
T ss_pred cCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHH
Confidence 0111222211000000 0 0000000 00000 1111111101
Q ss_pred HHHHHhcc------cccc-c----------------------ccccccc------c-h----H---Hhhh------hccc
Q 011197 342 ELLIKAKK------KFEF-L----------------------VKWGCDL------Q-S----E---HERY------LTEE 372 (491)
Q Consensus 342 ~~l~~~~~------~~~~-~----------------------~~~g~~l------~-~----~---~e~~------l~~~ 372 (491)
++.+..|. .... . .+-|+.+ . . . .-.. |.+.
T Consensus 359 ~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~ 438 (706)
T PRK12820 359 EIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPE 438 (706)
T ss_pred HHHHHcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCC
Confidence 11112110 0000 0 0000000 0 0 0 0000 1111
Q ss_pred cccCccEEEEeCCC-----------CCcccccccCCC--------C--CceEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 373 AFGGCPVIVSDYPK-----------EIKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 373 ~~~~~p~~i~~~P~-----------~~~pf~~~~~~~--------~--~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
- ...++||+|||. .++||+++..+| + -.+..|||++||+ ||+|||+|+|+++.|++.
T Consensus 439 ~-~~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~ 516 (706)
T PRK12820 439 G-VFHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRI 516 (706)
T ss_pred C-CceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHH
Confidence 0 136899999999 479999975432 1 1467999999998 999999999999999999
Q ss_pred HHHcCCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 432 LDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 432 ~~~~g~~~~~----~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
|+..|+++++ |++||+|++||+|||||+|+|+|||+|+|||.+||||||+||++....
T Consensus 517 f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~g~ 578 (706)
T PRK12820 517 FAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRSAA 578 (706)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCCCC
Confidence 9999998754 789999999999999999999999999999999999999999987653
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.2e-80 Score=630.62 Aligned_cols=319 Identities=45% Similarity=0.782 Sum_probs=285.3
Q ss_pred cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCC
Q 011197 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (491)
Q Consensus 126 ~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (491)
++.++++++||||+|++.+++++++||.|++++|+||.++||+||+||+|+++++++++++|++
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 4577888999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHH
Q 011197 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~ 284 (491)
+||++++||++|||+|||+++.|++|||+||||||||++++.||||||||||||++|+ |++|+|+
T Consensus 66 --------------~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 --------------SYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --------------ccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHH
Confidence 7889999999999999986655599999999999999998899999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchH
Q 011197 285 CATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 364 (491)
Q Consensus 285 ~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~ 364 (491)
++|++|++ ++..+.+.++.++..... .......+..||+++||.||++++++.+.. ....||.+++.+
T Consensus 132 ~~e~ll~~----~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~ 199 (322)
T cd00776 132 LIEELIKY----IFKRVLERCAKELELVNQ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTE 199 (322)
T ss_pred HHHHHHHH----HHHHHHhccHHHHhhhhc------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHH
Confidence 99999999 999998877666544210 011111235689999999999999987753 225689999999
Q ss_pred HhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHH
Q 011197 365 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 443 (491)
Q Consensus 365 ~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~ 443 (491)
+|++|.+.+.. +|+||+|||.+++|||++.++ ++++++|||||++|++||+||++|++|+++|+++++++|++++.++
T Consensus 200 ~e~~l~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~ 278 (322)
T cd00776 200 HERLLGEIVKG-DPVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFE 278 (322)
T ss_pred HHHHHHHHhCC-CcEEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHH
Confidence 99999875533 899999999999999987654 4479999999999966999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 444 ~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||+|+++|+|||||||||||||+|++||.+|||||++|||+|+
T Consensus 279 ~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 279 WYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999999999999999999999999999985
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=2e-78 Score=616.62 Aligned_cols=318 Identities=29% Similarity=0.486 Sum_probs=279.5
Q ss_pred ChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCC----CceeeeecCCCcccccCC
Q 011197 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG----EQFCVTTLIPSSREAAES 202 (491)
Q Consensus 127 ~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~----~~F~vt~~~~~~~~~~~~ 202 (491)
+.+...++|++++|++.++++|++||+|++++|+||.++||+||+||+|+++++++.+ .+|.+.
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~------------ 76 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQI------------ 76 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccc------------
Confidence 5566678999999999999999999999999999999999999999999998776432 223221
Q ss_pred CCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCC--CcccccccceeeEeccCCHH
Q 011197 203 PVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLK 280 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~ 280 (491)
..+||++++||++|||+|||++++|++||||||||||||++++ .||||||||||||++|+|++
T Consensus 77 ---------------~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~ 141 (335)
T PRK06462 77 ---------------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLD 141 (335)
T ss_pred ---------------ccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHH
Confidence 1368899999999999999999999999999999999999976 69999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccc
Q 011197 281 DDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360 (491)
Q Consensus 281 ~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~ 360 (491)
|+|+++|+||++ +++.+.++++.++...+.. + ..+..||+++||.||+++|++.+.+ ...+.+
T Consensus 142 dlm~~~e~lv~~----i~~~~~~~~~~~i~~~~~~--------~-~~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~ 204 (335)
T PRK06462 142 EVMDLIEDLIKY----LVKELLEEHEDELEFFGRD--------L-PHLKRPFKRITHKEAVEILNEEGCR----GIDLEE 204 (335)
T ss_pred HHHHHHHHHHHH----HHHHHHhhhHHHHHhcCCc--------c-ccCCCCCeEEEHHHHHHHHHhcCCC----cchHHH
Confidence 999999999999 9998888776666554321 0 0135689999999999999887654 233668
Q ss_pred cchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEEEEEeC-CeeEeechhhhcccHHHHHHHHHHcCCC
Q 011197 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLN 438 (491)
Q Consensus 361 l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~-G~gEi~~G~~r~~~~~~~~~~~~~~g~~ 438 (491)
++..+|++|.+.+ . .||||+|||+.++|||++.++ ++.+++|||||++ |+|||+||++|+++++++.++++++|++
T Consensus 205 l~~~~E~~l~~~~-~-~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~ 282 (335)
T PRK06462 205 LGSEGEKSLSEHF-E-EPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVD 282 (335)
T ss_pred HhHHHHHHHHHHh-C-CCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCC
Confidence 8889999988654 4 799999999999999987654 4568999999997 8899999999999999999999999999
Q ss_pred cccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 439 RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 439 ~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+|++..
T Consensus 283 ~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 283 PEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred hHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheeeeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999864
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=6.8e-78 Score=616.00 Aligned_cols=315 Identities=40% Similarity=0.673 Sum_probs=260.6
Q ss_pred hhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCC
Q 011197 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (491)
Q Consensus 128 ~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (491)
.++++++|||++|++.++++|++||.+++++|+||.++||+||+||+|++++++|++++|.|.. .
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~-~-------------- 66 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDS-E-------------- 66 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEE-S--------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCcccccccccc-c--------------
Confidence 4667899999999999999999999999999999999999999999999999999999998743 1
Q ss_pred CCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHH
Q 011197 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
..+||++++||++|||+||| ++++|++||||||||||||+++|.||+|||||||||++|+|++++|+++
T Consensus 67 ----------~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~ 136 (335)
T PF00152_consen 67 ----------PGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLI 136 (335)
T ss_dssp ----------TTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHH
T ss_pred ----------hhhhcccceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHH
Confidence 13789999999999999997 6777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc------------
Q 011197 287 TAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL------------ 354 (491)
Q Consensus 287 e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~------------ 354 (491)
|+||++ +++.+.+.... . .+.-.+..+|++++|.||++++...+.+....
T Consensus 137 e~li~~----i~~~~~~~~~~-~-------------~~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (335)
T PF00152_consen 137 EELIKY----IFKELLENAKE-L-------------SLNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEEL 198 (335)
T ss_dssp HHHHHH----HHHHHHHHHHH-H-------------HTCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHT
T ss_pred HHHHHH----HHHHHhccCcc-c-------------cccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcc
Confidence 999999 88877643100 0 00111345699999999999988765322110
Q ss_pred -cccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCC-CceEEEEEEeCCeeEeechhhhcccHHHHHHHH
Q 011197 355 -VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 432 (491)
Q Consensus 355 -~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~ 432 (491)
..+|.++...+|+.|++.... .|+||+|||..++|||+..++++ .+++|||||++| +||+|||+|+||+++|++++
T Consensus 199 ~~~~~~~l~~~~e~~L~~~~~~-~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~ 276 (335)
T PF00152_consen 199 EFEVGRLLSEEVEPYLVEKYFT-DPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERF 276 (335)
T ss_dssp THHCHHHHHHHHHHHHHHHHSS-SEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhcccC-CcEEEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHh
Confidence 112556777888877754444 89999999999999999888776 799999999999 59999999999999999999
Q ss_pred HHcCCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 433 DELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 433 ~~~g~~~~~----~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
++.+.+++. ++|||+|+++|+|||||||||+|||+|++||.+|||||++|||++.
T Consensus 277 ~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 277 EEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred hhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 999987777 8999999999999999999999999999999999999999999863
No 32
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-71 Score=558.81 Aligned_cols=412 Identities=22% Similarity=0.328 Sum_probs=315.6
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhh--hhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~--~~~~~L~~gd~V~ 87 (491)
++..|.++..+ .+|++|.++||+...|.+|.+.|..|||..|. +|+.++.+.....+ ... ++.+|+|.
T Consensus 34 ~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv~ 103 (628)
T KOG2411|consen 34 RTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVVQ 103 (628)
T ss_pred hhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheEe
Confidence 45778888765 79999999999999999999999999999974 89888876532222 233 89999999
Q ss_pred EEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccc-------cChhhhccCccccCCChHHHHHHHHHHH
Q 011197 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRNA 153 (491)
Q Consensus 88 V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~-------~~~~~~r~~~~l~~R~~~~~~~~~~Rs~ 153 (491)
|+|+++..+. .+|.+|+.++++++++++...+|+.-.+ .+......+|||+||.+.++..+|+||.
T Consensus 104 v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~ 183 (628)
T KOG2411|consen 104 VEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSN 183 (628)
T ss_pred eeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHH
Confidence 9999987632 3578999999999999998878865321 2333344899999999999999999999
Q ss_pred HHHHHHHHHhh-CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccch
Q 011197 154 LAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (491)
Q Consensus 154 i~~~iR~ff~~-~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Sp 232 (491)
+...+|+||.+ .||+||+||+|...+++|+.++. |.+..+ . +.||. |.|||
T Consensus 184 ~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~EFv-VPtr~~-----------------~------g~FYa----LpQSP 235 (628)
T KOG2411|consen 184 VVKKIRRYLNNRHGFVEVETPTLFKRTPGGAREFV-VPTRTP-----------------R------GKFYA----LPQSP 235 (628)
T ss_pred HHHHHHHHHhhhcCeeeccCcchhccCCCccceee-cccCCC-----------------C------Cceee----cCCCH
Confidence 99999999976 56999999999999999988865 432211 1 35664 77999
Q ss_pred hhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 011197 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDF 311 (491)
Q Consensus 233 ql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~ 311 (491)
|.||| ||++|++|+|||++|||+|+++.+|+ |||||+|+||+|.+.+|+|+++|+++++ ++....+.
T Consensus 236 QQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~----~ws~~k~~------- 303 (628)
T KOG2411|consen 236 QQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRY----VWSEDKGI------- 303 (628)
T ss_pred HHHHHHHHHhchhhHHhHHhhhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHH----hchhhcCC-------
Confidence 99999 78999999999999999999999998 9999999999999999999999999999 65544321
Q ss_pred cchhhcchhhhhhhhhhcCCCccccHHHHHHH------------------------------------------------
Q 011197 312 FNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL------------------------------------------------ 343 (491)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~------------------------------------------------ 343 (491)
-+..||+||||+||++.
T Consensus 304 ---------------~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~ 368 (628)
T KOG2411|consen 304 ---------------QLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYS 368 (628)
T ss_pred ---------------CCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEecccccc
Confidence 01223344444443331
Q ss_pred -------------------------------------------------HHHhccccccc--ccccc-------------
Q 011197 344 -------------------------------------------------LIKAKKKFEFL--VKWGC------------- 359 (491)
Q Consensus 344 -------------------------------------------------l~~~~~~~~~~--~~~g~------------- 359 (491)
.+..+..-++- ..+|.
T Consensus 369 ~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL 448 (628)
T KOG2411|consen 369 NSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRL 448 (628)
T ss_pred chhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHH
Confidence 11111100000 00111
Q ss_pred ccchHHhhhhccccccCccEEEEeCCCC-------------CcccccccCCC-------C--CceEEEEEEeCCeeEeec
Q 011197 360 DLQSEHERYLTEEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD-------G--RTVAAMDMLVPRIGELIG 417 (491)
Q Consensus 360 ~l~~~~e~~l~~~~~~~~p~~i~~~P~~-------------~~pf~~~~~~~-------~--~~~~~fdl~~~G~gEi~~ 417 (491)
.+...+.+.+.++. ....+||+|||.. ++||++++.+| + -....|||++||+ ||+|
T Consensus 449 ~l~~l~~~~l~d~~-~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGG 526 (628)
T KOG2411|consen 449 VLQDLLVKNLRDKS-KFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGG 526 (628)
T ss_pred HHHHHHhccccccc-cceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecC
Confidence 01111111111111 1268899999995 78999876543 1 1357899999998 9999
Q ss_pred hhhhcccHHHHHHHHHHc-CCCcccH--HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 418 GSQREERLEYLEGRLDEL-KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 418 G~~r~~~~~~~~~~~~~~-g~~~~~~--~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
||.|+|+.+.|.-.++.. +.+.+.+ +..|+|+.+|+|||||||+|+|||+|+|||.+||||||+||++...
T Consensus 527 GSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~G 600 (628)
T KOG2411|consen 527 GSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTTG 600 (628)
T ss_pred ceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCCc
Confidence 999999999998888854 4444444 4899999999999999999999999999999999999999998654
No 33
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=3.5e-71 Score=562.59 Aligned_cols=297 Identities=21% Similarity=0.291 Sum_probs=247.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
+.++++|++||.+++++|+||.++||+||+||+|+++++++++++|.+. .+|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~----------------------------~~~ 53 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH----------------------------HNA 53 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec----------------------------cCC
Confidence 5688999999999999999999999999999999998888778899641 157
Q ss_pred cCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300 (491)
Q Consensus 222 f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~ 300 (491)
|+.++||+||||+||| ++++|++|||+||||||||++ ++||||||||||||++|+|++|+|+++|++|++ +++.
T Consensus 54 ~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~----i~~~ 128 (329)
T cd00775 54 LDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSG----LVKK 128 (329)
T ss_pred CCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHH----HHHH
Confidence 7999999999999995 778899999999999999999 689999999999999999999999999999999 9888
Q ss_pred HHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcc---------------------cccccccccc
Q 011197 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK---------------------KFEFLVKWGC 359 (491)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~---------------------~~~~~~~~g~ 359 (491)
+.+.+ ++.+.... .....||+++||.||++.+..... ++.....|+.
T Consensus 129 ~~~~~--~~~~~~~~----------~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (329)
T cd00775 129 INGKT--KIEYGGKE----------LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGK 196 (329)
T ss_pred HhCCc--eeecCCcc----------ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHH
Confidence 86543 33322110 012358999999999986532111 1111113444
Q ss_pred ccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc----
Q 011197 360 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL---- 435 (491)
Q Consensus 360 ~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~---- 435 (491)
.++..+++++.+.+ + +|+||+|||+.++||||..++++++++|||||++|+ ||+||++|++++.++++++.+.
T Consensus 197 ~l~~l~~~~ve~~~-~-~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~ 273 (329)
T cd00775 197 LLDKLFEEFVEPTL-I-QPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQK 273 (329)
T ss_pred HHHHHHHHHhcccc-C-CCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHH
Confidence 45556667666544 4 899999999999999986666678999999999998 9999999999999999988763
Q ss_pred --CCCccc--HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 436 --KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 436 --g~~~~~--~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.+++. ++|||+|+++|+|||||||||+|||+|+++|.+|||||++||++.
T Consensus 274 ~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 274 EAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HcCCCccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 555543 589999999999999999999999999999999999999999975
No 34
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=3e-70 Score=550.12 Aligned_cols=290 Identities=22% Similarity=0.279 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeecc-CCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~-~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (491)
+++|+.+++++|+||.++||+||+||+|+++ .+++++++|++...+ .+++++++
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~-------------------------~~~~~~~~ 55 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLG-------------------------PDGEGRPL 55 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccC-------------------------CCCCCcce
Confidence 5789999999999999999999999999998 467889999763322 13457899
Q ss_pred ccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011197 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305 (491)
Q Consensus 227 ~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~ 305 (491)
||++||||||| ++++|++||||||||||||++ ++||||||||||||++|.|++|+|+++|+|+++ +++.+
T Consensus 56 yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~----i~~~~---- 126 (304)
T TIGR00462 56 YLQTSPEYAMKRLLAAGSGPIFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQE----LLGDP---- 126 (304)
T ss_pred eeecCHHHHHHHHHhccCCCEEEEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHH----HHHhc----
Confidence 99999999996 889999999999999999999 689999999999999999999999999999999 87641
Q ss_pred cccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcc---ccc-cCccEEE
Q 011197 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAF-GGCPVIV 381 (491)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~---~~~-~~~p~~i 381 (491)
..+|.+.++.++++++++.++.+.+.+++.+++++.|+.+ .++.+++..+|+++.+ +.+ .++|+||
T Consensus 127 ------~~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi 196 (304)
T TIGR00462 127 ------FAPWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFL 196 (304)
T ss_pred ------CCCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEE
Confidence 1344455667777788888888888888888888877643 3566788888887753 223 2479999
Q ss_pred EeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCC
Q 011197 382 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS 453 (491)
Q Consensus 382 ~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~~G~ 453 (491)
+|||..++|||+..++++.+++|||||++|+ ||+||++|+++++++++++++ .|+++..+ +|||+|++||+
T Consensus 197 ~~yP~~~~~~~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~ 275 (304)
T TIGR00462 197 YDYPASQAALARISPDDPRVAERFELYIKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGL 275 (304)
T ss_pred EcCccccCcCccccCCCCCeeEEEEEEECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCC
Confidence 9999999999975555667999999999998 999999999999999988865 68888888 68999999999
Q ss_pred CCccceeccHHHHHHHHcCCCCccccccc
Q 011197 454 VPHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
|||||||||||||+|++||.+|||||++|
T Consensus 276 pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 276 PECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred CCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 99999999999999999999999999998
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=5.7e-69 Score=531.21 Aligned_cols=260 Identities=26% Similarity=0.468 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc--Ccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 225 (491)
+++||.+++++|+||.++||+||+||+|+++++++++++|.+ +|+ +++
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~------------------------------~~~~~g~~ 50 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV------------------------------KYNALGLD 50 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEe------------------------------eecCCCCc
Confidence 578999999999999999999999999999999888899976 233 889
Q ss_pred cccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011197 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDN 304 (491)
Q Consensus 226 ~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~ 304 (491)
+||++|||+|+| ++++|++|||+|+||||+|+. +.+|++||||||||++|.|++|+|+++|+||++ +++.+.+.
T Consensus 51 ~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~-~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~----i~~~~~~~ 125 (269)
T cd00669 51 YYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRH----LAREVLGV 125 (269)
T ss_pred EEeecCHHHHHHHHHhcCCCcEEEEecceeCCCC-CCCcccceeEEEEEEecCCHHHHHHHHHHHHHH----HHHHHhcc
Confidence 999999999997 567899999999999999954 899999999999999999999999999999999 99988776
Q ss_pred CcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeC
Q 011197 305 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 384 (491)
Q Consensus 305 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~ 384 (491)
+..++... ...+..||++|||+||++++. +|+||+||
T Consensus 126 ~~~~~~~~------------~~~~~~~~~rit~~ea~~~~~-------------------------------~p~fi~d~ 162 (269)
T cd00669 126 TAVTYGFE------------LEDFGLPFPRLTYREALERYG-------------------------------QPLFLTDY 162 (269)
T ss_pred cccccccc------------ccccCCCceEeeHHHHHHHhC-------------------------------CceEEECC
Confidence 65444221 012456999999999987531 59999999
Q ss_pred CCCCcccccccCC-CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccce
Q 011197 385 PKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGF 459 (491)
Q Consensus 385 P~~~~pf~~~~~~-~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pp~~G~ 459 (491)
|+..+|||++.++ ++.+++|||||++|+ ||+|||+|+|++++|.+++++++++++ .++|||+|+++|+||||||
T Consensus 163 P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~ 241 (269)
T cd00669 163 PAEMHSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGL 241 (269)
T ss_pred CcccCCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceE
Confidence 9998999986654 457899999999996 999999999999999999999999988 8999999999999999999
Q ss_pred eccHHHHHHHHcCCCCcccccccCCCC
Q 011197 460 GLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 460 glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
|||||||+|++||.+|||||++|||++
T Consensus 242 glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 242 GIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred eeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 999999999999999999999999986
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=2.7e-64 Score=507.28 Aligned_cols=291 Identities=18% Similarity=0.169 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
..+|++|+.+++++|+||.++||+||+||+|+..+..+ ...+|.+....+ ....+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~------------------------~~~~~ 57 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGP------------------------GASQG 57 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccc------------------------cccCC
Confidence 46899999999999999999999999999999866543 345665421110 00127
Q ss_pred cccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302 (491)
Q Consensus 224 ~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~ 302 (491)
+++||++|||++++ ++++|++|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++ ++..
T Consensus 58 ~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~----i~~~-- 130 (306)
T PRK09350 58 KTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ----VLDC-- 130 (306)
T ss_pred cceEEecCHHHHHHHHhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHH----HHhc--
Confidence 88999999999994 888999999999999999999 899999999999999999999999999999999 7742
Q ss_pred hcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhh----hhccccccCcc
Q 011197 303 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER----YLTEEAFGGCP 378 (491)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~----~l~~~~~~~~p 378 (491)
.+|...++.+.++++++.+....+.+++.+++.+.|..- ....+.+++..+++ ++.+.+..+.|
T Consensus 131 ----------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~~ve~~l~~~~p 198 (306)
T PRK09350 131 ----------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSN--IADEEEDRDTLLQLLFTFGVEPNIGKEKP 198 (306)
T ss_pred ----------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCC--cCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 123333455667777777777778878777776665410 01112233333333 33333332469
Q ss_pred EEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHHh
Q 011197 379 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRH 450 (491)
Q Consensus 379 ~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~ 450 (491)
+||+|||..++|||++.++++.+++|||||++|+ ||+|||+|++|++++++++++ .|.++.++ +|||+|++
T Consensus 199 ~fi~~yP~~~~~~a~~~~~~~~~~~rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~ 277 (306)
T PRK09350 199 TFVYHFPASQAALAKISTEDHRVAERFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALE 277 (306)
T ss_pred EEEEcCccccCccccccCCCCCeeEEEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHH
Confidence 9999999999999986666668999999999998 999999999999999999874 67777788 56999999
Q ss_pred cCCCCccceeccHHHHHHHHcCCCCcccc
Q 011197 451 YGSVPHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 451 ~G~pp~~G~glGidRL~m~l~g~~~Irdv 479 (491)
+|+|||||||||||||+|++||.+|||||
T Consensus 278 ~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 278 AGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred cCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 99999999999999999999999999997
No 37
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=9.8e-64 Score=496.64 Aligned_cols=271 Identities=29% Similarity=0.440 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 227 (491)
+++||++++++|+||.++||+||+||+|++++++|+++ |.+... ...+..+|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~---------------------------~~~~~~~~ 52 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSR---------------------------LHPGKFYA 52 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccc---------------------------cCCCceee
Confidence 47899999999999999999999999999999987765 654211 01134456
Q ss_pred cccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011197 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK 306 (491)
Q Consensus 228 L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~ 306 (491)
|++|||+||| ++++|++|||+||||||+|++++.|| +||||+|||++|.|++|+|+++|+||++ ++..+.+.
T Consensus 53 L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~----i~~~~~~~-- 125 (280)
T cd00777 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKY----VFKEVLGV-- 125 (280)
T ss_pred cccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHH----HHHHHhCC--
Confidence 9999999997 67899999999999999999987766 5999999999999999999999999999 88877542
Q ss_pred ccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEe-CC
Q 011197 307 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YP 385 (491)
Q Consensus 307 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~-~P 385 (491)
..+.||+++||.||++.+ +.+ ..|+.++.. .+..+ ..++++++++ ||
T Consensus 126 --------------------~~~~p~~rity~eA~~~~---~~~----~~~~~d~~~-~~~~~----~~~~~~~~~~pf~ 173 (280)
T cd00777 126 --------------------ELTTPFPRMTYAEAMERY---GFK----FLWIVDFPL-FEWDE----EEGRLVSAHHPFT 173 (280)
T ss_pred --------------------CCCCCCceeeHHHHHHHh---CCC----CccccCCcc-cCChh----HHHHHHHHhCCCc
Confidence 124589999999999864 221 235544321 00000 0113344444 44
Q ss_pred CCCc---ccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCC----cccHHHHHHHHhcCCCCccc
Q 011197 386 KEIK---AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAG 458 (491)
Q Consensus 386 ~~~~---pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~----~~~~~~yl~~~~~G~pp~~G 458 (491)
+... |++ +.++++.+++|||||++|+ ||+|||+|+|++++|++++++.|++ ++.++|||+|++||+|||||
T Consensus 174 ~~~~~~~~~~-~~~~~~~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G 251 (280)
T cd00777 174 APKEEDLDLL-EKDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGG 251 (280)
T ss_pred CCCcccchhh-hcCCccCeeEEEEEEeCCE-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCe
Confidence 4322 233 2233336899999999997 9999999999999999999999988 45689999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 459 FGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 459 ~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||||||||+|++||.+|||||++|||+.+
T Consensus 252 ~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 252 IALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999999999999853
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-57 Score=433.24 Aligned_cols=297 Identities=22% Similarity=0.237 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
.....+..|+.|+++||.||.++||+||+||.|+.++. +..-.+|++....+ +. .+
T Consensus 11 ~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~------------------~~----~~- 67 (322)
T COG2269 11 ASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGP------------------GG----AK- 67 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEecc------------------Cc----cc-
Confidence 34456899999999999999999999999999999887 45558898765543 00 11
Q ss_pred cCcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300 (491)
Q Consensus 222 f~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~ 300 (491)
+.++||++|||+|| +|+++|.++|||||+||||++. +++|+|||||||||+++.||+.+|+.+.+|++. +++.
T Consensus 68 -~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~----vl~~ 141 (322)
T COG2269 68 -GKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQL----VLEC 141 (322)
T ss_pred -cceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHH----HHcc
Confidence 68899999999999 6999999999999999999996 899999999999999999999999999999999 8764
Q ss_pred HHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhc----cccccC
Q 011197 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGG 376 (491)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----~~~~~~ 376 (491)
.. .+.+ +.-+.+..++|.+.....-.+..+.+.+.|+.... +.+.+..+.+.++ +.++.+
T Consensus 142 ~~---~E~l---------s~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~----~~~~d~L~~~lf~~~VEP~lg~~ 205 (322)
T COG2269 142 VE---AERL---------SYQEAFLRYLGIDPLSADKTELREAAAKLGLSAAT----DEDWDTLLQLLFVEGVEPNLGKE 205 (322)
T ss_pred CC---ccee---------eHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCC----ccCHHHHHHHHHHhhcCcccCCC
Confidence 31 1122 33345556677666654444444555555554221 2344555555443 344557
Q ss_pred ccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-------CCCccc-HHHHHHH
Q 011197 377 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDS-YWWYLDL 448 (491)
Q Consensus 377 ~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-------g~~~~~-~~~yl~~ 448 (491)
+|+||+|||..++++++..+.|+.+++|||||+.|+ ||+||+-+.+|.++|++|++.. |+...+ .+.||.|
T Consensus 206 rpt~ly~fP~~qaaLA~i~~~D~rVAERFElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~A 284 (322)
T COG2269 206 RPTFLYHFPASQAALAQISTGDPRVAERFELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAA 284 (322)
T ss_pred CceEEEeCcHHHHHhhccCCCCcchhhhhhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 999999999999999998888889999999999999 9999999999999999998642 232222 2789999
Q ss_pred HhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 449 ~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.. ||||+|++||+|||+|+++|..+|.+|++||...
T Consensus 285 la~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 285 LAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred HHh-CCCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 998 9999999999999999999999999999999753
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.85 E-value=9.2e-21 Score=169.09 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=100.2
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCCCcEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~gd~V~V~ 89 (491)
+++|+++... +.|++|+|+|||+++|.+|+++|++|+|++| .+|+|++.+... +..++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4667777643 5789999999999999999999999999996 599999865433 556667 9999999999
Q ss_pred EEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccc---cChhhhccCccccCCChH
Q 011197 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (491)
Q Consensus 90 G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~---~~~~~~r~~~~l~~R~~~ 143 (491)
|++.+++. ..+++||.++++++|++| .++|+..+. .+.+...+||||+||++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99997642 346799999999999999 578887654 346666699999999864
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.81 E-value=2.1e-19 Score=152.87 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=88.6
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCC--ccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~--~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
+|+|+|||+++|.+||++|++|||++| .+|+|++.+ ...++.++. |+.||+|.|+|++.+++...+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTG--IVQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCe--eEEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 389999999999999999999999996 499999865 234566667 99999999999999988777789999999
Q ss_pred EEEEccCCCCCCCCccccChhhhccCccc
Q 011197 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (491)
Q Consensus 109 i~ils~~~~~~P~~~~~~~~~~~r~~~~l 137 (491)
++++|+|. ++|++++. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 69998764 88899999986
No 41
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.79 E-value=1.2e-18 Score=149.35 Aligned_cols=102 Identities=19% Similarity=0.350 Sum_probs=87.0
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (491)
.|.++... ..|++|+|+|||+++|.+|+++|++|||++| .+|+|++.+. ..++.+++ |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREG--IVQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCe--eEEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45566543 5789999999999999999999999999996 4999998653 24666777 9999999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcc
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~ 124 (491)
|++.+++...+++||++++++++++|..++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999987777899999999999999877888643
No 42
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.78 E-value=2.7e-18 Score=147.22 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=82.8
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
+|+|+|||+++|.+|+++|++|||+++ .+|+|++.+. ..|..+. ..|+.||+|.|+|++.+++++ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~-~~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFK-KLLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHH-hcCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999985 6999998653 3344432 139999999999999999874 7999999
Q ss_pred eEEEEccCCCCCCCCccc-cChhhhccCccccC
Q 011197 108 KIVLVGKSDPSYPIQKKR-VSREFLRTKAHLRP 139 (491)
Q Consensus 108 ~i~ils~~~~~~P~~~~~-~~~~~~r~~~~l~~ 139 (491)
+++|+|+|..++|+..+. .+.++.+++|||++
T Consensus 76 ~~~ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999997444443332 24566668899875
No 43
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.71 E-value=1.2e-16 Score=135.50 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.3
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-----cchhhhhhcCCCCCcEEEEEEEEEecCCC-----c
Q 011197 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (491)
Q Consensus 31 ~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-----~~~~~~~~~~L~~gd~V~V~G~v~~~~~~-----~ 99 (491)
+|+|+|||+++|.+| +++|++|||++| .+|+|++.+. ..+..++. |+.||+|.|+|++.++++. .
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999996 5999998653 12344567 9999999999999987652 2
Q ss_pred eeEEEEEeeEEEEccCCCCCCCCc
Q 011197 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (491)
Q Consensus 100 ~~~el~~~~i~ils~~~~~~P~~~ 123 (491)
+++||+++++++|++|..++|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 689999999999999987788764
No 44
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.70 E-value=2e-16 Score=128.74 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=72.7
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEE
Q 011197 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (491)
Q Consensus 32 V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~i 111 (491)
|+|+|||+++|.+|+++|++|||+++.+++|+|++++...++.++. |+.||+|.|+|.+.+++.+.+++||+++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 7999999999999999999999999866799999877555666777 99999999999999998877799999999999
Q ss_pred Ecc
Q 011197 112 VGK 114 (491)
Q Consensus 112 ls~ 114 (491)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 863
No 45
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.68 E-value=3.7e-16 Score=128.39 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.4
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCc----eeEEEE
Q 011197 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (491)
Q Consensus 31 ~V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~----~~~el~ 105 (491)
+|+|+|||+++|+ +|+++|++|||++| ..+|||++++...|+.++. |+.||+|.|+|++.+++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 69999999999997 4699999876556777777 99999999999999988654 789999
Q ss_pred EeeEEEEcc
Q 011197 106 VNKIVLVGK 114 (491)
Q Consensus 106 ~~~i~ils~ 114 (491)
++++++||+
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999974
No 46
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.3e-16 Score=157.94 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Ccc---c
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKP---A 226 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~---~ 226 (491)
-..++..++++|.+.||.|++.|.+.+ +.+..+.+|.|++|||++-.| .|| +.. .
T Consensus 113 l~~~~e~i~~iF~~mGF~~~~gp~IE~-------d~~NFDaLn~P~dHPARdmqD--------------TFy~~~~~~~~ 171 (335)
T COG0016 113 LTQTIEEIEDIFLGMGFTEVEGPEIET-------DFYNFDALNIPQDHPARDMQD--------------TFYLKDDREKL 171 (335)
T ss_pred HHHHHHHHHHHHHHcCceeccCCcccc-------cccchhhhcCCCCCCcccccc--------------eEEEcCCCCce
Confidence 356889999999999999999996655 556668889999999884221 233 211 2
Q ss_pred ccccchh-hHHHHHhcc---CCceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHHHHHHHHHH
Q 011197 227 FLTVSGQ-LNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQLYSCMQVRY 300 (491)
Q Consensus 227 ~L~~Spq-l~lql~~~g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~~~~i~~~ 300 (491)
-|++..- .--+.|... =-|+|.+|+|||+|.. +.+|+|||+|+|.-.... ++.+|+..++++++. ++..
T Consensus 172 lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~----~fg~ 246 (335)
T COG0016 172 LLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKK----FFGE 246 (335)
T ss_pred eecccCcHhhHHHHHhCCCCCceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHH----hcCC
Confidence 2333221 222444443 3589999999999988 699999999999766644 588888888887777 4421
Q ss_pred HHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEE
Q 011197 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVI 380 (491)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~ 380 (491)
- .++ .+.+.++
T Consensus 247 ~-----~~v----------------------------------------------------------RfrpsyF------ 257 (335)
T COG0016 247 D-----VKV----------------------------------------------------------RFRPSYF------ 257 (335)
T ss_pred C-----cce----------------------------------------------------------EeecCCC------
Confidence 0 000 1122344
Q ss_pred EEeCCCCCcccccccCCCCCceEEEEEEeCC---eeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCcc
Q 011197 381 VSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHA 457 (491)
Q Consensus 381 i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G---~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~ 457 (491)
||+.+ +.-.|++++| +=||+|+++-. -+-++..|+++++|.-|
T Consensus 258 ---------PFTEP-------S~Evdv~~~~~~~WlEi~G~Gmv~------P~VL~~~G~~~~~~~Gf------------ 303 (335)
T COG0016 258 ---------PFTEP-------SAEVDVYCPGCGGWLEILGCGMVH------PNVLEAVGIDPEEYSGF------------ 303 (335)
T ss_pred ---------CCCCC-------eEEEEEEEcCCCCEEEEecccccC------HHHHHhcCCCCCcceEE------------
Confidence 77754 3457777773 44999999765 34566778777655322
Q ss_pred ceeccHHHHHHHHcCCCCcccc
Q 011197 458 GFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 458 G~glGidRL~m~l~g~~~Irdv 479 (491)
.||||+|||.|+..|+++||+.
T Consensus 304 AfGlGlERlAMLkygI~DIR~l 325 (335)
T COG0016 304 AFGLGLERLAMLKYGIPDIRDL 325 (335)
T ss_pred EEeecHHHHHHHHhCCcHHHHH
Confidence 4999999999999999999974
No 47
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.66 E-value=3.9e-16 Score=157.17 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc-
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT- 229 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~- 229 (491)
-+.+...||++|...||.|+++|.|++. .+..+.+|.+++|||++..+.. |.+...-|+
T Consensus 110 l~~~~~~Ir~if~~mGF~ev~gpeIes~-------~~NFdaLn~P~dHPaR~~~DTf-------------yI~~~~lLRT 169 (339)
T PRK00488 110 ITQTIEEIEDIFVGMGFEVAEGPEIETD-------YYNFEALNIPKDHPARDMQDTF-------------YIDDGLLLRT 169 (339)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCccccH-------HHHHHHhCCCCCCcccccCceE-------------EEcCCceeec
Confidence 3568899999999999999999999762 2223567777888887533321 112223344
Q ss_pred -cchhhHHHHHhcc-C-CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 230 -VSGQLNAETYATA-L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 230 -~Spql~lql~~~g-~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+||-+. +.|... . -|+|++|+|||++.. +.+|.|+|+|+|.-.... ++.++...++.+++.
T Consensus 170 hTSp~qi-r~L~~~~~Pirif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~ 235 (339)
T PRK00488 170 HTSPVQI-RTMEKQKPPIRIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKA 235 (339)
T ss_pred cCcHHHH-HHHHhcCCCeEEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 444432 444333 2 389999999999987 689999999999977765 588888888888877
No 48
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.65 E-value=7.2e-16 Score=150.68 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S 231 (491)
+++.+.+|++|...||.||.+|.+.+. ....+.++.+++|++++..+.....++. .......-|+++
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~-------~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~------~~~~~~~vLRTh 86 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESE-------FYNFDALNIPQDHPARDMQDTFYISNPY------SAEEDYSVLRTH 86 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEH-------HHHTGGGTSTTTSCGGCGTTSEBSCSSS------BCECSSEEE-SS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEee-------HHHHHhhCcCCCccccccccceeeeccc------cccchhhhhhhh
Confidence 568889999999999999999999762 2224667888888877543322111100 000233445554
Q ss_pred hhhHH-HHHh---ccCCceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011197 232 GQLNA-ETYA---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQLYSCMQVRYILDNC 305 (491)
Q Consensus 232 pql~l-ql~~---~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~~~~i~~~~~~~~ 305 (491)
.--.+ +.|. ..--|+|+||+|||+|.. +.+|+|||+|+|.-.+.. ++.+++..++.|+++ ++. .
T Consensus 87 ts~~~~~~l~~~~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~----lfG----~- 156 (247)
T PF01409_consen 87 TSPGQLRTLNKHRPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKE----LFG----I- 156 (247)
T ss_dssp THHHHHHHHTTTSHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHH----HHT----T-
T ss_pred hhHHHHHHHHHhcCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHH----Hhh----c-
Confidence 33333 4441 123689999999999998 689999999999988876 588888888887777 541 0
Q ss_pred cccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCC
Q 011197 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 385 (491)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P 385 (491)
+++ +. +.+.++
T Consensus 157 --~~~--------------------------------------------~r------------~~ps~f----------- 167 (247)
T PF01409_consen 157 --DVK--------------------------------------------VR------------FRPSYF----------- 167 (247)
T ss_dssp --TEE--------------------------------------------EE------------EEECEE-----------
T ss_pred --ccc--------------------------------------------eE------------eecCCC-----------
Confidence 000 00 111222
Q ss_pred CCCcccccccCCCCCceEEEEEEe------CCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccce
Q 011197 386 KEIKAFYMRQNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 459 (491)
Q Consensus 386 ~~~~pf~~~~~~~~~~~~~fdl~~------~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~ 459 (491)
||+.+ +...|+++ .++ ||+++++-. -+.++..|+| +. -|...|
T Consensus 168 ----PfteP-------s~e~~i~~~~~~~~~wi-Evgg~G~vh------P~Vl~~~gid-~~------------~~~~A~ 216 (247)
T PF01409_consen 168 ----PFTEP-------SREADIYCGVCKGGGWI-EVGGCGMVH------PEVLENWGID-EE------------YPGFAF 216 (247)
T ss_dssp ----TTEEE-------EEEEEEEEECTTTTCEE-EEEEEEEE-------HHHHHHTT---TT------------SEEEEE
T ss_pred ----CcccC-------CeEEEEEEeeccCCCce-EEeeccccc------HhhhhccCcC-cc------------ceEEEe
Confidence 66643 45577777 234 998888654 3445566776 22 255679
Q ss_pred eccHHHHHHHHcCCCCcccc
Q 011197 460 GLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 460 glGidRL~m~l~g~~~Irdv 479 (491)
|||+|||+|+..|.++||+.
T Consensus 217 G~GleRlam~~~gi~diR~~ 236 (247)
T PF01409_consen 217 GLGLERLAMLKYGIPDIRLL 236 (247)
T ss_dssp EEEHHHHHHHHHT-SSGGHH
T ss_pred cCCHHHHHHHHcCCchHHHH
Confidence 99999999999999999974
No 49
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.65 E-value=1.1e-15 Score=124.92 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=70.4
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCCCcEEEEEEEEEecCCC---ceeEEEEE
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~gd~V~V~G~v~~~~~~---~~~~el~~ 106 (491)
+|+|+|||+++|.+|+++|++|||+++. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999964 99999865432 556677 9999999999999999877 77899999
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
+++++|++
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999974
No 50
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.63 E-value=1.4e-15 Score=159.19 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEe-ecceeeccCCCCCCCceeeeecCCCcccccCCCCCC-----------CC------
Q 011197 147 VARVRNALAYATHKFFQENGFIWI-SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA-----------IP------ 208 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV-~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~-----------~~------ 208 (491)
-+.--.+++..+|++|.+.||.|+ +.|.+.+ +.+....++.||+|||++..|. +|
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves-------~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~er 291 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVES-------SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVER 291 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeec-------hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHH
Confidence 344456788999999999999999 4566665 4556678889999999973222 11
Q ss_pred --CCCCCCcCccccccC--------cccccccchhhHH-HHHh----cc--CCceEEEccccccCCCCCCccccccccee
Q 011197 209 --KTKDGLIDWSQDFFE--------KPAFLTVSGQLNA-ETYA----TA--LSNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (491)
Q Consensus 209 --~~~~~~~~~~~~~f~--------~~~~L~~Spql~l-ql~~----~g--~~rvfeI~~~FR~E~~~t~rHl~EFtmlE 271 (491)
.+|+.+. ....-|+ ...-|++..--.. +.|. .+ --|+|.||+|||+|.. +.+|+|||+|+|
T Consensus 292 Vk~~He~G~-~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~i-DatH~~eFhQ~E 369 (492)
T PLN02853 292 VKTVHESGG-YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAV-DRTHLAEFHQVE 369 (492)
T ss_pred HHHHHhcCC-CCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCC-CcccCccceeEE
Confidence 1121110 0011122 2233433222222 2222 11 2389999999999998 699999999999
Q ss_pred eEeccC--CHHHHHHHHHHHHHH
Q 011197 272 PELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 272 ~e~~~~--~~~~lm~~~e~li~~ 292 (491)
.-.... ++.+++.+++++++.
T Consensus 370 G~vvd~~~t~~~L~g~l~~f~~~ 392 (492)
T PLN02853 370 GLVCDRGLTLGDLIGVLEDFFSR 392 (492)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHH
Confidence 888754 588888777766555
No 51
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.63 E-value=2.7e-15 Score=122.98 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=69.6
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc--hhhhhhcCCCCCcEEEEEEEEEecCC---CceeEEEE
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~--~~~~~~~~L~~gd~V~V~G~v~~~~~---~~~~~el~ 105 (491)
+|+|+|||+++|.+|+++|++|||+++ .+|++++.+... ++.++. |+.||+|.|+|.+.+++. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999995 599999876432 455667 999999999999999885 46789999
Q ss_pred EeeEEEEcc
Q 011197 106 VNKIVLVGK 114 (491)
Q Consensus 106 ~~~i~ils~ 114 (491)
++++++|++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
No 52
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.59 E-value=5.8e-15 Score=155.28 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecc-eeeccCCCCCCCceeeeecCCCcccccCCCCCC-------------CC----
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSP-IITASDCEGAGEQFCVTTLIPSSREAAESPVDA-------------IP---- 208 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TP-iL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~-------------~~---- 208 (491)
.+.--.+++..+|++|.+.||.|+++| .+.+ +.+....++.||+|||++..|. +|
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves-------~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~ 299 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVES-------SFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYV 299 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccc-------cchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHH
Confidence 344456788999999999999999877 4444 3455677889999999973221 11
Q ss_pred ----CCCCCCcCccccccC--------cccccccchhhHH-HHHhc--------c---CCceEEEccccccCCCCCCccc
Q 011197 209 ----KTKDGLIDWSQDFFE--------KPAFLTVSGQLNA-ETYAT--------A---LSNVYTFGPTFRAENSNTSRHL 264 (491)
Q Consensus 209 ----~~~~~~~~~~~~~f~--------~~~~L~~Spql~l-ql~~~--------g---~~rvfeI~~~FR~E~~~t~rHl 264 (491)
.+|+.+. ....-|+ ...-|++-.--.. +++.. + --|+|+||+|||+|.. +.+|+
T Consensus 300 ~~Vk~~He~G~-~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~-DatH~ 377 (494)
T PTZ00326 300 ERVKKVHEVGG-YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETL-DATHL 377 (494)
T ss_pred HHHHHHhccCC-cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCC-CCCcC
Confidence 1221110 0011112 2233433222222 33322 2 3489999999999998 69999
Q ss_pred ccccceeeEeccCC--HHHHHHHHHHHHHH
Q 011197 265 AEFWMIEPELAFAD--LKDDMACATAYLQL 292 (491)
Q Consensus 265 ~EFtmlE~e~~~~~--~~~lm~~~e~li~~ 292 (491)
|||+|+|......+ +.+++.++.++++.
T Consensus 378 ~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 378 AEFHQVEGFVIDRNLTLGDLIGTIREFFRR 407 (494)
T ss_pred ceeEEEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 99999999998764 55555554444433
No 53
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.55 E-value=3.9e-14 Score=146.42 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=84.9
Q ss_pred CChHHHHHHHH-----HHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCceeeeecCCCcccccCCCCCCCCCCCCC
Q 011197 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (491)
Q Consensus 140 R~~~~~~~~~~-----Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
|.+..++++.. .+.+.+++|++|...||.||.||+|+.... +..+..-.....
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~--------------------- 248 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELS--------------------- 248 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccch---------------------
Confidence 77889999999 999999999999999999999999985421 000000000000
Q ss_pred CcCccccc--cCcccccc--cchhhHHHHHh-----ccCCceEEEccccccCCCCCCcccccccceeeEeccCC--HHHH
Q 011197 214 LIDWSQDF--FEKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDD 282 (491)
Q Consensus 214 ~~~~~~~~--f~~~~~L~--~Spql~lql~~-----~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~l 282 (491)
... .+...+|+ ..|+++..+.. ..--|+|+||+|||+|.. +.+|++||+|++++....+ +.++
T Consensus 249 -----~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL 322 (417)
T PRK09537 249 -----KQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENL 322 (417)
T ss_pred -----hhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHH
Confidence 011 13345676 56776653321 112479999999999986 6899999999999998653 5555
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
+.+++++++.
T Consensus 323 ~~lleeLL~~ 332 (417)
T PRK09537 323 ENIIDDFLKH 332 (417)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 54
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.50 E-value=8e-13 Score=128.73 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=150.4
Q ss_pred HHHHHHHHHh-----hCCcEEeecceeeccCCC------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 154 LAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 154 i~~~iR~ff~-----~~~F~EV~TPiL~~~~~e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
.|..+++||. +.+.+.|..|+++....+ |.-++-.+ ..+ ++-
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f--~~k-------------------------~~~ 55 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSF--KVK-------------------------ALP 55 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEe--ecC-------------------------CCC
Confidence 3555666664 479999999999986554 11122111 100 000
Q ss_pred CcccccccchhhHHHH-Hh-ccC---CceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHH
Q 011197 223 EKPAFLTVSGQLNAET-YA-TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCM 296 (491)
Q Consensus 223 ~~~~~L~~Spql~lql-~~-~g~---~rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~ 296 (491)
+..+-.-+|---|+++ +. -|| +-+|+=..+.|. |+. +..|.-==-|-|||.....-+--++...+.++.
T Consensus 56 ~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~---- 130 (309)
T cd00645 56 DATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNK---- 130 (309)
T ss_pred CceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHH----
Confidence 2333344555556664 32 245 558888888886 555 789976667778877755333333333333333
Q ss_pred HHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhcccccc
Q 011197 297 QVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFG 375 (491)
Q Consensus 297 i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~~~~ 375 (491)
+...+..... .+ ...+ ..+...+..++.=+|-+|..+. . | +++ .+-|..++..+
T Consensus 131 iy~~ik~te~-~~--~~~y------~~~~~~Lp~~i~FitsqeL~~~---Y------P-----~l~~keRE~~i~ke~-- 185 (309)
T cd00645 131 IYKAIKETEL-EV--NEKY------PQLEPILPEEITFITSQELEDR---Y------P-----DLTPKEREDAICKEH-- 185 (309)
T ss_pred HHHHHHHHHH-HH--HHHc------hhhhhcCCCceEEecHHHHHHH---C------C-----CCCHHHHHHHHHHHh--
Confidence 4433322100 00 0000 0011112212112333333222 1 0 222 23333444433
Q ss_pred CccEEEEeCCCCCcccccccC----CCCCceEEEEEEe------CCeeEeechhhhcccHHHHHHHHHHcC-CCcccHHH
Q 011197 376 GCPVIVSDYPKEIKAFYMRQN----DDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWW 444 (491)
Q Consensus 376 ~~p~~i~~~P~~~~pf~~~~~----~~~~~~~~fdl~~------~G~gEi~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~ 444 (491)
..|||+.--..++-= ++++ +-+.+.-+=|+++ ..+ ||.++++|.++ +.+.++++..| .+...+.|
T Consensus 186 -gaVFi~~IG~~L~~g-~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~ 261 (309)
T cd00645 186 -GAVFIIGIGGKLSDG-KKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF 261 (309)
T ss_pred -CcEEEEeccCcCCCC-CcCCCCCCCCcCccccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH
Confidence 367776643322110 1111 1122344445544 267 99999999999 98999999988 56667776
Q ss_pred HHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011197 445 YLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 445 yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
++++..| +|||+|+|||+|||+|+|+|..+|.+|++-
T Consensus 262 -h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 262 -HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred -HHHHHcCCCCccccccccHHHHHHHHhccchhcceeec
Confidence 9999999 899999999999999999999999999863
No 55
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.49 E-value=2.6e-13 Score=140.04 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc--cCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF--FEK 224 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~~ 224 (491)
-..-.+.+.+.+|++|...||.||.||+|+...- -+.+.... .. . ...+. ++.
T Consensus 238 ~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~---~E~m~~~~-g~--------e-------------I~n~Iyk~ee 292 (453)
T TIGR02367 238 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEY---IERMGIDN-DT--------E-------------LSKQIFRVDK 292 (453)
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCeecchHH---HHhhcCcc-CC--------c-------------ccccceEecC
Confidence 3455688999999999999999999999983210 00000000 00 0 00000 123
Q ss_pred ccccc--cchhhHHHHHh-----ccCCceEEEccccccCCCCCCcccccccceeeEeccCC--HHHHHHHHHH
Q 011197 225 PAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATA 288 (491)
Q Consensus 225 ~~~L~--~Spql~lql~~-----~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~lm~~~e~ 288 (491)
..+|+ ..|+++..+.. ..--|+|+||+|||+|.. +.+|+.||+|++++.+..+ +.|+..++.+
T Consensus 293 ~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e 364 (453)
T TIGR02367 293 NFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKD 364 (453)
T ss_pred ceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 35666 67787753321 113499999999999987 6899999999999998653 6665543333
No 56
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.49 E-value=1.2e-12 Score=128.73 Aligned_cols=272 Identities=16% Similarity=0.099 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHh-----hCCcEEeecceeeccCCCCCCCcee----eeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 149 RVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFC----VTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~-----~~~F~EV~TPiL~~~~~eg~~~~F~----vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
+-....++.++++|. +.+.+.|..|+++....+-+-++-- |+...+
T Consensus 9 ~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k------------------------- 63 (327)
T PRK05425 9 IETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVK------------------------- 63 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeecc-------------------------
Confidence 334455566666664 4799999999999865432111100 111000
Q ss_pred cccCcccccccchhhHHHHHhc--cC---CceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHH
Q 011197 220 DFFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLY 293 (491)
Q Consensus 220 ~~f~~~~~L~~Spql~lql~~~--g~---~rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (491)
+.-+.++-..+|--=|+++... +| +-+|+=..+.|. |+. +..|.-==-|-|||.....-+--++...+.++.
T Consensus 64 ~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~- 141 (327)
T PRK05425 64 DLPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEK- 141 (327)
T ss_pred CCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHH-
Confidence 0002233344555556664433 55 458888888876 555 789977677888887765333333344444444
Q ss_pred HHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhccc
Q 011197 294 SCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEE 372 (491)
Q Consensus 294 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~ 372 (491)
+...+..... .+ ..++ + .+ +.+..++.=||-+|..+. . | +++ ++-|..++..
T Consensus 142 ---Iy~~ik~te~-~~--~~~y-~-----~~-~~Lp~~i~FitsqeL~~~---Y------P-----~l~~keRE~~i~ke 194 (327)
T PRK05425 142 ---IYKAIKATEK-AV--SKKY-P-----LL-PFLPEEITFITSQELEDR---Y------P-----DLTPKEREDAIAKE 194 (327)
T ss_pred ---HHHHHHHHHH-HH--HHhC-c-----cc-ccCCCceEEecHHHHHHH---C------C-----CCCHHHHHHHHHHH
Confidence 4433322100 00 0000 0 00 011111111233333222 1 0 122 2333344443
Q ss_pred cccCccEEEEeCCCCCcccccccC----CCCCceEEEEEEeC------CeeEeechhhhcccHHHHHHHHHHcC-CCccc
Q 011197 373 AFGGCPVIVSDYPKEIKAFYMRQN----DDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDS 441 (491)
Q Consensus 373 ~~~~~p~~i~~~P~~~~pf~~~~~----~~~~~~~~fdl~~~------G~gEi~~G~~r~~~~~~~~~~~~~~g-~~~~~ 441 (491)
+ ..|||+.--..++-= ++++ +.+.+.-+=|+++- .+ ||.++++|.+ ++.+.++++..| .+...
T Consensus 195 ~---gaVFi~~IG~~L~~g-~~Hd~RapDYDDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~ 268 (327)
T PRK05425 195 Y---GAVFLIGIGGKLSDG-KPHDGRAPDYDDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLE 268 (327)
T ss_pred h---CcEEEEeccCcCCCC-CcCCCCCCCCcCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCcccc
Confidence 3 367776543322110 1111 11123344455442 57 9999999999 999999999998 57778
Q ss_pred HHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 442 YWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 442 ~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+.||+++ ..| +|||+|.|||+|||+|+|+|..+|.+|++
T Consensus 269 l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 269 LEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred CHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 8999998 777 89999999999999999999999999986
No 57
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.47 E-value=3.2e-12 Score=125.96 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=61.9
Q ss_pred eEeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 413 GELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 413 gEi~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
.||.++++|. +++.+.++++..| .+...+.||++ +..| +|+|+|+|||+|||+|+|+|..+|.||+.
T Consensus 266 ~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 266 LELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred eecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 5999999999 9999999999998 57778899999 6667 89999999999999999999999999976
No 58
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.43 E-value=3.1e-13 Score=128.30 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCcee-eeecCCCcccccCCCCCCCCCCCCCCcCccccccCccccc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L 228 (491)
|+.+.+.+|++|.+.||.||.||.++.... +..+.... +...+ +.-+...+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~L 55 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVG--------------------------AENEEDLYL 55 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeee--------------------------cCCCCEEEE
Confidence 678999999999999999999999988532 21110000 10111 112455689
Q ss_pred ccchhhHH-HHHhc----cCCceEEEccccccCCCCCC--cccccccceeeEeccCC
Q 011197 229 TVSGQLNA-ETYAT----ALSNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFAD 278 (491)
Q Consensus 229 ~~Spql~l-ql~~~----g~~rvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~ 278 (491)
+.|....+ ++++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+
T Consensus 56 R~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 56 RPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred CCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 99999998 55554 34689999999999975 33 78899999999999764
No 59
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.43 E-value=7.9e-13 Score=136.37 Aligned_cols=102 Identities=19% Similarity=0.321 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhC---CcEEee--cceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Ccc
Q 011197 152 NALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKP 225 (491)
Q Consensus 152 s~i~~~iR~ff~~~---~F~EV~--TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~ 225 (491)
+.++..|+++|.+. ||.+++ .|+.+.. +....++.|++||+++..| .|| +..
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~--------~NFD~L~~P~dHPaR~~~D--------------Tfy~~~~ 128 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTK--------QNFDDVLVPPDHVSRSYND--------------TYYVDAQ 128 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchh--------hhhhhhCCCCCCCccCccc--------------eEEecCC
Confidence 34677888899887 999998 5554432 2236678888888875332 344 455
Q ss_pred cccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEecc
Q 011197 226 AFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (491)
Q Consensus 226 ~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (491)
.-|++..--+. ++|..+-.|++.+|+|||+|.. +.+|.|+|+|+|.-+.+
T Consensus 129 ~lLRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 129 TVLRCHTSAHQAELLRAGHTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred ccccCCCcHHHHHHHHhCCCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 56766665565 6776777899999999999998 69999999999998876
No 60
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.35 E-value=2.9e-11 Score=129.98 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCC----------C-----
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI----------P----- 208 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~----------~----- 208 (491)
...-...+..+++.+|+.|...||.||+||++.+ .++....+..||+|||++..|.. |
T Consensus 228 ~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~-------~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~ 300 (489)
T PRK04172 228 YPGKKHPYREFIDEVRDILVEMGFEEMKGPLVET-------EFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVE 300 (489)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeee-------cCcccccccCCCCCCCCCccceEEECCcccccCcHHHHH
Confidence 3445667889999999999999999999999987 34455677888999998732220 0
Q ss_pred ---CCCCCCcCcccccc--------CcccccccchhhHH-HHHh-ccC--CceEEEccccccCCCCCCcccccccceeeE
Q 011197 209 ---KTKDGLIDWSQDFF--------EKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPE 273 (491)
Q Consensus 209 ---~~~~~~~~~~~~~f--------~~~~~L~~Spql~l-ql~~-~g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e 273 (491)
.+|+.+...+...| ++..-|+.+.--.. ++++ .+. -|+|+||+|||+|.. +..|++||+|+++.
T Consensus 301 ~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~ 379 (489)
T PRK04172 301 RVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGI 379 (489)
T ss_pred HHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEE
Confidence 11110000000111 23345555444343 4444 233 389999999999987 57889999999999
Q ss_pred eccC--CHHHHHHHHHHHHHH
Q 011197 274 LAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 274 ~~~~--~~~~lm~~~e~li~~ 292 (491)
+... ++.+++.++++++..
T Consensus 380 i~G~~~~f~elkg~l~~ll~~ 400 (489)
T PRK04172 380 VMGEDVSFRDLLGILKEFYKR 400 (489)
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 9976 456666666665544
No 61
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.33 E-value=8.1e-11 Score=115.58 Aligned_cols=278 Identities=16% Similarity=0.127 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHhh-----CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 148 ARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~-----~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
++.....|..+++||.. .+.+.|..|+++....+=+-++--+.+.- .+...-.
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV----------------------~f~~k~~ 62 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAV----------------------QVKVKAI 62 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecce----------------------EeecCCC
Confidence 44555667777777754 69999999999986543111110011000 0000000
Q ss_pred -CcccccccchhhHHHHHhc--cC---CceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHH
Q 011197 223 -EKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295 (491)
Q Consensus 223 -~~~~~L~~Spql~lql~~~--g~---~rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (491)
+..+-.-+|---|+++... +| +-+|+=..+-|. |+.-+..|.-==-|-|||.....-+--++...+.++.
T Consensus 63 ~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~--- 139 (330)
T TIGR00669 63 PDAQFEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEA--- 139 (330)
T ss_pred CCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHH---
Confidence 2333344555566675433 55 458997888886 5523789976666777777755333333333333333
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhccccc
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAF 374 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~~~ 374 (491)
+.+.+..... .+ ...+ .+...+. ..|++-...++..... +++ .+-|..++..+
T Consensus 140 -Iy~~ik~te~-~~--~~~y-------~l~~~Lp---~~I~FitsqeL~~~YP-----------~lt~keRE~~i~ke~- 193 (330)
T TIGR00669 140 -IYAAIRATEA-AV--SERF-------GLAPFLP---DQIHFVHSEELVSRYP-----------DLDSKGRERAICKEL- 193 (330)
T ss_pred -HHHHHHHHHH-HH--HHhc-------CccccCC---CceEEecHHHHHHHCC-----------CCCHHHHHHHHHHHh-
Confidence 4333321100 00 0000 0111111 1233332222222210 122 22333344333
Q ss_pred cCccEEEEeCCCCCc---------cccc---ccCCCCCceEEEEEEe------CCeeEeechhhhcccHHHHHHHHHHcC
Q 011197 375 GGCPVIVSDYPKEIK---------AFYM---RQNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK 436 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~---------pf~~---~~~~~~~~~~~fdl~~------~G~gEi~~G~~r~~~~~~~~~~~~~~g 436 (491)
..|||+.--..++ |=|. ...+++...-+=|+++ ..+ ||.+-+.|- +.+.+.++++..|
T Consensus 194 --gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g 269 (330)
T TIGR00669 194 --GAVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTG 269 (330)
T ss_pred --CcEEEEeccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcC
Confidence 3566655332221 1110 0000111113445544 257 999999998 6777788888888
Q ss_pred -CCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 437 -LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 437 -~~~~~~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
.+...+.||+++ ..| +|||+|+|||+|||+|+|+|..+|.+|++
T Consensus 270 ~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 270 DEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred CCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 577889999998 667 89999999999999999999999999976
No 62
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.31 E-value=1.4e-11 Score=128.14 Aligned_cols=114 Identities=15% Similarity=0.224 Sum_probs=75.5
Q ss_pred cCccccCCChHHHHHHHHHHHHHHHHHHHHhhC--------CcEEeec--ceeeccCCCCCCCceeeeecCCCcccccCC
Q 011197 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQEN--------GFIWISS--PIITASDCEGAGEQFCVTTLIPSSREAAES 202 (491)
Q Consensus 133 ~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~--------~F~EV~T--PiL~~~~~eg~~~~F~vt~~~~~~~~~~~~ 202 (491)
++.++...+|.. .+...|.++|.+. ||--++. |+.+.. ..| ..++.|.+|++++
T Consensus 34 r~~~~~~~HPl~--------~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~------~NF--D~Ln~P~dHPaR~ 97 (460)
T TIGR00469 34 ANKHLKEDHPLG--------IIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTM------ENF--DNLGFPADHPGRQ 97 (460)
T ss_pred cCccCCCCCcHH--------HHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchh------hhh--hhcCCCCCCcccC
Confidence 445555555532 3555666777766 7765555 743332 223 5677777887774
Q ss_pred CCCCCCCCCCCCcCcccccc-CcccccccchhhHH-HHHhccCC-------ceEEEccccccCCCCCCcccccccceeeE
Q 011197 203 PVDAIPKTKDGLIDWSQDFF-EKPAFLTVSGQLNA-ETYATALS-------NVYTFGPTFRAENSNTSRHLAEFWMIEPE 273 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~f-~~~~~L~~Spql~l-ql~~~g~~-------rvfeI~~~FR~E~~~t~rHl~EFtmlE~e 273 (491)
..| .|| +...-|++..--+. ++|-.+.+ ++...|.|||++.+ +.+|.|.|+|+|.-
T Consensus 98 ~~D--------------T~Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~EG~ 162 (460)
T TIGR00469 98 KSD--------------CYYINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQADGA 162 (460)
T ss_pred ccc--------------ceEecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeEEE
Confidence 332 344 56666776666665 66666553 38899999999998 68999999999977
Q ss_pred eccC
Q 011197 274 LAFA 277 (491)
Q Consensus 274 ~~~~ 277 (491)
+.+.
T Consensus 163 ~v~~ 166 (460)
T TIGR00469 163 AIRK 166 (460)
T ss_pred EEec
Confidence 7665
No 63
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.29 E-value=1.9e-11 Score=122.86 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Ccccccc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKPAFLT 229 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~L~ 229 (491)
...+...+|++|...||.|+.||.+++..- .| ...+.+.+|++++..+ .++ .....|+
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~-----~f--d~l~~~~~hpar~~~d--------------~~~l~d~~vLR 132 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFW-----NF--DALNIPQDHPARDMQD--------------TFYIKDRLLLR 132 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHH-----HH--HHhCCCCCCcchhhcc--------------ceeecCCccee
Confidence 346777899999999999999999987410 11 1222233444432100 011 1233465
Q ss_pred cchhhHH-HHHhccC---CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 230 VSGQLNA-ETYATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 230 ~Spql~l-ql~~~g~---~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+|----+ +.+.... -|+|+||+|||++.. +.+|+|||+|+++-+... |+.++...+|.++..
T Consensus 133 tsl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~ 200 (294)
T TIGR00468 133 THTTAVQLRTMEENEKPPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKK 200 (294)
T ss_pred cccHHHHHHHHHhcCCCCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5544444 5555544 489999999999876 579999999999987643 677777777776655
No 64
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.93 E-value=8.3e-08 Score=95.07 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCE-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.+.|..+.+.+++.|.+.||.||.||++.....- ...+.|.+...+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~--------------------------- 54 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKG--------------------------- 54 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCC---------------------------
Confidence 3578899999999999999999999999985431 122345442111
Q ss_pred ccCcccccccchhhHH-HHHhc------cCCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 221 FFEKPAFLTVSGQLNA-ETYAT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 221 ~f~~~~~L~~Spql~l-ql~~~------g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--..... ++++. .--|+|++|+|||+|.. ...|.-||+|+++|.-..+
T Consensus 55 --g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 55 --GRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred --CCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 23333332222222 33332 22489999999999987 4668899999999987664
No 65
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.90 E-value=2e-08 Score=79.43 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=61.0
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEE
Q 011197 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 32 V~v~G~V~~~-R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (491)
|+|.|||.++ |..+++.|+.|+|++| .+|+++..+. ....... |+.|++|.|+|.+...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 6679999999999995 5999998721 1223445 9999999999999998664 6999999998
Q ss_pred EE
Q 011197 111 LV 112 (491)
Q Consensus 111 il 112 (491)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 66
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.78 E-value=3.9e-08 Score=102.01 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|++|+|||+|...+.+|+++|+|+|.-.+.. ++.|++..++.|+++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~ 258 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQ 258 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5899999999999643679999999999988866 489999999888887
No 67
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.68 E-value=2.9e-07 Score=96.77 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CC----CCCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.+.+..+...+++.|.++||.||.||++...+. +. ..+.|.+...+
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 69 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG--------------------- 69 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC---------------------
Confidence 346788899999999999999999999999976431 10 01334332111
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-|+.-.-... ++++.. --|+|++|+|||+|... ..|.-||+|+++|....+
T Consensus 70 --------g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 70 --------GRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred --------CCEEeecCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCC-CCcccceEEcCeeeeCCC
Confidence 22223322211111 333221 14899999999999874 456699999999987665
No 68
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.3e-08 Score=101.18 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCC-------------------
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV------------------- 204 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~------------------- 204 (491)
..-.+++|+ .+|++|.+.||.|+.|.-.+.+.-- ....+-.||+|||++.-
T Consensus 211 lHPLmKvR~----eFRqiF~emGFsEMptn~yVEssFW------NFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~ 280 (483)
T KOG2784|consen 211 LHPLMKVRE----EFRQIFFEMGFSEMPTNNYVESSFW------NFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYL 280 (483)
T ss_pred cchHHHHHH----HHHHHHHHccccccccccchhhccc------cchhhcCcccCCccccccceEecChhhcccCCHHHH
Confidence 344677665 5799999999999999888876543 34455567899988721
Q ss_pred CCCCCCCCCCcCccccccCcccc--------c-----ccchhhHHHHHhccC--CceEEEccccccCCCCCCcccccccc
Q 011197 205 DAIPKTKDGLIDWSQDFFEKPAF--------L-----TVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWM 269 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~~--------L-----~~Spql~lql~~~g~--~rvfeI~~~FR~E~~~t~rHl~EFtm 269 (491)
+++..+++.+.-.+ .-|+.++- | ++|....-+|.-.|+ .|+|.|-++||||.. +.+||.||+|
T Consensus 281 ~rVk~vH~~G~ygs-~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQ 358 (483)
T KOG2784|consen 281 ERVKAVHEQGGYGS-IGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQ 358 (483)
T ss_pred HHHHHHHhcCCcCC-cccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhcccc-chHHHHHHhh
Confidence 11122332211011 11222222 2 334433335555666 589999999999999 6999999999
Q ss_pred eeeEeccC--CHHHHHHHHHHHHHH
Q 011197 270 IEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 270 lE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+|.-.+.. ++.++|.+.++++..
T Consensus 359 VEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 359 VEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred hceeeecCCCcHHHHHHHHHHHHhc
Confidence 99999866 589999988887766
No 69
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.60 E-value=2.8e-07 Score=88.94 Aligned_cols=119 Identities=13% Similarity=0.207 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc--cccccc
Q 011197 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK--PAFLTV 230 (491)
Q Consensus 153 ~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~L~~ 230 (491)
++.+.+|++|...||.||.|+.+++....- +.+..... ++.. ... .. -.... -.+|++
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~--~~~~~~~~-----~~~~----~~~----~~-----v~l~NP~~~~LR~ 64 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNF--DALNIPQD-----HPAR----DMQ----DT-----FYINDPARLLLRT 64 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhh--hhcCCCCC-----Cccc----ccC----ce-----EEECCCceEEEec
Confidence 467789999999999999999998762110 11111000 0000 000 00 00011 135665
Q ss_pred chhhHH-HHHhc--cCCceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 231 SGQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 231 Spql~l-ql~~~--g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
|-=-.+ +.++. .--|+||||+|||+++. +.+|+|||+||++.+++. |+.+++..+|.++..
T Consensus 65 sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~ 130 (218)
T cd00496 65 HTSAVQARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKE 130 (218)
T ss_pred cCcHHHHHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 554444 55554 55699999999999876 468899999999999988 899999999998776
No 70
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.37 E-value=1.2e-06 Score=81.37 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHh-hCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
++++|++.+++.+. +.||.||.||+|.+...- |. .+.|.++..+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~--------------------------- 53 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG--------------------------- 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---------------------------
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---------------------------
Confidence 47899999999999 999999999999986431 11 1233332110
Q ss_pred ccCcccccccchhhHH-HHHhcc-------C-CceEEEccccccCC--CCCCcccccccceeeEeccCCHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNA-ETYATA-------L-SNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAY 289 (491)
Q Consensus 221 ~f~~~~~L~~Spql~l-ql~~~g-------~-~rvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~l 289 (491)
+...+|+-+.+... .++... + =|+|++|+|||+|. ..+-..+-||+|.|++....+ ++..+..+++
T Consensus 54 --~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~ 130 (173)
T PF00587_consen 54 --DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEEL 130 (173)
T ss_dssp --TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred --cccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHH
Confidence 13356766666555 333221 2 27999999999993 223567789999999998777 8888888887
Q ss_pred HHH
Q 011197 290 LQL 292 (491)
Q Consensus 290 i~~ 292 (491)
+..
T Consensus 131 ~~~ 133 (173)
T PF00587_consen 131 LEL 133 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 71
>PLN02972 Histidyl-tRNA synthetase
Probab=98.36 E-value=1.6e-05 Score=88.43 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
.+-.-...|..+...+++.|...||.||+||++.... ++...+.|.+...+
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~g----------------------- 392 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQG----------------------- 392 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCC-----------------------
Confidence 4556778899999999999999999999999997532 12222344432111
Q ss_pred ccccccCcccccccchhhHH-HHHhcc---CCceEEEccccccCCCCCCcccccccceeeEeccC-C----HHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D----LKDDMACAT 287 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~----~~~lm~~~e 287 (491)
|+.+-|+----... |+++.. --|.|+||+|||.|... .-+.-||+|+.+|.... + --|++.++-
T Consensus 393 ------Gr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~ 465 (763)
T PLN02972 393 ------GELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKVLT 465 (763)
T ss_pred ------CCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHHHH
Confidence 22222221111112 444322 24788999999999763 34568999999999875 2 245666666
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+.++.
T Consensus 466 E~L~~ 470 (763)
T PLN02972 466 ELLDE 470 (763)
T ss_pred HHHHh
Confidence 65554
No 72
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.6e-06 Score=87.37 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=48.0
Q ss_pred ccc-CcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC
Q 011197 220 DFF-EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (491)
Q Consensus 220 ~~f-~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (491)
.|| +...-|+...-.|. +++..|.+..-..|-+||...+ +++|.|=|.|+|.-..+.
T Consensus 126 tyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 126 TYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred ceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-cccccceeccccceeEEe
Confidence 566 56666777777777 7888899999999999999999 589999999999988764
No 73
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.6e-05 Score=83.66 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCC----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-...+..|...+|+-+...||.||.||++-...- |.. -+.+..+..+
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkg----------------------- 73 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKG----------------------- 73 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCC-----------------------
Confidence 5677889999999999999999999999877432 110 1112111100
Q ss_pred ccccccCcccccccchhhH--H-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~--l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (491)
++.+-|+ |++= . ++++.- --|.|+++||||.|.....|- =||+|+++|....+ --+++
T Consensus 74 ------gr~laLR--pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi 144 (429)
T COG0124 74 ------GRSLALR--PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVI 144 (429)
T ss_pred ------CCEEEec--ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHH
Confidence 2322222 2221 2 333321 248999999999999877776 79999999998774 46777
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
.++-++++.
T Consensus 145 ~l~~~~l~~ 153 (429)
T COG0124 145 ALAVEILEA 153 (429)
T ss_pred HHHHHHHHH
Confidence 777776665
No 74
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.14 E-value=6.6e-06 Score=81.58 Aligned_cols=121 Identities=19% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++.+|++.+++.+.+.||.||.||.|...+. .| ..+.|.++....
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~----------------------- 87 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGL----------------------- 87 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCC-----------------------
Confidence 5778899999999999999999999999988542 11 123454432110
Q ss_pred cccccCcccccccchhhHH-HHHh----cc--C-CceEEEccccccCCCCC--CcccccccceeeEeccCCHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYA----TA--L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~----~g--~-~rvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
.=-+.+++|+-..+-.+ .+.+ +- + =|+|+|++|||+|...+ --=.-||+|.|.+..+.+.++..+..+
T Consensus 88 --~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~ 165 (261)
T cd00778 88 --EELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVL 165 (261)
T ss_pred --cccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHH
Confidence 00012345555544433 2222 21 2 26899999999997631 112349999999999999999988888
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 166 ~~~~~ 170 (261)
T cd00778 166 QILDL 170 (261)
T ss_pred HHHHH
Confidence 87766
No 75
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.05 E-value=4.2e-05 Score=76.02 Aligned_cols=120 Identities=20% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++.+|.+.+++.+.+.||.||.||.|..... . |. .+.|.++..+.
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~----------------------- 87 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGD----------------------- 87 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCC-----------------------
Confidence 4667889999999999999999999999988443 1 11 12343321110
Q ss_pred cccccCcccccccchhhHH-HHHhc------cCC-ceEEEccccccCCCCCCc---ccccccceeeEeccCCHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~------g~~-rvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
.+ -+.+++|+-..+-.+ .+... .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..
T Consensus 88 -~~-~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~ 164 (264)
T cd00772 88 -EE-LEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEF 164 (264)
T ss_pred -Cc-cCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHH
Confidence 00 013445555555433 22222 232 89999999999953 211 235999999998778888888888
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
+.++..
T Consensus 165 ~~~~~~ 170 (264)
T cd00772 165 LNMLSA 170 (264)
T ss_pred HHHHHH
Confidence 777755
No 76
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.03 E-value=2.4e-05 Score=75.80 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
+++..|.+.+++.|.+.||.||.||.|..... .+.. +.|.++..+ + .
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---~ 57 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKG----------------------R---E 57 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCc----------------------c---c
Confidence 56789999999999999999999999998652 1111 222221100 0 0
Q ss_pred ccCcccccccchhhHH-HHHhc------cC-CceEEEccccccCCCCC--CcccccccceeeEeccCCHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYL 290 (491)
Q Consensus 221 ~f~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e~li 290 (491)
--+..++|+-...... ++.+. .+ -|+|++|+|||+|.... -.-.-||+|.|++....+ ++..+..++++
T Consensus 58 ~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~-~~~~~~~~e~~ 136 (235)
T cd00670 58 LRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP-EEAEEERREWL 136 (235)
T ss_pred ccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH-HHHHHHHHHHH
Confidence 0012334444443333 33322 12 37999999999997631 223469999999987544 23333334433
Q ss_pred HH
Q 011197 291 QL 292 (491)
Q Consensus 291 ~~ 292 (491)
..
T Consensus 137 ~~ 138 (235)
T cd00670 137 EL 138 (235)
T ss_pred HH
Confidence 33
No 77
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.96 E-value=4.5e-05 Score=80.57 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CC----CCCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.+.+..+...+++.|.+.||.||.||++...+. +. ..+.|.+....
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 73 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKG--------------------- 73 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCC---------------------
Confidence 346778889999999999999999999999976431 11 12334332110
Q ss_pred cCccccccCcccccccc--hhhHHHHHhc---cCCceEEEccccccCCCCCCcccccccceeeEeccCCH----HHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVS--GQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL----KDDMAC 285 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~S--pql~lql~~~---g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~----~~lm~~ 285 (491)
++.+.|+.- +++. +.++. .--|+|++|+|||+|... ..|.-||+|+++|.-..+- .+++.+
T Consensus 74 --------g~~l~LRpd~T~~~a-r~~~~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~~~~~d~E~i~~ 143 (412)
T PRK00037 74 --------GRSLTLRPEGTAPVV-RAVIEHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSDSPLADAEVIAL 143 (412)
T ss_pred --------CCEEEecCCCcHHHH-HHHHhCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCCCcchhHHHHHH
Confidence 222222221 2222 33322 235899999999999874 4567899999999876542 444554
Q ss_pred HHHHHH
Q 011197 286 ATAYLQ 291 (491)
Q Consensus 286 ~e~li~ 291 (491)
+.++++
T Consensus 144 ~~~~l~ 149 (412)
T PRK00037 144 AADILK 149 (412)
T ss_pred HHHHHH
Confidence 444433
No 78
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.94 E-value=4.1e-05 Score=75.71 Aligned_cols=117 Identities=19% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C-CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC--E-GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e-g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++.+|.+.+++.|.+.||.||.||+|..... . |. .+.|.++...
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~------------------------- 84 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRH------------------------- 84 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCC-------------------------
Confidence 5677889999999999999999999999987332 0 11 1344432110
Q ss_pred ccccCcccccccchhhHH-----HHHhc--cCC-ceEEEccccccC-CCCCC-cccccccceeeEeccCCHHHHHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA-----ETYAT--ALS-NVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-----ql~~~--g~~-rvfeI~~~FR~E-~~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
+.+++|+...+-.+ +.+.+ .+. |+|++++|||+| ..... -=.-||+|.|.+....+-.+..+..++
T Consensus 85 ----~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~ 160 (255)
T cd00779 85 ----GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEK 160 (255)
T ss_pred ----CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHH
Confidence 23445654433222 22222 232 899999999999 32111 023599999999988877677666666
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
++..
T Consensus 161 i~~~ 164 (255)
T cd00779 161 MYQA 164 (255)
T ss_pred HHHH
Confidence 6554
No 79
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.86 E-value=7.4e-05 Score=81.90 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..-. | +.+.|.++...
T Consensus 44 P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~----------------------- 100 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRK----------------------- 100 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCC-----------------------
Confidence 3467789999999999999999999999999984321 1 12455543211
Q ss_pred ccccccCcccccccchh-----hHHHHHhcc--CC-ceEEEccccccC-CCCCC-cccccccceeeEeccCCHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQ-----LNAETYATA--LS-NVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spq-----l~lql~~~g--~~-rvfeI~~~FR~E-~~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+..++|+-..| ++.+.+.+. +. |+|||++|||+| ..+.. -=.-||+|.|.|....+..+.....
T Consensus 101 ------~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~ 174 (568)
T TIGR00409 101 ------GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATY 174 (568)
T ss_pred ------CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHH
Confidence 23445554322 222233332 33 899999999999 32211 0125999999999888766666666
Q ss_pred HHHH
Q 011197 287 TAYL 290 (491)
Q Consensus 287 e~li 290 (491)
+.++
T Consensus 175 ~~~~ 178 (568)
T TIGR00409 175 QKMY 178 (568)
T ss_pred HHHH
Confidence 6554
No 80
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.77 E-value=0.00019 Score=78.91 Aligned_cols=117 Identities=16% Similarity=0.090 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--CC------CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..- ++ +.+.|.++...
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~----------------------- 100 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRH----------------------- 100 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCC-----------------------
Confidence 346778999999999999999999999999996432 11 12455442210
Q ss_pred ccccccCcccccccchhhHH-HHHh----cc--C-CceEEEccccccCC-CCCC-cccccccceeeEeccCCHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYA----TA--L-SNVYTFGPTFRAEN-SNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~----~g--~-~rvfeI~~~FR~E~-~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+++++|+-..+-.. .++. +. + -|+|||++|||.|. .... -=.-||+|.|.|....+-.+.....
T Consensus 101 ------~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~ 174 (565)
T PRK09194 101 ------GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETY 174 (565)
T ss_pred ------CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHH
Confidence 33445554333222 2222 11 2 28999999999993 2111 0135999999999877665555555
Q ss_pred HHHH
Q 011197 287 TAYL 290 (491)
Q Consensus 287 e~li 290 (491)
++++
T Consensus 175 ~~~~ 178 (565)
T PRK09194 175 DAMY 178 (565)
T ss_pred HHHH
Confidence 5555
No 81
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=97.76 E-value=0.002 Score=61.94 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=51.1
Q ss_pred CeeEeechhhhcccHHHHHHHHHHcCCC-cccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 411 RIGELIGGSQREERLEYLEGRLDELKLN-RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 411 G~gEi~~G~~r~~~~~~~~~~~~~~g~~-~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
++ ||.+-+.|. +.+.+.+++.-.|.. ...++|-=..+.--+|.+-|-|||=-||+|+|+..++|-+|..
T Consensus 246 af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 246 AF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred hh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 56 888878776 556666666554432 2234655555555579999999999999999999999999965
No 82
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.70 E-value=0.00018 Score=72.81 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++..|.+.+++.+.+.||.||.||+|.....- |. .+.|.++. +
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~---------------------~----- 82 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE---------------------E----- 82 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc---------------------C-----
Confidence 56778899999999999999999999999875421 11 12333310 0
Q ss_pred ccccCcccccccchhhHH-HHHhc------cCC-ceEEEccccccCCCCCCc---ccccccceeeEeccCCHHHHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-ql~~~------g~~-rvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
+++++|+-...-.. .+.+. .+. |+|++|+|||+|...+.+ =.-||+|.|.+.. ..-++..+.++
T Consensus 83 ----~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~ 157 (298)
T cd00771 83 ----DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIK 157 (298)
T ss_pred ----CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHH
Confidence 12334443333222 33222 222 899999999999763111 1259999999986 33344444444
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 158 e~l~~ 162 (298)
T cd00771 158 GVLDL 162 (298)
T ss_pred HHHHH
Confidence 44443
No 83
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.67 E-value=0.00027 Score=70.84 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
.-.+.+..+.+.+++.|...||-||+||++.....- ...+.|.+....
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~----------------------------- 67 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEK----------------------------- 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCC-----------------------------
Confidence 356678899999999999999999999999864332 112344432110
Q ss_pred CcccccccchhhHH---HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHHHHHHHHHH
Q 011197 223 EKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQL 292 (491)
Q Consensus 223 ~~~~~L~~Spql~l---ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~ 292 (491)
++. |..-|++=. ++++.. --|.|++|+|||.|. .||+|+.+|.-+.+ ..+++.++-+.++.
T Consensus 68 g~~--l~LRpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 68 NHQ--ISLRADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred CCE--EEECCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 222 222233221 333321 238999999999873 59999999998774 55666555554444
No 84
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.67 E-value=0.0002 Score=75.75 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....++..++++.+++.+.+.||.||.||.|..... ++.+ +.|.++
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-------------------------- 223 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-------------------------- 223 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--------------------------
Confidence 457888999999999999999999999999998653 2221 122210
Q ss_pred ccccccCcccccccchhhHHH-HHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~lq-l~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~l 282 (491)
+...||.-..+..+- +...- + =|+|++++|||+|-.. +--=.-||+|.|. ..|.+-++.
T Consensus 224 ------~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s 296 (418)
T TIGR00414 224 ------DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEES 296 (418)
T ss_pred ------CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHH
Confidence 234567766666653 32221 2 3799999999999631 1112349999999 568888888
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+..++++..
T Consensus 297 ~~~~~~~~~~ 306 (418)
T TIGR00414 297 AEELEEMTSD 306 (418)
T ss_pred HHHHHHHHHH
Confidence 8877777766
No 85
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.65 E-value=0.00017 Score=76.51 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-hCCcEEeecceeeccCCC-CCC--CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDCE-GAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~e-g~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
....++..++++.+++.+. +.||.||.||.|...... +.+ .-|. .+
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~------------------------------~~ 216 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFE------------------------------ED 216 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccch------------------------------hh
Confidence 3567788999999999998 999999999999985431 111 1111 01
Q ss_pred cc---CcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCHHHHH
Q 011197 221 FF---EKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 221 ~f---~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
.| +.+.||.-..|..+ -+.... + =|+|++++|||+|-.. +--=.-||+|.|.+ .|..-++..
T Consensus 217 ly~i~~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~ 295 (425)
T PRK05431 217 LYKIEDDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSY 295 (425)
T ss_pred ceEecCCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHH
Confidence 11 34567777777666 343332 1 3799999999999641 10122499999999 678778888
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+..++++..
T Consensus 296 ~~~~~~l~~ 304 (425)
T PRK05431 296 AELEELTAN 304 (425)
T ss_pred HHHHHHHHH
Confidence 888887776
No 86
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.63 E-value=0.00016 Score=71.49 Aligned_cols=98 Identities=27% Similarity=0.286 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC--cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~--F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
-.+++.+|++.+|+.|...| |.||+||+|.+. +.|.+. ..+ .+ ++ +.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~-~g~---------~d------~~---------~~ 79 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTS-IGP---------VE------SG---------GN 79 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheee-ecc---------cC------CC---------Cc
Confidence 57788999999999999885 999999999997 566542 110 00 00 12
Q ss_pred cccccc--chh---hHHHHHhcc---C-CceEEEccccccCCCCCC---cccccccceeeEecc
Q 011197 225 PAFLTV--SGQ---LNAETYATA---L-SNVYTFGPTFRAENSNTS---RHLAEFWMIEPELAF 276 (491)
Q Consensus 225 ~~~L~~--Spq---l~lql~~~g---~-~rvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~~ 276 (491)
..+|+- .|. .+++..... + =|+||||+|||+|.+ .. -=.-||||.|+|.-.
T Consensus 80 ~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~-~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 80 LGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEIS-PRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred ccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccC-cccceeeeccchhhheeeeE
Confidence 233332 221 223433322 2 279999999999975 22 234699999999854
No 87
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.59 E-value=0.00026 Score=78.08 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.-.+++..|.+.+++.+.+.||.||.||+|....- .|.. +.|.++...
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~--------------------- 259 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEID--------------------- 259 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccC---------------------
Confidence 34556788999999999999999999999999998542 1111 233221100
Q ss_pred cCccccccCcccccccc-hhhHHHHHhc------cCC-ceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHH
Q 011197 215 IDWSQDFFEKPAFLTVS-GQLNAETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~S-pql~lql~~~------g~~-rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (491)
++.+.|+-- ...+.++.+. .+. |.|++|+|||+|.+. .+| .-||+|.|++. |.+.+..
T Consensus 260 --------~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~i-f~~~~~~ 329 (575)
T PRK12305 260 --------EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG-VLHGLTRVRGFTQDDAHI-FCTPDQI 329 (575)
T ss_pred --------CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC-CCcCcccccCeEEcceEE-EeCHHHH
Confidence 223333321 1222233222 232 899999999999763 211 25999999995 6676666
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+.+.+++..
T Consensus 330 ~~e~~e~i~l 339 (575)
T PRK12305 330 EDEILKVLDF 339 (575)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 88
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.59 E-value=0.00026 Score=72.14 Aligned_cols=115 Identities=18% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
.-.+.+..+...+++.|.+.||.||+||++..... +...+.|.+...+
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~-------------------------- 59 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL-------------------------- 59 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC--------------------------
Confidence 34677899999999999999999999999987432 1112344332111
Q ss_pred cccCccccccc--chhhHHHHHhc---c---CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHHHHH
Q 011197 220 DFFEKPAFLTV--SGQLNAETYAT---A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACAT 287 (491)
Q Consensus 220 ~~f~~~~~L~~--Spql~lql~~~---g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e 287 (491)
|..+-|+- .++ +.+.++. + --|+|++|+|||.|.. ..-+.-||+|+.+|.-..+ --+++.++-
T Consensus 60 ---g~~l~LRpD~T~~-iaR~~~~~~~~~~~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~ 134 (314)
T TIGR00443 60 ---GRVLGLRPDMTTP-IARAVSTRLRDRPLPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLI 134 (314)
T ss_pred ---CCEEeecCcCcHH-HHHHHHHhcccCCCCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHH
Confidence 12222221 122 2243332 2 2489999999999987 4566789999999987654 134444444
Q ss_pred HHHH
Q 011197 288 AYLQ 291 (491)
Q Consensus 288 ~li~ 291 (491)
+.+.
T Consensus 135 ~~l~ 138 (314)
T TIGR00443 135 EALK 138 (314)
T ss_pred HHHH
Confidence 4443
No 89
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.59 E-value=0.00046 Score=75.94 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
+-.-.+++..|.+.+|+.+.+.||.||.||++....-- |.. +.|.++..
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~----------------------- 252 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL----------------------- 252 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccC-----------------------
Confidence 34567788999999999999999999999999975321 111 12222110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC-----cccccccceeeEeccCCHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~~~~~~l 282 (491)
. ++.++|+--..-.. ++.+.. + -|+|++|+|||+|.. +. |- -||+|.|+|.-.. .++.
T Consensus 253 ----~--~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~~~-~~~~ 323 (563)
T TIGR00418 253 ----D--NREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIFCT-EDQI 323 (563)
T ss_pred ----C--CceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEEcC-HHHH
Confidence 0 24455555444443 443322 2 289999999999955 32 32 5999999998644 4555
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
....++++..
T Consensus 324 ~~e~~~~i~~ 333 (563)
T TIGR00418 324 KEEFKNQFRL 333 (563)
T ss_pred HHHHHHHHHH
Confidence 5554444444
No 90
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.58 E-value=0.00036 Score=73.32 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
..-.+.|..+...+++.|.+.||.||.||++..... +...+.|.+...+.
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~----------------------- 70 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLS----------------------- 70 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCC-----------------------
Confidence 345677899999999999999999999999975321 11123444322100
Q ss_pred cccccCcccccccchhhH--H-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMA 284 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~--l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~ 284 (491)
++.+-| =|++= . ++++.. --|+|++|+|||.|... .-+.-||+|+.+|.-..+ --|++.
T Consensus 71 -----g~~l~L--RpD~T~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~-~gr~ref~Q~g~EiiG~~~~~aDaEvi~ 142 (391)
T PRK12292 71 -----GRTLGL--RPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERG-LGRSREFLQSGVELIGDAGLEADAEVIL 142 (391)
T ss_pred -----CCEEEE--CCCCcHHHHHHHHHhccCCCCCeEEEeeceeeecCCCc-CCCccchhccceEEeCCCCchHHHHHHH
Confidence 122222 22222 1 333322 13899999999999773 445689999999998764 245566
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
++-+.++.
T Consensus 143 l~~~~l~~ 150 (391)
T PRK12292 143 LLLEALKA 150 (391)
T ss_pred HHHHHHHH
Confidence 65555544
No 91
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.57 E-value=0.00031 Score=70.98 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-...+++.+|++.+++.+.+.||.||.||.|..... ++.+ +.|.++
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-------------------------- 102 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-------------------------- 102 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--------------------------
Confidence 346788899999999999999999999999998643 1111 122220
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC------CCCcccccccceeeEeccCCHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~~~~l 282 (491)
+.+++|.-..+..+ .+...- + =|+|++++|||+|.. .+---.-||+|.|.+ .|..-++.
T Consensus 103 ------~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~ 175 (297)
T cd00770 103 ------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEES 175 (297)
T ss_pred ------CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHH
Confidence 23456666666665 343322 2 379999999999965 121234699999997 46655777
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+..++++..
T Consensus 176 ~~~~~~~l~~ 185 (297)
T cd00770 176 WEELEELISN 185 (297)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 92
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.56 E-value=0.00031 Score=75.63 Aligned_cols=121 Identities=18% Similarity=0.095 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
.-.+++..|.+.+++.|.+.||.||.||.|.+..- + + ..+.|.++..+.
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~---------------------- 99 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG---------------------- 99 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC----------------------
Confidence 36788899999999999999999999999987532 1 1 124555543210
Q ss_pred ccccccCcccccccchhhHH-----HHHhcc--C-CceEEEccccccCCCCCC--cccccccceeeEeccCCHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-----ETYATA--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-----ql~~~g--~-~rvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
.=.+.+++|+-..+-.+ +.+.+. + =|+||+++|||+|.. ++ -=.-||+|.|.+..+.+.++..+.+
T Consensus 100 ---~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~ 175 (477)
T PRK08661 100 ---EKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEET 175 (477)
T ss_pred ---CccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHH
Confidence 00134455655553333 222222 2 278999999999976 33 2346999999999999998888888
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
++++..
T Consensus 176 ~~~l~~ 181 (477)
T PRK08661 176 LEMLEI 181 (477)
T ss_pred HHHHHH
Confidence 877765
No 93
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.54 E-value=0.00037 Score=77.86 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF- 222 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f- 222 (491)
-.+++..|.+.+++.+.+.||.||.||+|....- .|..+-|.- .-|+
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~-----------------------------emy~~ 323 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKD-----------------------------NMYFS 323 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhh-----------------------------hcCee
Confidence 4456777999999999999999999999998532 121111110 0011
Q ss_pred ---CcccccccchhhHH-HHHhccC-------CceEEEccccccCCCCC--C--cccccccceeeEeccCCHHHHHHHHH
Q 011197 223 ---EKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 223 ---~~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~t--~--rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
++.++|+--.+-.. ++....+ -|+|++|+|||.|.+.+ . | .-||+|.|.+ .|++-++..+.++
T Consensus 324 d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~ 401 (639)
T PRK12444 324 EVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIK 401 (639)
T ss_pred cCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHH
Confidence 23344655555554 4443322 28999999999997632 1 2 2589999999 7888777777766
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 402 ~~~~~ 406 (639)
T PRK12444 402 SVMAQ 406 (639)
T ss_pred HHHHH
Confidence 66665
No 94
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.53 E-value=0.00043 Score=73.63 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C--C-C-----CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e--g-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-...|..+.+.+++.|...||-||.||++..... . | . .+.|.+...+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~---------------------- 73 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS---------------------- 73 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC----------------------
Confidence 35667899999999999999999999999988532 0 1 1 2344432110
Q ss_pred CccccccCcccccccchhhHH-HHHhc------cC-CceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (491)
++.+.|+-=.-... ++++. .. -|.|++|+|||.|.....|- -||+|+++|.-..+ --+++
T Consensus 74 -------g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi 145 (430)
T CHL00201 74 -------NRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVI 145 (430)
T ss_pred -------CCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHH
Confidence 22222322111112 32221 12 38999999999998755554 69999999997664 12455
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
.++-+.++.
T Consensus 146 ~l~~~~l~~ 154 (430)
T CHL00201 146 HLAMQIFNE 154 (430)
T ss_pred HHHHHHHHH
Confidence 554444443
No 95
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.53 E-value=0.00024 Score=76.33 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CC------CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++..|...+++-+.+.||.||.||.|.+..- +| ..+.|.+++...
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~----------------------- 93 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGL----------------------- 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCC-----------------------
Confidence 4566899999999999999999999999987432 12 224565543221
Q ss_pred cccccCcccccccchhhHH-HHHhc----c--C-CceEEEccccccCCCCCC--cccccccceeeEeccCCHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYAT----A--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~----g--~-~rvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
+=.+.+++|+-..+-.+ .+... - + =|+||+++|||+|...+. -=.-||+|-|.+..|.+.++..+..+
T Consensus 94 --~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~ 171 (472)
T TIGR00408 94 --SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVL 171 (472)
T ss_pred --CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHH
Confidence 00124455555555443 23222 1 2 278999999999976310 12359999999999999888888877
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 172 ~~l~~ 176 (472)
T TIGR00408 172 RALDI 176 (472)
T ss_pred HHHHH
Confidence 77765
No 96
>PLN02530 histidine-tRNA ligase
Probab=97.51 E-value=0.00055 Score=73.94 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------C-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
+-.-.+.|..+...+++.|...||.||.||++..... + -..+.|.+...+
T Consensus 80 lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~----------------------- 136 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKG----------------------- 136 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCC-----------------------
Confidence 3446778999999999999999999999999988432 1 111334332110
Q ss_pred ccccccCcccccccchhhH--H-HHHhcc-----C-CceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~--l-ql~~~g-----~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (491)
++.+-| -|++= . ++++.- + -|.|++|+|||.|..... +.-||+|+.+|.-..+ .-|++
T Consensus 137 ------g~~l~L--RpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi 207 (487)
T PLN02530 137 ------GRRVAL--RPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELL 207 (487)
T ss_pred ------CCEEec--CCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHH
Confidence 232222 23332 2 443332 2 389999999999986434 4579999999997664 34555
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
.++.+.++.
T Consensus 208 ~l~~~~l~~ 216 (487)
T PLN02530 208 AAIVTFFKR 216 (487)
T ss_pred HHHHHHHHH
Confidence 555554443
No 97
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.00062 Score=76.05 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.+-.-.+++..+.+.+++.|...||.||.||++....- .|. .+.|.+....
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~--------------------- 323 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESD--------------------- 323 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCC---------------------
Confidence 34556788999999999999999999999999987542 121 1234332110
Q ss_pred cCccccccCcccccccchhhH-HHHHhc------cC-CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLN-AETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~-lql~~~------g~-~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (491)
++.+.|+--..-. .++.+. .+ =|+|++|+|||+|.+. .+| .-||||.|++. |..-+..
T Consensus 324 --------~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 324 --------GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG-ALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred --------CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC-CCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 2233333211111 233221 22 2899999999999773 211 24999999997 6554444
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+.+.+++..
T Consensus 394 ~~e~~eii~l 403 (638)
T PRK00413 394 EEEVKKVIDL 403 (638)
T ss_pred HHHHHHHHHH
Confidence 4444454444
No 98
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.46 E-value=0.00076 Score=68.43 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
..-.+.+..+.+.+++.|...||.+|+||++..... +...+.|.+...+
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~------------------------- 61 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRS------------------------- 61 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecC-------------------------
Confidence 345778899999999999999999999999987431 2222445442111
Q ss_pred ccccCcccccccchhhHH---HHHhc-----cCCceEEEccccccCCCCCCcccccccceeeEeccCC-HH---HHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACA 286 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l---ql~~~-----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~---~lm~~~ 286 (491)
|..+-| -|.+=. ++++. -.-|+|++|++||.+... ..+.-||+|+.+|.-..+ .. +++.++
T Consensus 62 ----G~~l~L--R~D~T~~iaR~~a~~~~~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l~ 134 (311)
T PF13393_consen 62 ----GRVLAL--RPDLTVPIARYVARNLNLPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKLA 134 (311)
T ss_dssp ----SSEEEE---SSSHHHHHHHHHHCCGSSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHHH
T ss_pred ----CcEecc--CCCCcHHHHHHHHHhcCcCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHHH
Confidence 222222 222222 43333 236799999999999763 456689999999998765 33 556666
Q ss_pred HHHHH
Q 011197 287 TAYLQ 291 (491)
Q Consensus 287 e~li~ 291 (491)
-+++.
T Consensus 135 ~e~l~ 139 (311)
T PF13393_consen 135 DEILD 139 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 99
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.46 E-value=0.00071 Score=71.81 Aligned_cols=117 Identities=18% Similarity=0.261 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C--CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
+-.-...+..+...+++.|...||.||.||+|..... . +. .+.|.++..+
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~--------------------- 72 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG--------------------- 72 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC---------------------
Confidence 3445677889999999999999999999999987531 0 11 1344442211
Q ss_pred cCccccccCcccccccchhhHH---HHHhc--c--CC-ceEEEccccccCCCCCCcccccccceeeEeccCC----HHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA---ETYAT--A--LS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l---ql~~~--g--~~-rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~l 282 (491)
|+. |..-|++=. ++++. . .. |.|++|+|||.|... .-+.-||+|+.+|.-..+ .-|+
T Consensus 73 --------g~~--l~LRpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEv 141 (423)
T PRK12420 73 --------KRD--LALRYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAEL 141 (423)
T ss_pred --------Cce--ecccccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHH
Confidence 222 222233222 33332 1 22 899999999999763 446789999999997653 3666
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
+.++-+.++.
T Consensus 142 i~la~~~l~~ 151 (423)
T PRK12420 142 MSMAFELFRR 151 (423)
T ss_pred HHHHHHHHHH
Confidence 7766665554
No 100
>PLN02908 threonyl-tRNA synthetase
Probab=97.44 E-value=0.0006 Score=76.66 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.+-.-.+++..++..+|+.+.+.||.||.||.|....- . |.- +.|.++. +
T Consensus 316 ~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~---------------------~- 373 (686)
T PLN02908 316 FLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI---------------------E- 373 (686)
T ss_pred EechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEec---------------------C-
Confidence 34567889999999999999999999999999998542 1 111 2232210 0
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC---CCcccccccceeeEeccCCHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
+..++|+--..-.. .+...- + =|+|++|+|||+|.+. +-.=.-||+|.|.+. |+..+++.
T Consensus 374 --------~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~ 444 (686)
T PLN02908 374 --------KQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIK 444 (686)
T ss_pred --------CeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHH
Confidence 23334443333333 222221 1 2799999999999762 211235899999998 88888999
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+++++..
T Consensus 445 ~e~~~~l~~ 453 (686)
T PLN02908 445 DEVKGVLDF 453 (686)
T ss_pred HHHHHHHHH
Confidence 888888876
No 101
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.44 E-value=0.00079 Score=71.80 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.-.+++.+|.+.+|+.+.+.||.||.||.|.+..- .|. .+.|.++...
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~------------------------ 100 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRH------------------------ 100 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCC------------------------
Confidence 35788999999999999999999999999997521 011 1344442110
Q ss_pred cccccCcccccccch-hhHHH----HHhc--cC-CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSG-QLNAE----TYAT--AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 218 ~~~~f~~~~~L~~Sp-ql~lq----l~~~--g~-~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm~~ 285 (491)
+.++.|+... +.+-. .+.+ .+ =|+|||+++||+|.. + +| .-||+|-|+|....+.+++.+.
T Consensus 101 -----~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~ 173 (439)
T PRK12325 101 -----DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHS 173 (439)
T ss_pred -----CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHH
Confidence 2333444321 22222 2222 12 479999999999954 2 32 4699999999988888888776
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
.++++..
T Consensus 174 ~~~~~~~ 180 (439)
T PRK12325 174 YNRMFVA 180 (439)
T ss_pred HHHHHHH
Confidence 6666655
No 102
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.37 E-value=0.00081 Score=73.28 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C-CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E-GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e-g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.-.++|..|...+|+.+.+.||.||.||.|....- . |.- +.|.++. +
T Consensus 163 ~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~---------------------~- 220 (545)
T PRK14799 163 FHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNM---------------------E- 220 (545)
T ss_pred EcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeec---------------------c-
Confidence 34567889999999999999999999999999876432 1 111 1121100 0
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC---cccccccceeeEeccCCHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~~~~~~~lm 283 (491)
+++.+|+--..-.. .+.... + =|+|++|+|||.|.+... .=.-||||.|+.. |++.+++.
T Consensus 221 --------~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~ 291 (545)
T PRK14799 221 --------GDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLR 291 (545)
T ss_pred --------CceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHH
Confidence 23334443333333 333222 2 279999999999987320 2335999999998 88888887
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+.+++..
T Consensus 292 ~E~~~~l~~ 300 (545)
T PRK14799 292 EEIKMLISK 300 (545)
T ss_pred HHHHHHHHH
Confidence 888777766
No 103
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.31 E-value=0.0016 Score=68.39 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
.-.+.+..+.+.+++.|...||.||+||++..... .+ ....|.+.....
T Consensus 19 ~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~------------------------ 74 (392)
T PRK12421 19 EEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLS------------------------ 74 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCC------------------------
Confidence 45677889999999999999999999999986432 11 113343322100
Q ss_pred ccccCcccccccchhhHH---HHHhc-----cCCceEEEccccccCCCCCCcccccccceeeEeccCC-H---HHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACA 286 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l---ql~~~-----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~ 286 (491)
++. |+.=|++=. ++++. .--|.|++|+|||.+.....| .-||+|+.+|.-+.+ . -|++.++
T Consensus 75 ----g~~--l~LRpD~T~~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~ 147 (392)
T PRK12421 75 ----GRL--MGVRADITPQVARIDAHLLNREGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLM 147 (392)
T ss_pred ----CcE--EEECCcCCHHHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHH
Confidence 111 111222211 22221 135899999999998764344 379999999997764 2 3677777
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
-+.++.
T Consensus 148 ~e~l~~ 153 (392)
T PRK12421 148 LGLLRN 153 (392)
T ss_pred HHHHHH
Confidence 776655
No 104
>PLN02837 threonine-tRNA ligase
Probab=97.24 E-value=0.0012 Score=73.24 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++.++++.+++...++||.||.||.|....-- +.+ +.|.+....
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~---------------------- 300 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE---------------------- 300 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC----------------------
Confidence 45678899999999999999999999999999985431 111 222210000
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (491)
+....|..+.+-.. .+...- + =|++|+++|||+|.+ +.+ =.-||+|.|.+. |+..++..
T Consensus 301 -------~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~ 371 (614)
T PLN02837 301 -------DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIK 371 (614)
T ss_pred -------CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHH
Confidence 11112222222221 121111 2 378999999999975 221 234899999996 99988888
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+++++..
T Consensus 372 ~e~~~~l~~ 380 (614)
T PLN02837 372 DEIRGVLDL 380 (614)
T ss_pred HHHHHHHHH
Confidence 888888776
No 105
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.23 E-value=0.0017 Score=71.76 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeecc---CCCCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS---DCEGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~---~~eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
+-.-.+++..|.+.+++.+.+.||.+|.||.+... ...|.. +.|.++..
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~----------------------- 279 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD----------------------- 279 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC-----------------------
Confidence 34678899999999999999999999999999543 212222 33433110
Q ss_pred CccccccCcccccccchhhHHH-----HHhcc--C-CceEEEcc-ccccCCCCC---CcccccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNAE-----TYATA--L-SNVYTFGP-TFRAENSNT---SRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~lq-----l~~~g--~-~rvfeI~~-~FR~E~~~t---~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
+.+++|+-..+..+= .+.+. + =|+||+++ |||+|.+.. -.=.-||||-|.+.--.+.++.+
T Consensus 280 -------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~ 352 (613)
T PRK03991 280 -------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAM 352 (613)
T ss_pred -------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHH
Confidence 123344433333221 11111 2 27899999 999997521 11345899999998666689999
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+..++++..
T Consensus 353 ~e~~~~l~~ 361 (613)
T PRK03991 353 EEFEKQYEM 361 (613)
T ss_pred HHHHHHHHH
Confidence 999888877
No 106
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.05 E-value=0.0017 Score=69.61 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=36.2
Q ss_pred ceEEEccccccCCCCCCccc----ccccceeeEeccCCHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (491)
|+.|+|+|||+|-+ + +|- -||||.|.+ .|++-+++.+.+..++..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~ 236 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIEL 236 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHH
Confidence 79999999999976 4 443 799999997 788887777766666655
No 107
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.85 E-value=0.007 Score=63.16 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCC------CC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
..+.+.+++.|...||.||+||++..... +. ..+.|.+...+ ++
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~-----------------------------G~ 58 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN-----------------------------GE 58 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC-----------------------------CC
Confidence 47889999999999999999999987532 11 11244432211 12
Q ss_pred ccccccchhhHH---HHHhc----cCCceEEEccccccCCCCCCcccccccceeeEeccC-C----HHHHHHHHHHHHHH
Q 011197 225 PAFLTVSGQLNA---ETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D----LKDDMACATAYLQL 292 (491)
Q Consensus 225 ~~~L~~Spql~l---ql~~~----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~----~~~lm~~~e~li~~ 292 (491)
.+-| =|++=. ++.+. .--|+|++|+|||.|.. ..-||+|+.+|.-.. + --|++.++-+.++.
T Consensus 59 ~l~L--RpD~T~piaR~~~~~~~~~p~R~~Y~g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 59 ELCL--RPDFTIPVCRRHIATAGGEPARYAYLGEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred EEee--CCCCcHHHHHHHHHcCCCCCeEEEEEccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 1112 222211 22222 12489999999999822 246999999999874 3 34777777776655
No 108
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.73 E-value=0.024 Score=44.90 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.9
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEE
Q 011197 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 32 V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (491)
+++.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++... ..|..|+.|.|+|.+...+.. +++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 678999999985 45599999999985 5999888753 33322 249999999999999965421 35788887764
No 109
>PLN02678 seryl-tRNA synthetase
Probab=96.65 E-value=0.0042 Score=66.00 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC--CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
...+++..+++.+++++.++||.||.||.|..... ++.+ .-|. +.+....+.
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~----------------e~my~i~~~--------- 226 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFD----------------EELYKVTGE--------- 226 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccch----------------hcCceecCC---------
Confidence 46889999999999999999999999999988543 2222 1111 000000000
Q ss_pred Ccccccccchhh-----HH-HHH-hccC-CceEEEccccccCCCC---CCc---ccccccceeeEeccCCHHH--HHHHH
Q 011197 223 EKPAFLTVSGQL-----NA-ETY-ATAL-SNVYTFGPTFRAENSN---TSR---HLAEFWMIEPELAFADLKD--DMACA 286 (491)
Q Consensus 223 ~~~~~L~~Spql-----~l-ql~-~~g~-~rvfeI~~~FR~E~~~---t~r---Hl~EFtmlE~e~~~~~~~~--lm~~~ 286 (491)
+...||.-..|. |. +.+ -..+ =|++++++|||+|-+. +.+ =.-+|+++|.+ +|..-++ ..+..
T Consensus 227 ~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~ 305 (448)
T PLN02678 227 GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMH 305 (448)
T ss_pred CCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHH
Confidence 112333332111 11 111 1112 3799999999999751 111 12389999994 4554444 66666
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
|+++..
T Consensus 306 e~~l~~ 311 (448)
T PLN02678 306 EEMLKN 311 (448)
T ss_pred HHHHHH
Confidence 666665
No 110
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.55 E-value=0.022 Score=45.10 Aligned_cols=73 Identities=15% Similarity=0.321 Sum_probs=53.7
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEE
Q 011197 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (491)
Q Consensus 32 V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~i 111 (491)
|.|.|-|.+.+..++=.|+.|+|+.+ .|.|++-+... ...... +..||-|.|.|.+.- + .+.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a--~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~--~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETG--TVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-R--DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCE--EEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-C--CeEEEEEEeeEEE
Confidence 46889888764454457889999874 59998875432 122234 899999999999875 3 3579999999987
Q ss_pred E
Q 011197 112 V 112 (491)
Q Consensus 112 l 112 (491)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 111
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.52 E-value=0.04 Score=45.57 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=55.9
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch--hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 32 V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~--~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
|++.|+|.++...++-.=+.|.|+|| +|.+.+....+.. ..... +..|++|.|.|.+..-+. ...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG--~I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~g---~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTG--TIEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQG---KKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCC--cEEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccCC---eeEEEEEEE
Confidence 78999999998864444457999997 4999887654321 12345 999999999999977653 477787777
Q ss_pred EEEcc
Q 011197 110 VLVGK 114 (491)
Q Consensus 110 ~ils~ 114 (491)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 76654
No 112
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.011 Score=63.47 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-------CCCC-CceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAG-EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-------eg~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
--++++.+|.+.+|+.|++-|..||--|+|+++.- ++-+ ++|.+++.+
T Consensus 45 ~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg------------------------ 100 (500)
T COG0442 45 LGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG------------------------ 100 (500)
T ss_pred cHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC------------------------
Confidence 36889999999999999999999999999999432 2222 566665332
Q ss_pred cccccCcccccccchhhHH-HHHh---cc---C-CceEEEccccccCCCC--CCcccccccceeeEeccCCHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYA---TA---L-SNVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~---~g---~-~rvfeI~~~FR~E~~~--t~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
++++.|+-..|=-. -++. .. + =++|||...||+|--. .---.-||+|=|.|..+.|.+++....+
T Consensus 101 -----~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~ 175 (500)
T COG0442 101 -----DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYE 175 (500)
T ss_pred -----CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHH
Confidence 34444554444332 2222 11 2 3799999999999421 1113479999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011197 288 AYLQLYSCMQ 297 (491)
Q Consensus 288 ~li~~~~~~i 297 (491)
+++..|....
T Consensus 176 ~~~~~Y~~if 185 (500)
T COG0442 176 KMLDAYSRIF 185 (500)
T ss_pred HHHHHHHHHH
Confidence 9888744433
No 113
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.23 E-value=0.041 Score=54.93 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--CCCC----Ccee-eeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGAG----EQFC-VTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg~~----~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
++..+..+..+.+.+++.|.+.||-||+||++-..+. ..+. ..|. +... +
T Consensus 3 ~~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~-------------------~---- 59 (272)
T PRK12294 3 NSEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQH-------------------E---- 59 (272)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecC-------------------C----
Confidence 3456677888999999999999999999999965433 1110 1110 1000 0
Q ss_pred ccccccCccccccc--chhhHHHHHhc---cCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHH
Q 011197 217 WSQDFFEKPAFLTV--SGQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 217 ~~~~~f~~~~~L~~--Spql~lql~~~---g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~l 282 (491)
|+.+-|+- .|+.. ++++. +..|.|.+|++||++. +|+|+-+|.-..+.+..
T Consensus 60 ------Gr~laLRpD~T~~iA-R~~a~~~~~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG~~~~a~ 115 (272)
T PRK12294 60 ------HQIYALRNDFTDQLL-RYYSMYPTAATKVAYAGLIIRNNE--------AAVQVGIENYAPSLANV 115 (272)
T ss_pred ------CCEEEEcCCCCHHHH-HHHHhcCCCCceEEEeccEeccCC--------CcceeceEEECCCchhH
Confidence 22222221 12222 33332 4459999999999873 48999999887543333
No 114
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.07 E-value=0.049 Score=45.80 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=59.1
Q ss_pred CcEEEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
-+.|+|.|=|.+.+. .++-+|++|.|+. .+|+|++-.... ..+....++.|+-|.|.|.+.--+.. |.+.+.|.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~~--~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSRA--RRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHHH--hhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 478999999999988 5778999999987 579999986531 12220128999999999999876543 46888888
Q ss_pred eEE
Q 011197 108 KIV 110 (491)
Q Consensus 108 ~i~ 110 (491)
+++
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
No 115
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=95.94 E-value=0.088 Score=43.65 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=49.7
Q ss_pred EEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-------------------hhhhhcCCCCCcEEEEEEEEEe
Q 011197 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-------------------DQVKSGLITTGASIWIQGNVVP 94 (491)
Q Consensus 34 v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-------------------~~~~~~~L~~gd~V~V~G~v~~ 94 (491)
|.|+|.+++....-.-+.|.|+||. |-|++......- +.... +..|++|.|.|.+..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 6799999987655455679999974 999887543200 12344 999999999999987
Q ss_pred cCCCceeEEEEEeeEE
Q 011197 95 SQGSKQKVELKVNKIV 110 (491)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (491)
=+. ...|.++.+.
T Consensus 78 frg---~~ql~i~~~~ 90 (92)
T cd04483 78 YRG---EREINASVVY 90 (92)
T ss_pred cCC---eeEEEEEEEE
Confidence 654 3566666554
No 116
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.026 Score=59.30 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc---
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--- 222 (491)
+.++--.+++.+=++..++||.|+.+|.|+..... |.+.. + . ++.+.|
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgql-p-k--------------------------f~e~~y~v~ 224 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQL-P-K--------------------------FEEDLYKVE 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCC-C-C--------------------------CcccceEec
Confidence 44444566666777777899999999999997654 32221 0 0 001222
Q ss_pred CcccccccchhhHH-HHHh------ccC-CceEEEccccccCCCCC---Cc---ccccccceeeEeccCCHHHHHHHHHH
Q 011197 223 EKPAFLTVSGQLNA-ETYA------TAL-SNVYTFGPTFRAENSNT---SR---HLAEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 223 ~~~~~L~~Spql~l-ql~~------~g~-~rvfeI~~~FR~E~~~t---~r---Hl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
+..+||.-..|.-+ .+.. ..+ -+++-.+||||.|-.-. .| -..+|.++|.- .|..-++-...-|+
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v-~~~~Pe~S~~~~E~ 303 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELV-VITKPEESEEELEE 303 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEE-EEeCcchhHHHHHH
Confidence 22467777766655 3322 123 35777999999995411 11 12389999984 46777777777777
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
|+..
T Consensus 304 m~~~ 307 (429)
T COG0172 304 MLGN 307 (429)
T ss_pred HHHH
Confidence 7766
No 117
>PLN02320 seryl-tRNA synthetase
Probab=95.64 E-value=0.041 Score=59.19 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
..++...+++.++++..++||.||.||.|..... ++.+. +. ...+ ..+.... +..
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~-~p-~~e~-----------~~~y~ie-----------~ed 287 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGF-QP-RGDN-----------TQVYSID-----------GSD 287 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCC-Cc-cccc-----------CceeEEC-----------CCc
Confidence 4446678999999999999999999999998654 23231 00 0000 0000000 223
Q ss_pred cccccchh-----hHH-HHHh-ccC-CceEEEccccccCCCCCC------cccccccceeeEeccCCHHHHHHHHHHHHH
Q 011197 226 AFLTVSGQ-----LNA-ETYA-TAL-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMACATAYLQ 291 (491)
Q Consensus 226 ~~L~~Spq-----l~l-ql~~-~g~-~rvfeI~~~FR~E~~~t~------rHl~EFtmlE~e~~~~~~~~lm~~~e~li~ 291 (491)
.||.-..| +|+ +.+. ..+ =|+.+.++|||.|-+... --.-+|++.|... |..-++..+..++++.
T Consensus 288 ~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~ 366 (502)
T PLN02320 288 QCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQ 366 (502)
T ss_pred eEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHH
Confidence 44532222 333 3221 123 479999999999955111 1123899999965 6788888888888877
Q ss_pred H
Q 011197 292 L 292 (491)
Q Consensus 292 ~ 292 (491)
.
T Consensus 367 ~ 367 (502)
T PLN02320 367 I 367 (502)
T ss_pred H
Confidence 6
No 118
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=95.64 E-value=0.059 Score=57.78 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHH-hhCCcEEeecceeeccCC---CCCCC-----ceeeeecCC-Cc-ccc-cCC--CCCCCCCCCC
Q 011197 147 VARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAGE-----QFCVTTLIP-SS-REA-AES--PVDAIPKTKD 212 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff-~~~~F~EV~TPiL~~~~~---eg~~~-----~F~vt~~~~-~~-~~~-~~~--~~~~~~~~~~ 212 (491)
..++...+.+.+.+.+ .+.||.||.+|.|.+... +|.-+ .|.|++..- +. -+. +.. ....+|..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~-- 299 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPID-- 299 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccc--
Confidence 5567777888887655 556999999999998553 22222 233432210 00 000 000 00000000
Q ss_pred CCcCccccccCcccccccchhhHH-HHHhcc------C-CceEEE-ccccccCCC--CCCcccccccceeeEeccCCHHH
Q 011197 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTF-GPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (491)
Q Consensus 213 ~~~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI-~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~ 281 (491)
. ++...=..+++|+-+.+..+ .+++.- + -|+|+. ++|||.|.. ++-.=.-||+|.|.-. +.+.++
T Consensus 300 -~--L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEe 375 (520)
T TIGR00415 300 -K--LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEE 375 (520)
T ss_pred -c--ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHH
Confidence 0 00000012456888887776 444322 2 368994 489999974 2222345999999988 889999
Q ss_pred HHHHHHHHHHH
Q 011197 282 DMACATAYLQL 292 (491)
Q Consensus 282 lm~~~e~li~~ 292 (491)
..+..++++..
T Consensus 376 a~e~~e~mle~ 386 (520)
T TIGR00415 376 TEEIRDKTLEL 386 (520)
T ss_pred HHHHHHHHHHH
Confidence 98888888866
No 119
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.43 E-value=0.022 Score=61.58 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHH-HhhCCcEEeecceeeccCC---CCCC-----CceeeeecCC-CcccccC----CCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKF-FQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIP-SSREAAE----SPVDAIPKT 210 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~f-f~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~-~~~~~~~----~~~~~~~~~ 210 (491)
....++...+.+.+++. ..+.||.||.||.|.+... .|.- +.|.|+.... +..+... .+...++-.
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 34677788899999877 4667999999999998543 1222 2333422110 0000000 000000000
Q ss_pred CCCCcCccccccCccc-ccccchhhHH-HHHh----ccCC---ceEE-EccccccCCC--CCCcccccccceeeEeccCC
Q 011197 211 KDGLIDWSQDFFEKPA-FLTVSGQLNA-ETYA----TALS---NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 211 ~~~~~~~~~~~f~~~~-~L~~Spql~l-ql~~----~g~~---rvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~ 278 (491)
++ ......+. .|+-+...+. -+.. +.-+ |+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++
T Consensus 300 -----~~-~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t 372 (517)
T PRK00960 300 -----KL-KEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT 372 (517)
T ss_pred -----cc-ccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC
Confidence 00 00001111 2222222222 1222 2112 7899 5699999952 222223599999998 7889
Q ss_pred HHHHHHHHHHHHHH
Q 011197 279 LKDDMACATAYLQL 292 (491)
Q Consensus 279 ~~~lm~~~e~li~~ 292 (491)
.+++.+..++++.+
T Consensus 373 pEqs~ee~e~ll~~ 386 (517)
T PRK00960 373 PEQVEEIRDELLKY 386 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998855
No 120
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=95.33 E-value=0.11 Score=51.43 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=55.4
Q ss_pred CCcEEEEEEEEeeeecC----CCeEEEEEEcCCCccceEEEEeCCccc-h-hhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 28 VGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG-Y-DQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
.=+.|+|.|.|..+... .+.+|+.|-|+||...|.|++..+... . -.+.. + .|++|.|+|++. .+.
T Consensus 65 PI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~~ 136 (256)
T PF10451_consen 65 PIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RNE 136 (256)
T ss_dssp EE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SSS
T ss_pred ccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cCc
Confidence 34679999999999754 678899999999832699998864210 0 11334 6 999999999999 235
Q ss_pred EEEEEeeEEEEcc
Q 011197 102 VELKVNKIVLVGK 114 (491)
Q Consensus 102 ~el~~~~i~ils~ 114 (491)
.+|.++.+.++..
T Consensus 137 ~ql~ve~i~~~~~ 149 (256)
T PF10451_consen 137 RQLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEEETS
T ss_pred EEEEEEEEEccCC
Confidence 7899999987743
No 121
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.09 E-value=0.2 Score=41.39 Aligned_cols=73 Identities=21% Similarity=0.429 Sum_probs=52.6
Q ss_pred EEEEEEeeeec--CCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 33 ~v~G~V~~~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
+|.|.|.+.+. .+.=.|+.|.|.++ .|.+++-+..-.+ ..... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998854 44457779999874 5998876543111 12235 99999999999986653 6888888
Q ss_pred EEEccC
Q 011197 110 VLVGKS 115 (491)
Q Consensus 110 ~ils~~ 115 (491)
++++-.
T Consensus 72 ~~~glg 77 (91)
T cd04482 72 RVIRLA 77 (91)
T ss_pred EECCCc
Confidence 887654
No 122
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=94.85 E-value=0.053 Score=58.12 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=55.8
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|++|+|.|-|..++.-++-+-+.|+|++|. +++-.-.. .+...-.. +..||+|.|.|.|...... +.|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 68999999999999998644455589999975 77744321 11112235 9999999999999887653 55555
Q ss_pred eeEEEEc
Q 011197 107 NKIVLVG 113 (491)
Q Consensus 107 ~~i~ils 113 (491)
..++.|.
T Consensus 283 ~~me~L~ 289 (715)
T COG1107 283 EAMEKLT 289 (715)
T ss_pred hhhHHhh
Confidence 5555443
No 123
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.52 E-value=0.24 Score=41.93 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=52.2
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (491)
.+++++++.. ..++.|+|.|.|.+.-..- -| .++|.+| .|+|-++.+. |. -.. ++.++-|.|.|
T Consensus 22 ~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d--~Y-~F~D~TG--~I~VeId~~~--w~-g~~--vt~~~~Vri~G 85 (103)
T PF04076_consen 22 VTTVAQAKNA------KDDTPVTLEGNIVKQLGDD--KY-LFRDATG--EIEVEIDDDV--WR-GQT--VTPDDKVRISG 85 (103)
T ss_dssp ---HHHHTTS-------SSEEEEEEEEEEEEEETT--EE-EEEETTE--EEEEE--GGG--ST-T------TTSEEEEEE
T ss_pred eEeHHHHhhC------cCCCeEEEEEEEEEEecCC--EE-EEECCCC--cEEEEEChhh--cC-Ccc--cCCCCEEEEEE
Confidence 3567777653 5788999999987754432 23 5799996 5898887653 11 124 89999999999
Q ss_pred EEEecCCCceeEEEEEeeEE
Q 011197 91 NVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ 110 (491)
.+.+.-. ..+|.|.+|+
T Consensus 86 eVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 86 EVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEETT---EEEEEEEEEE
T ss_pred EEeCCCC---ceEEEEEEEE
Confidence 9997643 4788887774
No 124
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.24 Score=50.47 Aligned_cols=125 Identities=22% Similarity=0.170 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-------CC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
--+|.-.++.+.++.-|+.-|=.+|.-|+|++..- ++ +.++|.+...+
T Consensus 50 lg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~------------------------ 105 (457)
T KOG2324|consen 50 LGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK------------------------ 105 (457)
T ss_pred chHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC------------------------
Confidence 35777889999999999999999999999998432 11 33555542211
Q ss_pred cccccCcccccccchhhHH-HHHhccCC--------ceEEEccccccCCCCCC---cccccccceeeEeccCCHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYATALS--------NVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~g~~--------rvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~~~~~~~lm~~ 285 (491)
++...|+..-|=-- .+|+.-.. +|||||+=||+|-- .+ ----||.|=|.|.=..|-++-| .
T Consensus 106 -----gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElr-pRfGLlRgREFlMKDmYsFd~~~etA~-q 178 (457)
T KOG2324|consen 106 -----GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELR-PRFGLLRGREFLMKDMYSFDSDEETAQ-Q 178 (457)
T ss_pred -----CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccC-ccccchhhHHHHHhhhhcccCCHHHHH-H
Confidence 23333443333333 45555443 79999999999931 11 1225999999997333444444 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 011197 286 ATAYLQLYSCMQVRYI 301 (491)
Q Consensus 286 ~e~li~~~~~~i~~~~ 301 (491)
+-.++...-|++++.+
T Consensus 179 Ty~~v~~aY~~iFkqL 194 (457)
T KOG2324|consen 179 TYQLVDQAYDRIFKQL 194 (457)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5555655344466554
No 125
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=94.25 E-value=0.55 Score=35.48 Aligned_cols=69 Identities=17% Similarity=0.395 Sum_probs=49.7
Q ss_pred EEEEEEeeeecC---CCeEEEEEEcCCCccceEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 33 VVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 33 ~v~G~V~~~R~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
++.|.|.+++.. +..+++.|.|+++ +.+.+++-.+. ++.. .. +..|+.|.|+|.+.... +...+.+.+
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~-~~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTG-GTIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCC-CEEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 368889888764 3789999999983 25899887653 2222 34 99999999999997653 246666654
Q ss_pred E
Q 011197 109 I 109 (491)
Q Consensus 109 i 109 (491)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 4
No 126
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.17 E-value=0.27 Score=54.11 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCC--CCC---C--CceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDC--EGA---G--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg~---~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
..++.+.+|++|...||.|+-|..+++..- ... . +. +.-.|+- + .
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~--i~l~NPl----------------------s----~ 412 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY--VEVLNPI----------------------S----E 412 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCe--EEEcCCC----------------------c----c
Confidence 456677899999999999999999987621 100 0 11 2122220 0 1
Q ss_pred cccccccchhhHH-HHHh---ccC--CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNA-ETYA---TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 224 ~~~~L~~Spql~l-ql~~---~g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
.-.+|++|-=--+ +.+. .+. -|+||||+||+.+.. +..|..|++++-+-.+.. |+.++...+|.|+..
T Consensus 413 e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 413 DYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred chheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1124555543333 3332 222 279999999998753 345778999999888864 788888888887765
No 127
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=94.16 E-value=0.64 Score=37.32 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=48.5
Q ss_pred EEEEEEEeeeec--CCCeEEEEEEcCCCccceEEEEeCCccchh--hhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 32 V~v~G~V~~~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~--~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
|.++|-|.++|. .|+. |+.|.|.+| ++.+++-++. |+ ..+ ..|..+.+|.|+|.+... . + .+.++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G--~~Ev~~F~~~--~~~~~~~-~~l~~d~~v~v~g~v~~~--~--~-~l~~~ 70 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTG--RITVLLTKDK--EELFEEA-EDILPDEVIGVSGTVSKD--G--G-LIFAD 70 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCC--EEEEEEeCch--hhhhhhh-hhccCCCEEEEEEEEecC--C--C-EEEEE
Confidence 678999999873 2556 999999996 4999988754 44 333 248999999999999542 2 2 55555
Q ss_pred eE
Q 011197 108 KI 109 (491)
Q Consensus 108 ~i 109 (491)
++
T Consensus 71 ~I 72 (79)
T cd04490 71 EI 72 (79)
T ss_pred Ee
Confidence 44
No 128
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=94.15 E-value=0.28 Score=52.50 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=59.1
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+ ..|..+.+|.|+|.+.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~-~~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERIS-ELLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 57789999999998753 2 4899999999974 99998764 355543 2499999999999997642 357
Q ss_pred EEEEeeEEEE
Q 011197 103 ELKVNKIVLV 112 (491)
Q Consensus 103 el~~~~i~il 112 (491)
.+.++++.-+
T Consensus 351 ~liv~~i~~l 360 (449)
T PRK07373 351 QLIVEDAEPI 360 (449)
T ss_pred EEEEeEeecH
Confidence 7888777543
No 129
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=93.95 E-value=0.49 Score=41.50 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=57.0
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
++++++++. ..+..|+|.|.|.+.-..- - ..++|++| +|+|-++.+. |.- .. ++++|-|.|.|.
T Consensus 46 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d--~-Y~F~D~TG--~I~VeId~~~--w~G-~~--v~p~d~V~I~Ge 109 (126)
T TIGR00156 46 MTVDFAKSM------HDGASVTLRGNIISHIGDD--R-YVFRDKSG--EINVVIPAAV--WNG-RE--VQPKDMVNISGS 109 (126)
T ss_pred EeHHHHhhC------CCCCEEEEEEEEEEEeCCc--e-EEEECCCC--CEEEEECHHH--cCC-Cc--CCCCCEEEEEEE
Confidence 556666543 5788999999998765443 2 35799997 4999887643 111 13 899999999999
Q ss_pred EEecCCCceeEEEEEeeEE
Q 011197 92 VVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (491)
|-+.-. ..||.|++|+
T Consensus 110 VDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 110 LDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred ECCCCC---CeEEEEEEEE
Confidence 986533 3678777775
No 130
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=93.78 E-value=0.25 Score=43.98 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=49.7
Q ss_pred ceeeccccCCccc-----CCCCCCcEEEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCc
Q 011197 11 KLKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (491)
Q Consensus 11 ~~~i~~l~~~~~~-----~~~~~~~~V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd 84 (491)
.++..+|.+.|++ ...+.|+.|.|.|.|..++. .++-.++...+..+...++|.++.+......... |+.||
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~ 121 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQ 121 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTS
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCC
Confidence 3555666665531 33568999999999999976 4555677677655556799998876533333446 99999
Q ss_pred EEEEEEEEEec
Q 011197 85 SIWIQGNVVPS 95 (491)
Q Consensus 85 ~V~V~G~v~~~ 95 (491)
.|.|+|.+..-
T Consensus 122 ~Vti~G~~~g~ 132 (144)
T PF12869_consen 122 KVTIKGICTGY 132 (144)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEEEEee
Confidence 99999998654
No 131
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=93.73 E-value=1.2 Score=35.14 Aligned_cols=62 Identities=16% Similarity=0.345 Sum_probs=46.0
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 45 gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
+.++++.|.|++| .+.+++-.+.. ..... |..|..|.|.|.+.... +..++.+.++..+...
T Consensus 18 ~~~~~~~l~D~tg--~i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 18 KPYLALTLQDKTG--EIEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTEE 79 (83)
T ss_pred CcEEEEEEEcCCC--eEEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCcc
Confidence 4589999999997 49998876443 22334 99999999999997632 2578888888766543
No 132
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=0.1 Score=57.28 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
.-..+|+.+.+.+|.-..+.||.||.||.+....- +.++-+ -+.|...
T Consensus 218 kG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l------~~~SGH--------------------------~~~y~e~ 265 (589)
T COG0441 218 KGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL------WELSGH--------------------------WDNYKED 265 (589)
T ss_pred CcccHHHHHHHHHHHHHHhcCceEecCCeeeeccc------chhccc--------------------------hhhcccc
Confidence 34578899999999999999999999999988532 211000 0122333
Q ss_pred cccccch--hhHH---------HHHhccC-------CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHH
Q 011197 226 AFLTVSG--QLNA---------ETYATAL-------SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 226 ~~L~~Sp--ql~l---------ql~~~g~-------~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (491)
.|+..+. ++.+ ++..... -|++++|.|||.|.+ +.-| +-+|||=|.-. |+..+++.
T Consensus 266 mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~ 343 (589)
T COG0441 266 MFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIK 343 (589)
T ss_pred ceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHH
Confidence 3333332 1111 2222221 388999999999987 4444 47899998854 67788888
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+.+.+..
T Consensus 344 ~E~~~~~~~ 352 (589)
T COG0441 344 DEFKGILEL 352 (589)
T ss_pred HHHHHHHHH
Confidence 888887777
No 133
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=93.48 E-value=0.57 Score=40.54 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=58.7
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (491)
.+++++.+.. ..+..|++.|-|.+.-. +=.| ..||.+| +|+|.++....+ -.. +++.|-|.+.|
T Consensus 45 ~~TV~~Ak~~------~Dda~V~l~GnIv~qi~--~D~y-~FrD~sG--eI~VeIdd~~w~---g~t--v~P~dkV~I~G 108 (128)
T COG3111 45 VTTVDQAKTL------HDDAWVSLEGNIVRQIG--DDRY-VFRDASG--EINVDIDDKVWN---GQT--VTPKDKVRIQG 108 (128)
T ss_pred eeEHHHhhcc------ccCCeEEEEeeEEEeeC--CceE-EEEcCCc--cEEEEecccccC---Ccc--cCcccEEEEEe
Confidence 3455555443 56889999998865432 2345 4799997 599999876421 124 99999999999
Q ss_pred EEEecCCCceeEEEEEeeEEEE
Q 011197 91 NVVPSQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~il 112 (491)
.+-+.-. ..||.|+.|+.+
T Consensus 109 evDk~~~---~~eIdV~~I~k~ 127 (128)
T COG3111 109 EVDKDWN---SVEIDVKHIEKL 127 (128)
T ss_pred EEcCCCc---cceeEhhheEec
Confidence 9987633 478888888765
No 134
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=93.12 E-value=0.55 Score=36.85 Aligned_cols=71 Identities=20% Similarity=0.384 Sum_probs=49.1
Q ss_pred EEEEEeeeec----CC-CeEEEEEEcCCCccceEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 34 v~G~V~~~R~----~g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
+.|.|.+++. .| .++++.|.|++| .+.+++-.+ .|+.. .. |..|..|.|.|.+.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg--~~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTG--SIEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCC--eEEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 4566665432 23 479999999996 488888753 23322 34 99999999999998753 25788877
Q ss_pred eEEEEc
Q 011197 108 KIVLVG 113 (491)
Q Consensus 108 ~i~ils 113 (491)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 765443
No 135
>PRK10053 hypothetical protein; Provisional
Probab=92.47 E-value=1 Score=39.79 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=56.6
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
+++++.++. ..+..|+|.|.|.+.=..- - ...+|++| .|+|-++.+.. . -.. ++++|-|.+.|.
T Consensus 50 ~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG--~I~VeID~~~w--~-G~~--v~p~~kV~I~Ge 113 (130)
T PRK10053 50 MTVEQAKTM------HDGATVSLRGNLIDHKGDD--R-YVFRDKSG--EINVIIPAAVF--D-GRE--VQPDQMININGS 113 (130)
T ss_pred EEHHHhhcC------cCCCeEEEEEEEEEEeCCc--e-EEEECCCC--cEEEEeCHHHc--C-CCc--CCCCCEEEEEEE
Confidence 456665543 5688999999997653332 2 35799997 49998886531 1 113 999999999999
Q ss_pred EEecCCCceeEEEEEeeEE
Q 011197 92 VVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (491)
+-+.-. ..||.|++|+
T Consensus 114 vDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred ECCCCC---CeEEEEEEEe
Confidence 987633 3788887775
No 136
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=92.39 E-value=1.3 Score=37.32 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=49.1
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+.+.. . +.+.+..| ..++|.++... . +..+-+|.|.|++.. ..+|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 689999999999999754 2 34555444 36999888643 3 788899999999974 246666
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
..+.-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 66555443
No 137
>PRK15491 replication factor A; Provisional
Probab=92.29 E-value=0.86 Score=47.62 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=66.4
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---e----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R----~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
-++|+||.. .+..|++.|||.++ | .. |++.=+.|-|.+| +|++++..+... .+..+.|
T Consensus 57 ~~kI~dL~~--------~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~l 124 (374)
T PRK15491 57 TTKIADINE--------SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDI 124 (374)
T ss_pred cccHHHCCC--------CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCc
Confidence 356777754 34679999999986 3 22 4666678999996 599999875421 1222349
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCC
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~ 118 (491)
..|+++.|.|.+.+.-. .+||.+.+-..+.+|...
T Consensus 125 e~G~v~~I~~~~~~~y~---g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 125 EVGKSLNISGYAKEGYS---GIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCCEEEEeeeeccCcc---cEEEEeCCCceeeecccc
Confidence 99999999997554432 489999988888887643
No 138
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=91.92 E-value=0.7 Score=54.50 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEeeeecC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEE
Q 011197 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el 104 (491)
.+..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |+..+ ..|..|.++.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~-~~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQR-REALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeEEE
Confidence 56789999999988652 34999999999974 999998753 55443 2499999999999998642 25788
Q ss_pred EEeeEEEEcc
Q 011197 105 KVNKIVLVGK 114 (491)
Q Consensus 105 ~~~~i~ils~ 114 (491)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888865544
No 139
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=91.87 E-value=1.1 Score=42.27 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=64.5
Q ss_pred ceeeccccCCccc---CC-CCCC---cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCC
Q 011197 11 KLKIVDVKGGPNE---GL-DRVG---LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITT 82 (491)
Q Consensus 11 ~~~i~~l~~~~~~---~~-~~~~---~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~ 82 (491)
.++||+|+..... ++ .-.+ ..|++.|||.++..+-.-+|+.|.||+|. |-|-..+.... -++.+. +..
T Consensus 41 pvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~~~ 116 (258)
T COG5235 41 PVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--LEE 116 (258)
T ss_pred eeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--ccc
Confidence 4899999875210 00 0012 24789999999999977788999999974 88877765432 233445 778
Q ss_pred CcEEEEEEEEEecCCCceeEEEEEeeEEE
Q 011197 83 GASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (491)
Q Consensus 83 gd~V~V~G~v~~~~~~~~~~el~~~~i~i 111 (491)
|-.|.|.|-++.=.+ +..|.+..|.-
T Consensus 117 ~~yvkV~G~lk~F~G---K~~I~~~~i~~ 142 (258)
T COG5235 117 QNYVKVNGSLKTFNG---KRSISASHISA 142 (258)
T ss_pred ccEEEEecceeeeCC---eeEEehhheee
Confidence 889999999876543 46666655543
No 140
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=91.75 E-value=0.96 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=38.5
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.++... . +..+.+|.|.|++....+
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~~ 74 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDGT 74 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS-
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCCC
Confidence 699999999999999976665444334653 5888877542 2 667899999999977643
No 141
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.57 E-value=0.75 Score=54.77 Aligned_cols=77 Identities=9% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.+++|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+ ..|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~-~~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLS-DHLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 57789999999998752 2 4899999999974 99998764 355543 2499999999999997643 257
Q ss_pred EEEEeeEEEE
Q 011197 103 ELKVNKIVLV 112 (491)
Q Consensus 103 el~~~~i~il 112 (491)
.+.++++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7788777644
No 142
>PRK14699 replication factor A; Provisional
Probab=91.55 E-value=1.3 Score=47.78 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee-------cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-------~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.+|+||.. .+..|++.|+|.++- .. |+++=+.|-|.|| +|.+++..+.. +.+..|.|.
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG--~ir~tlW~~~a--~~~~~g~l~ 125 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETG--KIKLTLWDNMA--DLIKAGKIK 125 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCC--eEEEEEecCcc--chhhhcCCC
Confidence 46667753 456799999999973 22 4666678999997 59999987542 123333499
Q ss_pred CCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCC
Q 011197 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~ 122 (491)
.||+|.|.|.++.-. ++.||.+.+.+++.++....+.+
T Consensus 126 ~GDvv~I~~~~r~~~---~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 126 AGQTLQISGYAKQGY---SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred CCCEEEEcceeccCC---CCceEEeCCCceeeccCcccccC
Confidence 999999999643322 34789888777777765444443
No 143
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=90.83 E-value=1.7 Score=40.59 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCCcEEEEEEEEeeeec--CCCeEEEEEEcCCCccceEEEEeCCccchhh----hhhcCCCCCcEEEEEEEEEecCCCce
Q 011197 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPSQGSKQ 100 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~----~~~~~L~~gd~V~V~G~v~~~~~~~~ 100 (491)
...+.|++.|-|.+.+. .+++.++.|.|++| +|-+++..+....-. ..- +..|++|.|+|.+..=+..
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtG--ti~vva~~~tee~l~~n~~~p~--~~eGe~veVtGrv~~yrG~-- 122 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTG--TITVVASRSTEETLELNEGMPV--TVEGEIVEVTGRVEEYRGS-- 122 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCC--cEEEEEecChhHhHhhcCCCCc--cccCcEEEEEEEEEEeCCC--
Confidence 56778999999999984 47899999999996 599888876432111 113 6689999999998876543
Q ss_pred eEEEEEe
Q 011197 101 KVELKVN 107 (491)
Q Consensus 101 ~~el~~~ 107 (491)
.||.+.
T Consensus 123 -~eVkvn 128 (204)
T COG4085 123 -SEVKVN 128 (204)
T ss_pred -ceeecc
Confidence 455544
No 144
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=90.71 E-value=0.38 Score=55.79 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=40.3
Q ss_pred ceEEEEEEeCCeeEeechh-hhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCccc
Q 011197 401 TVAAMDMLVPRIGELIGGS-QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRD 478 (491)
Q Consensus 401 ~~~~fdl~~~G~gEi~~G~-~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~p-p~~G~glGidRL~m~l~g~~~Ird 478 (491)
-.-|+|+++.|+ ||.|=- ++-++- .| . |- -+| ++---|+|+|||++++-|.+++=|
T Consensus 197 cGPcsEi~~~gl-EiwnlVFmqy~~~---------~g-~------~~-----~Lp~k~VDTG~GLER~~~v~qg~~t~yd 254 (900)
T PRK13902 197 AGPCFEVLVRGL-ELATLVFMQYKKD---------GN-R------YV-----EMPLKIVDTGYGLERIAWASQGTPTAYD 254 (900)
T ss_pred CCCceeeeeCCE-EeeeeeeeEEEcC---------CC-e------ee-----eCCCCeeeCCcCHHHHHHHHcCCCchHH
Confidence 345788888888 998863 221110 01 0 10 133 666689999999999999999999
Q ss_pred ccccC
Q 011197 479 AIPFP 483 (491)
Q Consensus 479 vi~FP 483 (491)
+ .|+
T Consensus 255 t-~f~ 258 (900)
T PRK13902 255 A-IFG 258 (900)
T ss_pred H-HHH
Confidence 8 564
No 145
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=90.31 E-value=1.3 Score=52.74 Aligned_cols=80 Identities=14% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.++.|+|+|.|..+|.. | .++|+.|.|.+|. +.+++-++ .|+... ..|..|.+|.|+|.+..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~-~~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYR-SLLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHH-HHhccCCEEEEEEEEEecCC--Cce
Confidence 46789999999998752 3 4899999999974 99999864 344443 23999999999999975432 247
Q ss_pred EEEEeeEEEEcc
Q 011197 103 ELKVNKIVLVGK 114 (491)
Q Consensus 103 el~~~~i~ils~ 114 (491)
.+.++++.-+..
T Consensus 1063 ~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1063 KLICEEIEPLVI 1074 (1151)
T ss_pred EEEEeeeecHhh
Confidence 888887765543
No 146
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.70 E-value=0.86 Score=47.61 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeec------cCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~------~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
-..+|..+.+.+.+-|..+|..+|+||+..- ..+|...-.+.+. |..+.
T Consensus 73 qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlk-------------------------DQGGE 127 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLK-------------------------DQGGE 127 (518)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehh-------------------------hcCCc
Confidence 4678999999999999999999999998653 3333331111110 00112
Q ss_pred ccCcccccccchhhHHHHHhc-cCC--ceEEEccccccCCC-CCCcccccccceeeEeccC-C----HHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNAETYAT-ALS--NVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA-D----LKDDMACATAYLQ 291 (491)
Q Consensus 221 ~f~~~~~L~~Spql~lql~~~-g~~--rvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~-~----~~~lm~~~e~li~ 291 (491)
-.....-|+++=- +++++ .+. +-|+|+++||.+.. -|.=-.-||.|+|+-.+.. + -.+++..+-+++.
T Consensus 128 l~SLRYDLTVPfA---RylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 128 LCSLRYDLTVPFA---RYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred EEEeecccccHHH---HHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 2233334555433 33333 222 45899999998853 1333457999999988861 2 2455555555443
No 147
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=89.58 E-value=0.63 Score=54.02 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=24.7
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
++---|+|+|||++++-|.+|+=|+ .|+
T Consensus 235 k~VDTG~GLER~~~v~qg~~t~ydt-~f~ 262 (902)
T TIGR03683 235 KIVDTGYGLERFVWASQGTPTAYDA-IFP 262 (902)
T ss_pred CceecCCCHHHHHHHHcCCCchHHH-HHH
Confidence 6666899999999999999999998 664
No 148
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=89.57 E-value=1.2 Score=53.09 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=60.1
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.+..|++.|.|.++|.. | .++|+.|.|.+| .+.+++-++ .|+.... .|..|++|.|+|.+.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG--~iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSG--RIEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCC--cEEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 47889999999998752 2 499999999997 499999864 3444332 399999999999997642 357
Q ss_pred EEEEeeEEEEcc
Q 011197 103 ELKVNKIVLVGK 114 (491)
Q Consensus 103 el~~~~i~ils~ 114 (491)
.|.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 788887765544
No 149
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=89.42 E-value=4.4 Score=35.68 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=56.5
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeee------c-C--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR------A-Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R------~-~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.++|+||... ...|.+.|.|.++- . . +++.-+.|.|.|| +|.+.+..+. ... |.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG--~I~~tlW~~~-----a~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETG--RVKLTLWGEQ-----AGS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCC--EEEEEEeCCc-----ccc--CC
Confidence 3677787632 25688899998532 1 2 2366688899997 4999887653 234 89
Q ss_pred CCcEEEEEE-EEEecCCCceeEEEEEee---EEEEcc
Q 011197 82 TGASIWIQG-NVVPSQGSKQKVELKVNK---IVLVGK 114 (491)
Q Consensus 82 ~gd~V~V~G-~v~~~~~~~~~~el~~~~---i~ils~ 114 (491)
.||+|.|.| .+..- . +.++|.+.+ +..+.+
T Consensus 67 ~GdvV~I~na~v~~f-~--G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 67 EGEVVEIENAWTTLY-R--GKVQLNVGKYGSISESDD 100 (129)
T ss_pred CCCEEEEECcEEeee-C--CEEEEEECCCEEEEECCc
Confidence 999999994 55443 2 368999885 555444
No 150
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=89.27 E-value=1.3 Score=41.75 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhCCcEEeecceeecc
Q 011197 153 ALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 153 ~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 46678899999999999999999875
No 151
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=89.22 E-value=6.7 Score=34.65 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=51.7
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEe--eeec---CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~--~~R~---~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V 86 (491)
.+..++... + ...++.|+|.|+|. ++.. ...+.|. |.|+. +.+.|+.+...+. . .+.|.-|
T Consensus 37 ~t~se~~~~---~-~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-----~--F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAE---P-QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-----L--FREGQGV 102 (131)
T ss_dssp E-TTTTTTT---S-T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-----T----TTSEE
T ss_pred cCHHHHhhc---c-ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-----c--ccCCCeE
Confidence 456666654 1 24799999999998 5543 3678885 78986 5699998875431 3 7789999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCC
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~ 118 (491)
-|+|.+... + ..+|+ +||.||+..
T Consensus 103 Vv~G~~~~~--g----~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 103 VVEGRLGED--G----VFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEEECCT--S----EEEEE--EEEETS---
T ss_pred EEEEEECCC--C----EEEEE--EEEeCCCCC
Confidence 999998322 2 23333 567788643
No 152
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=89.09 E-value=1.7 Score=51.44 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCcEEEEEEEEeeeecC-----CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~-----gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.++.|+|+|.|..+|.. ++++|+.|.|.+|. +.+++-++. |+... ..|..|.+|.|+|.+.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPET--YIHFS-DKLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998652 25999999999974 999987653 55443 2399999999999997642 246
Q ss_pred EEEEeeEEEEc
Q 011197 103 ELKVNKIVLVG 113 (491)
Q Consensus 103 el~~~~i~ils 113 (491)
.+.++++.-+.
T Consensus 1014 ~~~~~~i~~l~ 1024 (1107)
T PRK06920 1014 QWIVNGLYPLE 1024 (1107)
T ss_pred EEEEeecccHH
Confidence 77777775443
No 153
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=88.41 E-value=1.2 Score=46.53 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC---CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
-.+.+..|...+++.|..+||..|+||+|...++ + |. .+.|.++...
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-------------------------- 69 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-------------------------- 69 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCC--------------------------
Confidence 3456678888999999999999999999998764 1 11 2466553221
Q ss_pred cccCccccccc--chhhHH---HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC
Q 011197 220 DFFEKPAFLTV--SGQLNA---ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (491)
Q Consensus 220 ~~f~~~~~L~~--Spql~l---ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (491)
+..+-|+- .++.-. ..+...-.|+.+.|++||+.+... .-..||+|+=+|.-+.
T Consensus 70 ---g~~l~LRpD~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~~-g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 70 ---GGRLGLRPDFTIPVARIHATLLAGTPLRLSYAGKVFRAREGRH-GRRAEFLQAGIELLGD 128 (390)
T ss_pred ---CCeEEecccccHHHHHHHHHhcCCCCceeeecchhhhcchhcc-CcccchhhhhhHHhCC
Confidence 22222221 122222 233345679999999999983322 2335999998888655
No 154
>PRK07217 replication factor A; Reviewed
Probab=88.26 E-value=6.9 Score=39.60 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=68.2
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeee--ecCCCeEE-EEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~--R~~gkl~F-i~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (491)
+.|+||.. .++.|+|.|+|.++ +.+.++.. -.|-|.|| +|..++..+.. ... |..|++|.+
T Consensus 73 ~kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG--~IkfT~W~~s~----~~~--leeGd~~rI 136 (311)
T PRK07217 73 VNIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETG--TIKFTKWAKSD----LPE--LEEGKSYLL 136 (311)
T ss_pred eeeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCc--eEEEEEccCCC----CCc--ccCCCEEEE
Confidence 46777753 46779999999988 44566776 56789986 48888876421 224 999999999
Q ss_pred EEEEEecCCCceeEEEEEeeEEEEccCCCCCCC
Q 011197 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (491)
Q Consensus 89 ~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~ 121 (491)
.+..+..-.+ ..+|.+.+...+...+.+.++
T Consensus 137 ~na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 137 KNVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred EeEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 9988876654 689999888888776654544
No 155
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=86.62 E-value=0.4 Score=49.12 Aligned_cols=36 Identities=33% Similarity=0.655 Sum_probs=30.2
Q ss_pred HHHHHhcCCC-CccceeccHHHHHHHHcCCCCccccc
Q 011197 445 YLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAI 480 (491)
Q Consensus 445 yl~~~~~G~p-p~~G~glGidRL~m~l~g~~~Irdvi 480 (491)
-+.+.+||.| |---.|||+|||.|+|.|.++||..+
T Consensus 313 P~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~mv 349 (536)
T COG2024 313 PIALAEYGIDYPVMNLGLGVERLAMILHGADDVRSMV 349 (536)
T ss_pred hHHHHHcCCCCceeecchhHHHHHHHHhCchHHhhhh
Confidence 3455677876 88889999999999999999999753
No 156
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=85.47 E-value=3.6 Score=48.44 Aligned_cols=74 Identities=14% Similarity=0.341 Sum_probs=55.2
Q ss_pred CcEEEEEEEEeeeec---C---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 29 GLMIVVAGWVRTLRA---Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~---~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
++.+.+.|+|.++|. . +.++|+.|.|.+|. +.+++-++. |+... ..|..|.+|.|+|.+.... +..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPET--YRQYK-DELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---Cee
Confidence 456889999988653 1 24999999999974 999998753 44443 2399999999999997642 257
Q ss_pred EEEEeeEE
Q 011197 103 ELKVNKIV 110 (491)
Q Consensus 103 el~~~~i~ 110 (491)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777765
No 157
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=84.77 E-value=5.3 Score=33.65 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=48.4
Q ss_pred cEEEEEEEEee---eec------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEE-ecCCC-
Q 011197 30 LMIVVAGWVRT---LRA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVV-PSQGS- 98 (491)
Q Consensus 30 ~~V~v~G~V~~---~R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~-~~~~~- 98 (491)
..++++|||.+ +|. .|++.-++|.|..| +.|++.+-.+.. +... ..|..|+++.+.|--+ .....
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~--~~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAV--DKFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHH--HHhh-cccccccEEEEeccEEeeccccC
Confidence 35899999985 332 26788899999954 479999986531 1121 2399999999997544 33221
Q ss_pred ---ceeEEEEEe
Q 011197 99 ---KQKVELKVN 107 (491)
Q Consensus 99 ---~~~~el~~~ 107 (491)
..+.||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 235666654
No 158
>PLN02900 alanyl-tRNA synthetase
Probab=84.49 E-value=7.2 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.2
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdv 479 (491)
|+---|+|+|||++++-|.+|.=|+
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydt 263 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDT 263 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 5566899999999999999998887
No 159
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=84.14 E-value=10 Score=30.19 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE-EEEEecCCCceeEEEEEeeEE
Q 011197 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 45 gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~v~~~~~~~~~~el~~~~i~ 110 (491)
++..=+.|.|.+| .|.+++..... ... +..|++|.++ |.+..-. +.++|.+.+..
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~~ 77 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKNS 77 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCce
Confidence 5566678899996 59998886542 234 9999999999 7775543 35777776543
No 160
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=84.13 E-value=9.1 Score=42.40 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.2
Q ss_pred CccceeccHHHHHHHHcCCCCccccccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
++-.-|+|+|||++++-|.+|+=|+=+|
T Consensus 224 k~IDTGmGLERl~~vlqg~~s~ydtdlf 251 (594)
T PRK01584 224 KCVDTGMGIERTIAFLQGKSSVYDTEAF 251 (594)
T ss_pred CceeCCcCHHHHHHHHcCCCCccchhhh
Confidence 6677999999999999999999888443
No 161
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=83.82 E-value=9.7 Score=44.32 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.2
Q ss_pred CccceeccHHHHHHHHcCCCCcccccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+|---|+|+|||++++-|.+|.=|+=+
T Consensus 219 ~~iDTG~GlER~~~ilq~~~snydtd~ 245 (865)
T PRK00252 219 KNIDTGMGLERIAAVLQGVHSNYETDL 245 (865)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhh
Confidence 566689999999999999999888733
No 162
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=83.43 E-value=22 Score=28.60 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=46.8
Q ss_pred EEEEEEEeee--ec--CCC-eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC-CCcEEEEEEEEEecCCCceeEEEE
Q 011197 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (491)
Q Consensus 32 V~v~G~V~~~--R~--~gk-l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~-~gd~V~V~G~v~~~~~~~~~~el~ 105 (491)
|+|.|-|-.+ |. .|+ +.-+.|.|.++ +|-|..-.+ ...+.... |+ .|+.|.|.|.+.-..= .++..+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~--Si~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f-~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTS--SITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTF-SKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCC--CEEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccC-CCceEEE
Confidence 6788988776 33 344 44578999985 466644332 11122445 89 9999999999976542 2367776
Q ss_pred EeeEE
Q 011197 106 VNKIV 110 (491)
Q Consensus 106 ~~~i~ 110 (491)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66553
No 163
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.37 E-value=3.2 Score=47.58 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.9
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
|+-==|+|+|||+..+-|.+++=|+.+|.
T Consensus 223 k~IDTGmGLERi~~vlQ~~~tnyd~dlf~ 251 (879)
T COG0013 223 KNIDTGMGLERIAAVLQGVPTNYDTDLFR 251 (879)
T ss_pred CCcccCccHHHHHHHHcCCCcchhhhhhH
Confidence 44557899999999999999999988774
No 164
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=83.00 E-value=9.8 Score=38.83 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=53.2
Q ss_pred CcEEEEEEEEeeeec----CCC-eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEE
Q 011197 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~----~gk-l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~e 103 (491)
|+.|....-|.+... .|+ -.-+.|.|.|| +|.+.+....+ +.... +..|++|.|.|.+..-+. .+.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG--~I~ak~W~~~~--~~~~~--~~~g~vv~v~G~v~~y~g---~~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSG--DIEAKLWDVSP--EDEAT--YVPETIVHVKGDIINYRG---RKQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCc--EEEEEeCCCCh--hhHhh--cCCCCEEEEEEEEEEECC---cce
Confidence 444554555555431 243 55567889997 49998876432 12345 999999999999987644 467
Q ss_pred EEEeeEEEEccCC
Q 011197 104 LKVNKIVLVGKSD 116 (491)
Q Consensus 104 l~~~~i~ils~~~ 116 (491)
+.+.++.++.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888888877743
No 165
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=82.99 E-value=16 Score=27.56 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=41.0
Q ss_pred EEEEEeeeec--C--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 34 VAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 34 v~G~V~~~R~--~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|.|.+.+. . ++..-+.+.|+++ .+.++.-.... +. .+. ++.|+.+.|.|++..... .+++.-
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g--~i~~~~F~~~~-~~-~~~--~~~G~~~~v~Gkv~~~~~---~~qi~~ 69 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTG--TLTLVFFNFQP-YL-KKQ--LPPGTRVRVSGKVKRFRG---GLQIVH 69 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCC--EEEEEEECCCH-HH-Hhc--CCCCCEEEEEEEEeecCC---eeEEeC
Confidence 5566665432 1 3456678899985 48887764211 11 234 999999999999987532 355543
No 166
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=82.96 E-value=8.8 Score=38.08 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=54.6
Q ss_pred cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 30 ~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
..|.+.|||.++-.+..-++++|-|++|. |=+....... .-.+... |..|.+|.|.|.++.-.+ ..+|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~G---k~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQG---KKSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCC---ceeEEEEe
Confidence 45789999999988877778899999974 6665554321 1122345 999999999999987654 35777666
Q ss_pred EEEE
Q 011197 109 IVLV 112 (491)
Q Consensus 109 i~il 112 (491)
|.-+
T Consensus 142 I~pv 145 (265)
T KOG3108|consen 142 IRPV 145 (265)
T ss_pred eeee
Confidence 6533
No 167
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=82.55 E-value=5 Score=46.55 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.5
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdv 479 (491)
||---|+|+|||++++-|.+|.=|+
T Consensus 213 ~~IDTGmGLERl~~vlqg~~snydt 237 (851)
T TIGR00344 213 KNIDTGMGLERFVAVLQGVPTNYDT 237 (851)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 5666899999999999999998887
No 168
>PRK12366 replication factor A; Reviewed
Probab=82.34 E-value=8.3 Score=43.29 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=62.3
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.++|++|... ..|..++|.|||.++ |. .|++.=+.|.|.+| .|++++-.+.. +.+.. |.
T Consensus 279 ~~pI~~L~~~------~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~--d~~~~--l~ 346 (637)
T PRK12366 279 IVNIEELTEF------EDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKA--KILEN--LK 346 (637)
T ss_pred ceeHHHCCcc------cCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchh--hhhcc--cC
Confidence 3556566432 156789999999986 32 27888899999996 59999987642 12234 77
Q ss_pred CCcEEEEEEEEEec---CCCceeEEEEEeeEEEEcc
Q 011197 82 TGASIWIQGNVVPS---QGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 82 ~gd~V~V~G~v~~~---~~~~~~~el~~~~i~ils~ 114 (491)
.|+++.|.+-..+. ..+.+++||.+..-..+.+
T Consensus 347 ~G~vy~is~~~vk~y~~~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 347 EGDAVKIENCKVRTYYDNEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred CCCEEEEecCEEeeccccCCCcCEEEEcCCceEEEe
Confidence 99999999865552 1233468988876554433
No 169
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=81.37 E-value=3.8 Score=48.32 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeec-cCCC-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~-~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
.=.+|..+...+-+.|+++|++|++||-+.. ++|- +..++..+=+ .++.--..
T Consensus 931 ~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld-------------------------~sG~~v~L 985 (1351)
T KOG1035|consen 931 NNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLD-------------------------HSGDVVEL 985 (1351)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeec-------------------------CCCCEEEe
Confidence 4456788888899999999999999996554 3332 2223322211 11222234
Q ss_pred ccccccchhhHHHHHhcc---CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHHHHHHHHHH
Q 011197 225 PAFLTVSGQLNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQL 292 (491)
Q Consensus 225 ~~~L~~Spql~lql~~~g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li~~ 292 (491)
|.-|++--- +.++.. .-|-|+|++|||-+. .+ |-.|++.+++-....+ -.+++.++-+++..
T Consensus 986 p~DLr~pfa---r~vs~N~~~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 986 PYDLRLPFA---RYVSRNSVLSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred eccccchHH---HHhhhchHHHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 444443211 222211 246689999999987 24 9999999999877654 34566666665554
No 170
>PRK07211 replication factor A; Reviewed
Probab=80.94 E-value=10 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeec-----------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~-----------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
.+|++|.. -...|+|.|||.++-. .|++.=+.|-|.+| .|++++..+.... .... |
T Consensus 54 ~~I~dL~p--------g~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad~-~~~~--L 120 (485)
T PRK07211 54 NGIADIEP--------GMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAVA-AEEE--L 120 (485)
T ss_pred ccHhhCCC--------CCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhHh-hhcc--c
Confidence 35666653 2356999999987522 26888899999997 5999998754211 1224 9
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
..|+++.|.|.+++. -+.+||.+..+
T Consensus 121 e~GdV~~I~~~~~~~---ys~~El~i~~v 146 (485)
T PRK07211 121 EVGQVLRIKGRPKDG---YNGLEVSVDKV 146 (485)
T ss_pred CCCCEEEEeceEecc---ccceEEEEeeE
Confidence 999999999987533 23578887754
No 171
>PRK14699 replication factor A; Provisional
Probab=80.79 E-value=9.4 Score=41.35 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=61.1
Q ss_pred CCcEEEEEEEEeee---e-----c--CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 28 VGLMIVVAGWVRTL---R-----A--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 28 ~~~~V~v~G~V~~~---R-----~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
.+..|+|.|+|.++ | + .|++.=+.|.|++| .|.+.+..+... .... +..||.|.|.+.-++...
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG--~Ir~T~W~~~a~--~~~~--i~~Gd~v~i~~~y~~~~~ 358 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTG--KIRLTLWDEKTN--FLDE--IDFDETVEVLNAYSRENT 358 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCC--eEEEEEeCcccc--cccc--cCCCceEEEEeEEEEecc
Confidence 45789999999965 2 1 25667788999997 499999765432 1234 889999998876555444
Q ss_pred CceeEEEEEeeEEEEccCC
Q 011197 98 SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 98 ~~~~~el~~~~i~ils~~~ 116 (491)
..+.+||.+.+-.++.+|.
T Consensus 359 ~~~~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 359 FSQQVELNLGARGIIQKSE 377 (484)
T ss_pred CCccEEEEecCceeEeecC
Confidence 3457999999888888875
No 172
>PRK07218 replication factor A; Provisional
Probab=80.74 E-value=12 Score=39.77 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=57.5
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeee-----c---CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-----~---~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~ 82 (491)
..+|+||.. .++.|.|.|+|.++- . .+.+.=+.|-|.|| +|.+++..+. . |..
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG--~Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETG--TISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCC--eEEEEEECCC-------C--CCC
Confidence 456777754 347799999999882 1 24566677778775 4777777632 3 999
Q ss_pred CcEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 83 gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
||+|.|.+-..+.-.+ .++|.+.+-.-+..
T Consensus 119 Gdvv~I~na~vre~~g--~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWDG--RPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccCC--ceEEeccCcceEEE
Confidence 9999999876665443 58888765544443
No 173
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=80.58 E-value=1.7 Score=45.73 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=32.2
Q ss_pred EEEEEEeCCeeE-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHH
Q 011197 403 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 469 (491)
Q Consensus 403 ~~fdl~~~G~gE-i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~ 469 (491)
--|+.|.+|.|+ |++|+ ||+.+.+++ |. ..|..||++|+|||+.+
T Consensus 274 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 274 IVFEGYVDGVGNPIASGG----RYDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred eEEEEEECCCCCcccCCc----chhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 458889888766 77776 455555444 21 23889999999999984
No 174
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=80.57 E-value=1.2 Score=46.80 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=33.7
Q ss_pred EEEEEEeCCeeE-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011197 403 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 403 ~~fdl~~~G~gE-i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g 472 (491)
--|+.|.+|.|. |++|+ ||+.+.+++ | +-.|..|||+|+|||+.++-+
T Consensus 281 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 281 LVFAAYIPGRGQALARGG----RYDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred CEEEEEECCCCCcccCCC----CccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 358999998765 77777 344444333 1 124889999999999987744
No 175
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=80.48 E-value=7.8 Score=41.12 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=56.5
Q ss_pred CcEEEEEEEEeeeecC-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
=..|+|.|-|.+++.. .+-.|+.|.|... .|+|++-+.....-.+ . +..|+-|.|.|.+.-=+.. |.+.|.++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A--~i~c~mf~~~~~~l~f-~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERA--QIRCVMFKGNNRRLKF-R--PEEGMQVLVRGKISLYEPR-GDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCc--eEEEEEEcCcccccCC-C--ccCCCEEEEEEEEEEEcCC-CceEEEEe
Confidence 3569999999999864 2278889999984 5999998754211011 3 8899999999998764432 47888888
Q ss_pred eEEE
Q 011197 108 KIVL 111 (491)
Q Consensus 108 ~i~i 111 (491)
+++-
T Consensus 97 ~~~p 100 (440)
T COG1570 97 SMEP 100 (440)
T ss_pred cCCc
Confidence 7763
No 176
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=78.91 E-value=0.94 Score=48.60 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhh--CCcEEeecceeeccCC
Q 011197 148 ARVRNALAYATHKFFQE--NGFIWISSPIITASDC 180 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~--~~F~EV~TPiL~~~~~ 180 (491)
..++..|+++.|++|.. .+++||+||+|.+...
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V 74 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEV 74 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCcHHH
Confidence 45678899999999965 5799999999998543
No 177
>PRK15491 replication factor A; Provisional
Probab=78.66 E-value=15 Score=38.52 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=56.4
Q ss_pred CcEEEEEEEEeeeec-------CC---CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE-EEecCC
Q 011197 29 GLMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN-VVPSQG 97 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~-------~g---kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~-v~~~~~ 97 (491)
+..|.|.|+|.++-. .| ++.=+.|-|.+| +|.+.+..+... .+.. |..||+|.+.+. ++.+.
T Consensus 176 ~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG--~Ir~t~W~~~a~--~~~~--l~~Gd~V~i~~~~~r~~~- 248 (374)
T PRK15491 176 DSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETG--KIRVTLWDGKTD--LADK--LENGDSVEIINGYARTNN- 248 (374)
T ss_pred CccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCC--eEEEEEecchhc--cccc--CCCCCEEEEEeceEEEec-
Confidence 345999999998632 23 455588999987 499988875421 1234 899999999764 54332
Q ss_pred CceeEEEEEeeEEEEccCC
Q 011197 98 SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 98 ~~~~~el~~~~i~ils~~~ 116 (491)
-.+.+||.+.+-..+.+|.
T Consensus 249 ~~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 249 YSQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred cCCCEEEEeCCCceEEECC
Confidence 2347999987777777775
No 178
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=78.03 E-value=14 Score=39.43 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=58.6
Q ss_pred CcEEEEEEEEeeeecC-CCeEEEEEEcCCCccceEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
-..|+|.|=|.+.+.+ ++=+|+.|.|.. ..|-||+.+... ..+ .. +..|+-|.|.|.+.--+. .|.+.|.|
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~--a~i~~~~~~~~~--~~~~~~--~~~G~~v~v~g~~~~y~~-~g~~ql~v 95 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEI--AQIRCVMFKGSA--RRLKFK--PEEGMKVLVRGKVSLYEP-RGDYQLIV 95 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCC--cEEEEEEEcChh--hcCCCC--CCCCCEEEEEEEEEEECC-CCCEEEEE
Confidence 4679999999999765 445788999997 469999987642 111 13 889999999999985432 23699999
Q ss_pred eeEEEEc
Q 011197 107 NKIVLVG 113 (491)
Q Consensus 107 ~~i~ils 113 (491)
.++...+
T Consensus 96 ~~i~~~g 102 (438)
T PRK00286 96 EEIEPAG 102 (438)
T ss_pred EEeeeCC
Confidence 9988644
No 179
>PRK00036 primosomal replication protein N; Reviewed
Probab=77.99 E-value=8.1 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=39.5
Q ss_pred ceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
.||+++..+. .+.... ++.|+.|.|+|.+..+..+...+=++++.++.+.+.
T Consensus 48 ~i~ava~G~~--a~~~~~--l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 48 TISAVALGDL--ALLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEhhH--HHHhcc--cCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 4777777632 233456 999999999999997655556899999999988655
No 180
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=77.82 E-value=40 Score=29.30 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=35.6
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----C-Cc--eeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----G-SK--QKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~-~~--~~~el~~~~i~ils~~ 115 (491)
+.|++-...... ..+. |+.|+-|.|+|.+.... . +. ...||.|+++++|++.
T Consensus 46 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 46 FNLEIWGKTAQV-AADY--VKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred EEEEEehHHHHH-HHHH--cCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 667666532111 1235 99999999999998642 1 21 3589999999999754
No 181
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=77.61 E-value=14 Score=39.56 Aligned_cols=75 Identities=11% Similarity=0.256 Sum_probs=55.8
Q ss_pred EEEEEEEEeeeecC-CCeEEEEEEcCCCccceEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 31 MIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 31 ~V~v~G~V~~~R~~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
.|+|.|=|.+.+.+ .+=+|+.|.|.. ..|.||+-+.... .+ -. +..|+-|.|.|.+.--+.. |.+.|.|++
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~--a~i~~vmf~~~~~--~l~f~--~~~G~~V~v~g~v~~y~~~-G~~ql~v~~ 91 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDEN--AQVRCVMFRGNNN--RLKFR--PQNGQQVLVRGGISVYEPR-GDYQIICFE 91 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCC--cEEEEEEEcChhh--CCCCC--CCCCCEEEEEEEEEEECCC-CcEEEEEEE
Confidence 79999999999764 345777999987 4699999876421 11 13 7899999999998654332 369999998
Q ss_pred EEEE
Q 011197 109 IVLV 112 (491)
Q Consensus 109 i~il 112 (491)
++-.
T Consensus 92 i~~~ 95 (432)
T TIGR00237 92 MQPA 95 (432)
T ss_pred eccC
Confidence 8753
No 182
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.04 E-value=1.4 Score=46.07 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~ 179 (491)
.....+-..+++..-+|+.++||+-+.||.+....
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rke 216 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKE 216 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHH
Confidence 45667778899999999999999999999998854
No 183
>PRK07080 hypothetical protein; Validated
Probab=76.70 E-value=3.1 Score=42.08 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=38.0
Q ss_pred ceEE-EccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHH
Q 011197 245 NVYT-FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfe-I~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (491)
++|. .|.|||+|++.+.+-+-||+|-|+-... +-+++.+.-+..+..
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~ 200 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIER 200 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHH
Confidence 6665 5999999999888888999999997764 777877777766665
No 184
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=76.66 E-value=1.5 Score=47.26 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHh--hCCcEEeecceeeccC
Q 011197 147 VARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~--~~~F~EV~TPiL~~~~ 179 (491)
-..+++.|+..-|++|. ..+.+||+||+|.+..
T Consensus 39 G~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~ 73 (539)
T PRK14894 39 GVELKNNIIADWWRTNVYERDDMEGLDAAILMNRL 73 (539)
T ss_pred hHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHh
Confidence 34567788888888873 5567799999888744
No 185
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=76.18 E-value=3.3 Score=42.08 Aligned_cols=47 Identities=34% Similarity=0.657 Sum_probs=33.3
Q ss_pred EEEEEEeCCeeE-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011197 403 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 403 ~~fdl~~~G~gE-i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~ 471 (491)
--|++|.+|.++ |++|+ ||+.+.+.+ |. ..|..||++|+|||+.++.
T Consensus 266 ivFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~~AvGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 266 LIFEGYAPGLGAPIAGGG----RYDNLLGRF---GR---------------PLPATGFALNLERLLEALT 313 (314)
T ss_pred eEEEEEECCCCCcccCCc----cHHHHHHHc---CC---------------CCCCceEEecHHHHHHHhc
Confidence 358888887655 77776 455555444 21 2489999999999998764
No 186
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=74.83 E-value=14 Score=30.27 Aligned_cols=59 Identities=14% Similarity=0.254 Sum_probs=43.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
.+.|.|++++..+.=+|+.|+|.+| .+++.+.++.. .| -.. |..|+++-.+-.-.-+++
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG--~i~~tiH~~v~~~y--~~~--l~~GavLlLk~V~Vf~ps 65 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTG--EIRGTIHRKVLEEY--GDE--LSPGAVLLLKDVTVFSPS 65 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCC--cEEEEEeHHHHhhc--CCc--cccCEEEEEeeeeEEecC
Confidence 6899999998876678999999997 49999987642 12 123 888888888765444443
No 187
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=74.67 E-value=49 Score=30.31 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=53.0
Q ss_pred CCCcEEEEEEEEe--eeecC-C--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 27 ~~~~~V~v~G~V~--~~R~~-g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
..++.++|.|.|. ++... + .+.| .|.|+. .++.|....-.+. . .+-|.-|.|+|.+....
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~--~~v~V~Y~GilPD-----l--FrEG~gVVveG~~~~~g----- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAG--GSVTVTYEGILPD-----L--FREGQGIVAQGVLEEGN----- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCC--eEEEEEEcccCCc-----c--ccCCCeEEEEEEECCCC-----
Confidence 4689999999999 67554 4 3677 689996 4688877654331 2 77799999999996431
Q ss_pred EEEEEeeEEEEccCCCCC
Q 011197 102 VELKVNKIVLVGKSDPSY 119 (491)
Q Consensus 102 ~el~~~~i~ils~~~~~~ 119 (491)
.+.+ =+||.||+..|
T Consensus 120 -~F~A--~~vLAKhdekY 134 (160)
T PRK13165 120 -HIEA--KEVLAKHDENY 134 (160)
T ss_pred -eEEE--EEEEecCCCCC
Confidence 2233 36789998664
No 188
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=74.62 E-value=19 Score=28.32 Aligned_cols=47 Identities=13% Similarity=0.279 Sum_probs=34.2
Q ss_pred EEEEEEeeeecCCCeEEEEEE-cCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVN-DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~Lr-D~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (491)
.|.|+|.++.++| +|+++- ++ +...+..+...+. .. ++.|+.|.+.=
T Consensus 7 ~v~g~V~si~d~G--~~v~~g~~g-----v~Gfl~~~~~~~~--~~--~~~Gq~v~~~V 54 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDIGIPG-----TTGFLPKKDAGNF--SK--LKVGQLLLCVV 54 (74)
T ss_pred EEEEEEEEEeCCE--EEEEeCCCC-----cEEEEEHHHCCcc--cc--cCCCCEEEEEE
Confidence 5899999999999 899983 22 6677776543222 34 89999988873
No 189
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=74.18 E-value=26 Score=39.69 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=51.4
Q ss_pred CCCcEEEEEEEEeeeecC---CCeEEEEEEcCCCccceEEEEeC-CccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~---gkl~Fi~LrD~~g~~~iQvv~~~-~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
..|+.|+|.|.|.+.+.. +++.-+.+.|++| .+++++-. +.. |- .+. ++.|+.+.|.|++..... .+
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg--~i~l~~F~~n~~-~~-~~~--l~~G~~~~v~Gkv~~~~~---~~ 127 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTG--NLTLRFFNFNQP-YL-KKQ--LKVGKRVAVYGKVKRGKY---GL 127 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCe--EEEEEEEccCcH-HH-Hhh--CCCCCEEEEEEEEEecCC---eE
Confidence 357899999999887432 3567788899986 48887762 111 21 234 999999999999987322 34
Q ss_pred EEEEeeEEE
Q 011197 103 ELKVNKIVL 111 (491)
Q Consensus 103 el~~~~i~i 111 (491)
++.--++.+
T Consensus 128 qm~~P~~~~ 136 (681)
T PRK10917 128 EMVHPEYEV 136 (681)
T ss_pred EEEcCEEEe
Confidence 554444433
No 190
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=73.49 E-value=16 Score=38.52 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=53.2
Q ss_pred CcEEEEEEEEeee-ec-CCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEE
Q 011197 29 GLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (491)
Q Consensus 29 ~~~V~v~G~V~~~-R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~ 105 (491)
...++|.|+|... +. -|+..|+.+.|+.| .|-+++-.-...| +.+.. |.+||.|.+.|.++... |.
T Consensus 266 ~~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n 334 (421)
T COG1571 266 YSKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LN 334 (421)
T ss_pred ccceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------ee
Confidence 3457899998876 33 58899999999986 4777776543333 33566 99999999999987643 55
Q ss_pred EeeEEEEc
Q 011197 106 VNKIVLVG 113 (491)
Q Consensus 106 ~~~i~ils 113 (491)
+++++|+.
T Consensus 335 ~ek~~v~~ 342 (421)
T COG1571 335 LEKFQVLK 342 (421)
T ss_pred EEEEEEEE
Confidence 55665543
No 191
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=73.43 E-value=57 Score=29.86 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=53.5
Q ss_pred CCCcEEEEEEEEe--eeecC-C--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 27 ~~~~~V~v~G~V~--~~R~~-g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
..++.++|.|.|. ++... + .+.| .|.|+. .+|.|....-.+. . .+-|.-|.|+|.+....
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-----l--FrEG~gVVveG~~~~~g----- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAE--GSVTVSYEGILPD-----L--FREGQGVVVQGTLEKGN----- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCC--cEEEEEEeccCCc-----c--ccCCCeEEEEEEECCCC-----
Confidence 4689999999999 77554 3 4677 689987 4688887754431 2 77899999999996431
Q ss_pred EEEEEeeEEEEccCCCCC
Q 011197 102 VELKVNKIVLVGKSDPSY 119 (491)
Q Consensus 102 ~el~~~~i~ils~~~~~~ 119 (491)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~evLAKhdekY 134 (159)
T PRK13150 120 -HVLA--HEVLAKHDENY 134 (159)
T ss_pred -EEEE--eEEEeCCCCCC
Confidence 2233 36789998664
No 192
>COG3689 Predicted membrane protein [Function unknown]
Probab=73.30 E-value=15 Score=36.10 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=57.6
Q ss_pred cCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc----hhhhhhcCCCCCcEEEEEEEEEecCC-
Q 011197 23 EGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG----YDQVKSGLITTGASIWIQGNVVPSQG- 97 (491)
Q Consensus 23 ~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~----~~~~~~~~L~~gd~V~V~G~v~~~~~- 97 (491)
...+..|++|.+.|.|-+=-..++-.++..|=+ . +=|++++...+ .+.... ++.-++|.|+|++....-
T Consensus 169 ~pdef~Gk~Ie~tGFVy~~~~~~~N~lflaRFg--i--icC~ADa~vygl~v~~~~~~~--y~ndtWltvkGtl~~e~~~ 242 (271)
T COG3689 169 YPDEFAGKKIEFTGFVYNDESFPKNYLFLARFG--I--ICCAADAGVYGLLVELDNQTD--YKNDTWLTVKGTLSSEYLS 242 (271)
T ss_pred CchhhcCceEEEEEEEECCCCCCcceeehhhhh--e--eeeeccceeEEEEEEcccccc--CCCCceEEEEeEEEeeecC
Confidence 355789999999999988544444444445533 2 44555554311 122234 899999999999986532
Q ss_pred --CceeEEEEEeeEEEEccCC
Q 011197 98 --SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 98 --~~~~~el~~~~i~ils~~~ 116 (491)
+..-..|+|++++++.+..
T Consensus 243 ~~~~~ipvi~v~sv~~I~kP~ 263 (271)
T COG3689 243 DFKKRIPVIEVDSVEVIPKPA 263 (271)
T ss_pred chhhcCcEEEeeeeeecCCCC
Confidence 1235788999998887754
No 193
>PRK06386 replication factor A; Reviewed
Probab=71.73 E-value=48 Score=34.51 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=56.4
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeec-------C-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~-------~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
.+|+||.. ....|.|.|+|..+=. . +.+.=+.|-|.|| +|.+++..+ . |..|
T Consensus 108 ~KI~DL~~--------g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTG--rIr~TlW~~--------~--l~eG 167 (358)
T PRK06386 108 VKIRDLSL--------VTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTA--RVRISSFGK--------P--LEDN 167 (358)
T ss_pred cEeEeccC--------CCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCC--eEEEEEccc--------c--ccCC
Confidence 45666643 3455788888876511 1 2344445566664 366655432 4 8999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCC
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~ 119 (491)
|+|.|.+..+..-. +.+||.+.+...+.+.+.+.
T Consensus 168 d~v~i~na~v~e~~--G~~el~v~~~t~I~~~~~~i 201 (358)
T PRK06386 168 RFVRIENARVSQYN--GYIEISVGNKSVIKEVESDI 201 (358)
T ss_pred CEEEEeeeEEEccC--CeEEEEeCCeEEEEECCCCc
Confidence 99999998866654 47999999998887765433
No 194
>PRK07218 replication factor A; Provisional
Probab=71.68 E-value=42 Score=35.77 Aligned_cols=77 Identities=19% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCcEEEEEEEEeee--e-----cC-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCc
Q 011197 28 VGLMIVVAGWVRTL--R-----AQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (491)
Q Consensus 28 ~~~~V~v~G~V~~~--R-----~~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~ 99 (491)
.+..|+|.|+|.++ | +. +.+.=..|-|.|| +|.+++..+. .. |..||+|.|.+-.++.-.+
T Consensus 171 g~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG--~Ir~tlW~~~------~~--l~~Gd~v~I~na~v~e~~G- 239 (423)
T PRK07218 171 GDRGVNVEARVLELEHREIDGRDGETTILSGVLADETG--RLPFTDWDPL------PE--IEIGASIRIEDAYVREFRG- 239 (423)
T ss_pred CCCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCc--eEEEEEeccc------cc--CCCCCEEEEeeeEEeccCC-
Confidence 34558999999876 2 11 2233345778875 4788777642 24 8999999999988776544
Q ss_pred eeEEEEEeeEEEEccCC
Q 011197 100 QKVELKVNKIVLVGKSD 116 (491)
Q Consensus 100 ~~~el~~~~i~ils~~~ 116 (491)
.+||.+.+-.-+...+
T Consensus 240 -~~elnv~~~t~I~~~d 255 (423)
T PRK07218 240 -VPSVNVSEFTTVEALD 255 (423)
T ss_pred -eEEEEECCceEEEECC
Confidence 7999998666555544
No 195
>PLN02734 glycyl-tRNA synthetase
Probab=70.63 E-value=1.6 Score=48.88 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHh-hCCcEEeecceeeccCC
Q 011197 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDC 180 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~ 180 (491)
--.+++.|++.-|++|. +.+.+||+||+|++...
T Consensus 108 G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V 142 (684)
T PLN02734 108 GCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVV 142 (684)
T ss_pred hHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhH
Confidence 34567888999999884 55677999999988653
No 196
>PRK02801 primosomal replication protein N; Provisional
Probab=70.14 E-value=19 Score=30.25 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=33.6
Q ss_pred eEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEe--cCCCceeEEEEEeeEEEE
Q 011197 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP--SQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~--~~~~~~~~el~~~~i~il 112 (491)
|+||+-.+.. +.+ +. |..|+-|.|+|.+.. ++.+...+.|+++.++.+
T Consensus 50 i~~va~G~~A--e~~~~~--l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQF--QAITQS--ITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHH--HHHHhh--cCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 7787765432 222 25 999999999999986 333434567899888865
No 197
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=70.09 E-value=6.5 Score=41.91 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.2
Q ss_pred CCccceeccHHHHHHHHcC
Q 011197 454 VPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g 472 (491)
-|..||++|+|||++++..
T Consensus 299 ~PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 299 TPAVGCAIGLERLLLIAKD 317 (430)
T ss_pred CCeeEEEecHHHHHHHHhc
Confidence 3777999999999998854
No 198
>PRK12366 replication factor A; Reviewed
Probab=70.06 E-value=21 Score=40.19 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=58.4
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---e----c---CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R----~---~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
-++|++|... ...|++.|||.++ | . -|++.=+.|-|.+| +|.+++..+...+ ... |
T Consensus 63 ~~~I~dl~p~--------~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG--~Ir~t~W~~~~~~--~~~--l 128 (637)
T PRK12366 63 DFKISDIEEG--------QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTG--TIRLTLWNDNAKL--LKG--L 128 (637)
T ss_pred eeEHHHCcCC--------CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCC--EEEEEEEchhhhh--hcc--C
Confidence 4577777642 3569999999765 3 1 25688889999997 5999998764322 345 9
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
..|+++.|.|-..+.-. +.+||....
T Consensus 129 e~G~v~~i~~~~v~~~~--~~~el~~~~ 154 (637)
T PRK12366 129 KEGDVIKIENARSRKWN--NDVELNSGS 154 (637)
T ss_pred CCCCEEEEeccEecccC--CceEEEcCC
Confidence 99999999987665433 357877654
No 199
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=69.86 E-value=1.5 Score=48.07 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHh-hCCcEEeecceeeccCC
Q 011197 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDC 180 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~ 180 (491)
-..++..|++..|++|. +.+++||+||+|++...
T Consensus 36 G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v 70 (551)
T TIGR00389 36 GAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEV 70 (551)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHH
Confidence 46778899999999994 77899999999998553
No 200
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=69.07 E-value=28 Score=38.40 Aligned_cols=116 Identities=10% Similarity=0.109 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecceeeccC-C-CCC---CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 149 RVRNALAYATHKFFQENGFIWISSPIITASD-C-EGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~-~-eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
.....+.+.+|++|...||.|+-|-.+++.. . +.. .+.+ +.-.||- +.+
T Consensus 362 ~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~-v~l~NPi----------------------s~e--- 415 (551)
T TIGR00471 362 KPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNND-VKVANPK----------------------TLE--- 415 (551)
T ss_pred ChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCc-EEeCCCC----------------------chh---
Confidence 3456677889999999999999999998852 1 110 0000 2222220 011
Q ss_pred cccccccchhhHH-HHHhc---cC--CceEEEccccccCCCCCCcccccccceeeEecc--CCHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNA-ETYAT---AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQL 292 (491)
Q Consensus 224 ~~~~L~~Spql~l-ql~~~---g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~ 292 (491)
--+|+.|-=--+ +.+.. +. -|+||||++|..++. +..+-.++.++-+-.+. .|+.++...+|.++..
T Consensus 416 -~s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~ 490 (551)
T TIGR00471 416 -YTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDK-SETRSRVVTKLAVGITHSEANFNEIKSIVAALARE 490 (551)
T ss_pred -hhHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCc-cccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 123555433332 33222 22 279999999965422 11233455677666654 3788888888887766
No 201
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=67.68 E-value=5.5 Score=39.98 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=30.7
Q ss_pred EEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011197 403 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 403 ~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~ 471 (491)
--|+.|.+|. .|++|+.-- + .--|..|||+|+|||+.+|.
T Consensus 241 ivFe~~~~~~-~i~~GGRYD-------------~---------------~~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 241 LFFRFFDGNS-TLASGGNYE-------------I---------------DGISSSGFALYTDNLIEILL 280 (281)
T ss_pred eEEEEEECCc-eeccccCCC-------------C---------------CCCCcceEEeeHHHHHHHhh
Confidence 4699999885 899998543 0 11389999999999998875
No 202
>PRK07211 replication factor A; Reviewed
Probab=65.53 E-value=37 Score=36.74 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=56.4
Q ss_pred CcEEEEEEEEeee---e----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE-EEEecCC
Q 011197 29 GLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQG 97 (491)
Q Consensus 29 ~~~V~v~G~V~~~---R----~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G-~v~~~~~ 97 (491)
+..|.|.|+|.++ | .. |++.=+.|-|.+| +|.+.+..+... .+.. |..|++|.|.| .+....
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG--~IR~TlW~d~Ad--~~~~--le~G~Vv~I~~a~Vre~~- 243 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETG--RVRVTLWDDRAD--LAEE--LDAGESVEIVDGYVRERD- 243 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCC--eEEEEEechhhh--hhcc--CCCCCEEEEEeeEEEecC-
Confidence 4668999999854 2 22 4677788999997 499999876421 1234 89999999985 454432
Q ss_pred CceeEEEEEeeEEEEccCC
Q 011197 98 SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 98 ~~~~~el~~~~i~ils~~~ 116 (491)
+.+||.+.+-..+.++.
T Consensus 244 --g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 244 --GSLELHVGDRGAVEEVD 260 (485)
T ss_pred --CcEEEEECCCceEEECC
Confidence 47999988777777764
No 203
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=64.12 E-value=21 Score=42.05 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=49.5
Q ss_pred CCcEEEEEEEEeeeecC---C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC
Q 011197 28 VGLMIVVAGWVRTLRAQ---S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~---g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~ 96 (491)
.++.|+|.|.|.++|.. | .++|+.|.|.+| .+.+++-++ .|+..+. |..++++.|+|+..++.
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~--~~e~~~F~~--~~~~~~~--l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSV--EITIFVNDN--DYLLFET--LKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCC--cEEEEEcHH--HHHHHHH--hhcCCEEEEEEEEcCCC
Confidence 35678999999987642 3 599999999996 499988764 3555656 88899999999887654
No 204
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=64.07 E-value=1.1e+02 Score=27.62 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=57.5
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEee--eec--CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRT--LRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~--~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~ 87 (491)
.+..|+... ....++.|+|.|.|.. +.. .+.+.| .|.|+. ..|.|..+...+. . .+-|.-|-
T Consensus 38 ~tpse~~~~----~~~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~--~~i~V~Y~G~lPd-----~--F~eg~~VV 103 (148)
T PRK13254 38 YTPSEVAEG----EAPAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGN--ATVPVVYTGILPD-----L--FREGQGVV 103 (148)
T ss_pred eCHHHHhcC----CccCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCC--eEEEEEECCCCCc-----c--ccCCCEEE
Confidence 344555443 1257999999999964 533 356788 579986 4688888754431 2 77899999
Q ss_pred EEEEEEecCCCceeEEEEEeeEEEEccCCCCC
Q 011197 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (491)
Q Consensus 88 V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~ 119 (491)
|+|.+... + ..+++ +||.||+..|
T Consensus 104 v~G~~~~~--g----~F~A~--~vLaKc~skY 127 (148)
T PRK13254 104 AEGRLQDG--G----VFVAD--EVLAKHDENY 127 (148)
T ss_pred EEEEECCC--C----eEEEE--EEEecCCCCC
Confidence 99998532 1 23443 6788887654
No 205
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.43 E-value=46 Score=37.57 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=33.4
Q ss_pred hccCCceEEEccccccCCC--------CCCcccccccceeeEeccCCH--HHHHHHHHHHHHH
Q 011197 240 ATALSNVYTFGPTFRAENS--------NTSRHLAEFWMIEPELAFADL--KDDMACATAYLQL 292 (491)
Q Consensus 240 ~~g~~rvfeI~~~FR~E~~--------~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li~~ 292 (491)
.+.+.|+...-+|-|+.+- .+..|..=|-||== ++|.|| ++.+..+=+|+..
T Consensus 54 ~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~yHhTfFEMlGN-WSFGdYfK~Eac~~AwelLt~ 115 (895)
T KOG0188|consen 54 MAKLKRAANSQKCIRAGGKHNDLDDVGKDFYHHTFFEMLGN-WSFGDYFKEEACAWAWELLTF 115 (895)
T ss_pred hhhhHhhhhhhhHHhccCCcCChhHhchhccccCchhhcCC-CCcchHHHHHHHHHHHHHHHH
Confidence 4567899999999999742 23456667777643 466664 4555555555444
No 206
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=62.32 E-value=30 Score=38.57 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecceeeccCC--CCCC------CceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 150 VRNALAYATHKFFQENGFIWISSPIITASDC--EGAG------EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 150 ~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg~~------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
...++.+.+|+.|...||.||-|-.|++..- +... +. +.-.||- +.+|
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~--v~I~NP~----------------------s~e~ 453 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSA--VIIGNPR----------------------SADF 453 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCce--EEECCCc----------------------chhH
Confidence 3466777899999999999999999987521 1000 11 2222320 0111
Q ss_pred cCcccccccchhhHH-HHHhccC-----CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNA-ETYATAL-----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 222 f~~~~~L~~Spql~l-ql~~~g~-----~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
.+|++|-=--| +.+.... -|+||||++|-.+.. ..+...|-.+|=+-.+.. ++.++-.+++.++..
T Consensus 454 ----~vlRtSLlPgLL~~l~~N~~~~~p~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~ 527 (597)
T PLN02265 454 ----EVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEV 527 (597)
T ss_pred ----HHHHHhhHHHHHHHHHHhhcCCCCeeEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHH
Confidence 13555533333 4333332 279999999954321 111112444554444443 688877777776655
No 207
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.12 E-value=50 Score=36.92 Aligned_cols=92 Identities=12% Similarity=0.211 Sum_probs=63.3
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLI 80 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L 80 (491)
-+.|++|... ....+|+|||.++ |. .|++.-++|.|.+| .|++.+..+.. .| ... |
T Consensus 180 ~~pI~~L~py--------~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~dkf--~~~--l 245 (608)
T TIGR00617 180 VMPIASLSPY--------QNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQADKF--YDI--I 245 (608)
T ss_pred eEEHHHCCCC--------CCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHHHHH--hhh--c
Confidence 3577777653 2348999999763 32 26788889999664 69998887632 22 124 9
Q ss_pred CCCcEEEEEE-EEEecCC----CceeEEEEEeeEEEEccCC
Q 011197 81 TTGASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 81 ~~gd~V~V~G-~v~~~~~----~~~~~el~~~~i~ils~~~ 116 (491)
..|+++.+++ .|+.... ...++||...+-+++.+|.
T Consensus 246 ~eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 246 QEGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred ccCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEECC
Confidence 9999999974 5655432 1246899998888888775
No 208
>PRK08402 replication factor A; Reviewed
Probab=59.37 E-value=52 Score=34.23 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=55.8
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeee---ec----C---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA----Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~----~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.+|+||.. ..+.|.+.|+|.++ |. . |++.=+.|-|.|| ++.+.+..+... +.+.. |.
T Consensus 63 ~kI~dl~~--------g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG--~ir~TlW~~~a~-~~~~~--l~ 129 (355)
T PRK08402 63 MHISDLVP--------GMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTG--RARVVLWDAKVA-KYYNK--IN 129 (355)
T ss_pred cCHHHccC--------CCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCC--eEEEEEechhhh-hhccc--CC
Confidence 55777753 33679999999986 31 2 2344488999997 488888865421 01234 89
Q ss_pred CCcEEEEEEEEEe-cCCCceeEEEEEeeEEEE
Q 011197 82 TGASIWIQGNVVP-SQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 82 ~gd~V~V~G~v~~-~~~~~~~~el~~~~i~il 112 (491)
.||+|.|.|--++ ...+ ..||.+.+-..+
T Consensus 130 ~Gdvi~I~~a~V~e~~~G--~~eLsvg~~s~i 159 (355)
T PRK08402 130 VGDVIKVIDAQVRESLSG--LPELHINFRARI 159 (355)
T ss_pred CCCEEEEECCEEeecCCC--cEEEEECCCceE
Confidence 9999999864444 3233 468888655433
No 209
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=58.13 E-value=69 Score=31.23 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhh-----CCcEEeecceeeccCCCC-----CC-CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 152 NALAYATHKFFQE-----NGFIWISSPIITASDCEG-----AG-EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 152 s~i~~~iR~ff~~-----~~F~EV~TPiL~~~~~eg-----~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.+.|..++++|.. .+.+.|..|+++....+= +- ++ |+...+ +
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~Erp--VsF~~k-------------------------~ 59 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERP--VSFDIK-------------------------D 59 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST------EE--T-------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEee--EEEEcc-------------------------C
Confidence 5667777777754 799999999999865431 11 12 111100 0
Q ss_pred ccCcccccccchhhHHHHHhc--cC---CceEEEccccc-cCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQL 292 (491)
Q Consensus 221 ~f~~~~~L~~Spql~lql~~~--g~---~rvfeI~~~FR-~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (491)
.=+..+-..+|--=|+|+... ++ +-+|+=..+.| .|+.-+..|.-=.-|-|||.....-+--++...+.++.
T Consensus 60 ~~~~~~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~ 137 (244)
T PF03590_consen 60 IPDETAEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRK 137 (244)
T ss_dssp STT--EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHH
T ss_pred CCCceeeeehhHHHHHHHHHHHcCCCCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHH
Confidence 003333455666667775443 55 57999999999 87644799999999999999976444444444444444
No 210
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=57.67 E-value=62 Score=36.33 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=44.7
Q ss_pred CCCcEEEEEEEEeeeec----CCCeEEEEEEc-CCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC
Q 011197 27 RVGLMIVVAGWVRTLRA----QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~----~gkl~Fi~LrD-~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~ 96 (491)
..|+.++|.|.|.+... .+++.-+.+.| +++ .+++++-... |- .+. ++.|+.+.|.|++....
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~F~~~--~~-~~~--~~~g~~~~~~Gk~~~~~ 97 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYK--KLELRFFNRA--FL-KKK--FKVGSKVVVYGKVKSSK 97 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCC--EEEEEEECCH--HH-Hhh--CCCCCEEEEEEEEEeeC
Confidence 35788999999876421 13456678899 875 4888776422 21 234 99999999999998753
No 211
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=53.68 E-value=1.4e+02 Score=27.00 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=26.3
Q ss_pred CCCCcEEEEEEEEEecC----CCc--eeEEEEEeeE----EEEccC
Q 011197 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKI----VLVGKS 115 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~~--~~~el~~~~i----~ils~~ 115 (491)
|+.||.|.|+|.+..+. .+. ...||.|+++ .+|+..
T Consensus 72 l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 72 VTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred CCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 99999999999998652 222 2578888876 666643
No 212
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=53.55 E-value=1.1e+02 Score=24.24 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=38.8
Q ss_pred EEEEEeeeecCC-CeEEEEEEcCCCc------cceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 34 VAGWVRTLRAQS-SVTFIEVNDGSCL------SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 34 v~G~V~~~R~~g-kl~Fi~LrD~~g~------~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
|.|.|....... .-.|. |+|..+- .-|=|...+ ... +..||.|.|+|++..-.. ..+|..
T Consensus 2 v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-------~~~--~~~Gd~V~vtG~v~ey~g---~tql~~ 68 (78)
T cd04486 2 VEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-------GAD--VAVGDLVRVTGTVTEYYG---LTQLTA 68 (78)
T ss_pred eEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-------CCC--CCCCCEEEEEEEEEeeCC---eEEEcc
Confidence 678888887642 23455 7776210 112121111 124 999999999999988653 355655
Q ss_pred ee-EEEEc
Q 011197 107 NK-IVLVG 113 (491)
Q Consensus 107 ~~-i~ils 113 (491)
.. +++++
T Consensus 69 ~~~~~~~~ 76 (78)
T cd04486 69 VSAIEVLG 76 (78)
T ss_pred CCceEEec
Confidence 43 55543
No 213
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=53.40 E-value=1.5e+02 Score=28.57 Aligned_cols=82 Identities=9% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCCcEEEEEEEEee---eec-CCCeEEEEE-------EcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEec
Q 011197 27 RVGLMIVVAGWVRT---LRA-QSSVTFIEV-------NDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (491)
Q Consensus 27 ~~~~~V~v~G~V~~---~R~-~gkl~Fi~L-------rD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~ 95 (491)
..+..|.|.|++.+ .|. ..+-.|... ++.+. -|.|++...... ... |..|+.|.|+|.+..=
T Consensus 6 ~~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D--~i~v~v~~rlae---~~~--l~kG~~v~VeGqlrsy 78 (219)
T PRK05813 6 MENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKD--ILPVTVSERLLA---GMD--LKVGTLVIVEGQLRSY 78 (219)
T ss_pred hhcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCcc--EEEEEEEhhhhh---hhc--ccCCCEEEEEEEEEEe
Confidence 45678999999987 343 223333322 35553 488888765421 234 9999999999999821
Q ss_pred --C-CC--ceeEEEEEeeEEEEccC
Q 011197 96 --Q-GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 96 --~-~~--~~~~el~~~~i~ils~~ 115 (491)
. .+ .--+||.|.+++.|.+.
T Consensus 79 ~~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 79 NKFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred ccCCCCcEEEEEEEEEEEEEEccCC
Confidence 1 12 12589999999988775
No 214
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=53.16 E-value=35 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEE
Q 011197 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLV 112 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~il 112 (491)
|..||.|.|+|.+.... .+ ...++|.|++|++|
T Consensus 66 l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 66 LKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp --TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 99999999999987542 22 23689999999875
No 215
>PRK04036 DNA polymerase II small subunit; Validated
Probab=51.91 E-value=49 Score=36.11 Aligned_cols=62 Identities=16% Similarity=0.324 Sum_probs=44.6
Q ss_pred CCcEEEEEEEEeeeecC--CCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCCcEEEEEEEEEe
Q 011197 28 VGLMIVVAGWVRTLRAQ--SSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVP 94 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~gd~V~V~G~v~~ 94 (491)
.++++.|.|-|..+|.- |. ..+.|-|.+| ++++++.++...+ +.... |-+|.+|.|.|....
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~-~~~~LED~sg--rv~l~~~~~~~~~~~~~~~--lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGH-KIVELEDTTG--TFPVLIMKDREDLAELADE--LLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCc-eEEEEECCCC--eEEEEeecchhhhhhhhhc--ccCceEEEEEEEEcC
Confidence 56789999999999853 33 2367999996 5999986543212 22234 889999999998654
No 216
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=51.56 E-value=11 Score=37.15 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=38.6
Q ss_pred CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011197 400 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 478 (491)
Q Consensus 400 ~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Ird 478 (491)
...-.+|+.++|| ||.-= + | |.. .|++ --|.++=+.-|+|||.|.+-|.+||-|
T Consensus 120 AwGlGWEVWldGM-EITQf----T-Y------FQQvGGi~-------------~~pv~~EITYGLERiamylQ~vdnv~d 174 (284)
T PF02091_consen 120 AWGLGWEVWLDGM-EITQF----T-Y------FQQVGGID-------------CKPVSVEITYGLERIAMYLQGVDNVYD 174 (284)
T ss_dssp EEEEEEEEEETTC-EEEEE----E-E------EEEETTEE--------------SS--EEEEEEHHHHHHHHCT-SSGGG
T ss_pred ccccccEEEECCE-EEEEe----e-e------eeeeCCcc-------------ccccceehhhhHHHHHHHHhCCCeeEe
Confidence 3567899999999 98621 0 0 001 1222 136677799999999999999999999
Q ss_pred ccc
Q 011197 479 AIP 481 (491)
Q Consensus 479 vi~ 481 (491)
++.
T Consensus 175 l~w 177 (284)
T PF02091_consen 175 LIW 177 (284)
T ss_dssp SEE
T ss_pred eee
Confidence 875
No 217
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.00 E-value=19 Score=27.50 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhCCcEEee
Q 011197 149 RVRNALAYATHKFFQENGFIWIS 171 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~~F~EV~ 171 (491)
+.|.+|++.||+||...|=++|-
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 46899999999999999987763
No 218
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.85 E-value=3.5 Score=43.70 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=0.0
Q ss_pred EEccccccCCCCCCc----ccccccceeeE
Q 011197 248 TFGPTFRAENSNTSR----HLAEFWMIEPE 273 (491)
Q Consensus 248 eI~~~FR~E~~~t~r----Hl~EFtmlE~e 273 (491)
+||++|||| + ++| +--||||.|+|
T Consensus 214 qiG~~fRNE-I-SpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNE-I-SPRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhc-c-CcccCceeEEEeehHHhh
No 219
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=50.26 E-value=52 Score=26.62 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=34.2
Q ss_pred cceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC----C--ceeEEEEEeeEEEE
Q 011197 59 SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLV 112 (491)
Q Consensus 59 ~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~----~--~~~~el~~~~i~il 112 (491)
..++|.+..+... ...+. ++.||.|.|+|.+....- + ...++|.++++.++
T Consensus 44 ~~~~v~~~g~~a~-~~~~~--~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 44 DWIRVVAFGKLAE-NAAKY--LKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEEhHHHH-HHHHH--hCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 3477877654211 12446 999999999999976531 1 24688888887753
No 220
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=49.56 E-value=1.1e+02 Score=23.31 Aligned_cols=50 Identities=8% Similarity=0.138 Sum_probs=33.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc---hhh-hhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ-VKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~---~~~-~~~~~L~~gd~V~V~ 89 (491)
.+.|.|.++...| +|++|.+..+ +...+..+... +.. -.. ++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g--~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~~--~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG--AYVSLLEYGN---IEGMILLSELSRRRIRSIRKL--VKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE--EEEEEcCCCC---eEEEEEhHHcCCcccCCHHHe--eCCCCEEEEE
Confidence 5689999998876 8999987532 56666654311 111 123 7899998886
No 221
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=48.26 E-value=40 Score=28.71 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEEEEecC----CCc--eeEEEEEeeEEEEccC
Q 011197 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~~--~~~el~~~~i~ils~~ 115 (491)
|..||-|.|+|.+..+. .+. ..+||.|+++.+|++.
T Consensus 65 l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 65 CTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 99999999999998653 121 2589999999998764
No 222
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=47.98 E-value=1e+02 Score=26.97 Aligned_cols=62 Identities=21% Similarity=0.401 Sum_probs=38.5
Q ss_pred CcEEEEEEEEeeeecC-C-CeEEEE-E----EcC---CCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 29 GLMIVVAGWVRTLRAQ-S-SVTFIE-V----NDG---SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~~-g-kl~Fi~-L----rD~---~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
++.+++.|.|.+.... + ...|.. + ..+ ....++++..+++.. .. +..||.|.++|++.....
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~--l~~Gd~i~~~g~l~~~~~ 146 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ-----PR--LQPGDRIRVRGKLKPPSG 146 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc-----cc--cCCCCEEEEEEEEecCCC
Confidence 7889999999888553 3 222332 1 111 011246666655432 14 899999999999987644
No 223
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=47.90 E-value=13 Score=36.43 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=41.0
Q ss_pred ceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011197 401 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 401 ~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdv 479 (491)
..-.+|+.++|| ||.- +. -|.. .|++ --|..+=+.-|+|||.|.+-|.+||-|+
T Consensus 122 wGLGWEVWldGM-EITQ-------FT----YFQQvGGi~-------------~~pv~~EiTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 122 WGLGWEVWLDGM-EVTQ-------FT----YFQQVGGIP-------------CKPISVEITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred cccccEEEECCe-eeee-------ee----eeeeeCCee-------------ccccceeeehhHHHHHHHHhCCCceecc
Confidence 456899999999 9862 11 1111 2333 1367777999999999999999999998
Q ss_pred ccc
Q 011197 480 IPF 482 (491)
Q Consensus 480 i~F 482 (491)
..=
T Consensus 177 ~w~ 179 (279)
T cd00733 177 EWN 179 (279)
T ss_pred ccC
Confidence 653
No 224
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=47.76 E-value=13 Score=36.51 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=41.2
Q ss_pred ceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011197 401 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480 (491)
Q Consensus 401 ~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi 480 (491)
..-.+|+.++|| ||.- - +|=++ -.|++ --|..+=+.-|+|||.|.+-|.+||-|+.
T Consensus 126 wGlGWEVWldGM-EITQ----F-TYFQQ-----vGGi~-------------~~pv~~EITYGLERiamylQ~vd~v~dl~ 181 (283)
T PRK09348 126 WGLGWEVWLDGM-EVTQ----F-TYFQQ-----VGGIE-------------CKPVTGEITYGLERLAMYLQGVDNVYDLV 181 (283)
T ss_pred cccceEEEECCe-eeee----e-eeeee-----eCCee-------------ccccceeeehhHHHHHHHHhCCCceeeee
Confidence 456899999999 9862 1 11111 02333 13677779999999999999999999987
Q ss_pred cc
Q 011197 481 PF 482 (491)
Q Consensus 481 ~F 482 (491)
.=
T Consensus 182 w~ 183 (283)
T PRK09348 182 WN 183 (283)
T ss_pred cC
Confidence 54
No 225
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=46.60 E-value=1.2e+02 Score=22.70 Aligned_cols=48 Identities=6% Similarity=0.190 Sum_probs=33.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc----hhhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG----YDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~----~~~~~~~~L~~gd~V~V~ 89 (491)
.+.|+|.++.+.| +|+.|-++ ++.+++.+... .+.-.. ++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~--~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG--CIVSFYNN-----VKGFLPKSELSEAFIKDPEEH--FRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc--EEEEECCC-----CEEEEEHHHcChhhcCCHHHc--ccCCCEEEEE
Confidence 4789999998877 89998543 67777764321 111223 8899999987
No 226
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=45.68 E-value=1.4e+02 Score=24.91 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=41.8
Q ss_pred eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEc
Q 011197 47 VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (491)
Q Consensus 47 l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils 113 (491)
.-=+.|+||. ..+|.++....- ..+.+|.|+.|++|.+.-....+-.. +.--|.+.+++|+.
T Consensus 39 RyR~~lSDG~--~~~~amLatqln--~lv~~g~l~~~siirl~~y~~n~v~~-~k~iiiil~leVv~ 100 (101)
T PF04057_consen 39 RYRLVLSDGV--HSIQAMLATQLN--HLVESGELQKGSIIRLKQYTCNTVKN-GKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEEESSS--EEEEEEESGGGH--HHHHTTSSSTT-EEEEEEEEEEESTT-SSEEEEEEEEEEEE
T ss_pred eEEEEEEChH--HHHHHHhHHHhH--HHHhcCCcccCCEEEEeEEEEeeccC-CCEEEEEEeeEEEe
Confidence 3447799998 459998886542 22455669999999999877765441 13347777777764
No 227
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=45.57 E-value=41 Score=31.51 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=29.4
Q ss_pred CCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccCC
Q 011197 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~~ 116 (491)
|+.|+-|.|+|.+..+. .+ ...+||.|++|.+|++..
T Consensus 67 l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 67 LSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCCC
Confidence 99999999999998642 12 236899999999997653
No 228
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=45.38 E-value=61 Score=31.55 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=33.4
Q ss_pred CCceEEEccccccCC----CCCCcccccccceeeEeccCCH--HHHHHHHHHHHHH
Q 011197 243 LSNVYTFGPTFRAEN----SNTSRHLAEFWMIEPELAFADL--KDDMACATAYLQL 292 (491)
Q Consensus 243 ~~rvfeI~~~FR~E~----~~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li~~ 292 (491)
..|+-..-+|.|.-+ ..|.||+.=|.|| .-.+|.|| ++.+..+=+|+..
T Consensus 55 ~~r~~~~QkCiR~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~ 109 (232)
T cd00673 55 ANRLVNSQKCIRAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTE 109 (232)
T ss_pred CCceeeeeeceecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHh
Confidence 367888889999643 2478999999999 44667675 5555555554444
No 229
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=44.56 E-value=23 Score=38.48 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=34.3
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEec--cCCHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELA--FADLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~--~~~~~~lm~~~e~li~~ 292 (491)
|+||||+|||.+.....+|+..+.+..+-.. -.|+.++...++.|+..
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~ 259 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQ 259 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHH
Confidence 7999999998863224567777766642221 23789999999998876
No 230
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=42.75 E-value=2.7e+02 Score=25.45 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=56.5
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEe--eeecC-C--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~--~~R~~-g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V 86 (491)
.+..|+... ....++.+++.|.|. ++.+. + .+.| .+.|+. ..+.|..+.-.++ +.+-|.-|
T Consensus 38 ~tpsEv~~~----~~~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEGqgV 103 (155)
T PRK13159 38 FTPSQVRAG----AAAGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKN--AATQVEYTGILPD-------LFRDNQSV 103 (155)
T ss_pred ECHHHHhcC----CcccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCC--cEEEEEEccCCCc-------cccCCCeE
Confidence 344555442 234579999999999 77554 3 4677 578986 4688877754331 26779999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCCC
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~ 119 (491)
-++|.+. . + ..++ =+||.||+..|
T Consensus 104 VaeG~~~--~-g----~F~A--~~vLAKHde~Y 127 (155)
T PRK13159 104 IANGRMQ--G-G----RFVA--NEVLAKHDETY 127 (155)
T ss_pred EEEEEEc--C-C----EEEE--eEEEecCCCcC
Confidence 9999986 1 2 2333 36788998664
No 231
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=41.94 E-value=23 Score=38.48 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=26.4
Q ss_pred CccceeccHHHHHHHHcCCCCcccc--cccCCCCC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDA--IPFPRTPG 487 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdv--i~FPr~~~ 487 (491)
|...|+|++|||+|...+.++||+. -+||+.|.
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFPa 351 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWEL 351 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCCC
Confidence 5678999999999999998999984 35555554
No 232
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=41.79 E-value=53 Score=30.35 Aligned_cols=52 Identities=10% Similarity=0.280 Sum_probs=35.4
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CCc--eeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~~--~~~el~~~~i~ils~~ 115 (491)
+.|++-.....+ ..+. |+.||-|.|+|.+.... .+. ..+||.+++|++|+..
T Consensus 54 ~~Vv~fgk~AE~-v~~~--LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 54 HRIVFYRRQAEV-AGEY--LRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEhHHHHH-HHHH--CCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 566665432111 1345 99999999999998652 221 3689999999998754
No 233
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=41.77 E-value=16 Score=35.00 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.9
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdv 479 (491)
|...+.|++|+|+|+.-|.++||..
T Consensus 188 ~v~~~Eidl~~l~~~~~~~~~~~~~ 212 (218)
T cd00496 188 SGFAFGIGLERLAMLKYGIPDIRLF 212 (218)
T ss_pred eEEEEEecHHHHHHHHhCCcHHHHH
Confidence 4467899999999999999999963
No 234
>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB3 has a pronounced groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for strong ssDNA binding []. ; PDB: 1IYJ_D 1MIU_A.
Probab=41.55 E-value=2.7e+02 Score=25.10 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=49.0
Q ss_pred CCcEEEEEEEEeeeecCCCe-EEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl-~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
.=.+|=+.|-|.++.+..++ .-+-|.|... +-+.|.+..+...|..-.. |++|.+|.++-.--++.+..+=-.+.|
T Consensus 17 p~~EvD~VG~VvsV~~~~~f~~~vYLsD~~~-Nll~Ikfw~~l~~~~~eDi--lk~~~liA~SNLqwR~~s~s~iP~~~A 93 (143)
T PF09104_consen 17 PYGEVDTVGFVVSVSKKQGFQPLVYLSDECH-NLLAIKFWTGLNQYGYEDI--LKPGSLIAASNLQWRPESTSGIPTLFA 93 (143)
T ss_dssp CCCEEEEEEEEEEEE--TTS--EEEEE-TTS--EEEEEESS-------SS-----TT-EEEEEEEEE-S-TTSSS-EEEE
T ss_pred CccccceEEEEEEEEecCCCceeEEeecCCc-cEEEEEeccCccccchhhh--cCcceEEEEeeeEeecccccCCCeeEe
Confidence 44578899999999664333 3367899875 4578888776543322223 899999999986666554433457889
Q ss_pred eeEEEEccCC
Q 011197 107 NKIVLVGKSD 116 (491)
Q Consensus 107 ~~i~ils~~~ 116 (491)
.++++.+..+
T Consensus 94 ~d~S~FS~nP 103 (143)
T PF09104_consen 94 TDLSVFSANP 103 (143)
T ss_dssp ECCEEEESS-
T ss_pred ccceeeecCc
Confidence 9999999875
No 235
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=41.21 E-value=53 Score=30.14 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=35.9
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
+.|++-.+.... ..+. |+.|+-|.|+|.+..+. .+ ....||.|+++++|.+.
T Consensus 49 i~vv~wgk~Ae~-~~~~--l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAEN-LANW--AKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHHH-HHHH--cCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 667666543111 1345 99999999999998642 22 23589999999998754
No 236
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=40.92 E-value=1.8e+02 Score=36.14 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=52.3
Q ss_pred CCcEEEEEEEEeee--ec--CCC-eEEEEEEcCCCccceEEEEeC-CccchhhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 28 VGLMIVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 28 ~~~~V~v~G~V~~~--R~--~gk-l~Fi~LrD~~g~~~iQvv~~~-~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
.+..|+|.|.|-.+ |. .|+ +.=+.|.|.++. |-|..-. +...-+.... |+.|+.|.|+|.+....-. ++
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s--~~~k~f~~~~~~~~~~~~--~~~g~~v~~~g~~~~d~~~-~~ 309 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSS--IIVKKFSRDKEDLKKFDE--IKKGDWVKVRGSVQNDTFT-RD 309 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCC--EEEEEEecCcchhHHHhc--CCCCCEEEEEEEEeccCCC-Cc
Confidence 44679999999886 33 243 434678998854 5543322 2222233455 9999999999999875432 36
Q ss_pred EEEEEeeEEEEc
Q 011197 102 VELKVNKIVLVG 113 (491)
Q Consensus 102 ~el~~~~i~ils 113 (491)
+.+.+..+..+.
T Consensus 310 ~~~~~~~~~~~~ 321 (1437)
T PRK00448 310 LVMNAQDINEIK 321 (1437)
T ss_pred eEEEeeeeeecC
Confidence 777777776543
No 237
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=40.87 E-value=56 Score=30.65 Aligned_cols=52 Identities=12% Similarity=0.288 Sum_probs=35.1
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
+.|++-..... ...+. |+.||.|.|+|.+.... .+ ...+||.|++|++|+..
T Consensus 54 ~~V~~fGk~AE-~v~~~--LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 54 HRVAFFGRLAE-IVGEY--LKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEehHHHH-HHHHH--hCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 55555443211 11345 99999999999998652 12 23689999999999754
No 238
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=40.82 E-value=94 Score=28.43 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=42.4
Q ss_pred CCCCCCcEEEEEEEEeeeecCCCeEEEEEE----cCCCc--------cceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVN----DGSCL--------SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 24 ~~~~~~~~V~v~G~V~~~R~~gkl~Fi~Lr----D~~g~--------~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
.....|+.|+..|.|.++++..+-+.|.|. |.++. +++=+.++ +|-.-.. ...|-.|.|.|+
T Consensus 29 p~~~~G~~VrwGG~I~~v~n~~~~T~leV~~~PLd~~grP~~~~~s~GRFla~~~----gFLDP~~--y~~Gr~vTV~G~ 102 (160)
T PF03843_consen 29 PDAYQGQQVRWGGVIVNVRNLPDQTELEVVQYPLDSSGRPQTDDPSQGRFLARVP----GFLDPAI--YAPGRLVTVVGT 102 (160)
T ss_pred hhhcCCCEEEECCEEEEEEECCCceEEEEEEccCCCCCCcCCCCCCCCEEEEEeC----CCcCHHH--cCCCCEEEEEEE
Confidence 446789999999999999987666666653 22211 01111111 1211123 668999999999
Q ss_pred EEecCC
Q 011197 92 VVPSQG 97 (491)
Q Consensus 92 v~~~~~ 97 (491)
+.....
T Consensus 103 v~g~~~ 108 (160)
T PF03843_consen 103 VTGMET 108 (160)
T ss_pred ecceEE
Confidence 987654
No 239
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.58 E-value=69 Score=25.00 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc------hhhh-hhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG------YDQV-KSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~------~~~~-~~~~L~~gd~V~V~ 89 (491)
.|.|.|.++.+.| +|++|..+ +...+...... ...+ +. ++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G--~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~--~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG--VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKY--LPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc--EEEEeCCC-----CEEEEEHHHccCccccChhhHhcc--cCCCCEEEEE
Confidence 6789999998777 89999643 56666532211 1111 34 8899988865
No 240
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=40.44 E-value=18 Score=35.65 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=41.5
Q ss_pred ceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011197 401 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 401 ~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdv 479 (491)
..-.+|+.++|| ||.- +. -|.. .|++ --|..+=+.-|+|||.|.|-|.+||-|+
T Consensus 123 wGlGWEVWldGM-EITQ-------FT----YFQQvGGi~-------------~~pv~~EITYGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 123 WGLGWEVWLDGM-EVTQ-------FT----YFQQVGGLE-------------CKPVSVEITYGLERLAMYIQGVENVYDL 177 (293)
T ss_pred cccccEEEECCe-eeee-------ee----eeeeeCCee-------------ccccceeeehhHHHHHHHHhCCCeeeee
Confidence 456899999999 9862 11 1111 2333 1356677889999999999999999998
Q ss_pred cccC
Q 011197 480 IPFP 483 (491)
Q Consensus 480 i~FP 483 (491)
..=.
T Consensus 178 ~w~~ 181 (293)
T TIGR00388 178 EWSD 181 (293)
T ss_pred eecC
Confidence 7754
No 241
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=40.26 E-value=56 Score=30.33 Aligned_cols=52 Identities=10% Similarity=0.228 Sum_probs=35.1
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
+-|++-..... ...+. |+.||-|.|+|.+..+. .+ ...+||.|+.|++|.+.
T Consensus 49 i~~v~wgk~Ae-~~~~~--l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 49 INCVIWRKQAE-NVANY--LKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEeCcHHH-HHHHH--cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 55666554211 11345 99999999999998753 12 12589999999988753
No 242
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=40.14 E-value=1.4e+02 Score=22.04 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=38.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcC-CCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDG-SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~-~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|..++..|-...++|... ++ ..|.+-++.+. .. .. +..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G~~vRlEl~~~~~~-~~iEvel~~~~---~~-l~--l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGPEVRLELKRLDDG-EPIEVELPRER---RQ-LG--LQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCCeEEEEEEECCCC-CEEEEEeCHhH---Hh-cC--CCCCCEEEEE
Confidence 57899999999999999999655 44 57888888653 11 13 7779999875
No 243
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=40.13 E-value=1.2e+02 Score=35.22 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeecc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
...+.+.+|++|...||.||-|-.+++.
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~ 516 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSP 516 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCH
Confidence 3445677899999999999999999875
No 244
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.56 E-value=97 Score=28.34 Aligned_cols=36 Identities=14% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
|..|+.|.|+|.+.... .+ ...++|.|++|..|...
T Consensus 69 l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 69 LKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred CCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 99999999999998652 22 23689999999887654
No 245
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=38.61 E-value=1.3e+02 Score=34.33 Aligned_cols=28 Identities=4% Similarity=0.023 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeecc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
...+.+.+|+.|...||.||-|-.+++.
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~ 427 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQ 427 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccCh
Confidence 4556777899999999999999999876
No 246
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=38.52 E-value=3.2e+02 Score=30.84 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=51.7
Q ss_pred CCCcEEEEEEEEeee--e-cC-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 27 RVGLMIVVAGWVRTL--R-AQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~--R-~~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
..|..|++.|.|.+. + .. +++.=+.+.|+++ .|-+++-.... | ..+. ++.|..|.|+|++..... ..
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~--~l~l~fFn~~~-~-l~~~--~~~G~~v~v~Gk~~~~~~---~~ 128 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTG--VLTLVFFNFPA-Y-LKKK--LKVGERVIVYGKVKRFKG---GL 128 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcE--EEEEEEECccH-H-HHhh--CCCCCEEEEEEEEeeccC---ce
Confidence 468899999999775 3 22 2334456888775 47776654321 1 1234 999999999999998543 35
Q ss_pred EEEEeeEEEEc
Q 011197 103 ELKVNKIVLVG 113 (491)
Q Consensus 103 el~~~~i~ils 113 (491)
++.--++.+.+
T Consensus 129 ~~~hpe~~~~~ 139 (677)
T COG1200 129 QITHPEYIVND 139 (677)
T ss_pred EEEcceEEecC
Confidence 66655565544
No 247
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=38.18 E-value=92 Score=23.39 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=32.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--ch-hh-hhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQ-VKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~-~~-~~~~~L~~gd~V~V~ 89 (491)
.+.|+|.++...| +|+.|-++ +...+..+.. .+ .. ... ++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~--~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG--VFVTLGRG-----VDARVRVSELSDSYLKDWKKR--FKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc--EEEEeCCC-----CEEEEEHHHCCchhhcCHhhc--cCCCCEEEEE
Confidence 4789999999877 89999754 4566654321 11 11 223 8899998886
No 248
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=37.29 E-value=18 Score=37.52 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=39.4
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccCC--HHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~lm~~~e~li~~ 292 (491)
|.|.|-+|||.|.--+..||--+++--+-....+ .++-..++|.|+++
T Consensus 209 klFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~q 258 (536)
T COG2024 209 KLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQ 258 (536)
T ss_pred eeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHH
Confidence 6899999999998777889977777777666553 67888899999887
No 249
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.27 E-value=63 Score=38.50 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCcEEEEEEEEeeeecC---C---CeEEEEEEcCCCccceEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQ---S---SVTFIEVNDGSCLSNMQCVM 65 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~---g---kl~Fi~LrD~~g~~~iQvv~ 65 (491)
.+..|++.|.|.++|.. + .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCc--EEEEe
Confidence 46689999999877642 2 4999999999974 88876
No 250
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=36.18 E-value=32 Score=36.17 Aligned_cols=60 Identities=23% Similarity=0.485 Sum_probs=37.4
Q ss_pred EEEEEEeCCee---EeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCC-Cccc
Q 011197 403 AAMDMLVPRIG---ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE-NIRD 478 (491)
Q Consensus 403 ~~fdl~~~G~g---Ei~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~-~Ird 478 (491)
--|+.+.++.| -|++|+ ||+.+.+++. + ...|..||++|+|||+.++.... +=.+
T Consensus 262 ~vFe~~~~~~g~~~~i~~GG----RYD~L~~~f~--~---------------~~~pavGfs~~le~l~~~l~~~~~~~~~ 320 (412)
T PRK00037 262 TVFEFVTDDLGAQGTVCGGG----RYDGLVEQFG--G---------------PPTPAVGFAIGVERLLLLLEELGEEPVD 320 (412)
T ss_pred eEEEEEECCCCccceeeecc----chhHHHHHhC--C---------------CCCceEEEEEcHHHHHHHHHhcCCCCCC
Confidence 34899987543 677776 4445544441 0 13477899999999998886543 1124
Q ss_pred ccccC
Q 011197 479 AIPFP 483 (491)
Q Consensus 479 vi~FP 483 (491)
|..+|
T Consensus 321 vlI~~ 325 (412)
T PRK00037 321 VYVVP 325 (412)
T ss_pred EEEEE
Confidence 44444
No 251
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=35.41 E-value=78 Score=29.15 Aligned_cols=36 Identities=14% Similarity=0.424 Sum_probs=28.9
Q ss_pred CCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
|+.|+.|.|+|.+.... .+ ...+||.|+.|.+|...
T Consensus 70 L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 70 LRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred cCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 99999999999997652 22 23689999999998764
No 252
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=35.07 E-value=2e+02 Score=21.77 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=31.6
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--ch--hhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY--DQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~--~~~~~~~L~~gd~V~V~ 89 (491)
.+.|+|.++...| +|++|.+.. +..++..+.. .+ +.-.. ++.||.|.|.
T Consensus 5 ~v~g~V~~i~~~g--~~v~l~~~~----~~g~i~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG--VFIDIDGTN----VSGLCHKSEISDNRVADASKL--FRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce--EEEEECCCC----eEEEEEHHHCCCCccCCHhHe--ecCCCEEEEE
Confidence 4799999998776 889987521 4555553321 11 11123 7999999886
No 253
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=34.87 E-value=81 Score=28.96 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=34.6
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
+.|++-.+... ...+. |+.||-|.|+|.+.... .+ ...++|.|++|.+|+-.
T Consensus 45 i~v~awg~~Ae-~v~~y--L~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 45 CRCNIWGNRYD-KMLPY--LKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEhHHHH-HHHHh--CCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 55655543211 11345 99999999999998652 12 23689999999998554
No 254
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=34.51 E-value=3.1e+02 Score=33.46 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCcEEEEEEEEeee--ec--CCC-eEEEEEEcCCCccceEEEEeC-CccchhhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 28 VGLMIVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 28 ~~~~V~v~G~V~~~--R~--~gk-l~Fi~LrD~~g~~~iQvv~~~-~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
....|+|.|.|-.+ |. .|+ +.-+.|.|.++ +|.|..-. +....+.+.. |+.|+.|.|+|.+....-. ++
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~--s~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~ 80 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTD--SLILKKFLKSEEDPEKFDG--IKIGKWVRARGKIELDNFS-RD 80 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCC--CEEEEEecccccchHHHhh--cCCCcEEEEEEEEeccCCC-Cc
Confidence 45679999999876 32 344 44478999885 46664432 2222233456 9999999999999765432 36
Q ss_pred EEEEEeeEEEEc
Q 011197 102 VELKVNKIVLVG 113 (491)
Q Consensus 102 ~el~~~~i~ils 113 (491)
+.+.+..+..+.
T Consensus 81 ~~~~~~~~~~~~ 92 (1213)
T TIGR01405 81 LQMIIKDIEEIP 92 (1213)
T ss_pred eEEEeeeeeecC
Confidence 777777776543
No 255
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=33.79 E-value=1.9e+02 Score=21.26 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=35.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|..+...|...++.+.-+.+ ..|-+.+..+. +..+ . |..||-|.+.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~-~~l~a~it~~~--~~~L-~--L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGG-ETLTARITPES--AEEL-G--LKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTS-EEEEEEEEHHH--HHHC-T---STT-EEEEE
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEEcHHH--HHHc-C--CCCCCEEEEE
Confidence 6899999999999999999987764 24777776532 1111 3 8899988765
No 256
>PRK06386 replication factor A; Reviewed
Probab=33.36 E-value=3e+02 Score=28.68 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee-----c-CC--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----A-QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-----~-~g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
.+|+||.. .++.|.|.|+|..+- . .| .+.=..|-|.|| +|...+... ... |..|
T Consensus 3 ~kI~DI~~--------~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG--~I~fT~W~~------~~~--l~~G 64 (358)
T PRK06386 3 SKISDINA--------ARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETG--TVPFTAWEF------PDA--VKSG 64 (358)
T ss_pred cchhhcCC--------CCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcc--eEEEEecCC------ccc--CCCC
Confidence 35667753 456688999988652 1 11 233345678875 477777642 224 8999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
|+|.+.+...+.-.+ ..+|.+.+.
T Consensus 65 d~v~i~na~v~~~~G--~~~Lnv~~~ 88 (358)
T PRK06386 65 DVIEIKYCYSKEYNG--KIRIYFDSR 88 (358)
T ss_pred CEEEEEeEEEeeECC--EEEEEEcCc
Confidence 999999988776544 678888644
No 257
>PRK07252 hypothetical protein; Provisional
Probab=32.59 E-value=3.3e+02 Score=23.53 Aligned_cols=48 Identities=13% Similarity=0.339 Sum_probs=32.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhh-hhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~-~~~~L~~gd~V~V~ 89 (491)
.+.|.|..+...| +|++|..+ +...+..+.. .+... .. ++.||.|.|.
T Consensus 6 iv~G~V~~V~~~G--~fVei~~~-----~~GllhiseLs~~~~~~~~~~--~~vGD~V~Vk 57 (120)
T PRK07252 6 KLKGTITGIKPYG--AFVALENG-----TTGLIHISEIKTGFIDNIHQL--LKVGEEVLVQ 57 (120)
T ss_pred EEEEEEEEEeCcE--EEEEECCC-----CEEEEEHHHcCCccccChhhc--cCCCCEEEEE
Confidence 4799999999877 88888532 4555554321 11112 23 8999999987
No 258
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=31.94 E-value=1.5e+02 Score=34.30 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=20.9
Q ss_pred HHHHHHHhhCCcEEeecceeecc
Q 011197 156 YATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 156 ~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
+.+|++|...||.||-|-.+++.
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~ 520 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSS 520 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCH
Confidence 57899999999999999999875
No 259
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=31.92 E-value=1.3e+02 Score=29.05 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCcEEEEEEEEee---eecC--C-CeEEEEEE-cC----CCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC
Q 011197 28 VGLMIVVAGWVRT---LRAQ--S-SVTFIEVN-DG----SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 28 ~~~~V~v~G~V~~---~R~~--g-kl~Fi~Lr-D~----~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~ 96 (491)
.-..|.+.|++-+ .|.. | .++-+.|- +. +. -+.|++-.... +.+.. |..||-|.|+|.+....
T Consensus 108 ~~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td--~i~~v~wg~~A--e~~~~--l~KG~~V~V~GrL~sr~ 181 (219)
T PRK05813 108 NPNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSD--YIPCIAWGRNA--RFCKT--LEVGDNIRVWGRVQSRE 181 (219)
T ss_pred CccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCce--EEEEEEEhHHh--HHHhh--CCCCCEEEEEEEEEecc
Confidence 3556889999876 3542 3 23333332 21 22 37777765432 22445 99999999999998652
Q ss_pred ----CC------ceeEEEEEeeEEEEccCC
Q 011197 97 ----GS------KQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 97 ----~~------~~~~el~~~~i~ils~~~ 116 (491)
.+ ....||.|++++.|++..
T Consensus 182 y~~k~g~~~g~kr~~~eV~v~~i~~l~~~~ 211 (219)
T PRK05813 182 YQKKLSEGEVVTKVAYEVSISKMEKVEKEE 211 (219)
T ss_pred eEcCCCCccceEEEEEEEEEEEEEEcCChh
Confidence 11 125899999999987753
No 260
>PRK08059 general stress protein 13; Validated
Probab=31.79 E-value=2e+02 Score=24.78 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=39.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--ch--hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~--~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
.+.|.|..+...| +|++|.++ ++.++..+.. .+ +.-.. ++.||.|.|. +.......+.+.+.+..
T Consensus 10 iv~G~V~~i~~~G--~fV~i~~~-----~~Gli~~sel~~~~~~~~~~~--~~vGD~I~vk--I~~id~~~~~i~lslk~ 78 (123)
T PRK08059 10 VVTGKVTGIQPYG--AFVALDEE-----TQGLVHISEITHGFVKDIHDF--LSVGDEVKVK--VLSVDEEKGKISLSIRA 78 (123)
T ss_pred EEEEEEEEEecce--EEEEECCC-----CEEEEEHHHCCcccccCHHHc--CCCCCEEEEE--EEEEECCCCeEEEEEEE
Confidence 6789999999877 88988654 4555553321 11 11123 7999999987 43332222345555443
Q ss_pred E
Q 011197 109 I 109 (491)
Q Consensus 109 i 109 (491)
+
T Consensus 79 ~ 79 (123)
T PRK08059 79 T 79 (123)
T ss_pred c
Confidence 3
No 261
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=31.70 E-value=37 Score=33.14 Aligned_cols=60 Identities=17% Similarity=0.084 Sum_probs=41.6
Q ss_pred ceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011197 401 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480 (491)
Q Consensus 401 ~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi 480 (491)
..-.+|+.++|| ||.- -.|-++. -|++ --|-++-+--|+|||.|.+-|.+||-|+.
T Consensus 127 wGlGWEVWldGM-EvTQ-----FTYFQQv-----GGie-------------c~pV~~EITYGlERlAmYiQ~vdnVydl~ 182 (298)
T COG0752 127 WGLGWEVWLDGM-EVTQ-----FTYFQQV-----GGLE-------------CKPVSGEITYGLERLAMYIQGVDNVYDLE 182 (298)
T ss_pred cccceeEEEcCe-eeee-----eehhhhh-----CCee-------------ccceeeeeehhHHHHHHHHhCccceeEEe
Confidence 456899999999 8852 1111111 2332 12555668889999999999999999997
Q ss_pred ccCC
Q 011197 481 PFPR 484 (491)
Q Consensus 481 ~FPr 484 (491)
+=..
T Consensus 183 W~~~ 186 (298)
T COG0752 183 WNDG 186 (298)
T ss_pred ecCC
Confidence 6544
No 262
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.68 E-value=39 Score=36.10 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccC
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASD 179 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~ 179 (491)
--++.+.++..||.=...+||.||-||.|-.+.
T Consensus 191 G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~ 223 (560)
T KOG1637|consen 191 GTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKK 223 (560)
T ss_pred cchHHHHHHHHHHHHHHhcCCceecCcchhhhh
Confidence 347889999999999999999999999998754
No 263
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.16 E-value=2.7e+02 Score=26.27 Aligned_cols=78 Identities=9% Similarity=0.022 Sum_probs=49.4
Q ss_pred cEEEEEEEEeeeecCC---CeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEEEEEEEecCC--CceeEE
Q 011197 30 LMIVVAGWVRTLRAQS---SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQG--SKQKVE 103 (491)
Q Consensus 30 ~~V~v~G~V~~~R~~g---kl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G~v~~~~~--~~~~~e 103 (491)
+.|.|.|-|...-.-| .+.=+.+.|++|. +=|+...-. +....+.. +.++|.|.|.|++..=.. +.--++
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGs--F~Vyag~yqPEa~a~l~~--ve~~~~VaViGKi~~y~~d~g~~~~s 121 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGS--FYVYAGQYQPEAKAFLED--VEVPDLVAVIGKIRTYRTDEGVVLFS 121 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCce--EEEEcCCCChHHHHHHHh--ccCCceEEEecccceeecCCCceEEE
Confidence 4578889888875433 3556788899874 555443222 23445667 999999999999865322 322355
Q ss_pred EEEeeEEE
Q 011197 104 LKVNKIVL 111 (491)
Q Consensus 104 l~~~~i~i 111 (491)
|.++.+..
T Consensus 122 iRpE~vs~ 129 (196)
T COG3390 122 IRPELVSK 129 (196)
T ss_pred echhhhhh
Confidence 55554443
No 264
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=31.14 E-value=1.1e+02 Score=26.77 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCCCcEEEEEEEEEecCC---Cc--eeEEEEEeeEEEEcc
Q 011197 80 ITTGASIWIQGNVVPSQG---SK--QKVELKVNKIVLVGK 114 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~---~~--~~~el~~~~i~ils~ 114 (491)
|..||-|.|+|.+....= +. ..+||.++++++|..
T Consensus 65 l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 65 ASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred cCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 999999999999986532 21 358999999999864
No 265
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=30.67 E-value=46 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=33.4
Q ss_pred EEEEEeCC--ee-EeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011197 404 AMDMLVPR--IG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 404 ~fdl~~~G--~g-Ei~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g 472 (491)
-|+.|.++ .+ .|++|+ ||+.+.+.+...+ ...|..||++|+|||+..+..
T Consensus 279 vFe~~~~~~~~~~~i~~GG----RYD~L~~~f~~~~---------------~~~pAvGfa~~~~~l~~~l~~ 331 (423)
T PRK12420 279 VYEIFLKDGSITSSIGSGG----RYDNIIGAFRGDD---------------MNYPTVGISFGLDVIYTALSQ 331 (423)
T ss_pred EEEEEecCCCccccccCCc----cHHHHHHHhCCCC---------------CCCCceeEEEcHHHHHHHHHh
Confidence 58999875 22 588887 4555555442110 024789999999999988864
No 266
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=30.49 E-value=41 Score=36.54 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=24.0
Q ss_pred eEEEccccccCCCCCCc----ccccccceeeEeccCC
Q 011197 246 VYTFGPTFRAENSNTSR----HLAEFWMIEPELAFAD 278 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~ 278 (491)
|-|||++||||= |+| -+-||||.|+|. |.+
T Consensus 190 iaQIGKsfRNEI--SPr~gl~R~REF~QaEiE~-Fv~ 223 (558)
T COG0423 190 IAQIGKSFRNEI--SPRNGLFRTREFEQAEIEF-FVD 223 (558)
T ss_pred EEeechhhcccc--Ccccceeehhhhhhhheee-EEC
Confidence 899999999993 444 457999999987 443
No 267
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=29.97 E-value=3.7e+02 Score=23.32 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=55.1
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
.-+.+.|+.. +....|+.|++.|++++.-....++=+.=.-.++ .-|+.++-+.. +-+ . .+.|+.+.|-
T Consensus 6 ~~~~l~Evs~----~~~~~g~svR~~GrL~~yD~~~~~a~l~~~~~~~--~~~l~V~t~~l--~~~-~--~~~gslyq~i 74 (118)
T PF15490_consen 6 VYVFLWEVSS----GFVPEGKSVRTFGRLQSYDVATSRATLTAQHESD--QHSLKVDTKLL--EPF-Q--ARVGSLYQFI 74 (118)
T ss_pred EEEehHHhcC----ccccCCCeEEEEEEEEEEeccCCEEEEEeeccCC--CcEEEEEeeEc--ccc-c--cCCCCEEEEE
Confidence 3456667632 3357899999999999987665554332122221 25666664431 111 3 6799999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEE
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~il 112 (491)
|.+...+.. ++..|+|-=++.+
T Consensus 75 GEl~~~~~~-~~~~L~ARV~r~V 96 (118)
T PF15490_consen 75 GELEHQPQD-GGIVLKARVLRCV 96 (118)
T ss_pred EEEEEEcCC-CcEEEEEEEEEec
Confidence 999887322 2466665544443
No 268
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=29.58 E-value=3.4e+02 Score=23.82 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=56.5
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeec----CCC--eEEEEEEcCCCc--cceEEEEeCCccchhhhhhcCCCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----QSS--VTFIEVNDGSCL--SNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~----~gk--l~Fi~LrD~~g~--~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
+.|+++.. ..++.|.|.|=|..... .|+ .+-+.|.|.++. ..|.|.+-.... +.+.. +..|
T Consensus 4 ~~i~~~~~-------~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~--~~LP~--v~~G 72 (138)
T cd04497 4 TPLSSALK-------ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE--ESLPI--VKVG 72 (138)
T ss_pred EeHHHHHh-------ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh--hhCCC--CCCC
Confidence 45666653 36788999999988643 232 445678898762 467776654431 22445 7899
Q ss_pred cEEEEEEEEEecCCCc-eeEEEE-EeeEEEEccCC
Q 011197 84 ASIWIQGNVVPSQGSK-QKVELK-VNKIVLVGKSD 116 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~-~~~el~-~~~i~ils~~~ 116 (491)
|+|.+.+.-...-.+. ..+.-. ..++-|.....
T Consensus 73 DVIll~~~kv~~~~g~~~~~~~~~~ss~avf~~~~ 107 (138)
T cd04497 73 DIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDD 107 (138)
T ss_pred CEEEEEEEEEEEECCceEEEECCCceeEEEEcCCC
Confidence 9999999665543331 111111 34466666654
No 269
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=28.69 E-value=1.2e+02 Score=27.30 Aligned_cols=52 Identities=4% Similarity=0.146 Sum_probs=34.7
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
+.|++-..... ...+. |..||-|.|+|.+.... .+ ...++|.+++|.++...
T Consensus 56 ~~V~~wg~~Ae-~v~~~--l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 56 APVELWHRDAE-HWARL--YQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred EEEEEEhHHHH-HHHHh--cCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 56666543211 11345 99999999999998652 12 13689999999987653
No 270
>PRK05807 hypothetical protein; Provisional
Probab=28.42 E-value=3.9e+02 Score=23.60 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=39.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--chh-hhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYD-QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~~-~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
.+.|.|..+...| +|++| ++ .+.++..+.. .|- .+. ..++.||.|.|. +..... .+.++|....+
T Consensus 8 vv~G~Vt~i~~~G--afV~L-~~-----~~Glvhiseis~~~v~~~~-~~~kvGd~V~Vk--V~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 8 ILEGTVVNITNFG--AFVEV-EG-----KTGLVHISEVADTYVKDIR-EHLKEQDKVKVK--VISIDD-NGKISLSIKQA 75 (136)
T ss_pred EEEEEEEEEECCe--EEEEE-CC-----EEEEEEhhhcccccccCcc-ccCCCCCEEEEE--EEEECC-CCcEEEEEEec
Confidence 6789999998877 89999 43 3566654431 121 111 138999999876 443332 24576665543
No 271
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=28.36 E-value=2.4e+02 Score=20.54 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=30.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--ch--hhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY--DQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~--~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|..+...| +|++|-++ .+..+..+.. .+ ..-.. ++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g--~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG--AFVELGGG-----ISGLVHISQIAHKRVKDVKDV--LKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee--EEEEECCC-----CEEEEEhHHcCCcccCCHHHc--cCCCCEEEEE
Confidence 4688999998776 78888543 4566654321 11 11133 8999999876
No 272
>PLN02530 histidine-tRNA ligase
Probab=28.31 E-value=50 Score=35.81 Aligned_cols=47 Identities=21% Similarity=0.404 Sum_probs=30.1
Q ss_pred EEEEEeC-C-eeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011197 404 AMDMLVP-R-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 404 ~fdl~~~-G-~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~ 471 (491)
-|+.+.+ | .+-|++|+ ||+.+.+.+ |- --.|..|||+|++||+.++.
T Consensus 342 vFe~~~~~~~~~~I~gGG----RYD~Li~~f---gg--------------~~~pAvGFa~g~~~l~~~l~ 390 (487)
T PLN02530 342 VFEGFDRAGKLRAICGGG----RYDRLLSTF---GG--------------EDTPACGFGFGDAVIVELLK 390 (487)
T ss_pred EEEEEecCCCcceeeecc----cHHHHHHHh---CC--------------CCCCeeEEEEhHHHHHHHHH
Confidence 4777763 3 24678876 455554443 10 12488999999999887764
No 273
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=28.15 E-value=1.3e+02 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=29.2
Q ss_pred CCCCcEEEEEEEEEecC---CC--ceeEEEEEe---eEEEEccCCC
Q 011197 80 ITTGASIWIQGNVVPSQ---GS--KQKVELKVN---KIVLVGKSDP 117 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~---~~--~~~~el~~~---~i~ils~~~~ 117 (491)
|..||.|.|+|.+..+. .+ ...+||.|+ ++++|++...
T Consensus 72 L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~~ 117 (175)
T PRK13732 72 LRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQ 117 (175)
T ss_pred cCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCCC
Confidence 99999999999987542 12 135889998 8999987654
No 274
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=27.52 E-value=30 Score=38.16 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.8
Q ss_pred ccceeccHHHHHHHHcC
Q 011197 456 HAGFGLGFERLVQFATG 472 (491)
Q Consensus 456 ~~G~glGidRL~m~l~g 472 (491)
|.||++|+|||++.|..
T Consensus 442 ~~Gfa~gieRli~~l~e 458 (563)
T TIGR00418 442 HRAILGSIERFIAILLE 458 (563)
T ss_pred EeeccCcHHHHHHHHHH
Confidence 46999999999998854
No 275
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=27.45 E-value=2.7e+02 Score=20.97 Aligned_cols=50 Identities=6% Similarity=0.118 Sum_probs=31.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--chhhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|..+...| +|+.|-.+ ++.++..+.. .+..-....++.||.|.+.
T Consensus 6 iv~g~V~~v~~~g--i~v~l~~~-----~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY--VLVQLGNK-----VTGPSFITDALDDYSEALPYKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe--EEEEeCCC-----cEEEEEhhhccCccccccccccCCCCEEEEE
Confidence 5689999997766 88888543 6777765431 2211011238889988875
No 276
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=26.97 E-value=1.3e+02 Score=28.52 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=38.5
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~ 96 (491)
..++.|||.-+-. +.++|...... .++|+.++.. .+ ++.||.|.|+|.+.+.-
T Consensus 39 ~~tiEGrVvEV~~--~~i~iesk~yn--~~v~i~~d~~-------~n--vKVGD~VKaTG~m~rnf 91 (213)
T PRK06763 39 FSTIEGRVVEVDN--GVIVIKSKQYE--EPVSVYIDSL-------SN--VKVGDEVKATGSMMRNF 91 (213)
T ss_pred cceeeeEEEEEeC--CEEEEEeccCC--CceEEEecCC-------CC--cccCcEEEEchHHHHhh
Confidence 3589999998863 34555554444 5799988754 25 89999999999876653
No 277
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.56 E-value=3.1e+02 Score=21.40 Aligned_cols=48 Identities=23% Similarity=0.363 Sum_probs=32.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc---h-hhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---Y-DQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~---~-~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|.++...| +|++|-++ ++..++.+... + +.-.. ++.||.|.|.
T Consensus 17 i~~g~V~~v~~~G--~fv~l~~~-----~~g~v~~~el~~~~~~~~~~~--~~~Gd~v~vk 68 (83)
T cd04461 17 VVHGYVRNITPYG--VFVEFLGG-----LTGLAPKSYISDEFVTDPSFG--FKKGQSVTAK 68 (83)
T ss_pred EEEEEEEEEeece--EEEEcCCC-----CEEEEEHHHCCcccccCHHHh--cCCCCEEEEE
Confidence 5579999999877 89998543 57777654311 1 11234 8899999887
No 278
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=26.38 E-value=64 Score=35.61 Aligned_cols=30 Identities=37% Similarity=0.555 Sum_probs=23.8
Q ss_pred eEEEccccccCCCCCCc----ccccccceeeEeccCC
Q 011197 246 VYTFGPTFRAENSNTSR----HLAEFWMIEPELAFAD 278 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~ 278 (491)
+-|||++|||| + |+| -+-||+|.|+|. |.+
T Consensus 186 iaQiGk~fRNE-I-sPr~~l~R~REF~q~EiE~-F~~ 219 (551)
T TIGR00389 186 VAQIGKSFRNE-I-SPRNGLFRVREFEQAEIEF-FVH 219 (551)
T ss_pred ehhhhHhhhcc-c-CcccceEEeehhhhchhhe-ecC
Confidence 78999999999 3 444 357999999987 544
No 279
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=25.64 E-value=1.7e+02 Score=24.62 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCCcEEEEEEEEEecCC--CceeEEEEEeeEEEE
Q 011197 80 ITTGASIWIQGNVVPSQG--SKQKVELKVNKIVLV 112 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~--~~~~~el~~~~i~il 112 (491)
|+.|+.|.|.|.+....+ +...+-|++..+..+
T Consensus 68 i~~Gs~i~v~GFla~~~~~sg~~~lvlha~qi~~i 102 (103)
T COG2965 68 ITVGSYILVVGFLACHKRRSGLSKLVLHAEQIEFI 102 (103)
T ss_pred cccccEEEEEEEEEeecccCCccEEEEEeeEEEec
Confidence 999999999999976544 334677777766543
No 280
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=24.90 E-value=92 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=17.8
Q ss_pred HcCCCcccH-HHHHHHHhcCCCCc
Q 011197 434 ELKLNRDSY-WWYLDLRHYGSVPH 456 (491)
Q Consensus 434 ~~g~~~~~~-~~yl~~~~~G~pp~ 456 (491)
..|+.+.+. -|...+.++|.||.
T Consensus 12 ALg~~~~~~PPwl~~M~~~G~PP~ 35 (48)
T PF04046_consen 12 ALGMQENDPPPWLYRMRRLGYPPG 35 (48)
T ss_pred HcCCCCCCCChHHHHHHhcCCCCC
Confidence 457765543 79999999999985
No 281
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=24.75 E-value=2.1e+02 Score=20.99 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=30.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc---hhh-hhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ-VKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~---~~~-~~~~~L~~gd~V~V~ 89 (491)
.+.|.|..+...| +|++|-++ +...+..+... +.. -.. ++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG--AFVEILPG-----KDGLVHISELSDERVEKVEDV--LKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE--EEEEeCCC-----CEEEEEhHHcCCccccCHHHc--cCCCCEEEEE
Confidence 4689999998876 78888654 34555543211 111 123 7899999887
No 282
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=24.65 E-value=60 Score=33.95 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=31.4
Q ss_pred EEEEEEeCCe--eEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHH
Q 011197 403 AAMDMLVPRI--GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 469 (491)
Q Consensus 403 ~~fdl~~~G~--gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~ 469 (491)
--|+++.+|. +.|++|+ ||+.+.+.+-. | .-.|..||++|+|||+.+
T Consensus 322 iVFe~~~~~~~~~~I~~GG----RYD~Li~~fg~-~---------------~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 322 FVFEIRAAGNGDPPLAGGG----RYDGLLTRLGA-G---------------EPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred eEEEEEECCCCCCcccCCc----CHHHHHHHhCC-C---------------CCCCeeEEEEcHHHHHhh
Confidence 4588888764 3688887 56666555420 0 124788999999998653
No 283
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=23.86 E-value=3.1e+02 Score=20.35 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|.++...|..+-+.++-+.+ ..+.+.++.+. +....|..|+-|.+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~-~~l~a~i~~~~-----~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG-TKLTAVITLES-----VAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEecHHH-----HhhCCCCCCCEEEEE
Confidence 6899999998877766666664332 24676666432 222228899988765
No 284
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=23.77 E-value=1.7e+02 Score=32.98 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeecc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
.-..+...+.+|++|...||.||-|-.|++.
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~ 380 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSP 380 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCH
Confidence 3355667888999999999999999999884
No 285
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=23.76 E-value=2.1e+02 Score=21.64 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch----hhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY----DQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~----~~~~~~~L~~gd~V~V~ 89 (491)
.+.|+|.++...| +|++|-++ +...+..+.... ..... +..|+.|.|.
T Consensus 7 iv~g~V~~v~~~g--~~V~l~~~-----~~g~ip~~~l~~~~~~~~~~~--~~~G~~v~v~ 58 (74)
T PF00575_consen 7 IVEGKVTSVEDFG--VFVDLGNG-----IEGFIPISELSDDRIDDPSEV--YKIGQTVRVK 58 (74)
T ss_dssp EEEEEEEEEETTE--EEEEESTS-----SEEEEEGGGSSSSEESSSHGT--CETTCEEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCc-----EEEEEEeehhcCccccccccc--cCCCCEEEEE
Confidence 5689999998855 89998832 677787654221 11234 8889988776
No 286
>PRK08582 hypothetical protein; Provisional
Probab=23.29 E-value=2.3e+02 Score=25.15 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=31.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc--ch-hh-hhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQ-VKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~--~~-~~-~~~~~L~~gd~V~V~ 89 (491)
.+.|.|..+...| +||.|-++ +..++..+.. .+ .. ... ++.||.|.|.
T Consensus 8 iv~G~V~~I~~fG--~fV~L~~~-----~~GlVhiSels~~~v~~~~~~--l~vGD~Vkvk 59 (139)
T PRK08582 8 KLQGKVTGITNFG--AFVELPEG-----KTGLVHISEVADNYVKDINDH--LKVGDEVEVK 59 (139)
T ss_pred EEEEEEEEEECCe--EEEEECCC-----CEEEEEeeccCcccccccccc--cCCCCEEEEE
Confidence 4799999999887 89999654 3444443321 11 11 124 8999999886
No 287
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=22.38 E-value=1.3e+02 Score=28.64 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=33.7
Q ss_pred EEeeeecCCC--------eEEEEEEcCCCc-----cceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEec
Q 011197 37 WVRTLRAQSS--------VTFIEVNDGSCL-----SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (491)
Q Consensus 37 ~V~~~R~~gk--------l~Fi~LrD~~g~-----~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~ 95 (491)
+|+.+|..|+ +-+..+.|++.. .-+.||-+++...|..- +.|..|+||.+...+++.
T Consensus 42 ri~~VR~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRr--niitKGAII~tda~Pfrq 111 (205)
T PTZ00148 42 RVRPVRCRGGNFKFRALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRT--KTLVKNAIVQIDAAPFKQ 111 (205)
T ss_pred EEEEEEccCCceeeEEEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhh--cceeeceEEeeccchHHH
Confidence 6677776642 344555554421 11556666665545333 349999999998776653
No 288
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=22.12 E-value=2.1e+02 Score=21.62 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=29.6
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-----hhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-----DQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-----~~~~~~~L~~gd~V~V~ 89 (491)
.+.|+|..+...| +|+.|-++ +..++..+...+ +.-.. ++.||.|.|.
T Consensus 6 ~~~g~V~~i~~~G--~fv~l~~~-----~~Gl~~~~~l~~~~~~~~~~~~--~~~Gd~v~v~ 58 (72)
T cd05689 6 RLFGKVTNLTDYG--CFVELEEG-----VEGLVHVSEMDWTNKNIHPSKV--VSLGDEVEVM 58 (72)
T ss_pred EEEEEEEEEEeeE--EEEEcCCC-----CEEEEEEEeccCcccccCcccE--eCCCCEEEEE
Confidence 5899999999887 89999653 344444322111 11122 6777777775
No 289
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=21.67 E-value=4.5e+02 Score=24.60 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=47.3
Q ss_pred CCCCCCcEEEEEEEEeeeecCCCeEEEEEEc----CCCc--------cceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVND----GSCL--------SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 24 ~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD----~~g~--------~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
...+.|+.|++-|.|.++++.+.-+-+.|.. .++. +++=+.++ +|-.-.. . .|-.|.|.|+
T Consensus 43 p~~y~G~~Vr~GG~I~~v~N~~~~T~lEVv~~PLd~~grP~~~~~s~GRFla~~~----gFLDP~~--y-~Gr~VTVvG~ 115 (182)
T TIGR00752 43 PLLYVGQTARFGGKVVNVTNLANQTKLEIASLPLDSIAKPFVELQSDGRFIAYFN----GFLDPVN--L-RERYVTVGGQ 115 (182)
T ss_pred hhhcCCCEEEECCEEEEEEECCCceEEEEEEcccCCCCCcCCCCCCCCEEEEEeC----CCcChhh--c-CCCEEEEEEE
Confidence 3457899999999999999876555555431 1110 01111111 1211122 4 5899999999
Q ss_pred EEecCCC-ceeE-----EEEEeeEEEEc
Q 011197 92 VVPSQGS-KQKV-----ELKVNKIVLVG 113 (491)
Q Consensus 92 v~~~~~~-~~~~-----el~~~~i~ils 113 (491)
+...+.+ .++. -|.++.+++=.
T Consensus 116 i~G~e~gkIGe~~Y~yPvv~~~~~~lW~ 143 (182)
T TIGR00752 116 IAGTEKGKIEQAPYTFPVVQADGYRIWH 143 (182)
T ss_pred ecceEEeeeCCCcceeEEEEeeeEEecc
Confidence 9876543 2333 35556555543
No 290
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=21.03 E-value=2.6e+02 Score=24.65 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=41.1
Q ss_pred eeeccccCCcccCCCCCCcE--EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLM--IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~--V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
+.|+||...- +...-+ |...|++.+..+..++.=.-+-|.+|.-++||.- +. - .++.+||+|..+
T Consensus 5 i~ikdi~P~~----kN~~v~fIvl~~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~--e~-----~--~~~~PGDIirLt 71 (134)
T KOG3416|consen 5 IFIKDIKPGL----KNINVTFIVLEYGRATKTKDGHEVRSCKVADETGSINISVWD--EE-----G--CLIQPGDIIRLT 71 (134)
T ss_pred hhHhhcChhh----hcceEEEEEEeeceeeeccCCCEEEEEEEecccceEEEEEec--Cc-----C--cccCCccEEEec
Confidence 4567776542 222222 3456777776665577767788998753444433 21 1 239999999998
Q ss_pred EE
Q 011197 90 GN 91 (491)
Q Consensus 90 G~ 91 (491)
|=
T Consensus 72 ~G 73 (134)
T KOG3416|consen 72 GG 73 (134)
T ss_pred cc
Confidence 63
No 291
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=20.90 E-value=1.8e+02 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.506 Sum_probs=26.8
Q ss_pred CCCCcEEEEEEEEEecC----CCc--eeEEEEEe---eEEEEccC
Q 011197 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVN---KIVLVGKS 115 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~~--~~~el~~~---~i~ils~~ 115 (491)
|+.||-|.|+|.+.... .+. ..+||.+. ++++|++.
T Consensus 72 L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 72 LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred cCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 99999999999998653 121 25788776 78887654
No 292
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=20.85 E-value=1.6e+02 Score=32.53 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=31.0
Q ss_pred cCCceEEEccccccC----CC----CCCcccccccceeeEeccCCH--HHHHHHHHHHHH
Q 011197 242 ALSNVYTFGPTFRAE----NS----NTSRHLAEFWMIEPELAFADL--KDDMACATAYLQ 291 (491)
Q Consensus 242 g~~rvfeI~~~FR~E----~~----~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li~ 291 (491)
...|+=..-||.|.. +. .|.||+.=|.||=- .+|.+| ++.+..+-+|+.
T Consensus 53 ~~~r~~~~Q~CiR~~GkhnDld~VG~t~rH~T~FEMlGn-~sfgdYfK~eai~~awe~lt 111 (552)
T PF01411_consen 53 PANRLVSSQKCIRTGGKHNDLDNVGRTGRHHTFFEMLGN-FSFGDYFKEEAIEYAWEFLT 111 (552)
T ss_dssp SSSCEEEEEEEE-EETTEECGGGTTTSSS--SEEEEEEE-EEECSS-HHHHHHHHHHHHH
T ss_pred CCCcccccceeeccCCCcchhhhcCCCceEeeehhhccc-cccccccHHHHHHHHHHHHH
Confidence 347889999999987 42 47999999999854 567774 444444444433
No 293
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=20.75 E-value=2.7e+02 Score=20.82 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=31.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchh----hhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~----~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|.++...+ +|++|-.+ ...++..+..... .... ++.||.|.+.
T Consensus 3 iv~g~V~~i~~~~--~~v~l~~~-----~~g~l~~~e~~~~~~~~~~~~--~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE--VLVDIGYK-----SEGIIPISEFSDDPIENGEDE--VKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC-----ceEEEEHHHhCccccCCHhHc--CCCCCEEEEE
Confidence 4689999998754 88998422 4667765432111 1123 8899998887
No 294
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=20.75 E-value=1.1e+02 Score=25.38 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=35.7
Q ss_pred EEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEE
Q 011197 50 IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 50 i~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~il 112 (491)
+.|+||. ..+|.++..+... .+.+|.|+.|++|.+.=....+-.+ .--|.+.+++|+
T Consensus 40 i~lSDG~--~~~~amLatqln~--~v~~g~l~~~sIirl~~y~~~~i~~--k~viiIldlevl 96 (97)
T cd04477 40 ILLSDGV--YYVQAMLATQLNP--LVESGQLQRGSIIRLKRFICNVIKG--KRILIILDLEVV 96 (97)
T ss_pred EEEEChh--HHHHHHHhhhhhh--HHhcCCccCCcEEEECeEEEEEecC--cEEEEEEeeEEe
Confidence 6789997 4589988765422 2445669999999996443333222 124555566665
No 295
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=20.47 E-value=3.6e+02 Score=21.75 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=32.6
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch---h----hhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---D----QVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~---~----~~~~~~L~~gd~V~V~ 89 (491)
.+.|+|.++-..-.-+|++|-++ ....+..++..+ . .... ++.||.|.|.
T Consensus 10 iy~g~V~~i~~~~~GaFV~l~~g-----~~Gllh~seis~~~~~~v~~~~~~--~~~Gd~v~Vq 66 (88)
T cd04453 10 IYLGRVKKIVPGLQAAFVDIGLG-----KNGFLHLSDILPAYFKKHKKIAKL--LKEGQEILVQ 66 (88)
T ss_pred EEEEEEEEeccCCcEEEEEeCCC-----CEEEEEhHHcCchhccccCCHHHc--CCCCCEEEEE
Confidence 57899999987523499999764 345565443211 1 1123 8899998887
No 296
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=20.46 E-value=7.3e+02 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCCcEEEEEEEEEecCC---------CceeEEEEEeeEEEEcc
Q 011197 80 ITTGASIWIQGNVVPSQG---------SKQKVELKVNKIVLVGK 114 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~---------~~~~~el~~~~i~ils~ 114 (491)
+.+||.|.|+|++..++. ..-++.+.+..+...++
T Consensus 210 ~~pGdrV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 253 (682)
T COG1241 210 VRPGDRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEKLDK 253 (682)
T ss_pred cCCCCEEEEEEEEecccccccccccCCceEEEEEEEEEEEeccc
Confidence 999999999999886652 11245666666666654
No 297
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=20.35 E-value=60 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhCCcEEeecceee
Q 011197 152 NALAYATHKFFQENGFIWISSPIIT 176 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~ 176 (491)
++|-+..-+||.++|...|.+--|.
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slv 26 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVV 26 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcC
Confidence 3566778889999999988755444
Done!