Query 011197
Match_columns 491
No_of_seqs 213 out of 1361
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 8E-105 3E-109 833.5 40.1 424 9-490 2-437 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 5E-104 2E-108 831.2 36.4 425 10-490 18-455 (456)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 3E-101 9E-106 809.2 39.3 420 13-490 2-434 (435)
4 1wyd_A Hypothetical aspartyl-t 100.0 3E-101 9E-106 806.5 38.2 423 10-491 3-429 (429)
5 3i7f_A Aspartyl-tRNA synthetas 100.0 1E-100 4E-105 814.4 38.7 427 9-490 48-547 (548)
6 1x54_A Asparaginyl-tRNA synthe 100.0 9E-100 3E-104 796.5 37.9 425 10-491 3-434 (434)
7 1n9w_A Aspartyl-tRNA synthetas 100.0 8E-100 3E-104 793.7 35.7 411 11-490 2-421 (422)
8 3bju_A Lysyl-tRNA synthetase; 100.0 4.8E-98 2E-102 797.7 38.9 441 6-488 29-508 (521)
9 1eov_A ASPRS, aspartyl-tRNA sy 100.0 2.3E-97 8E-102 788.1 39.7 432 9-491 21-487 (487)
10 1e1o_A Lysyl-tRNA synthetase, 100.0 5.1E-97 2E-101 786.2 37.8 426 7-488 38-503 (504)
11 4ex5_A Lysine--tRNA ligase; st 100.0 7.1E-97 2E-101 784.7 36.7 427 6-487 59-527 (529)
12 3a74_A Lysyl-tRNA synthetase; 100.0 1.7E-96 6E-101 781.0 37.3 435 7-487 30-492 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 1.4E-94 4.7E-99 779.1 41.2 412 10-490 3-556 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 7.2E-94 2.5E-98 775.8 40.9 434 10-490 2-562 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 1.2E-83 4.2E-88 692.2 36.6 438 1-488 1-571 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 1E-74 3.4E-79 589.4 24.5 303 138-486 27-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 3E-67 1E-71 525.4 25.4 279 133-490 1-292 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 1.8E-24 6E-29 215.9 6.1 170 95-290 20-203 (290)
19 12as_A Asparagine synthetase; 99.9 7E-21 2.4E-25 186.0 20.0 277 147-481 4-315 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 6.9E-18 2.3E-22 167.7 10.0 189 151-485 73-279 (288)
21 1b7y_A Phers, protein (phenyla 99.7 2.3E-16 7.8E-21 160.2 11.0 133 151-292 103-243 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.5 1.3E-14 4.5E-19 144.6 11.0 121 151-292 55-182 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.5 3.4E-14 1.2E-18 142.6 9.4 117 152-292 110-233 (327)
24 3l4g_A Phenylalanyl-tRNA synth 99.4 3.9E-12 1.3E-16 134.0 14.2 136 148-292 224-397 (508)
25 3cmq_A Phenylalanyl-tRNA synth 99.0 3.3E-09 1.1E-13 110.1 12.9 103 152-276 51-164 (415)
26 2du7_A O-phosphoseryl-tRNA syn 98.5 6.2E-07 2.1E-11 95.0 12.1 48 245-292 219-268 (549)
27 2odr_D Phosphoseryl-tRNA synth 98.4 4.4E-07 1.5E-11 97.1 10.0 49 244-292 225-275 (685)
28 2odr_B Phosphoseryl-tRNA synth 98.4 6.3E-07 2.2E-11 95.7 10.9 49 244-292 225-275 (648)
29 2odr_A Phosphoseryl-tRNA synth 98.4 6.8E-07 2.3E-11 95.5 10.9 49 244-292 225-275 (665)
30 2du3_A O-phosphoseryl-tRNA syn 98.4 2.2E-06 7.4E-11 90.9 14.3 48 245-292 207-256 (534)
31 2odr_C Phosphoseryl-tRNA synth 98.4 8.2E-07 2.8E-11 95.2 10.9 49 244-292 225-275 (701)
32 1evl_A Threonyl-tRNA synthetas 98.1 4E-06 1.4E-10 86.7 8.0 116 145-292 27-162 (401)
33 2i4l_A Proline-tRNA ligase; al 98.1 5.9E-06 2E-10 87.0 9.3 115 144-289 63-197 (458)
34 1z7m_A ATP phosphoribosyltrans 98.1 1.7E-05 5.7E-10 80.4 11.7 103 146-278 34-151 (344)
35 1qe0_A Histidyl-tRNA synthetas 98.1 4.1E-06 1.4E-10 87.0 6.9 103 146-278 14-135 (420)
36 2dq3_A Seryl-tRNA synthetase; 98.0 6.8E-06 2.3E-10 85.6 8.2 117 145-292 169-305 (425)
37 1hc7_A Prolyl-tRNA synthetase; 98.0 2.9E-05 1E-09 82.1 12.5 121 145-290 41-179 (477)
38 1nyr_A Threonyl-tRNA synthetas 98.0 1.5E-05 5.1E-10 87.5 9.5 118 144-292 267-405 (645)
39 1wu7_A Histidyl-tRNA synthetas 97.9 3.8E-05 1.3E-09 80.2 11.5 103 146-278 18-133 (434)
40 2j3l_A Prolyl-tRNA synthetase; 97.9 3.5E-05 1.2E-09 83.4 11.1 117 144-291 43-179 (572)
41 3uh0_A Threonyl-tRNA synthetas 97.9 2.5E-05 8.4E-10 82.2 8.9 121 144-292 60-200 (460)
42 3od1_A ATP phosphoribosyltrans 97.8 4.8E-05 1.7E-09 78.6 10.2 101 146-278 22-137 (400)
43 1h4v_B Histidyl-tRNA synthetas 97.8 5.2E-05 1.8E-09 78.7 10.1 103 146-278 15-135 (421)
44 3net_A Histidyl-tRNA synthetas 97.8 4.7E-05 1.6E-09 80.3 9.6 130 146-292 24-174 (465)
45 1htt_A Histidyl-tRNA synthetas 97.8 5.9E-05 2E-09 78.4 10.3 103 146-278 16-135 (423)
46 4e51_A Histidine--tRNA ligase; 97.8 5.3E-05 1.8E-09 79.9 9.7 104 146-278 44-164 (467)
47 3lc0_A Histidyl-tRNA synthetas 97.8 8.1E-05 2.8E-09 78.2 10.9 101 146-278 41-157 (456)
48 1nj8_A Proline-tRNA synthetase 97.8 9.7E-05 3.3E-09 77.7 11.3 123 145-292 35-177 (459)
49 1nj1_A PROR, proline-tRNA synt 97.7 7.5E-05 2.6E-09 79.4 9.8 122 145-292 68-209 (501)
50 3lss_A Seryl-tRNA synthetase; 97.7 5.7E-05 2E-09 79.3 8.1 117 145-292 205-345 (484)
51 3qne_A Seryl-tRNA synthetase, 97.7 5.3E-05 1.8E-09 79.5 7.5 117 145-292 182-322 (485)
52 1qf6_A THRRS, threonyl-tRNA sy 97.7 8.5E-05 2.9E-09 81.3 9.2 118 143-292 266-403 (642)
53 3rac_A Histidine-tRNA ligase; 97.7 0.00011 3.9E-09 75.1 9.2 101 147-278 36-157 (373)
54 1ses_A Seryl-tRNA synthetase; 97.6 0.0001 3.6E-09 76.5 9.0 117 146-292 164-301 (421)
55 2dq0_A Seryl-tRNA synthetase; 97.6 0.00011 3.6E-09 77.2 8.1 120 145-292 190-326 (455)
56 4g84_A Histidine--tRNA ligase, 97.6 0.00032 1.1E-08 73.6 11.6 103 144-277 24-139 (464)
57 1wle_A Seryl-tRNA synthetase; 97.6 0.00043 1.5E-08 73.2 12.1 120 144-292 215-357 (501)
58 3ial_A Prolyl-tRNA synthetase; 97.5 0.00018 6E-09 76.5 9.1 124 144-292 51-193 (518)
59 4hvc_A Bifunctional glutamate/ 97.5 0.00025 8.5E-09 75.5 9.9 123 145-292 58-199 (519)
60 4g85_A Histidine-tRNA ligase, 97.4 0.0005 1.7E-08 73.4 10.8 103 144-277 77-192 (517)
61 3a32_A Probable threonyl-tRNA 97.4 0.00025 8.4E-09 74.9 8.3 115 147-292 48-184 (471)
62 3err_A Fusion protein of micro 97.4 0.0005 1.7E-08 73.4 9.8 116 144-292 271-410 (536)
63 1ati_A Glycyl-tRNA synthetase; 97.3 0.00077 2.6E-08 71.6 11.0 34 146-179 37-72 (505)
64 3vbb_A Seryl-tRNA synthetase, 97.3 0.00049 1.7E-08 72.8 9.3 126 145-292 198-347 (522)
65 2cja_A Seryl-tRNA synthetase; 97.3 0.00033 1.1E-08 74.4 7.7 145 145-292 228-395 (522)
66 1usy_A ATP phosphoribosyltrans 96.6 0.0055 1.9E-07 59.8 8.8 91 154-278 6-101 (275)
67 3kdf_D Replication protein A 3 96.5 0.03 1E-06 48.3 11.7 98 11-114 8-111 (132)
68 3mf2_A BLL0957 protein; aminoa 96.4 0.0024 8.2E-08 63.9 4.9 140 145-292 61-216 (346)
69 4gop_B Putative uncharacterize 96.4 0.034 1.2E-06 48.2 11.6 97 11-114 11-116 (136)
70 3kf6_A Protein STN1; OB fold, 96.4 0.038 1.3E-06 49.3 12.1 80 29-114 47-128 (159)
71 3dm3_A Replication factor A; p 96.3 0.048 1.7E-06 45.1 11.4 88 10-116 4-101 (105)
72 3ikl_A DNA polymerase subunit 96.2 0.0099 3.4E-07 62.0 8.5 108 146-292 102-226 (459)
73 3e0e_A Replication protein A; 96.1 0.087 3E-06 42.8 11.9 84 12-115 3-96 (97)
74 2zt5_A Glycyl-tRNA synthetase; 96.0 0.0028 9.7E-08 69.7 3.1 35 145-179 98-133 (693)
75 1g5h_A Mitochondrial DNA polym 95.8 0.016 5.3E-07 60.7 7.6 131 146-292 60-216 (454)
76 2rhq_B Phenylalanyl-tRNA synth 95.7 0.054 1.8E-06 60.5 11.9 112 151-292 495-631 (795)
77 2k50_A Replication factor A re 95.7 0.042 1.5E-06 46.0 8.6 81 28-115 15-105 (115)
78 3l4g_B Phenylalanyl-tRNA synth 95.5 0.043 1.5E-06 59.3 9.9 112 152-292 394-521 (589)
79 1nnx_A Protein YGIW; structura 95.4 0.055 1.9E-06 45.1 8.1 84 12-114 26-109 (109)
80 3ig2_A Phenylalanyl-tRNA synth 95.1 0.045 1.5E-06 51.2 7.6 113 152-292 7-150 (213)
81 2pi2_A Replication protein A 3 94.5 0.27 9.1E-06 47.7 11.6 99 10-114 47-151 (270)
82 3ica_A Phenylalanyl-tRNA synth 93.9 0.14 4.7E-06 47.8 7.8 115 152-292 7-150 (213)
83 2kbn_A Conserved protein; nucl 93.7 0.6 2.1E-05 38.6 10.6 87 13-118 7-97 (109)
84 3au7_A TIAS, putative uncharac 93.2 0.71 2.4E-05 47.0 12.1 77 28-115 283-362 (402)
85 3kf8_A Protein STN1; OB fold; 92.9 0.86 2.9E-05 42.5 11.3 86 28-115 84-185 (220)
86 2k75_A Uncharacterized protein 92.8 1.3 4.4E-05 36.4 11.1 88 12-122 4-100 (106)
87 4gop_A Putative uncharacterize 92.6 0.47 1.6E-05 39.7 8.3 68 27-108 16-83 (114)
88 1o7i_A SSB, SSO2364, single st 91.6 1 3.6E-05 37.7 9.4 75 30-116 13-97 (119)
89 3kdf_A Replication protein A 1 91.5 0.86 2.9E-05 38.5 8.8 71 27-115 20-90 (121)
90 1b7y_B Phers, protein (phenyla 90.3 1.2 4E-05 49.6 10.8 107 149-292 489-619 (785)
91 2pi2_E Replication protein A 1 90.2 1.4 4.9E-05 38.2 9.1 89 1-114 22-110 (142)
92 3fhw_A Primosomal replication 90.0 0.78 2.7E-05 38.5 7.0 57 61-121 49-105 (115)
93 1ynx_A Replication factor-A pr 88.9 0.64 2.2E-05 38.7 5.7 92 11-116 4-110 (114)
94 3hy0_A Alanyl-tRNA synthetase; 87.0 4.7 0.00016 41.3 11.7 28 455-482 232-259 (441)
95 2hpi_A DNA polymerase III alph 81.2 1.8 6.2E-05 50.2 6.4 80 27-115 1040-1124(1220)
96 3od1_A ATP phosphoribosyltrans 80.3 0.67 2.3E-05 47.4 2.2 49 403-473 281-330 (400)
97 1jmc_A Protein (replication pr 79.5 3.1 0.0001 39.1 6.5 93 10-116 7-114 (246)
98 1j6q_A Cytochrome C maturation 77.4 29 0.001 29.6 11.3 91 12-120 13-111 (136)
99 3k8a_A Putative primosomal rep 76.3 4.4 0.00015 33.1 5.6 47 61-112 55-101 (103)
100 1sr3_A APO-CCME; OB fold, beta 71.6 35 0.0012 29.2 10.3 77 26-120 25-106 (136)
101 3mxn_B RECQ-mediated genome in 69.7 22 0.00075 30.7 8.5 74 28-114 57-130 (150)
102 3f2b_A DNA-directed DNA polyme 68.0 35 0.0012 39.0 12.2 91 12-115 8-104 (1041)
103 4gs3_A Single-stranded DNA-bin 66.7 51 0.0018 26.9 10.3 79 28-113 10-106 (107)
104 1txy_A Primosomal replication 66.6 13 0.00043 30.1 6.3 50 61-114 50-102 (104)
105 1wjj_A Hypothetical protein F2 66.1 39 0.0013 29.2 9.6 85 12-115 17-120 (145)
106 2k52_A Uncharacterized protein 62.0 45 0.0015 25.2 8.4 48 33-89 8-55 (80)
107 4gop_C Putative uncharacterize 60.4 10 0.00034 39.1 5.7 93 11-116 3-109 (444)
108 3lc0_A Histidyl-tRNA synthetas 59.6 2.5 8.6E-05 43.9 0.9 19 454-472 333-351 (456)
109 3pco_B Phenylalanyl-tRNA synth 59.3 16 0.00054 40.6 7.3 110 154-292 494-627 (795)
110 2fxq_A Single-strand binding p 57.7 24 0.00083 33.4 7.5 82 29-114 128-229 (264)
111 3f1z_A Putative nucleic acid-b 57.7 36 0.0012 27.0 7.0 71 25-97 45-120 (133)
112 1h4v_B Histidyl-tRNA synthetas 57.5 7.9 0.00027 39.3 4.3 18 455-472 301-318 (421)
113 1v1q_A Primosomal replication 57.1 44 0.0015 28.4 8.2 52 61-115 67-120 (134)
114 1z7m_A ATP phosphoribosyltrans 57.0 4.5 0.00016 40.2 2.3 47 403-471 288-335 (344)
115 3en2_A Probable primosomal rep 55.3 26 0.00089 28.3 6.1 46 61-110 50-95 (101)
116 3net_A Histidyl-tRNA synthetas 54.6 4.7 0.00016 41.9 2.0 48 403-472 309-360 (465)
117 2b29_A Replication protein A 7 51.3 68 0.0023 26.7 8.4 61 50-115 47-108 (123)
118 1j5w_A Glycyl-tRNA synthetase 50.9 7.7 0.00026 36.8 2.5 57 400-481 134-191 (298)
119 3pgz_A Single-stranded DNA-bin 50.5 62 0.0021 29.3 8.5 82 30-115 27-138 (193)
120 3vdy_A SSB, single-stranded DN 50.4 23 0.0008 29.0 5.3 51 61-115 52-109 (116)
121 3rf1_A Glycyl-tRNA synthetase 50.1 8.4 0.00029 36.8 2.7 58 400-483 146-205 (311)
122 3rac_A Histidine-tRNA ligase; 46.8 8.2 0.00028 38.8 2.3 47 403-471 317-364 (373)
123 2kct_A Cytochrome C-type bioge 44.5 1.2E+02 0.004 24.1 10.8 75 27-117 6-87 (94)
124 4g84_A Histidine--tRNA ligase, 44.0 7.8 0.00027 39.8 1.6 18 454-471 335-352 (464)
125 2khj_A 30S ribosomal protein S 43.9 14 0.00047 30.0 2.8 78 1-89 1-85 (109)
126 4e51_A Histidine--tRNA ligase; 42.3 10 0.00035 39.4 2.2 19 454-472 327-345 (467)
127 2k4k_A GSP13, general stress p 41.6 51 0.0018 27.6 6.2 48 33-89 10-61 (130)
128 3tqy_A Single-stranded DNA-bin 40.8 34 0.0012 29.8 5.1 52 61-115 58-115 (158)
129 4g85_A Histidine-tRNA ligase, 40.0 12 0.00041 39.2 2.3 18 454-471 388-405 (517)
130 1wu7_A Histidyl-tRNA synthetas 39.3 11 0.00038 38.4 1.9 20 454-473 305-324 (434)
131 2i4l_A Proline-tRNA ligase; al 39.1 8.8 0.0003 39.7 1.1 19 454-472 330-349 (458)
132 2vw9_A Single-stranded DNA bin 38.1 43 0.0015 28.3 5.2 51 61-115 51-108 (134)
133 1z9f_A Single-strand binding p 37.3 47 0.0016 28.8 5.4 51 61-115 65-122 (153)
134 1htt_A Histidyl-tRNA synthetas 36.7 12 0.0004 38.0 1.6 18 455-472 300-317 (423)
135 3ull_A DNA binding protein; DN 36.2 31 0.0011 29.0 3.9 36 80-115 86-127 (132)
136 2khi_A 30S ribosomal protein S 34.2 64 0.0022 26.2 5.5 51 28-89 30-85 (115)
137 1yfs_A Alanyl-tRNA synthetase; 34.1 16 0.00055 37.6 2.1 49 243-292 59-117 (465)
138 2ztg_A Alanyl-tRNA synthetase; 34.1 8.9 0.0003 42.1 0.2 67 399-483 195-266 (739)
139 2j3l_A Prolyl-tRNA synthetase; 33.6 12 0.00042 39.7 1.1 19 454-472 435-454 (572)
140 1gm5_A RECG; helicase, replica 32.3 54 0.0018 36.3 6.1 61 28-95 164-230 (780)
141 3ulp_A Single-strand binding p 31.2 69 0.0024 26.4 5.3 51 61-114 56-119 (124)
142 2a19_A EIF-2- alpha, eukaryoti 31.0 87 0.003 27.7 6.2 55 28-89 15-71 (175)
143 1qe0_A Histidyl-tRNA synthetas 30.3 13 0.00045 37.6 0.7 17 455-471 302-318 (420)
144 2eqs_A ATP-dependent RNA helic 29.1 1.2E+02 0.0041 24.0 6.2 54 28-89 12-70 (103)
145 2zze_A Alanyl-tRNA synthetase; 28.7 15 0.00051 40.4 0.8 28 455-483 245-272 (752)
146 1kl9_A Eukaryotic translation 28.3 90 0.0031 27.8 5.8 54 28-89 15-71 (182)
147 3lgj_A Single-stranded DNA-bin 27.6 1E+02 0.0034 27.2 5.9 84 29-115 23-135 (169)
148 1qzg_A Protection of telomeres 27.5 3.3E+02 0.011 24.3 10.7 77 12-97 30-118 (187)
149 2cqo_A Nucleolar protein of 40 26.3 48 0.0017 27.3 3.4 52 28-89 22-77 (119)
150 1wi5_A RRP5 protein homolog; S 26.0 1.5E+02 0.005 24.1 6.4 64 33-105 24-91 (119)
151 3koj_A Uncharacterized protein 25.4 1.1E+02 0.0037 24.8 5.3 76 30-110 12-107 (108)
152 1luz_A Protein K3, protein K2; 22.6 2.6E+02 0.0089 21.4 7.4 53 27-89 10-66 (88)
153 2vl6_A SSO MCM N-TER, minichro 22.6 1.5E+02 0.0051 27.8 6.6 35 80-114 225-267 (268)
154 1qvc_A Single stranded DNA bin 21.9 85 0.0029 26.8 4.2 53 60-115 54-115 (145)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=8.2e-105 Score=833.55 Aligned_cols=424 Identities=29% Similarity=0.497 Sum_probs=381.4
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~ 85 (491)
.++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..++.++. |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 368999999865 68999999999999999999999999999974 999999764 23566777 999999
Q ss_pred EEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccc---cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHH
Q 011197 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (491)
Q Consensus 86 V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~---~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff 162 (491)
|.|+|+|+++++..|++||+|++++|||+|..++|++.+. ++.+.++++||||+|++.++++|++||++++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998779988654 6788888999999999999999999999999999999
Q ss_pred hhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhc
Q 011197 163 QENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYAT 241 (491)
Q Consensus 163 ~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~ 241 (491)
.++||+||+||+|++++|||+++.|++ +||++++||+|||||||| ++++
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~------------------------------~~~~~~~yL~~Spql~~q~l~~~ 201 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPM------------------------------KYFEEDAFLAQSPQLYKQIMMAS 201 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEE------------------------------EETTEEEEECSCSHHHHHHGGGT
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeE------------------------------eeCCccEEEecChHHHHHHHHhc
Confidence 999999999999999999999999976 567899999999999997 6679
Q ss_pred cCCceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchh
Q 011197 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGI 320 (491)
Q Consensus 242 g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 320 (491)
|++||||||||||||+++++||+|||||||||++|+| ++|+|+++|+||++ +++.+.+.+..++.+.+..
T Consensus 202 g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~----~~~~v~~~~~~~l~~~~~~----- 272 (438)
T 3nem_A 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAH----AINYVREHNAKELDILNFE----- 272 (438)
T ss_dssp TCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHH----HHHHHHHHCHHHHHHTTCC-----
T ss_pred CCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHH----HHHHHHhhhhhhHhhcccc-----
Confidence 9999999999999999988999999999999999999 99999999999999 9998887765555443321
Q ss_pred hhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccc---cCccEEEEeCCCCCcccccccCC
Q 011197 321 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQND 397 (491)
Q Consensus 321 ~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~---~~~p~~i~~~P~~~~pf~~~~~~ 397 (491)
+ +....||+|+||.||++++++.|.+ +.||.+++.++|++|.+.+. ..+|+||+|||.+++|||++.++
T Consensus 273 ---l-~~~~~pf~rity~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~ 344 (438)
T 3nem_A 273 ---L-EEPKLPFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYD 344 (438)
T ss_dssp ---C-CCCCSSCCEEEHHHHHHHHHHTTCC----CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCT
T ss_pred ---c-ccCCCCceEEEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCC
Confidence 1 1245689999999999999988754 46888999999998876442 13899999999999999876654
Q ss_pred -CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCc
Q 011197 398 -DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476 (491)
Q Consensus 398 -~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~I 476 (491)
++.+++|||||++| +||+|||+|++|+++|.+++++.|++++.++|||+|++||+|||||||||||||+|++||.+||
T Consensus 345 ~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~I 423 (438)
T 3nem_A 345 NKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNI 423 (438)
T ss_dssp TSTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCG
T ss_pred CCCCceEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcH
Confidence 45789999999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC
Q 011197 477 RDAIPFPRTPGSVE 490 (491)
Q Consensus 477 rdvi~FPr~~~~~~ 490 (491)
|||++|||+++||.
T Consensus 424 rdvi~FPr~~~rl~ 437 (438)
T 3nem_A 424 REVILFPRDRRRLT 437 (438)
T ss_dssp GGGSSSCCCSSCCC
T ss_pred HHcccCCCCccCCC
Confidence 99999999999984
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=5.4e-104 Score=831.19 Aligned_cols=425 Identities=30% Similarity=0.529 Sum_probs=364.4
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~ 87 (491)
.++.|+++. ++.|++|+|+|||+++|++| +++|++|||++|. ||||++++. .....+.. |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 357899983 36899999999999999995 6999999999974 999999743 22222445 99999999
Q ss_pred EEEEEEecCCCc--------eeEEEEEeeEEEEccCCCCCCCC-ccccChhhhccCccccCCChHHHHHHHHHHHHHHHH
Q 011197 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPIQ-KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (491)
Q Consensus 88 V~G~v~~~~~~~--------~~~el~~~~i~ils~~~~~~P~~-~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~i 158 (491)
|+|+|++++.+. |++||+|++++||++|+.+.|-. .+.++.++++++||||+|++.++++|++||++++++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999886532 78999999999999997433211 234677888899999999999999999999999999
Q ss_pred HHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHH
Q 011197 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238 (491)
Q Consensus 159 R~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql 238 (491)
|+||.++||+||+||+|++++|||++++|.+ +||++++||+||||||||+
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------~~~~~~~~L~~SpqL~lq~ 216 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE------------------------------EETTEEEEECSCCHHHHHT
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------cccCCCcccccCHHHHHHH
Confidence 9999999999999999999999999999865 7899999999999999996
Q ss_pred HhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcc
Q 011197 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEK 318 (491)
Q Consensus 239 ~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 318 (491)
+++|++||||||||||||+++|+||||||||||||++|+|++|+|+++|+||++ +++.+.+.+...+.....
T Consensus 217 l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~----~~~~v~~~~~~~~~~~~~---- 288 (456)
T 3m4p_A 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCT----VIDNVMAVHGDKIRKMNP---- 288 (456)
T ss_dssp THHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCT----
T ss_pred HHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHH----HHHHHhhhhhhhHhhcCc----
Confidence 667899999999999999998999999999999999999999999999999999 888877654322111110
Q ss_pred hhhhhhhhhhcCCCccccHHHHHHHHHHhccccc-cccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC
Q 011197 319 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 397 (491)
Q Consensus 319 ~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~-~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~ 397 (491)
+ + +....||+|+||.||++++++.|++.+ ....||.+++.++|++|.+.+ . +|+||+|||++++|||++.++
T Consensus 289 ~----~-~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~ 361 (456)
T 3m4p_A 289 H----L-KLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVP 361 (456)
T ss_dssp T----C-CCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEET
T ss_pred c----c-ccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCC
Confidence 0 0 123568999999999999998887543 345789999999999999864 4 899999999999999877654
Q ss_pred -CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCc
Q 011197 398 -DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476 (491)
Q Consensus 398 -~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~I 476 (491)
|+.+++|||||++|+|||+|||+|++|+++|.+++++.|++++.|+|||++++||+|||||||||||||+|++||.+||
T Consensus 362 ~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~I 441 (456)
T 3m4p_A 362 GHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHI 441 (456)
T ss_dssp TEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCG
T ss_pred CCCCeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC
Q 011197 477 RDAIPFPRTPGSVE 490 (491)
Q Consensus 477 rdvi~FPr~~~~~~ 490 (491)
|||++|||+|+||.
T Consensus 442 rdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 442 RKVCLYPRYLERCE 455 (456)
T ss_dssp GGGSSSCBBTTBCC
T ss_pred HHeeccCCCCCCCC
Confidence 99999999999985
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.6e-101 Score=809.21 Aligned_cols=420 Identities=30% Similarity=0.571 Sum_probs=363.5
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G 90 (491)
+|+|+. ++.|++|+|+|||+++|++| +++|++|||++|. ||||++++. ..|+.. . |+.||+|.|+|
T Consensus 2 ~i~~~~-------~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLV-------KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGG-------GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhh-------hcCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 466664 26899999999999999995 7999999999974 999998542 234433 6 99999999999
Q ss_pred EEEecC---CCceeEEEEEeeEEEEccCCCC--CCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhC
Q 011197 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (491)
Q Consensus 91 ~v~~~~---~~~~~~el~~~~i~ils~~~~~--~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (491)
+|++++ +++|++||+|++++||+++.+. +|++++.++.+.++++||||+|++.++++|++||++++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999977 4457899999999999986432 67777778888888999999999999999999999999999999999
Q ss_pred CcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCc
Q 011197 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (491)
Q Consensus 166 ~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~r 245 (491)
||+||+||+|++++++|+++.|.+ +||++++||+||||||||++++|++|
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~------------------------------~~~g~~~~L~~SpqLylq~l~~g~~r 199 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL------------------------------DYFGEQSFLTQSSQLYLETCIPTLGD 199 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHCS
T ss_pred CCEEEECCeEeeccCCCchhceee------------------------------ccCCcccccCCChHHHHHHhhhccCc
Confidence 999999999999999999999965 67899999999999999866678999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 325 (491)
|||||||||||+++++||+|||||||||++|+|++|+|+++|+||++ +++.+.+.+..+ .. .+.+.
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~----~~~~v~~~~~~~-~~---------~~~~~ 265 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCD----TVDRLLADEEAK-KL---------LEHIN 265 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHTSHHHH-HH---------HHHHS
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHH----HHHHHhccccch-hh---------hhhcc
Confidence 99999999999998899999999999999999999999999999999 888876543110 00 00111
Q ss_pred h---hhcCCCccccHHHHHHHHHHhcccccc--ccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CC
Q 011197 326 T---VAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DG 399 (491)
Q Consensus 326 ~---~~~~~~~~it~~ea~~~l~~~~~~~~~--~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~ 399 (491)
. ....||+|+||.||++++++.++..+. ...||.++...+|++|.+.+ . +|+||+|||.+++|||++.++ ++
T Consensus 266 ~~~~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p 343 (435)
T 2xgt_A 266 PKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDN 343 (435)
T ss_dssp TTCCCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCT
T ss_pred ccccccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCc
Confidence 0 123589999999999999887654322 35688999999999998765 3 799999999999999887665 45
Q ss_pred CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011197 400 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 400 ~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdv 479 (491)
.+++|||||++|+|||+|||+|+||+++|.+++++.|++++.++|||+|++||+|||||||||+|||+|++||.+|||||
T Consensus 344 ~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdv 423 (435)
T 2xgt_A 344 TLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDV 423 (435)
T ss_dssp TBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred CeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q 011197 480 IPFPRTPGSVE 490 (491)
Q Consensus 480 i~FPr~~~~~~ 490 (491)
|+|||++++|.
T Consensus 424 i~FPr~~~~~~ 434 (435)
T 2xgt_A 424 CLYPRFVGRCV 434 (435)
T ss_dssp SSSCCBTTBCC
T ss_pred ecccCCcCCCC
Confidence 99999999986
No 4
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-101 Score=806.51 Aligned_cols=423 Identities=30% Similarity=0.470 Sum_probs=380.8
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 46889999764 68999999999999999999999999999974 99999876555666777 9999999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccc---cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCC
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~---~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~ 166 (491)
|+|.+++++.|++||+|++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++||++++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997779988765 78888889999999999999999999999999999999999
Q ss_pred cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCce
Q 011197 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246 (491)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rv 246 (491)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|+|++++|++||
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rv 202 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVERV 202 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE------------------------------EETTEEEEECSCCHHHHHHHHHHHSEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE------------------------------ecCCceEEecCCcHHHHHHHHhCcCce
Confidence 99999999999999999999976 467889999999999998788899999
Q ss_pred EEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhh
Q 011197 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLST 326 (491)
Q Consensus 247 feI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 326 (491)
||||||||+|+++++||+|||||||||++|.|++|+|+++|+|+++ +++.+.+++..++++.+.. + +
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~----l~~~~~~~~~~~l~~~~~~--------~-~ 269 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHN----IVKTIKEEGKEELKILNYE--------P-P 269 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHHHTHHHHHHHTCC--------C-C
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHH----HHHHHhccchhhhhhcccc--------c-c
Confidence 9999999999998889999999999999999999999999999999 9888877665555443321 0 0
Q ss_pred hhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEE
Q 011197 327 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAM 405 (491)
Q Consensus 327 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~f 405 (491)
.++.||+|+||.||++++++.|.+ ..||.++...+|++|.+.+.. +|+||+|||.+++|||++.++ ++.++++|
T Consensus 270 ~l~~pf~rity~eA~~~~~~~g~~----~~~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~f 344 (429)
T 1wyd_A 270 EVKIPIKRLKYTEAIEILRSKGYN----IKFGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESF 344 (429)
T ss_dssp CCCSSCEEEEHHHHHHHHHHSSCC----CCTTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEE
T ss_pred cCCCCccEEEHHHHHHHHHhcCCC----cccCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEE
Confidence 124689999999999999877643 468889999999998875543 699999999999999876654 44589999
Q ss_pred EEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCC
Q 011197 406 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485 (491)
Q Consensus 406 dl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~ 485 (491)
|||++|+ ||+|||+|+||++.|+++++++|++++.|+|||+|++||+|||||||||||||+|++||.+||||||+||++
T Consensus 345 Dl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~ 423 (429)
T 1wyd_A 345 DLIYKFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423 (429)
T ss_dssp EEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCB
T ss_pred EEEECCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCC
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011197 486 PGSVEF 491 (491)
Q Consensus 486 ~~~~~~ 491 (491)
+++|.+
T Consensus 424 ~~~~~p 429 (429)
T 1wyd_A 424 KKRLTP 429 (429)
T ss_dssp TTBCCC
T ss_pred CCCCCC
Confidence 999864
No 5
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=1.2e-100 Score=814.36 Aligned_cols=427 Identities=26% Similarity=0.392 Sum_probs=353.0
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc----cchhhhhhcCCCCCc
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGA 84 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~~~~~L~~gd 84 (491)
+.++.|++|... +.|++|+|+|||+++|.+||++|++|||++| +||||++++. ..++.++. |+.||
T Consensus 48 ~~~~~i~~l~~~------~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es 117 (548)
T 3i7f_A 48 LKYTEIEELVPA------MAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAES 117 (548)
T ss_dssp CCBCCGGGCSGG------GTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTE
T ss_pred CceEEhhhcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCC
Confidence 356888888753 7899999999999999999999999999996 5999998732 12344566 99999
Q ss_pred EEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCCCCCCCccc----------------------------------
Q 011197 85 SIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------------------------- 125 (491)
Q Consensus 85 ~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~~~P~~~~~---------------------------------- 125 (491)
+|.|+|+|++++. ..|++||+|++|+|||+|..++|++.++
T Consensus 118 ~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (548)
T 3i7f_A 118 ICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDL 197 (548)
T ss_dssp EEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC----------------
T ss_pred EEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccc
Confidence 9999999999874 3578999999999999998778987321
Q ss_pred ------------------------cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC
Q 011197 126 ------------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181 (491)
Q Consensus 126 ------------------------~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e 181 (491)
.+.+.+.++||||+|++.++++|++||++++++|+||.++||+||+||+|++++||
T Consensus 198 ~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~e 277 (548)
T 3i7f_A 198 TKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSE 277 (548)
T ss_dssp ---------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC-----
T ss_pred ccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCC
Confidence 23344558999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCC
Q 011197 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNT 260 (491)
Q Consensus 182 g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t 260 (491)
|++++|.+ +||+.++||+|||||||| ++++|++||||||||||||+++|
T Consensus 278 gga~~F~v------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t 327 (548)
T 3i7f_A 278 GGSNIFEV------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNT 327 (548)
T ss_dssp --------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCS
T ss_pred CCcceeEE------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCC
Confidence 99999975 678899999999999985 88999999999999999999999
Q ss_pred CcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHH
Q 011197 261 SRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 339 (491)
Q Consensus 261 ~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 339 (491)
+||||||||||||++|. |++++|+++|+||++ +++.+.+.+..++..+....+. ..+ .-.||+++||.|
T Consensus 328 ~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~----i~~~~~~~~~~el~~~~~~~~~---~~~---~~~pf~rit~~e 397 (548)
T 3i7f_A 328 RRHLTEFEGLDIEMEIVENYHECIDVMEKLFTF----IFDEIPKRFPDELKVIRKQYPF---EDL---IYRPFLRLTYKE 397 (548)
T ss_dssp SSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHH----HHHHHHHHCHHHHHHHHHHSCC---CCC---CCCSCEEEEHHH
T ss_pred CCcchhhhchhhhhhhhcCHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHhhhcCCc---ccc---ccCCcceeEHHH
Confidence 99999999999999998 799999999999999 9888877666555443221110 001 115899999999
Q ss_pred HHHHHHHhccccccccccccccchHHhhhhccc---cccCccEEEEeCCCCCcccccccC-CCCCceEEEEEEeCCeeEe
Q 011197 340 AIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGEL 415 (491)
Q Consensus 340 a~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~---~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi 415 (491)
|++++++.|++ ..|+.+++.++|++|.+. .++..++||+|||.+++|||++.+ +++.+++|||||++| +||
T Consensus 398 ai~~l~~~g~~----~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei 472 (548)
T 3i7f_A 398 AIEMLRASGET----IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEI 472 (548)
T ss_dssp HHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEE
T ss_pred HHHHHHHcCCC----CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEE
Confidence 99999988865 357789999999887642 233245678899999999987655 456789999999999 599
Q ss_pred echhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 416 IGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 416 ~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+|||+|++|+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||..|||||++|||+|+||.
T Consensus 473 ~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 473 TSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp EEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred eeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 6
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=9.5e-100 Score=796.53 Aligned_cols=425 Identities=36% Similarity=0.602 Sum_probs=383.0
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (491)
++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999764 68999999999999999999999999999974 999997542 34666667 9999999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCC--CccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~--~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (491)
.|+|+|.+++++.|++||+|++++|||+| .++|+ +.+.++.+.++++||||+|++.+++++++|+++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66998 6667888888899999999999999999999999999999999
Q ss_pred CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCC
Q 011197 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (491)
Q Consensus 165 ~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~ 244 (491)
+||+||+||+|+++++++++++|.+ +|++.++||+||||+|+|++++|++
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHS
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE------------------------------eecCCcEEeccChHHHHHHHhcCcc
Confidence 9999999999999999999999976 5678899999999999987888999
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhh
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRL 324 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l 324 (491)
|||+||||||+|+++++||+|||||||||++|.|++|+|+++|+|+++ +++.+.+++..++++.+... +.+
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~----l~~~v~~~~~~~i~~~~~~~-----~~~ 272 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSY----MVQRTLELRKKEIEMFRDDL-----TTL 272 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHHHCHHHHHTTCSCC-----HHH
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHH----HHHHHhhhchhhhhhcCccc-----ccc
Confidence 999999999999998889999999999999999999999999999999 99888877766676655321 112
Q ss_pred hhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceE
Q 011197 325 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVA 403 (491)
Q Consensus 325 ~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~ 403 (491)
. .++.||+|+||.||++++++.|.+ +.||.+++..+|++|.+.+. +|+||+|||.+++|||++.++ ++.+++
T Consensus 273 ~-~~~~pf~rity~ea~~~~~~~g~~----~~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~ 345 (434)
T 1x54_A 273 K-NTEPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVL 345 (434)
T ss_dssp H-TCCSSCCEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEE
T ss_pred c-ccCCCCcEEEHHHHHHHHHhcCCC----cccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEE
Confidence 2 246699999999999999887754 46888999999999987653 799999999999999876554 456899
Q ss_pred EEEEEeC-CeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccc
Q 011197 404 AMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 404 ~fdl~~~-G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
+||||++ |+|||+|||+|+||++.|+++++++|++++.|+|||+|++||+|||||||||||||+|++||.+|||||++|
T Consensus 346 ~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~F 425 (434)
T 1x54_A 346 ASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALF 425 (434)
T ss_dssp EEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSS
T ss_pred EEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 011197 483 PRTPGSVEF 491 (491)
Q Consensus 483 Pr~~~~~~~ 491 (491)
|+++++|..
T Consensus 426 P~~~~~~~p 434 (434)
T 1x54_A 426 PRTPARLYP 434 (434)
T ss_dssp CCBTTBCCC
T ss_pred cCcCCCCCC
Confidence 999999863
No 7
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=8.4e-100 Score=793.67 Aligned_cols=411 Identities=26% Similarity=0.425 Sum_probs=316.3
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC-CCcEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~-~gd~V~V~ 89 (491)
+++|++|. . +.|++|+|+|||+++|.+||++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788887 3 68999999999999999999999999999974 9999985 34 99 99999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccc----cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhC
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~----~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (491)
|+|.+++++.|++||+|++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++|+++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997779988765 7788888999999999999999999999999999999999
Q ss_pred CcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCc
Q 011197 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (491)
Q Consensus 166 ~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~r 245 (491)
||+||+||+|+++++++++++|.+ +|+++++||+||||+|+|++++|++|
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~------------------------------~~~g~~~~L~~Spel~~~~l~~g~~r 192 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFER 192 (422)
T ss_dssp TCEECCCC----------------------------------------------------------CHHHHHHHHHHHSE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCc
Confidence 999999999999999999999975 46788899999999999866688999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRL 324 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l 324 (491)
|||||||||+|+++++||+|||||||||++|+ |++|+|+++|+|+++ +++.+.+++..++++.+...
T Consensus 193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~----l~~~~~~~~~~~i~~~~~~~-------- 260 (422)
T 1n9w_A 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAE----MLEEALNTAGDEIRLLGATW-------- 260 (422)
T ss_dssp EEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHH----HHHHHHHHSHHHHHHTTCCC--------
T ss_pred eeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHH----HHHHHhccchhhhhhcCccc--------
Confidence 99999999999998889999999999999999 999999999999999 98888776665555443210
Q ss_pred hhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccc---cCccEEEEeCCCCCcccccccCCCCCc
Q 011197 325 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRT 401 (491)
Q Consensus 325 ~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~---~~~p~~i~~~P~~~~pf~~~~~~~~~~ 401 (491)
+....||+|+||.||++++++.+ ...||.++...+|++|.+.+. +.+|+||+|||..++|||++.+++ .+
T Consensus 261 -~~~~~pf~rity~eA~~~~~~~~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~ 333 (422)
T 1n9w_A 261 -PSFPQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GT 333 (422)
T ss_dssp -CCCSSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SB
T ss_pred -cccCCCcceeEHHHHHHHHHhcC-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CE
Confidence 01115899999999999998766 256788899988888875432 236999999999999999988776 78
Q ss_pred eEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 402 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 402 ~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+++||||++|+ ||+|||+|+||+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||.+||||||+
T Consensus 334 ~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~ 412 (422)
T 1n9w_A 334 TRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARA 412 (422)
T ss_dssp BSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCS
T ss_pred EEEEEEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEe
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 011197 482 FPRTPGSVE 490 (491)
Q Consensus 482 FPr~~~~~~ 490 (491)
||+++++|.
T Consensus 413 FPr~~~~~~ 421 (422)
T 1n9w_A 413 FPRDRHRLT 421 (422)
T ss_dssp CC-------
T ss_pred cCCCCCCCC
Confidence 999999986
No 8
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=4.8e-98 Score=797.75 Aligned_cols=441 Identities=17% Similarity=0.252 Sum_probs=360.2
Q ss_pred CCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc----cchhhh-h
Q 011197 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQV-K 76 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~-~ 76 (491)
.+|.++++++++...|.+ ++...+++|+|+|||+++|.+| |++|++|||++| .||||++++. ..|+.+ +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~ 106 (521)
T 3bju_A 29 HKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFIHINN 106 (521)
T ss_dssp SCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHHHHHH
T ss_pred CcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHHHHHh
Confidence 468889999999876642 3445688999999999999999 999999999995 5999998653 245543 5
Q ss_pred hcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcc-ccChhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 77 ~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~-~~~~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
. |+.||+|.|+|+|.+++++ ++||+|++++||++|..++|...+ ..+.+...++||||+| ++.++++|++||+|
T Consensus 107 ~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i 182 (521)
T 3bju_A 107 K--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182 (521)
T ss_dssp H--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHH
T ss_pred c--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHH
Confidence 6 9999999999999999864 899999999999999866775533 2456666699999999 89999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|.+ ++ +||+.++||+|||||
T Consensus 183 ~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t-~~---------------------------~~~~~~~yL~~SpqL 234 (521)
T 3bju_A 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFIT-YH---------------------------NELDMNLYMRIAPEL 234 (521)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEE-EE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCceeeccCCCccccceee-ec---------------------------ccCCcceEeeCCHHH
Confidence 99999999999999999999999887777899954 32 578999999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE------ 307 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~------ 307 (491)
||| |+++|++||||||||||||++++ ||||||||||||++|+||+|+|+++|+||++ +++.+.+++.-
T Consensus 235 ~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~----v~~~v~~~~~~~~~~~~ 309 (521)
T 3bju_A 235 YHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSG----MVKHITGSYKVTYHPDG 309 (521)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHSSSEEEECTTC
T ss_pred HHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHH----HHHHHhCCceEEecccc
Confidence 996 78999999999999999999965 9999999999999999999999999999999 99988875421
Q ss_pred ------cccccchhhcchhhhhhhhhhcCCCc---cccHHHHHHHH----HHhccccccccccccccchHHhhhhccccc
Q 011197 308 ------DMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIELL----IKAKKKFEFLVKWGCDLQSEHERYLTEEAF 374 (491)
Q Consensus 308 ------~l~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~~l----~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 374 (491)
++++..+|.+.++.++++.+.+.+++ .++..++.+.| ++.++.+.....||..++..+++++.+.+.
T Consensus 310 ~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~ 389 (521)
T 3bju_A 310 PEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI 389 (521)
T ss_dssp TTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCC
T ss_pred cccccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 11222233333444444443333332 12222222221 222332222345666777888998887654
Q ss_pred cCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc------CCCccc--HHHHH
Q 011197 375 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYL 446 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~------g~~~~~--~~~yl 446 (491)
+|+||+|||.+++|||++.++++.+++|||||++|. ||+|||+|++|+..|++++++. |.+++. ++|||
T Consensus 390 --~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl 466 (521)
T 3bju_A 390 --NPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFC 466 (521)
T ss_dssp --SCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHH
T ss_pred --CcEEEECCccccCcccccCCCCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHH
Confidence 799999999999999988777888999999999995 9999999999999999998754 777665 69999
Q ss_pred HHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 447 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 447 ~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+|++||+|||||||||||||+|++||.+||||||+||+.+..
T Consensus 467 ~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 467 TALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred HHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 999999999999999999999999999999999999999864
No 9
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=2.3e-97 Score=788.07 Aligned_cols=432 Identities=24% Similarity=0.397 Sum_probs=366.9
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCe-EEEEEEcCCCccceEEEEeCCc------cchhhhhhcCCC
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLIT 81 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl-~Fi~LrD~~g~~~iQvv~~~~~------~~~~~~~~~~L~ 81 (491)
+++++|++|... ++.|++|+|+|||+++|++||+ +|++|||++| .||||++++. ..++.++. |+
T Consensus 21 ~~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~ 91 (487)
T 1eov_A 21 QKRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LN 91 (487)
T ss_dssp CCCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CC
T ss_pred cceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CC
Confidence 345678888642 2689999999999999999997 9999999996 5999998651 22445666 99
Q ss_pred CCcEEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCCCCCCCccc---------------cChhhhccCccccCCC
Q 011197 82 TGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRT 141 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~~~P~~~~~---------------~~~~~~r~~~~l~~R~ 141 (491)
.||+|.|+|+|.+++. +.|++||+|++++|||+|..++|++.++ .+.+.++++||||+|+
T Consensus 92 ~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~ 171 (487)
T 1eov_A 92 LESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRT 171 (487)
T ss_dssp TTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTS
T ss_pred CCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCC
Confidence 9999999999999984 3478999999999999998778886432 4556667999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
+.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +|
T Consensus 172 ~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------~~ 221 (487)
T 1eov_A 172 VTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TY 221 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------cc
Confidence 999999999999999999999999999999999999999999999976 45
Q ss_pred cCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVR 299 (491)
Q Consensus 222 f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~ 299 (491)
+++++||+||||+|+| +|++|++||||||||||||+++++||+|||||||||++|. +++|+|+++|+||++ +++
T Consensus 222 ~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~----l~~ 297 (487)
T 1eov_A 222 FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVF----IFS 297 (487)
T ss_dssp TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHH----HHH
T ss_pred CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHH----HHH
Confidence 6889999999999997 6789999999999999999998899999999999999997 699999999999999 888
Q ss_pred HHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccc---cccC
Q 011197 300 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGG 376 (491)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~---~~~~ 376 (491)
.+.+++..++..+....... .+.-..+.||++++|.||++++++.|.+ ..++.++...+++.|.+. .+..
T Consensus 298 ~v~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~ 370 (487)
T 1eov_A 298 ELPKRFAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDT 370 (487)
T ss_dssp HHHHHCHHHHHHHHHHSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhhchhHHHhhhhhcCCc---ceecccCCCeeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCC
Confidence 88776654443222111100 0000012378999999999999887764 345667888888877632 2333
Q ss_pred ccEEEEeCCCCCcccc-cccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcc--cHHHHHHHHhcCC
Q 011197 377 CPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGS 453 (491)
Q Consensus 377 ~p~~i~~~P~~~~pf~-~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~--~~~~yl~~~~~G~ 453 (491)
.|+||+|||..++||| ++.++|+.++++||||++|+ ||+|||+|+||++.|++++++.|++++ .++|||+|++||+
T Consensus 371 ~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~ 449 (487)
T 1eov_A 371 DFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 449 (487)
T ss_dssp SEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCC
T ss_pred CCEEEECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCC
Confidence 5789999999999996 44455667899999999995 999999999999999999999999988 7899999999999
Q ss_pred CCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 454 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
|||||||||||||+|++||.+||||||+|||+|++|..
T Consensus 450 PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~~r~~p 487 (487)
T 1eov_A 450 PPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 487 (487)
T ss_dssp CCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCCC
T ss_pred CCCeEEEEhHHHHHHHHcCCCcHHheeecCCCCCCCCC
Confidence 99999999999999999999999999999999999863
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=5.1e-97 Score=786.17 Aligned_cols=426 Identities=19% Similarity=0.295 Sum_probs=348.7
Q ss_pred CcccceeeccccCCcccCC----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchh-hhhhc
Q 011197 7 EFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKSG 78 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~-~~~~~ 78 (491)
+|.++++|.+|...|.+-. ...|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+ .++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~- 114 (504)
T 1e1o_A 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK- 114 (504)
T ss_dssp CCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGGG-
T ss_pred CCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHHHHhc-
Confidence 6888999999988754200 01288999999999999999999999999996 5999998763 3466 5667
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
|+.||+|.|+|+|.+++++ ++||+|++++||++|..++| .+.++ .+...++||||+| ++.++++|++||+|
T Consensus 115 -l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~plP--~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i 189 (504)
T 1e1o_A 115 -WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP--DKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKI 189 (504)
T ss_dssp -CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC--C-------TTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCCCCC--ccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHH
Confidence 9999999999999999875 89999999999999974445 45443 4555599999995 89999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||+|||||
T Consensus 190 ~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t-~~---------------------------~~~~~~~yL~~SpqL 241 (504)
T 1e1o_A 190 LAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT-HH---------------------------NALDLDMYLRIAPEL 241 (504)
T ss_dssp HHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEE-EE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEECCeEEecCCCCcccceEe-cc---------------------------CCCCceEEeccCHHH
Confidence 99999999999999999999998877777899964 32 567999999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFN 313 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~ 313 (491)
||| |+++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||++ +++.+.+++. +.+.+
T Consensus 242 ylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~----~~~~v~~~~~--i~~~~ 314 (504)
T 1e1o_A 242 YLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRT----LAQEVLGTTK--VTYGE 314 (504)
T ss_dssp HHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHSSSE--EEETT
T ss_pred HHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCce--eeeCC
Confidence 996 6889999999999999999995 59999999999999999999999999999999 9999987663 44322
Q ss_pred hhhcchhhhhhhhhhcCCCccccHHHHHHHHHH-h------------------ccccccccccccccchHHhhhhccccc
Q 011197 314 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-A------------------KKKFEFLVKWGCDLQSEHERYLTEEAF 374 (491)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~------------------~~~~~~~~~~g~~l~~~~e~~l~~~~~ 374 (491)
.. + .+..||+|+||.||++.+.. . |.++.....+|..+...++.++.+ .+
T Consensus 315 ~~--------i--~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~-~~ 383 (504)
T 1e1o_A 315 HV--------F--DFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEA-HL 383 (504)
T ss_dssp EE--------E--ETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGG-GC
T ss_pred Ee--------e--ccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhc-cC
Confidence 10 0 13457888888888877654 2 111111111222334445555544 44
Q ss_pred cCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-----CCCcccH---HHHH
Q 011197 375 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYL 446 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-----g~~~~~~---~~yl 446 (491)
. +|+||+|||.+++||||+.++|+.++++||||++|+ ||+|||+|+||++.|++++++. ..+++.+ +|||
T Consensus 384 ~-~p~fV~dyP~~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl 461 (504)
T 1e1o_A 384 I-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYV 461 (504)
T ss_dssp C-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHH
T ss_pred C-CeEEEECCCcccCcCcCCCCCCCCceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHH
Confidence 4 799999999999999988777778999999999998 9999999999999999998753 1233333 9999
Q ss_pred HHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 447 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 447 ~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+|++||+|||||||||||||+|+|||.+||||||+||+.+..
T Consensus 462 ~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 462 TALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 999999999999999999999999999999999999998763
No 11
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.1e-97 Score=784.65 Aligned_cols=427 Identities=20% Similarity=0.288 Sum_probs=350.2
Q ss_pred CCcccceeeccccCCcccCC----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhc
Q 011197 6 GEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~ 78 (491)
.+|.++++|.+|...|.+-. +..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~- 135 (529)
T 4ex5_A 59 NDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAFKK- 135 (529)
T ss_dssp CCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT-
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc-
Confidence 36888999999988764210 11378999999999999999999999999996 5999998753 23666777
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
|+.||+|.|+|+|.+++++ ++||+|++++|||+|. .|+|.+.++ .+...++||||+| ++.++++|++||+|
T Consensus 136 -l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i 210 (529)
T 4ex5_A 136 -WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210 (529)
T ss_dssp -CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 9999999999999998865 8999999999999997 455555443 3455589999997 89999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|. |++ ++|+.++||+|||||
T Consensus 211 ~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~SpqL 262 (529)
T 4ex5_A 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV-THH---------------------------NALDMEMFLRIAPEL 262 (529)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCE-EEE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCCeeeccCCCCcccccc-ccc---------------------------ccCCcceecccCHHH
Confidence 9999999999999999999999887776779995 433 567999999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFN 313 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~ 313 (491)
||| |+++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||++ +++.+.+++ ++.+.+
T Consensus 263 ylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~----v~~~v~~~~--~~~~~~ 335 (529)
T 4ex5_A 263 YLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQ----AAVDALGTA--TIQYQG 335 (529)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHSCS--EEEETT
T ss_pred HHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHH----HHHHHhCcC--ceecCc
Confidence 995 8899999999999999999995 79999999999999999999999999999999 999988764 333322
Q ss_pred hhhcchhhhhhhhhhcCCCccccHHHHHHHHHH-------------------hcccccccc--cccc-ccchHHhhhhcc
Q 011197 314 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-------------------AKKKFEFLV--KWGC-DLQSEHERYLTE 371 (491)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-------------------~~~~~~~~~--~~g~-~l~~~~e~~l~~ 371 (491)
.. -.+..||+|+||.||++.+.. .|++++... .|+. ++-.+++..+++
T Consensus 336 ~~----------id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE 405 (529)
T 4ex5_A 336 RE----------LDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAE 405 (529)
T ss_dssp EE----------EETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTG
T ss_pred ee----------eccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhc
Confidence 11 014568888999888876543 233222100 3332 333334344445
Q ss_pred ccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCcccH--H
Q 011197 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--W 443 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~~~--~ 443 (491)
..+. +|+||+|||.+++|||++.++++.+++|||||++|+ ||+|||+|++|+++|.+++.+ .|.+++.+ +
T Consensus 406 ~~l~-~P~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De 483 (529)
T 4ex5_A 406 AQLW-EPTFIIDYPIEVSPLARESDTVAGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA 483 (529)
T ss_dssp GGCC-SCEEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCH
T ss_pred cccC-CCEEEECCchhhCCCcccCCCCCCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchH
Confidence 5555 899999999999999987777778999999999996 999999999999999888854 34444332 8
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 444 ~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||+|++||+|||||||||||||+|++||.+|||||++||+...
T Consensus 484 ~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 484 DYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCC
T ss_pred HHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCC
Confidence 99999999999999999999999999999999999999999764
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1.7e-96 Score=781.03 Aligned_cols=435 Identities=20% Similarity=0.301 Sum_probs=352.5
Q ss_pred CcccceeeccccCCcccCC----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcC
Q 011197 7 EFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGL 79 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~ 79 (491)
+|.++++|.+|...|.+-. ...|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~-- 105 (493)
T 3a74_A 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYELFKI-- 105 (493)
T ss_dssp CCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHHHHH--
T ss_pred CCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHHHhc--
Confidence 6788999999988754210 01288999999999999999999999999996 5999998653 24566777
Q ss_pred CCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHHH
Q 011197 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNALA 155 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i~ 155 (491)
|+.||+|.|+|+|.+++++ ++||+|++++||++|..++| .+.++ .+...++||||+| ++.+++++++||+|+
T Consensus 106 l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~plP--~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~ 181 (493)
T 3a74_A 106 SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALRPLP--EKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLII 181 (493)
T ss_dssp CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC--CC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccCCCC--ccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999999999875 89999999999999974444 55444 4555599999996 899999999999999
Q ss_pred HHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhH
Q 011197 156 YATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLN 235 (491)
Q Consensus 156 ~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~ 235 (491)
+++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||+||||||
T Consensus 182 ~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~-~~---------------------------~~~~~~~yLr~SpqLy 233 (493)
T 3a74_A 182 QSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT-HH---------------------------NALDMTLYMRIAIELH 233 (493)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EE---------------------------TTTTEEEEECSCSHHH
T ss_pred HHHHHHHHhCCeEEEECCeEEecCCCCcccceEe-cc---------------------------cCCCceeEEecCHHHH
Confidence 9999999999999999999998877777899965 22 5679999999999999
Q ss_pred HH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--
Q 011197 236 AE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFF-- 312 (491)
Q Consensus 236 lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~-- 312 (491)
|| ++++|++||||||||||||+++ .||+|||||||||++|+|++|+|+++|+||++ +++.+.+++. +.+.
T Consensus 234 lk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~----l~~~v~~~~~--i~~~~~ 306 (493)
T 3a74_A 234 LKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAH----IATEVLGTTK--IQYGEH 306 (493)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHSCSE--EEETTE
T ss_pred HHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHH----HHHHHhCCce--EeeCCE
Confidence 96 6899999999999999999995 59999999999999999999999999999999 9999887652 3322
Q ss_pred -----chhhcchhhhhhhhhhcCCC-ccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCC
Q 011197 313 -----NTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 386 (491)
Q Consensus 313 -----~~~~~~~~~~~l~~~~~~~~-~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~ 386 (491)
.+|.+.++.++++.+.+.++ ..++.+++.+++++.|.+++....+|..+...++.++.+. +. +|+||+|||.
T Consensus 307 ~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~-~~-~p~fv~dyP~ 384 (493)
T 3a74_A 307 LVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDK-LI-QPTFIYGHPV 384 (493)
T ss_dssp EEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGG-CC-SCEEEECCBG
T ss_pred eeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcc-cC-CcEEEECCCc
Confidence 23333344444444333333 3334444444444444433222234556666677665554 44 7999999999
Q ss_pred CCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-----CCCccc---HHHHHHHHhcCCCCccc
Q 011197 387 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDS---YWWYLDLRHYGSVPHAG 458 (491)
Q Consensus 387 ~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-----g~~~~~---~~~yl~~~~~G~pp~~G 458 (491)
+++||||+.++|+.++++||||++|+ ||+|||+|+||++.|++++++. ..+++. ++|||+|++||+|||||
T Consensus 385 ~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 463 (493)
T 3a74_A 385 EISPLAKKNPDDPRFTDRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGG 463 (493)
T ss_dssp GGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEE
T ss_pred ccCCccCcCCCCCCeEEEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCcee
Confidence 99999988777778999999999998 9999999999999999998753 123333 29999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 459 FGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 459 ~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||||||||+|++||.+||||||+||+.+.
T Consensus 464 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 464 LGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999874
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=1.4e-94 Score=779.08 Aligned_cols=412 Identities=22% Similarity=0.355 Sum_probs=333.6
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
++++|++|... +.|++|+|+|||+++|++|+++|++|||++| .||||++++...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREG--LVQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 67899999865 6899999999999999999999999999996 499999876434666667 9999999999
Q ss_pred EEEEecCC-----CceeEEEEEeeEEEEccCCC-CCCCCc------cccChhhhc-cCccccCCChHHHHHHHHHHHHHH
Q 011197 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (491)
Q Consensus 90 G~v~~~~~-----~~~~~el~~~~i~ils~~~~-~~P~~~------~~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~ 156 (491)
|+|.+++. ++|++||+|++++|||+|.+ ++|+.+ +....+.+| ++||||+|++.++++|++||++++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35689999999999999973 255544 323344455 999999999999999999999999
Q ss_pred HHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc-ccccchhhH
Q 011197 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLN 235 (491)
Q Consensus 157 ~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~L~~Spql~ 235 (491)
++|+||.++||+||+||+|+++++||+++ |.+. ++ .+.... ||+||||||
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~-~~---------------------------~~~~~~y~L~qSPQl~ 203 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVP-YR---------------------------HEPGLFYALPQSPQLF 203 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEE-CT---------------------------TSTTEEEECCSCSHHH
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-cccc-cc---------------------------ccCCceeECccCHHHH
Confidence 99999999999999999999999998765 7552 22 112223 599999999
Q ss_pred HH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Q 011197 236 AE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNT 314 (491)
Q Consensus 236 lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~ 314 (491)
|| ||++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||++ +++.+.+..
T Consensus 204 kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~----i~~~v~~~~--------- 269 (580)
T 1l0w_A 204 KQMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAH----VFREALGVE--------- 269 (580)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHTCCC---------
T ss_pred HHHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCc---------
Confidence 97 78999999999999999999976555 7999999999999999999999999999 988875421
Q ss_pred hhcchhhhhhhhhhcCCCccccHHHHHHHH--------------------------------------------------
Q 011197 315 WIEKGIIDRLSTVAERDFVQLSYTDAIELL-------------------------------------------------- 344 (491)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l-------------------------------------------------- 344 (491)
+..||+|+||.||++.+
T Consensus 270 -------------~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~ 336 (580)
T 1l0w_A 270 -------------LPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAE 336 (580)
T ss_dssp -------------CCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHH
T ss_pred -------------cCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHH
Confidence 12356666666665543
Q ss_pred -----HHhccccccccccccc-cchHHhhh----------------------------------------------hccc
Q 011197 345 -----IKAKKKFEFLVKWGCD-LQSEHERY----------------------------------------------LTEE 372 (491)
Q Consensus 345 -----~~~~~~~~~~~~~g~~-l~~~~e~~----------------------------------------------l~~~ 372 (491)
++.|.+--..+.|+.+ +.+.++++ |++.
T Consensus 337 l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~ 416 (580)
T 1l0w_A 337 LEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE 416 (580)
T ss_dssp HHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc
Confidence 1111100000112222 22212111 2232
Q ss_pred cccCccEEEEeCCCC------------CcccccccCC-------CC-Cc-eEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 373 AFGGCPVIVSDYPKE------------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 373 ~~~~~p~~i~~~P~~------------~~pf~~~~~~-------~~-~~-~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
. .+|+||+|||.. ++||||+.++ ++ .+ +++||||+||+ ||+|||+|+||++.|+++
T Consensus 417 -~-~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~r 493 (580)
T 1l0w_A 417 -G-FRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARV 493 (580)
T ss_dssp -S-CCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHH
T ss_pred -c-cCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHH
Confidence 2 379999999996 8999998765 34 25 89999999998 999999999999999999
Q ss_pred HHHcCCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 432 LDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 432 ~~~~g~~~~~----~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
|+..|+++++ ++|||+|++||+|||||||||||||+|++||.+||||||+||++++.+.
T Consensus 494 f~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 494 FRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp HHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred HHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 9999998776 7899999999999999999999999999999999999999999998764
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=7.2e-94 Score=775.79 Aligned_cols=434 Identities=21% Similarity=0.332 Sum_probs=340.9
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V 88 (491)
++++|++|... +.|++|+|+|||+++|++|+++|++|||++| .||||++++. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREG--IVQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 56889999764 6899999999999999999999999999997 4999998653 23556667 999999999
Q ss_pred EEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCcc-ccChhhhccCccccCCChHHHHHHHHHHHHHHHHHH
Q 011197 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (491)
Q Consensus 89 ~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~-~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (491)
+|+|.+++. ++|++||+|++++|||+|. ++|++.. ..+.+...++||||+|++.++++|++||++++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 3578999999999999997 3454433 344444449999999999999999999999999999
Q ss_pred HHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HH
Q 011197 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TY 239 (491)
Q Consensus 161 ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~ 239 (491)
||.++||+||+||+|+++++||+++ |.|. ++. ..++|| ||+|||||||| ||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~-~~~----------------------~~~~~y----~L~qSPQl~kq~Lm 202 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVP-SRV----------------------HKGKFY----ALPQSPQLFKQLLM 202 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEE-CSS----------------------STTCEE----ECCSCSHHHHHHHH
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceec-ccc----------------------cCCceE----eCccCHHHHHHHHH
Confidence 9999999999999999999998766 7553 221 001232 59999999997 78
Q ss_pred hccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccccch--
Q 011197 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE---DMDFFNT-- 314 (491)
Q Consensus 240 ~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~---~l~~~~~-- 314 (491)
++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||++ +++.+.+.+.. .+.+...
T Consensus 203 v~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~----i~~~v~~~~~~~f~r~ty~ea~~ 277 (585)
T 1c0a_A 203 MSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRH----LWLEVKGVDLGDFPVMTFAEAER 277 (585)
T ss_dssp HTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHSCCCCSCCEEEHHHHHH
T ss_pred hcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCCccccceeeHHHHHH
Confidence 999999999999999999976555 6999999999999999999999999999 88887654321 0111000
Q ss_pred ---------------------hhcchh---hhhhhh----h--h----cCCCccccHHHHHHHHHHhccc-ccccccccc
Q 011197 315 ---------------------WIEKGI---IDRLST----V--A----ERDFVQLSYTDAIELLIKAKKK-FEFLVKWGC 359 (491)
Q Consensus 315 ---------------------~~~~~~---~~~l~~----~--~----~~~~~~it~~ea~~~l~~~~~~-~~~~~~~g~ 359 (491)
+...++ .+.+.+ + + +.+|++.+++++.+++++.|.+ +. .+.|+.
T Consensus 278 ~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~-~~~~~~ 356 (585)
T 1c0a_A 278 RYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLA-YIKVNE 356 (585)
T ss_dssp HHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCC-EEEESC
T ss_pred HhcCCCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCce-eEEecc
Confidence 000000 000000 0 0 1236777888888888876532 10 011221
Q ss_pred ------ccchHHhhh-----------------------------------------------hccccccCccEEEEeCCC
Q 011197 360 ------DLQSEHERY-----------------------------------------------LTEEAFGGCPVIVSDYPK 386 (491)
Q Consensus 360 ------~l~~~~e~~-----------------------------------------------l~~~~~~~~p~~i~~~P~ 386 (491)
++.+.++++ +++... .+|+||+|||.
T Consensus 357 ~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~-~~p~fV~dfP~ 435 (585)
T 1c0a_A 357 RAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESK-WAPLWVIDFPM 435 (585)
T ss_dssp GGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSC-CCEEEEECCBS
T ss_pred cccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccc-cccEEEEeCCc
Confidence 121111111 222212 27999999999
Q ss_pred C-----------CcccccccCC-------CC-Cc-eEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCccc----H
Q 011197 387 E-----------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----Y 442 (491)
Q Consensus 387 ~-----------~~pf~~~~~~-------~~-~~-~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~----~ 442 (491)
. ++||||+.++ ++ .+ +++||||+||+ ||+|||+|+||++.|+++|+..|+++++ |
T Consensus 436 ~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~ 514 (585)
T 1c0a_A 436 FEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKF 514 (585)
T ss_dssp EEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhH
Confidence 6 8999998765 34 35 89999999998 9999999999999999999999998876 8
Q ss_pred HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 443 ~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+|||+|++||+|||||||||||||+|+|||.+||||||+||++++.+.
T Consensus 515 ~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 515 GFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCccc
Confidence 999999999999999999999999999999999999999999998764
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-83 Score=692.24 Aligned_cols=438 Identities=23% Similarity=0.288 Sum_probs=325.6
Q ss_pred CCCCCCCccc-ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhh
Q 011197 1 MGSKVGEFRK-KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (491)
Q Consensus 1 ~~~~~~~~~~-~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~ 76 (491)
|-|.++.|.. +++|.+|... +.|++|+|+|||+++|++ +|++|||++| .||||++++.. .++.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDG--LVQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSC--EEEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCc--CEEEEEeCCcCcHHHHHHHh
Confidence 4456666665 6999999875 689999999999999975 5999999996 49999987642 355677
Q ss_pred hcCCCCCcEEEEEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccccC--hhhhc-cCccccCCChHHHH
Q 011197 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (491)
Q Consensus 77 ~~~L~~gd~V~V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~~~--~~~~r-~~~~l~~R~~~~~~ 146 (491)
. |+.||+|.|+|+|++++. .+|++||+|++++|||+|. ++|++.+.+. .+.+| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 7 999999999999998643 2468999999999999998 7888765432 34455 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
+|++||++++++|+||. ++||+||+||+|++++++|+.+ |.+.+ +.++..
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~----------------------------~~~g~~ 197 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPS----------------------------REPGKF 197 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEEC----------------------------SSTTCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceecc----------------------------ccCCcc
Confidence 99999999999999996 7999999999999988887764 75532 123566
Q ss_pred cccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011197 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL-- 302 (491)
Q Consensus 226 ~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~-- 302 (491)
+||+||||+||| ||++|++||||||||||||+++ .+|+|||||||||++|+|++|+|+++|+|+++ +++.+.
T Consensus 198 ~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~----~~~~~~~~ 272 (617)
T 4ah6_A 198 YSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQY----SWPNDKDP 272 (617)
T ss_dssp EECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HSCSSSCC
T ss_pred cccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHH----HHHHhcCc
Confidence 799999999997 6899999999999999999996 56699999999999999999999999999999 765321
Q ss_pred -----------------hcCcccccccchhhc-------c--hhh-hhhhh---------hhcC--CCccccHHHHHHHH
Q 011197 303 -----------------DNCKEDMDFFNTWIE-------K--GII-DRLST---------VAER--DFVQLSYTDAIELL 344 (491)
Q Consensus 303 -----------------~~~~~~l~~~~~~~~-------~--~~~-~~l~~---------~~~~--~~~~it~~ea~~~l 344 (491)
++.++|+.+--...+ . .++ ..+.+ +.+. .+.|-..++..+..
T Consensus 273 ~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~a 352 (617)
T 4ah6_A 273 VVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFA 352 (617)
T ss_dssp CCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHH
T ss_pred cCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHH
Confidence 112223322100000 0 000 00000 0000 01111122222222
Q ss_pred HH------------------------------------hcccccccc--cccc---------ccchH-Hhhh------hc
Q 011197 345 IK------------------------------------AKKKFEFLV--KWGC---------DLQSE-HERY------LT 370 (491)
Q Consensus 345 ~~------------------------------------~~~~~~~~~--~~g~---------~l~~~-~e~~------l~ 370 (491)
+. .+.+-.+.+ ..|. .+... .+.. |.
T Consensus 353 k~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~ 432 (617)
T 4ah6_A 353 ADHFNQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLR 432 (617)
T ss_dssp HHSSCCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHhcCCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 22 111100000 0000 00000 1111 12
Q ss_pred cccccCccEEEEeCCCC-------------CcccccccCCC-------C--CceEEEEEEeCCeeEeechhhhcccHHHH
Q 011197 371 EEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQREERLEYL 428 (491)
Q Consensus 371 ~~~~~~~p~~i~~~P~~-------------~~pf~~~~~~~-------~--~~~~~fdl~~~G~gEi~~G~~r~~~~~~~ 428 (491)
++- ...++||+|||.. ++||+|+..+| + ..+.+|||++||+ ||+|||+|+|+++.|
T Consensus 433 ~~~-~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q 510 (617)
T 4ah6_A 433 DPT-LFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQ 510 (617)
T ss_dssp CTT-SCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHH
T ss_pred CCC-CeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHH
Confidence 111 1269999999983 78999987543 2 2578999999997 999999999999999
Q ss_pred HHHHH-HcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 429 EGRLD-ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 429 ~~~~~-~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+++++ ..|.+++.++|||+|++||+|||||+|+|+|||+|+++|.+||||||+||++...
T Consensus 511 ~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 511 RYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred HHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 99998 7888888899999999999999999999999999999999999999999998654
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=1e-74 Score=589.39 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=238.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
+.|++ .+++|++||+|++++|+||.++||+||+||+|++++++ +.+++|.+.+..+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~---------------------- 83 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGP---------------------- 83 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCS----------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCc----------------------
Confidence 44555 88999999999999999999999999999999998876 5679997632211
Q ss_pred ccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (491)
..-.+.++||+|||||||| ++++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||++
T Consensus 84 --~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~--- 157 (345)
T 3a5y_A 84 --GHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ--- 157 (345)
T ss_dssp --TTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHH---
T ss_pred --ccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHH---
Confidence 0001367899999999997 899999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccc-cccchHHhhhhcc---
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLTE--- 371 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g-~~l~~~~e~~l~~--- 371 (491)
+++. .+|.+.++.+++.+++|.+.+.++++++.+++++.|... +.++ .++...+++++.+
T Consensus 158 -v~~~------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~e~~l~~~ve 221 (345)
T 3a5y_A 158 -VLDC------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSN---VADTEEDRDTLLQLLFTFGVE 221 (345)
T ss_dssp -HHCC------------CCCEEEEHHHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTG
T ss_pred -HHcC------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcc---cCCCcCCHhHHHHHHHHHHHH
Confidence 7751 134455666777777777666678888877777766430 2333 3566666665542
Q ss_pred ccc-cCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-------CCCcccH-
Q 011197 372 EAF-GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY- 442 (491)
Q Consensus 372 ~~~-~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-------g~~~~~~- 442 (491)
+.+ ..+|+||+|||..++||++..++++.++++||||++|+ ||+|||+|++++++|++++++. |+++..+
T Consensus 222 ~~lg~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d 300 (345)
T 3a5y_A 222 PNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPID 300 (345)
T ss_dssp GGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHcCCCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 223 24799999999999999876555666889999999998 9999999999999999999875 8888888
Q ss_pred HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 443 ~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+|||+|++||+|||||||||||||+|++||.+||||||+|||+.
T Consensus 301 ~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 301 QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 79999999999999999999999999999999999999999974
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=3e-67 Score=525.41 Aligned_cols=279 Identities=27% Similarity=0.458 Sum_probs=244.5
Q ss_pred cCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeecc--------CCCCCCCceeeeecCCCcccccCCCC
Q 011197 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (491)
Q Consensus 133 ~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~--------~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (491)
+||++++|++ +++++++|+++++++|+||.++||+||+||+|+++ .+|+ +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4799999999 99999999999999999999999999999999999 7887 888865
Q ss_pred CCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCC--CCCCcccccccceeeEeccCCHHH
Q 011197 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 281 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~ 281 (491)
+|+++++||++|||+|+| ++++|++|||+||||||+|+ +++.||+|||||||+|++|.|++|
T Consensus 64 ---------------~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 64 ---------------EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---------------EcCCCCEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 466888999999999996 67788999999999999999 877899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccc
Q 011197 282 DMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 361 (491)
Q Consensus 282 lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l 361 (491)
+|+++|+|+++ +++.+.+....+++ .++. |+|++|.||++ + ||.
T Consensus 129 l~~~~e~l~~~----l~~~~~~~~~~~i~----------------~~~~-~~r~~y~ea~~---~----------~g~-- 172 (294)
T 1nnh_A 129 IMRLIERLVYG----LFRKAEEWTGREFP----------------KTKR-FEVFEYSEVLE---E----------FGS-- 172 (294)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHSSCCC----------------CCSS-CEEEEHHHHHH---H----------TSS--
T ss_pred HHHHHHHHHHH----HHHHHHhhhccccc----------------cCCC-ceEeEHHHHHH---H----------hCC--
Confidence 99999999999 87766431111111 1233 89999999985 2 222
Q ss_pred chHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeC-CeeEeechhhhcccHHHHHHHHHHcCCCcc
Q 011197 362 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRD 440 (491)
Q Consensus 362 ~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~-G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~ 440 (491)
.+++ .+. .. .|+||+||| +|||++. |+.++++||+|++ |+|||+|||+|+++++.|.++++..|++++
T Consensus 173 --~~er--~~~-~~-~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~ 241 (294)
T 1nnh_A 173 --DEKA--SQE-ME-EPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNED 241 (294)
T ss_dssp --HHHH--HHH-CS-SCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGG
T ss_pred --hHhh--hhh-cC-CCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCcc
Confidence 2233 222 23 799999999 9999876 6678999999999 999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 441 SYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 441 ~~~~yl~~~~~G~p-p~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
.|+|||+|++||+| ||||||||+|||+|+++|.+|||||++||+.++++.
T Consensus 242 ~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 242 SFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp GGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred CHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCccc
Confidence 99999999999999 999999999999999999999999999999999874
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.90 E-value=1.8e-24 Score=215.93 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=123.8
Q ss_pred cCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHH-----HHHHHHHHHHHHhhCCcEE
Q 011197 95 SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIW 169 (491)
Q Consensus 95 ~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~-----Rs~i~~~iR~ff~~~~F~E 169 (491)
.+++.|++||+|++++||++|..++|++.++. ...+++||||+|++.++++++. ++++.+.+|++|.+.||.|
T Consensus 20 ~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 20 GASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp ----CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 34456789999999999999987788876543 2366899999999999999999 9999999999999999999
Q ss_pred eecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc--cchhhHHHHH--h---cc
Q 011197 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLNAETY--A---TA 242 (491)
Q Consensus 170 V~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~--~Spql~lql~--~---~g 242 (491)
|.||+|++..+.. .++ ++..++ ......+++...+|+ +||+++..+. . .+
T Consensus 98 V~Tp~l~~~~~~~--~~~-~~~~~p--------------------~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~ 154 (290)
T 3qtc_A 98 IKSPILIPLEYIE--RMG-IDNDTE--------------------LSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD 154 (290)
T ss_dssp ECCCSEEETHHHH--HTT-CCTTSS--------------------GGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred EECCceeeHHHHH--hcC-CCcCCc--------------------hhhhheeeCCCeeEcccChHHHHHHHHHhhccCCC
Confidence 9999999875321 000 110000 000013456778999 9999997542 2 45
Q ss_pred CCceEEEccccccCCCCCCcccccccceeeEeccCC--HHHHHHHHHHHH
Q 011197 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYL 290 (491)
Q Consensus 243 ~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~lm~~~e~li 290 (491)
..|+||||+|||+|+. +.+|++||||+|+++++.+ +.++..++++++
T Consensus 155 p~rlfeiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll 203 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFL 203 (290)
T ss_dssp SEEEEEEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHH
Confidence 6899999999999976 6789999999999999864 555555444433
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.86 E-value=7e-21 Score=186.00 Aligned_cols=277 Identities=12% Similarity=0.031 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHh-----hCCcEEeecceeeccCCCCC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-----~~~F~EV~TPiL~~~~~eg~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-++-....+..+++||. +.|+++|..|+++....+=+ -++-.++..
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~----------------------- 60 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVK----------------------- 60 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCS-----------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecc-----------------------
Confidence 35667789999999999 89999999999998544311 111111000
Q ss_pred CccccccCcccccccchhhHHHH-Hhc-cC---CceEEEccccccCCC-CCCcccccccceeeEeccCCHHHHHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNAET-YAT-AL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAY 289 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~lql-~~~-g~---~rvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~l 289 (491)
+.=+..+-..+|--.|||+ +.. +| +.+|+-.++-|.|+. .+.+|.-+|+|.|||......+..|+..++.
T Consensus 61 ----~~~~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~t 136 (330)
T 12as_A 61 ----ALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKST 136 (330)
T ss_dssp ----SSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHH
T ss_pred ----cCCCceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHH
Confidence 0114566788999999984 433 57 899999999998654 5799999999999999998888888888998
Q ss_pred HHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhh
Q 011197 290 LQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369 (491)
Q Consensus 290 i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l 369 (491)
++. +...+..... +.... + .+...+..++..+|.+|+.+.+ +..-..+-|..+
T Consensus 137 V~~----Iy~~ik~tE~----~~~~~----y--~l~p~Lp~~i~fitsqeL~~~Y-------------P~lt~keRE~~i 189 (330)
T 12as_A 137 VEA----IWAGIKATEA----AVSEE----F--GLAPFLPDQIHFVHSQELLSRY-------------PDLDAKGRERAI 189 (330)
T ss_dssp HHH----HHHHHHHHHH----HHHHH----S--CCCCCSCSSCEEEEHHHHHHHS-------------SSSCHHHHHHHH
T ss_pred HHH----HHHHHHHHHH----HHHHH----h--ccCcCCCCceEEEeHHHHHHHc-------------CCCChHHHHHHH
Confidence 887 6655533210 00000 0 0112245567778888876542 212223344455
Q ss_pred ccccccCccEEEEeCCCCCcc--cccccCCC-CCce---------EEEEEEe-----CCeeEeechhhhcccHHHHHHHH
Q 011197 370 TEEAFGGCPVIVSDYPKEIKA--FYMRQNDD-GRTV---------AAMDMLV-----PRIGELIGGSQREERLEYLEGRL 432 (491)
Q Consensus 370 ~~~~~~~~p~~i~~~P~~~~p--f~~~~~~~-~~~~---------~~fdl~~-----~G~gEi~~G~~r~~~~~~~~~~~ 432 (491)
+..+ .+|||++.|..++- ++..+.+| +.+. .+.||++ .+..||.+++.| -+++.+.+++
T Consensus 190 ~ke~---gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL 265 (330)
T 12as_A 190 AKDL---GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQL 265 (330)
T ss_dssp HHHH---SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHH
T ss_pred HHhh---CCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHH
Confidence 5443 59999999876431 22222222 2344 7999999 466799999999 8999999999
Q ss_pred HHcCCCcccHHHHHHHHhcCC-CCccceeccHHHHHHHHcCCCCcccccc
Q 011197 433 DELKLNRDSYWWYLDLRHYGS-VPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 433 ~~~g~~~~~~~~yl~~~~~G~-pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+..|..+....+|.+++..|. |++.|.|||..||+|+|++..+|-+|++
T Consensus 266 ~~~g~~er~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 266 ALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp HHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred HHcCCChhhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 999988777788999998885 9999999999999999999999999986
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.73 E-value=6.9e-18 Score=167.68 Aligned_cols=189 Identities=18% Similarity=0.251 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CCC---CceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDC-E--GAG---EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~~---~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
..++.+.+|++|...||.||.||.|++... + +.. +.+.+ .+..+.
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~-----------------------------~npl~e 123 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQ-----------------------------VFWLDG 123 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTT-----------------------------SCEEET
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEe-----------------------------eccccc
Confidence 367899999999999999999999998431 0 000 01100 011123
Q ss_pred ccccc--cchhhHH--HHHhccCC---ceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHHHHHHHHHHH
Q 011197 225 PAFLT--VSGQLNA--ETYATALS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQLY 293 (491)
Q Consensus 225 ~~~L~--~Spql~l--ql~~~g~~---rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li~~~ 293 (491)
..+|+ .+|.+.. +.....-+ |+|+||+|||+|.. +..|.+||+|+|++....+ +.+++.+++++++.
T Consensus 124 ~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~- 201 (288)
T 3dsq_A 124 KKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEA- 201 (288)
T ss_dssp TEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHH-
T ss_pred chhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHH-
Confidence 45676 3465542 32323233 89999999999987 5789999999999997652 33333333333222
Q ss_pred HHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcccc
Q 011197 294 SCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 373 (491)
Q Consensus 294 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~ 373 (491)
.|++
T Consensus 202 -----------------------------------------------------LGl~----------------------- 205 (288)
T 3dsq_A 202 -----------------------------------------------------AGIR----------------------- 205 (288)
T ss_dssp -----------------------------------------------------HTCC-----------------------
T ss_pred -----------------------------------------------------cCCC-----------------------
Confidence 1110
Q ss_pred ccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcC-
Q 011197 374 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG- 452 (491)
Q Consensus 374 ~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G- 452 (491)
...+ +. | . ....+.++|++++|. ||++|+.+.+..+. ++|
T Consensus 206 ---~~~~-~~-~---------s--~e~~~~~~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi 246 (288)
T 3dsq_A 206 ---EFEL-VT-E---------S--SVVYGDTVDVMKGDL-ELASGAMGPHFLDE----------------------KWEI 246 (288)
T ss_dssp ---CCEE-EE-C---------C--CCSSCCCEEEEETTE-EEEEEEEESCTTTT----------------------TTTC
T ss_pred ---CcEE-ec-C---------C--cceEEEEEEEEeCCE-EEEEEEecHHHHHH----------------------hcCC
Confidence 0000 00 0 0 001245688999996 99999966654421 568
Q ss_pred CCCccceeccHHHHHHHHcCCCCcccccccCCC
Q 011197 453 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485 (491)
Q Consensus 453 ~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~ 485 (491)
.||++|||||+|||+|+++|.+|||++..-..+
T Consensus 247 ~~~~~gfglglerl~m~~~g~~~iR~~~~~~~~ 279 (288)
T 3dsq_A 247 FDPWVGLGFGLERLLMIREGTQHVQSMARSLSY 279 (288)
T ss_dssp CSCEEEEEEEHHHHHHHHHTCSCGGGGSSCSSE
T ss_pred CCCeEEEEECHHHHHHHHcCCchhhcCCCCccc
Confidence 489999999999999999999999998765443
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.66 E-value=2.3e-16 Score=160.19 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc--ccccCcc--c
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS--QDFFEKP--A 226 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~--~ 226 (491)
.+++++.+|++|..+||.||.+|.+.+..- ..+..+.+.+|+|++..+.....++-+.+.+ ...-... +
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~-------nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vL 175 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFF-------NFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLL 175 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-------HTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchh-------HHHhhCCCCCCccccccccEEEcCcccccccccccccccccee
Confidence 356889999999999999999999976311 0011222233444321111100000000000 0000112 2
Q ss_pred ccccchhhHHHHHhccC--CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 227 FLTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 227 ~L~~Spql~lql~~~g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
..++||.+. +++..+- -|+|+||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.
T Consensus 176 Rt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~ 243 (350)
T 1b7y_A 176 RTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQA 243 (350)
T ss_dssp CSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred eccchHHHH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 344555553 6666543 379999999999876 578999999999999987 789999988887777
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.55 E-value=1.3e-14 Score=144.59 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccccccc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~ 230 (491)
.+++.+.+|++|..+||.||++|.+.+... .| ...+.+.+|++++..+. -|.+....|++
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~-----nf--~~l~~~~~~par~~~d~-------------~~l~e~~vLRt 114 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYY-----NF--EALNLPKSHPARDMQDS-------------FYITDEILMRT 114 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-----HT--GGGTCCTTCGGGCTTTS-------------CBSSSSEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehh-----hH--HhhCCCCCccccccCCc-------------EEEcCcceeec
Confidence 467889999999999999999999876311 00 01111112222210000 01123346766
Q ss_pred chhhHH-HHHhcc----CCceEEEccccccCCCCCCcccccccceeeEecc--CCHHHHHHHHHHHHHH
Q 011197 231 SGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQL 292 (491)
Q Consensus 231 Spql~l-ql~~~g----~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~ 292 (491)
|.--.+ ++++.+ -.|+||||+|||+|+. +.+|+|||+|||+++++ .|+.+++..++.+++.
T Consensus 115 sl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~ 182 (294)
T 2rhq_A 115 HTSPVQARTMEKRNGQGPVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKK 182 (294)
T ss_dssp SSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCCCccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 666665 777776 5689999999999875 46799999999999998 5799999998888777
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.50 E-value=3.4e-14 Score=142.62 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Cccccccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKPAFLTV 230 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~L~~ 230 (491)
+.+...+|++|...||.|+.+|.+.+..- ..+..+.+.+|++++..+ .|| +....|++
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~-------nFd~Ln~p~dhpaR~~~d--------------t~~i~e~~vLRT 168 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYH-------NFDALNIPGHHPARADHD--------------TFWFDTTRLLRT 168 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCC-------CCCTTTCCSSSHHHHHTT--------------CCBSSSSCEECS
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHH-------HHHhhCCCCCChhhcccc--------------cEEeCCCceecc
Confidence 45788999999999999999998866322 124455455555432111 122 22334444
Q ss_pred --chhhHHHHHhccCC--ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 231 --SGQLNAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 231 --Spql~lql~~~g~~--rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
||.+ ++.+..+-. |+|++|+|||++ . +.+|+|+|+|+|+..... |+.++...++.+++.
T Consensus 169 htsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~ 233 (327)
T 3pco_A 169 QTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRN 233 (327)
T ss_dssp CTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred cCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4544 366665543 899999999998 4 689999999999887744 688888888888777
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.36 E-value=3.9e-12 Score=134.04 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeec-ceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCC----------------
Q 011197 148 ARVRNALAYATHKFFQENGFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKT---------------- 210 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~T-PiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~---------------- 210 (491)
+.-.+++...+|++|...||.||.| |.+..+ .+..+.++.+++|||++..|.....
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~-------~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v 296 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESS-------FWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRV 296 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEH-------HHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccH-------HHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhh
Confidence 4445678899999999999999875 777663 1223556777888888643322111
Q ss_pred ---CCCCcCccccccC--------cccccccchhhHH-HHHhc-----cC--CceEEEccccccCCCCCCccccccccee
Q 011197 211 ---KDGLIDWSQDFFE--------KPAFLTVSGQLNA-ETYAT-----AL--SNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (491)
Q Consensus 211 ---~~~~~~~~~~~f~--------~~~~L~~Spql~l-ql~~~-----g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE 271 (491)
|+.+. .....|+ ...-|+++.--.+ +.+.. +. -|+|+||+|||+|.. +.+|+|+|+|+|
T Consensus 297 ~~~He~g~-~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~-DatHlpeFhQle 374 (508)
T 3l4g_A 297 KRTHSQGG-YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL-DATHLAEFHQIE 374 (508)
T ss_dssp HHHHHTCB-TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC-CSSSCSEEEEEE
T ss_pred hhhhhccc-cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC-CCCcCCeEEEEE
Confidence 11000 0011111 2345655554444 54432 22 379999999999987 689999999999
Q ss_pred eEeccC--CHHHHHHHHHHHHHH
Q 011197 272 PELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 272 ~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+..+.. ++.+++..++.+++.
T Consensus 375 gl~~~~~v~f~dLKg~Le~~l~~ 397 (508)
T 3l4g_A 375 GVVADHGLTLGHLMGVLREFFTK 397 (508)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 987743 577777766665544
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.96 E-value=3.3e-09 Score=110.07 Aligned_cols=103 Identities=13% Similarity=0.268 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhC--------CcEEeec-ceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 152 NALAYATHKFFQEN--------GFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 152 s~i~~~iR~ff~~~--------~F~EV~T-PiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
+.+...||++|... ||.|+++ |.+.+.. ..| +.++.+++|++++. ...||
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~-----~NF--d~L~~p~dHpaR~~--------------~Dtfy 109 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTW-----QNF--DSLLIPADHPSRKK--------------GDNYY 109 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHH-----HHT--GGGTCCTTCGGGCG--------------GGSCB
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHH-----HHH--HHhCCCCCCCcccc--------------cceEE
Confidence 44666777777766 8999998 6666421 122 45666667766521 12343
Q ss_pred -CcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEecc
Q 011197 223 -EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (491)
Q Consensus 223 -~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (491)
+...-|+++.--++ ++|..+..|+|++|.|||.+.. +..|.|+|.|+|.-..|
T Consensus 110 i~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 110 LNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp SSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred ecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 55556776655555 6777777899999999999987 68999999999987776
No 26
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=6.2e-07 Score=94.97 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=37.6
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++..
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~ 268 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQ 268 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 799999999987541256999999999999875 577777766665555
No 27
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.45 E-value=4.4e-07 Score=97.08 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++...+.+|.+||+|++.-++.. |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
No 28
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.44 E-value=6.3e-07 Score=95.65 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++..-+.+|.+||+|++.-++.. |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
No 29
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.43 E-value=6.8e-07 Score=95.51 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++..-+.+|.+||+|++.-++.. |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
No 30
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.42 E-value=2.2e-06 Score=90.89 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=38.0
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
|+|+||+|||.|...+..|.+||+|+++.+.+. |+.+++..++.++..
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~ 256 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQ 256 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 799999999987541457999999999999874 577777777665555
No 31
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.41 E-value=8.2e-07 Score=95.23 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
No 32
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.11 E-value=4e-06 Score=86.72 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.-.+++..|.+.+|+.|.+.||.||.||+|..... .| ..+.|.+ ...
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~-d~~----------------------- 82 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT-SSE----------------------- 82 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEE-EET-----------------------
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeE-ecC-----------------------
Confidence 346788899999999999999999999999998641 01 0123321 100
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (491)
+..++|+-..+... ++++.. + -|+|+||+|||+|.. +.+ -..||+|.|+|. |.+..+...
T Consensus 83 ------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~~~~~~~ 154 (401)
T 1evl_A 83 ------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRD 154 (401)
T ss_dssp ------TEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred ------CceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCCHHHHHH
Confidence 34456665555444 444322 2 389999999999975 222 237999999995 667666555
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 155 e~~e~i~~ 162 (401)
T 1evl_A 155 EVNGCIRL 162 (401)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 33
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.11 E-value=5.9e-06 Score=87.00 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----C----CCCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----e----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+... + -..+.|.++...
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~---------------------- 120 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH---------------------- 120 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTT----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCC----------------------
Confidence 4557888999999999999999999999999998531 1 122444432110
Q ss_pred CccccccCcccccccch-hhHH---HHHhccC----CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSG-QLNA---ETYATAL----SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Sp-ql~l---ql~~~g~----~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (491)
++.++|+... +..- +..+... -|+|+|++|||+|-. .+ -..||+|.|+|.-..+..+.-
T Consensus 121 -------~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~--p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 121 -------KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR--PRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS--CBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC--CCCCcccccceEEeEEEEEECCHHHHH
Confidence 3445565421 3322 2222222 489999999999932 23 347999999999876766655
Q ss_pred HHHHHH
Q 011197 284 ACATAY 289 (491)
Q Consensus 284 ~~~e~l 289 (491)
..+..+
T Consensus 192 ~e~~~~ 197 (458)
T 2i4l_A 192 KSYNKM 197 (458)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 34
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.08 E-value=1.7e-05 Score=80.43 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC----------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+.+..+...+|+.|...||.||.||++..... ....+.|.+...+
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~---------------------- 91 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE---------------------- 91 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC----------------------
Confidence 45778889999999999999999999999988421 1122444432110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc----CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g----~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+-=.-... ++++.. --|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 92 -------g~~l~LRpd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 92 -------GQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 151 (344)
T ss_dssp -------CCEEEECCCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred -------CCEEecCCCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCC
Confidence 22222222111112 443332 24899999999999774 446789999999998765
No 35
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.06 E-value=4.1e-06 Score=87.00 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C--CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++..|.+.+|+.|.+.||.||.||+|..... . +. .+.|.++..+
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~---------------------- 71 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG---------------------- 71 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCC----------------------
Confidence 45778899999999999999999999999998532 1 11 1334332110
Q ss_pred CccccccCcccccccchhhHH-HHHhc-------cC-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~-------g~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.++|+--..... ++++. .+ -|+|+||+|||+|... .-+.-||+|.|+|.-..+
T Consensus 72 -------g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 72 -------DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp -------HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred -------CCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 23344443322222 33321 22 4899999999999763 345689999999998765
No 36
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.05 E-value=6.8e-06 Score=85.58 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
..-.+++..|.+.+++.+.+.||.||.||+|.....- |...-|. .+.
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~em 218 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFE------------------------------EDL 218 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTG------------------------------GGS
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcCh------------------------------hhh
Confidence 4567788999999999999999999999999986421 1111110 011
Q ss_pred c---CcccccccchhhHH-HHHhc------cC-CceEEEccccccCCCCCC--c----ccccccceeeEeccCCHHHHHH
Q 011197 222 F---EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 222 f---~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (491)
| +..+||+--.+... .+... .+ -|+|++|+|||+|.+... + -..||+|.|.+. |.+-++..+
T Consensus 219 y~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~ 297 (425)
T 2dq3_A 219 YKCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYD 297 (425)
T ss_dssp CBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHH
T ss_pred eEecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHH
Confidence 1 34456655444433 23221 12 389999999999975211 1 235999999976 555556666
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 298 ~~~e~i~~ 305 (425)
T 2dq3_A 298 ELEKLVKD 305 (425)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 37
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.02 E-value=2.9e-05 Score=82.06 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C------CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..-- + +.+.|.+++.+.
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~--------------------- 99 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG--------------------- 99 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC---------------------
Confidence 3467788999999999999999999999999986531 1 123444432210
Q ss_pred CccccccCcccccccchhh-----HHHHHhc--cC-CceEEEccccccCCC-CCCcccccccceeeEeccCCHHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQL-----NAETYAT--AL-SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql-----~lql~~~--g~-~rvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+-.+.+++|+--.+- |.+.+.+ .+ -|+||||+|||+|.. ++---.-||+|.|++..+.+..+....+
T Consensus 100 ----~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~ 175 (477)
T 1hc7_A 100 ----EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEV 175 (477)
T ss_dssp ----SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ----ccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHH
Confidence 001244556544442 2322222 22 389999999999943 2200235999999999999887776666
Q ss_pred HHHH
Q 011197 287 TAYL 290 (491)
Q Consensus 287 e~li 290 (491)
..++
T Consensus 176 ~~~l 179 (477)
T 1hc7_A 176 RRML 179 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 38
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.97 E-value=1.5e-05 Score=87.47 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| .-+.|.++...
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~---------------------- 324 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD---------------------- 324 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEET----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecC----------------------
Confidence 4567889999999999999999999999999998531 01 11222221100
Q ss_pred CccccccC-cccccccchhhHH-HHHhccC-------CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHH
Q 011197 216 DWSQDFFE-KPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 216 ~~~~~~f~-~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (491)
+ +.++|+--..-.. ++.+... -|+|+||+|||+|.+ ..+| .-||||.|+|. |.+.+++
T Consensus 325 -------~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~-~~~~GL~R~ReF~Q~d~~~-f~~~~~~ 395 (645)
T 1nyr_A 325 -------ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FVRPDQI 395 (645)
T ss_dssp -------TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCC-ccccCcceeeeEEEccEEE-EcCHHHH
Confidence 2 4445554443333 4444331 389999999999987 3333 37999999998 6676666
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+...+++..
T Consensus 396 ~d~~~e~i~~ 405 (645)
T 1nyr_A 396 KEEFKRVVNM 405 (645)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555544
No 39
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.94 E-value=3.8e-05 Score=80.17 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C--C---CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e--g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
.-.+++.+|.+.+|+.|...||.||.||++..... . | ..+.|.++..+
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~------------------------- 72 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG------------------------- 72 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCC-------------------------
Confidence 45778899999999999999999999999998532 1 1 12445443211
Q ss_pred ccccCcccccccchhhHH-HHHhcc----C-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 219 QDFFEKPAFLTVSGQLNA-ETYATA----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-ql~~~g----~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--.-... ++.+.. + -|.|+||++||+|..... +.-||+|.++|.-..+
T Consensus 73 ----g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 73 ----GREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp ----SCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred ----CCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCC
Confidence 22222322112222 433322 1 389999999999976434 5689999999998765
No 40
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.92 E-value=3.5e-05 Score=83.36 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++..|.+.+|+.|.+.||.||.||++.....- | ..+.|.++...
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~---------------------- 100 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRN---------------------- 100 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTT----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCC----------------------
Confidence 44568889999999999999999999999999986310 1 11344332110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (491)
++.++|+--.+-.. +++... + -|+|+||+|||+|.. . +| .-||+|.|+|.-..+-.+..
T Consensus 101 -------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 101 -------DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHH
Confidence 34445544333322 332221 2 389999999999976 3 33 36999999999877666666
Q ss_pred HHHHHHHH
Q 011197 284 ACATAYLQ 291 (491)
Q Consensus 284 ~~~e~li~ 291 (491)
..++.++.
T Consensus 172 ~e~~~~~~ 179 (572)
T 2j3l_A 172 QSYRDYEK 179 (572)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 41
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.89 E-value=2.5e-05 Score=82.23 Aligned_cols=121 Identities=18% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff-~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.-.-.+++..|.+.+|+.+ .+.||.||.||+|..... .|.. +.|.++..+
T Consensus 60 lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~--------------------- 118 (460)
T 3uh0_A 60 LPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTD--------------------- 118 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC-----------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCC---------------------
Confidence 3456888999999999999 999999999999987532 0111 233321100
Q ss_pred cCccccccCcccccccchhhHH-HHHhccC-------CceEEEccccccCCCC---CCcccccccceeeEeccCCHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
--+.+++|+--.+... .+..... -|+|++|+|||+|... +-.-.-||+|.|.+. |.+-++..
T Consensus 119 ------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~ 191 (460)
T 3uh0_A 119 ------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVK 191 (460)
T ss_dssp ----------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHH
T ss_pred ------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHH
Confidence 0034455654444444 4443322 2799999999999762 211235999999996 67666666
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+++++..
T Consensus 192 ~e~~~~i~~ 200 (460)
T 3uh0_A 192 SEIFNSLKL 200 (460)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666655
No 42
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.85 E-value=4.8e-05 Score=78.59 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
.-.+++..+...+|+.|...||.||.||++..... ....+.|.+...+
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~-------------------------- 75 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ-------------------------- 75 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC--------------------------
Confidence 45678899999999999999999999999976532 1112344432111
Q ss_pred cccCcccccccchhhH--H-HHHhcc-----C-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 220 DFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 220 ~~f~~~~~L~~Spql~--l-ql~~~g-----~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-|+ |++= . ++++.. . -|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 76 ---g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 76 ---GNTLVLR--PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp ---SCEEEEC--SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred ---CCEEEEC--CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 2222222 2221 1 333332 2 3899999999999764 346689999999997664
No 43
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.82 E-value=5.2e-05 Score=78.68 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++.+|.+.+|+.|.+.||.||.||++..... . |. .+.|.++..+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 72 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG---------------------- 72 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC----------------------
Confidence 35678899999999999999999999999998542 1 11 1345442211
Q ss_pred CccccccCcccccccchhhHH-HHHh-ccC------CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TAL------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~-~g~------~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--.-... ++.+ ... -|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 73 -------g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 73 -------GRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred -------CCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 22222222111111 3332 222 489999999999976433 5589999999997765
No 44
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.81 E-value=4.7e-05 Score=80.26 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC-----CCCCCC-ceeeeecCCC--cccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-----CEGAGE-QFCVTTLIPS--SREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~-----~eg~~~-~F~vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.-.+.+..+...+|+.|...||.||.||++.... ++...+ .|.+....+. ..+.+ .
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~------------~---- 87 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKD------------K---- 87 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccc------------c----
Confidence 4567789999999999999999999999994321 233345 6766443100 00000 0
Q ss_pred cccccCcccccccchhhHH-HHHhc-----cC-CceEEEccccccCCCCCCcccccccceeeEeccCC--HH----HHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYAT-----AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMA 284 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~-----g~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~----~lm~ 284 (491)
+.+.=+..+.|+-=.-... ++++. .. -|.|+||+|||.|... .-+.-||+|+++|.-..+ .. +++.
T Consensus 88 ~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~ 166 (465)
T 3net_A 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465)
T ss_dssp ------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHH
Confidence 0000022222322111111 33222 12 3899999999999764 445689999999998653 22 4555
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
++-++++.
T Consensus 167 l~~~~l~~ 174 (465)
T 3net_A 167 IITEIFEA 174 (465)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 45
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.81 E-value=5.9e-05 Score=78.37 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++.+|.+.+|+.|...||.||.||++..... . |. .+.|.++..+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 73 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN---------------------- 73 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC----------------------
Confidence 35778899999999999999999999999998532 1 11 1456553221
Q ss_pred CccccccCcccccccchhhHH-HHHh-cc-----CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~-~g-----~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+-=.-... ++.+ .. --|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 74 -------g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 -------GDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp -------SCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCC
T ss_pred -------CCEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCC
Confidence 22222222111112 3333 22 2489999999999976433 5689999999998765
No 46
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.80 E-value=5.3e-05 Score=79.92 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++..|...+|+.|.+.||.||.||++..... . |. .+.|.+...+.
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~--------------------- 102 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN--------------------- 102 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC---------------------
Confidence 45778899999999999999999999999987542 0 11 13454321100
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--.-... ++++.. --|.|++|+|||+|.... -+.-||+|+++|.-..+
T Consensus 103 -------g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 103 -------GENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFA 164 (467)
T ss_dssp -------CCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred -------CCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEEeCC
Confidence 12233332222222 433321 248999999999998743 45689999999987554
No 47
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.79 E-value=8.1e-05 Score=78.23 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC--C-C----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE--G-A----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e--g-~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
.-.+++..+...+|+.|...||.||.||++.....- + + .+.|.+...+
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~------------------------- 95 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG------------------------- 95 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS-------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC-------------------------
Confidence 346788999999999999999999999999886431 1 1 1345442211
Q ss_pred ccccCcccccccchhhH--H-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 219 QDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~--l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-| -|++= . ++++.. --|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 96 ----g~~l~L--Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 96 ----GHRVAL--RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp ----SCEEEE--CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ----CCEEec--CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 222222 22221 1 433332 24799999999999874 345689999999997664
No 48
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.78 E-value=9.7e-05 Score=77.71 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.|.+.||.||.||++.+... .| ..+.|.++....
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~--------------------- 93 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK--------------------- 93 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS---------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc---------------------
Confidence 346778899999999999999999999999998441 11 124454432210
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC-CC-ccccccc-ceeeEeccCCHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN-TS-RHLAEFW-MIEPELAFADLKDDMA 284 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~-t~-rHl~EFt-mlE~e~~~~~~~~lm~ 284 (491)
.--+.+++|+--.+-.. ++.+.. + -|+||||+|||+|... .. .-.-||+ |.|.+..+.+..+...
T Consensus 94 ----~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~ 169 (459)
T 1nj8_A 94 ----TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEN 169 (459)
T ss_dssp ----SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHH
T ss_pred ----ccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHH
Confidence 00034455655554444 444322 2 3899999999999751 11 0225999 9999999998888777
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 170 e~~~~i~~ 177 (459)
T 1nj8_A 170 QVKEAISI 177 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 49
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.74 E-value=7.5e-05 Score=79.38 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CC--------CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg--------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+... .+ .-+.|.++..+.
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~--------------------- 125 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL--------------------- 125 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC---------------------
Confidence 34677888999999999999 999999999998542 11 124555432210
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc--cccccc-ceeeEeccCCHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDDMA 284 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~~~~~~~~lm~ 284 (491)
+--+.+++|+--.+... .+.+.- + -|+|+||+|||+|..++.= =.-||+ |.|.+..+.+.++..+
T Consensus 126 ----~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~ 201 (501)
T 1nj1_A 126 ----SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEE 201 (501)
T ss_dssp ----EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred ----cccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHH
Confidence 00023455665555444 443321 2 2799999999999752110 124999 9999999999888877
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.+++++..
T Consensus 202 e~~~~l~~ 209 (501)
T 1nj1_A 202 QVERAVEI 209 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 50
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.71 E-value=5.7e-05 Score=79.34 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....+++.++++.+++.+.++||.||.||.|..... ++.+ +.|.++..
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~------------------------ 260 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD------------------------ 260 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC------------------------
Confidence 557899999999999999999999999999998653 1111 33433110
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC-CC-----CcccccccceeeEeccCCHHH-
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS-NT-----SRHLAEFWMIEPELAFADLKD- 281 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~-~t-----~rHl~EFtmlE~e~~~~~~~~- 281 (491)
+.++||.-..+..+ .+...- + =|+|++++|||+|-. .+ ---.-||+|.|.+. |..-++
T Consensus 261 ------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~ 333 (484)
T 3lss_A 261 ------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQE 333 (484)
T ss_dssp ------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTT
T ss_pred ------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchH
Confidence 24456766666665 332221 1 269999999999962 11 01223999999975 555555
Q ss_pred -HHHHHHHHHHH
Q 011197 282 -DMACATAYLQL 292 (491)
Q Consensus 282 -lm~~~e~li~~ 292 (491)
..+..++++..
T Consensus 334 ~s~~e~e~~~~~ 345 (484)
T 3lss_A 334 ESWRHLEDMITT 345 (484)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 77777777665
No 51
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.69 E-value=5.3e-05 Score=79.51 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....+++..+++.+++.+.+.||.||.||.|..... + |. .+.|.++..
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~------------------------ 237 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG------------------------ 237 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC------------------------
Confidence 457888999999999999999999999999998653 1 11 134443210
Q ss_pred ccccccCcccccccchhhHH-HHHhcc-C--------CceEEEccccccCCCC------CCcccccccceeeEeccCCHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA-L--------SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLK 280 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g-~--------~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~ 280 (491)
+.+.||.-..+..+ -++..- + =|+|++++|||+|-.. +---.-||+|.|.+. |..-+
T Consensus 238 ------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe 310 (485)
T 3qne_A 238 ------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPE 310 (485)
T ss_dssp ------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGG
T ss_pred ------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHH
Confidence 23456665556555 232221 1 2599999999999631 111224999999987 67777
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
+..+..++++..
T Consensus 311 ~s~~e~e~ml~~ 322 (485)
T 3qne_A 311 KSWEEFDRMIGC 322 (485)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 52
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.67 E-value=8.5e-05 Score=81.34 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.-.+++..|.+.+|+.+.+.||.||.||+|.....- |. -+.|. +...
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~--------------------- 323 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE--------------------- 323 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEET---------------------
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecC---------------------
Confidence 345678899999999999999999999999999986420 11 12332 1110
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~l 282 (491)
++.++|+--..-.. ++.... + =|+|+||+|||+|.+ +.+ -.-||||.|++. |.+.+++
T Consensus 324 --------~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~ 393 (642)
T 1qf6_A 324 --------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQI 393 (642)
T ss_dssp --------TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred --------CceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHH
Confidence 23344544333333 443322 2 289999999999976 222 236999999998 6676665
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
....++++..
T Consensus 394 ~~e~~~~i~~ 403 (642)
T 1qf6_A 394 RDEVNGCIRL 403 (642)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 53
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.65 E-value=0.00011 Score=75.11 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-----C-CC-CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-----E-GA-GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-----e-g~-~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
-.+++..+...+|+.|...||.||.||++..... + .. .+.|.+...+
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~-------------------------- 89 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG-------------------------- 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC--------------------------
Confidence 4677889999999999999999999999987432 1 11 2333321110
Q ss_pred cccCccccccc--chhhHHHHHhc------cCCceEEEccccccCCC------CCCcccccccceeeEeccCC
Q 011197 220 DFFEKPAFLTV--SGQLNAETYAT------ALSNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 220 ~~f~~~~~L~~--Spql~lql~~~------g~~rvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-|+- .|++. ++++. .--|.|+||+|||+|.. . .-+.-||+|+++|.-..+
T Consensus 90 ---g~~l~LRpd~T~~~a-R~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~-~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 90 ---GDAVALRPEMTPSIA-RMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWA-SGKAAESTQVGIERIGEE 157 (373)
T ss_dssp ---SSCEEECSSSHHHHH-HHHHHHHHTTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred ---CCEEEECCcCHHHHH-HHHHhccccCCCCeEEEEEcceEccCCCccccccc-CCccceeEEeeeEEECCC
Confidence 22222221 11221 32222 23689999999999966 2 235689999999997654
No 54
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.65 E-value=0.0001 Score=76.49 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
.-.+++..|.+.+++.+.+.||.||.||+|.....- |..+-|. .+.|
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~emy 213 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYR------------------------------DQVW 213 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTG------------------------------GGSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCc------------------------------hhcE
Confidence 467888999999999999999999999999985421 1111110 0111
Q ss_pred ---CcccccccchhhHH-HHHhc------cC-CceEEEccccccCCC------CCCcccccccceeeEeccCC-HHHHHH
Q 011197 223 ---EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD-LKDDMA 284 (491)
Q Consensus 223 ---~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~-~~~lm~ 284 (491)
+..++|.-..+... .++.. .+ -|+|++|+|||+|-+ ++---.-||+|.|++..... .++..+
T Consensus 214 ~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~ 293 (421)
T 1ses_A 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293 (421)
T ss_dssp BBTTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHH
T ss_pred EEcCCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHH
Confidence 23455665555444 23221 12 389999999999952 12002259999999876544 477777
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 294 ~~~e~~~~ 301 (421)
T 1ses_A 294 AFQELLEN 301 (421)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 55
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.59 E-value=0.00011 Score=77.18 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
..-.+++..|.+.+++.+.+.||.||.||+|..... .|..+-|.- .+...
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~----------------emy~~----------- 242 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFED----------------VIYKV----------- 242 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHH----------------TCCBB-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChH----------------hhCee-----------
Confidence 456778899999999999999999999999998543 122122210 00000
Q ss_pred cCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC------cccccccceeeEeccCCHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 222 f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~------rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
-+.++||.-..+... .+.... + =|+|++|+|||+|..... .-.-||+|.|.+ .|.+-++..+..+
T Consensus 243 ~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~ 321 (455)
T 2dq0_A 243 EDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHE 321 (455)
T ss_dssp TTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHH
T ss_pred cCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHH
Confidence 023456666555554 333221 2 379999999999975111 022499999998 5676677777777
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 322 e~l~~ 326 (455)
T 2dq0_A 322 KIIRN 326 (455)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 56
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.57 E-value=0.00032 Score=73.61 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
+-.-.+++..|.+.+|+.|...||.||.||++.... ++...+.|.+...+
T Consensus 24 lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~------------------------ 79 (464)
T 4g84_A 24 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 79 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCC------------------------
Confidence 345678889999999999999999999999997642 11112333321110
Q ss_pred cccccCcccccccchhhH---HHHHhcc---CCceEEEccccccCCCCC-CcccccccceeeEeccC
Q 011197 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~---lql~~~g---~~rvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~ 277 (491)
++.+.|+ |++= .++++.. --|.|+||++||.|.... .-+.-||+|+++|.-..
T Consensus 80 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 80 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCC
Confidence 2322232 3321 1333322 137899999999996421 22557999999998753
No 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.55 E-value=0.00043 Score=73.21 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCC------CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG------EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.....++..+|++.+++.+.+.||.||.||.|..... .|.. +.|.++. +
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~---------------------~- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP---------------------S- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT---------------------T-
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec---------------------C-
Confidence 4557888899999999999999999999999998543 1111 2332210 0
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC-----CCCcccccccceeeEeccCCH-H
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS-----NTSRHLAEFWMIEPELAFADL-K 280 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~-----~t~rHl~EFtmlE~e~~~~~~-~ 280 (491)
. +.++||.-..+..+ .+...- + =|+|++++|||+|-. .+--=.-||+|.|.+.--.+. +
T Consensus 273 -----~--~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 273 -----R--FEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp -----T--SSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred -----C--CCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 0 23456766666655 333322 1 279999999999954 111112499999998865554 7
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
+..+..++++..
T Consensus 346 ~s~~~~e~~l~~ 357 (501)
T 1wle_A 346 QSSELLEEFLSL 357 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887766
No 58
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.55 E-value=0.00018 Score=76.52 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+... + | .-+.|.++....
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~-------------------- 110 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGL-------------------- 110 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETT--------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCC--------------------
Confidence 4557788899999999999999999999999987542 1 1 124555543210
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC--CCCcccccccceeeEeccCCHHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (491)
.=-+.+++|+--.+-.. .+.... + =|+||+++|||+|-. .+-.-.-||+|.|.+....+.++..+
T Consensus 111 -----~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~ 185 (518)
T 3ial_A 111 -----QPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVS 185 (518)
T ss_dssp -----EEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred -----cccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHH
Confidence 00024456655444433 333222 2 279999999999943 11012359999999998789988888
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.++.++..
T Consensus 186 e~~~~l~~ 193 (518)
T 3ial_A 186 QLSDYWKV 193 (518)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887755
No 59
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.52 E-value=0.00025 Score=75.46 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.+.+.||.||.||+|.+... .|.. +.|.++....
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~--------------------- 116 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK--------------------- 116 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC---------------------
Confidence 346778899999999999999999999999987542 1221 2333332110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCC-C-cccccccceeeEeccCCHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNT-S-RHLAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t-~-rHl~EFtmlE~e~~~~~~~~lm~~ 285 (491)
.+ .+.+++|+--.+-.. .+.... + =|+|++|+|||+|-..+ . .=.-||+|.|.+..|.+.++..+.
T Consensus 117 ---~~-l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E 192 (519)
T 4hvc_A 117 ---TE-LAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEE 192 (519)
T ss_dssp ---EE-EEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHH
T ss_pred ---cc-cccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHH
Confidence 00 012345544443333 333222 2 37999999999994311 1 012499999999999998888888
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
++.++..
T Consensus 193 ~~~~l~~ 199 (519)
T 4hvc_A 193 VLQILDL 199 (519)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877655
No 60
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.43 E-value=0.0005 Score=73.35 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
+-.-.++|..|.+.+|+.|...||.||.||++.... ++..-..|.+...+
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~------------------------ 132 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 132 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCC------------------------
Confidence 455678899999999999999999999999997642 11111233221110
Q ss_pred cccccCcccccccchhhH---HHHHhcc---CCceEEEccccccCCCCC-CcccccccceeeEeccC
Q 011197 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~---lql~~~g---~~rvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~ 277 (491)
++.+.|+ |++= .++++.. --|.|+||++||.|.... .=+.-||+|+++|.-..
T Consensus 133 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 133 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 2222232 2321 1433332 137899999999996421 12457999999998753
No 61
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.42 E-value=0.00025 Score=74.86 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++..|.+.+|+.|.+.||.||.||++..... .|. .+.|.++..
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~-------------------------- 101 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIE-------------------------- 101 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEET--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecC--------------------------
Confidence 5778899999999999999999999999998542 121 133433110
Q ss_pred ccccCcccccccchhhHH-HHH-----hc----cC-CceEEEccccccCCCC--CC-cccccccceeeEeccCCHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA-ETY-----AT----AL-SNVYTFGPTFRAENSN--TS-RHLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-ql~-----~~----g~-~rvfeI~~~FR~E~~~--t~-rHl~EFtmlE~e~~~~~~~~lm~ 284 (491)
+.+++|+--.+... ++. .. .+ -|+|+||+|||+|... .. .-.-||+|.|+|.- .+.++..+
T Consensus 102 ----~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f-~~~~~~~d 176 (471)
T 3a32_A 102 ----GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHII-VPGGRVID 176 (471)
T ss_dssp ----TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEE-EEGGGHHH
T ss_pred ----CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEE-cChHHHHH
Confidence 23444443333222 221 11 23 4899999999999652 11 02359999999986 44444444
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.+.+++..
T Consensus 177 e~~e~i~~ 184 (471)
T 3a32_A 177 VVYDVFEE 184 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455443
No 62
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.37 E-value=0.0005 Score=73.36 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.....+++..+++.+++.+.+.||.||.||.|...... |.- +.|.++
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------------------------- 325 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------------------------- 325 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-------------------------
Confidence 34578899999999999999999999999999985431 111 222220
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCH--
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADL-- 279 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~-- 279 (491)
+.++||.-..+..+ .+.... + =|+|++++|||+|-+. +-.-.-||+|.|.+. |..-
T Consensus 326 -------~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~ 397 (536)
T 3err_A 326 -------ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASL 397 (536)
T ss_dssp -------TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCH
T ss_pred -------CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCch
Confidence 23456666665554 332221 1 2799999999999631 112345999999985 5543
Q ss_pred HHHHHHHHHHHHH
Q 011197 280 KDDMACATAYLQL 292 (491)
Q Consensus 280 ~~lm~~~e~li~~ 292 (491)
++..+..++++..
T Consensus 398 e~s~~~~e~~~~~ 410 (536)
T 3err_A 398 EASDRAFQELLEN 410 (536)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4888888877766
No 63
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.34 E-value=0.00077 Score=71.63 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHh--hCCcEEeecceeeccC
Q 011197 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~--~~~F~EV~TPiL~~~~ 179 (491)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 467888999999999999 8999999999999975
No 64
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.34 E-value=0.00049 Score=72.80 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....+++..+++.+++.+.+.||.||.||.|..... .|. -+.|.++..... + .
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~----------~-----~---- 258 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSE----------K-----S---- 258 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCcc----------c-----c----
Confidence 357888999999999999999999999999987543 111 134444211000 0 0
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCHH--
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLK-- 280 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~-- 280 (491)
.+--+.++||.-..+..+ .+...- + =|+|++++|||+|-+- +---.-||+|.|.+. |..-+
T Consensus 259 --~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e 335 (522)
T 3vbb_A 259 --DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDN 335 (522)
T ss_dssp -------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTT
T ss_pred --ccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChH
Confidence 000023456665555544 222211 1 2699999999999641 101224999999985 55433
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
+..+..++++..
T Consensus 336 ~s~~e~e~ml~~ 347 (522)
T 3vbb_A 336 KSWEMFEEMITT 347 (522)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367777776665
No 65
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.32 E-value=0.00033 Score=74.40 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHH-HHhhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcc--cccCCCCCCCCCCCC-
Q 011197 145 GAVARVRNALAYATHK-FFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSR--EAAESPVDAIPKTKD- 212 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~-ff~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~--~~~~~~~~~~~~~~~- 212 (491)
-.-.+++..|.+.+++ ++.+.||.||.||+|.+... .|.. +.|.++......+ +... .+......+
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~--~~~~~~~~~~ 305 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEV--ADYYKVTHEV 305 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHH--HHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhh--hhhhhccccc
Confidence 4567788899999996 68999999999999998532 1111 2333321000000 0000 000000000
Q ss_pred CCcCccccccCcccccccchhhHH-HHHh----c--cCC-ceEE-EccccccCCC--CCCcccccccceeeEeccCCHHH
Q 011197 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYA----T--ALS-NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (491)
Q Consensus 213 ~~~~~~~~~f~~~~~L~~Spql~l-ql~~----~--g~~-rvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~ 281 (491)
...++...--+.++||+-..+... .+.. + .+. |+|+ |++|||+|.. ++---.-||+|.|++. |.+.++
T Consensus 306 ~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 306 PTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp CHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred cccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 000000000023445554443322 2221 1 122 7999 9999999933 1112335999999998 788888
Q ss_pred HHHHHHHHHHH
Q 011197 282 DMACATAYLQL 292 (491)
Q Consensus 282 lm~~~e~li~~ 292 (491)
..+..++++..
T Consensus 385 s~ee~ee~i~~ 395 (522)
T 2cja_A 385 VLKCAEELHDR 395 (522)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888833
No 66
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=96.60 E-value=0.0055 Score=59.79 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=54.6
Q ss_pred HHHHHH--HHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccc
Q 011197 154 LAYATH--KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (491)
Q Consensus 154 i~~~iR--~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S 231 (491)
+.+.+| +.|.+.||.||.||++.....-.. +.| ...+ +.-+..+--++
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f--~d~~-------------------------g~~l~LRpd~T-- 55 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF--LDRK-------------------------GNLFSIREDFT-- 55 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE--EETT-------------------------SCEEEECCCHH--
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc--CCCC-------------------------CCEEEeCCcCh--
Confidence 344555 999999999999999998654221 233 1110 01111111111
Q ss_pred hhhHH-HHHhc--cCCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 232 GQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 232 pql~l-ql~~~--g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
|.+.. ++.-. .--|.|++|+|||.|.+. . -||||+++|.-..+
T Consensus 56 ~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 56 KTVLNHRKRYSPDSQIKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRN 101 (275)
T ss_dssp HHHHHHHTTCTTCCCEEEECCEEEEEEETTE-E---EEEEEEEEEEESCC
T ss_pred HHHHHHHhhcCCCCceEEEEeceEEecCCCC-C---CeeeEeCEEEecCC
Confidence 22222 12111 124899999999999773 2 79999999997664
No 67
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.46 E-value=0.03 Score=48.29 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=64.7
Q ss_pred ceeeccccCCcccCC-----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCCc
Q 011197 11 KLKIVDVKGGPNEGL-----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGA 84 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~-----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~gd 84 (491)
.++|++|++....++ ...=..|++.|+|.++.....-.-+.|.|+|| ..|.+....+...- ..... +..|+
T Consensus 8 PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g~ 84 (132)
T 3kdf_D 8 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPET 84 (132)
T ss_dssp ECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTTC
T ss_pred eEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCCC
Confidence 367788866431111 11224589999999998876655668999997 25999887653211 11334 99999
Q ss_pred EEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 85 ~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
+|.|.|.+..-+. ...|.+..+..+..
T Consensus 85 yVrV~G~l~~f~g---~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 85 YVKVAGHLRSFQN---KKSLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEECSS
T ss_pred EEEEEEEEEeECC---EEEEEEEEEEEcCC
Confidence 9999999987543 47788887776543
No 68
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.42 E-value=0.0024 Score=63.89 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCC-cccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPS-SREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (491)
...-+++..+.+.+++ ..+.||.||.||.|..... ++.+ ..|.+...... .++... +....++ .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~l-----l~~~~~~-~ 133 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAA-----VSRFDAG-G 133 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHH-----HHHHHTT-S
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhh-----hhhhccc-c
Confidence 4566778889999999 8899999999999988543 2221 23333211000 000000 0000000 0
Q ss_pred CccccccCcccccccchhhHH-HHHhc-c-C----CceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~-g-~----~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
++....-+..+||.-..+..+ .+... | + -|+-.+++|||.|.+.+--..-+|+|.|+-. |.+-+++.+..++
T Consensus 134 ~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~ 212 (346)
T 3mf2_A 134 DWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRER 212 (346)
T ss_dssp CGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHH
T ss_pred ccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHH
Confidence 010111123456666666666 44442 2 2 3566799999999876666777999999965 5789999999999
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
++..
T Consensus 213 l~~~ 216 (346)
T 3mf2_A 213 WMVR 216 (346)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8877
No 69
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.38 E-value=0.034 Score=48.18 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=65.1
Q ss_pred ceeeccccCCccc--CC-----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch--hhhhhcCCC
Q 011197 11 KLKIVDVKGGPNE--GL-----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~--~~-----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~--~~~~~~~L~ 81 (491)
.++|++|++.... ++ ...=..|++.|+|.+++....-.-+.|.|+|| .|.+....+.... ..... +.
T Consensus 11 PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG--~I~~~~W~~~~~~~~~~~~~--~~ 86 (136)
T 4gop_B 11 PVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTG--QIEVRQWLDSSSDDSSKASE--IR 86 (136)
T ss_dssp ECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSC--EEEEEEECC--------CCS--CC
T ss_pred eEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCC--CEEEEEecccCCcccccccc--cC
Confidence 4778888654211 00 12235689999999998876655567999997 4999887643221 12335 99
Q ss_pred CCcEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
.|++|.|.|.+..-+. ...|.+..+..+..
T Consensus 87 ~g~yVrV~G~v~~f~g---~~qi~~~~ir~v~d 116 (136)
T 4gop_B 87 NNVYVRVLGTLKSFQN---RRSISSGHMRPVID 116 (136)
T ss_dssp TTCEEEEEEEEEEETT---EEEEEESEEEECSS
T ss_pred CCCEEEEEEEEEEeCC---EEEEEEEEEEECCC
Confidence 9999999999977543 46788887775543
No 70
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.38 E-value=0.038 Score=49.29 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=61.5
Q ss_pred CcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-h-hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-Y-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
=+.|+|.|.|.+++...+...+.|-|+|| ..|.|++..+... - ..... +..|++|.|.|.+..-.. +.+|.+
T Consensus 47 I~~V~IvGiVv~~~~~~~~~~ytIDD~TG-~~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~ 120 (159)
T 3kf6_A 47 IRWIQIVGYIAAIDIYEGKHVLTVDDCSG-MVLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIA 120 (159)
T ss_dssp ECEEEEEEEEEEEEEETTEEEEEEECSSS-CEEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEE
T ss_pred EEEEEEEEEEEEEEEeCCEEEEEEecCCC-CeEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEE
Confidence 35699999999999876777788999998 3699998765421 1 11224 899999999999976543 579999
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
+++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99998864
No 71
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.28 E-value=0.048 Score=45.14 Aligned_cols=88 Identities=13% Similarity=0.225 Sum_probs=65.9
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeec-------C---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcC
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~-------~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~ 79 (491)
...+|+||.. +..|.|.|+|.++-. . +++.=+.|.|.+| +|.+.+..+... . .
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~---~-~-- 66 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTD---I-D-- 66 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGG---S-C--
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECcccc---c-c--
Confidence 4467777753 267999999988631 2 2355578899986 599988754321 1 4
Q ss_pred CCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCC
Q 011197 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~ 116 (491)
|..||+|.+.|.++....+ ++||++.+...+.+|.
T Consensus 67 l~~Gdvv~i~g~vk~~~~g--~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 67 VGRGDYVRVRGYIREGYYG--GLECTANYVEILKKGE 101 (105)
T ss_dssp CCTTCEEEEEEEEEECTTS--SEEEEEEEEEEEECCC
T ss_pred cCCCCEEEEEEEEEEccCC--CEEEEeCCceEEEecc
Confidence 9999999999999887543 6999999999999986
No 72
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.23 E-value=0.0099 Score=61.99 Aligned_cols=108 Identities=12% Similarity=-0.052 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hCC-cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 146 AVARVRNALAYATHKFFQ-ENG-FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~-~~~-F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
.-..+|+.|++..|..|. +++ +.||+||+...-...|.- +-|.
T Consensus 102 ~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~-----------------------------------d~~~ 146 (459)
T 3ikl_A 102 LGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGD-----------------------------------SAFR 146 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSC-----------------------------------SCCT
T ss_pred cHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcch-----------------------------------hhhc
Confidence 356788999986665554 355 788999993332111211 2222
Q ss_pred ccccccc-chhhHHH----HHhcc---C-CceEEEccccccCC--CCCCccc----ccccceeeEeccCCHHHHHHHHHH
Q 011197 224 KPAFLTV-SGQLNAE----TYATA---L-SNVYTFGPTFRAEN--SNTSRHL----AEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 224 ~~~~L~~-Spql~lq----l~~~g---~-~rvfeI~~~FR~E~--~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
.||+. .-|-+.. .+-.. + =++.|||+|||+|. + +.+|- -||||.|.+ -|.+-++..+..+.
T Consensus 147 --~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~ 222 (459)
T 3ikl_A 147 --GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDF 222 (459)
T ss_dssp --TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEE-EEECGGGHHHHHHH
T ss_pred --ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccc-cCCCCcccccceeeeeEE-EEeChhHHHHHHHH
Confidence 45553 2232221 11111 1 15899999999994 2 33332 599999998 46776666666666
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
++..
T Consensus 223 ~~~~ 226 (459)
T 3ikl_A 223 WLRH 226 (459)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 73
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.09 E-value=0.087 Score=42.84 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=60.6
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee---c----CC---CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R---~----~g---kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.+|+||.. +..|.+.|+|.++- . .| ++.=+.|.|.|| +|.+.+..+... . . +.
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 46777753 36799999998863 2 22 355578899996 599987754321 1 4 99
Q ss_pred CCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
.||+|.|.|.+..... .+||.+.+...+.+|
T Consensus 66 ~Gdvv~i~g~v~~~~~---~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGYS---GLEISVDNIGIIEKS 96 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEcCC---eEEEEECCCcEEEEC
Confidence 9999999998866543 699999999888776
No 74
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=95.98 E-value=0.0028 Score=69.72 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-hCCcEEeecceeeccC
Q 011197 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASD 179 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~ 179 (491)
-.-.+++..|.+.+|+.|. ..||.||.||+|++..
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~ 133 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEP 133 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHH
Confidence 4567889999999999998 6699999999999853
No 75
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.78 E-value=0.016 Score=60.71 Aligned_cols=131 Identities=9% Similarity=0.043 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHH--hhCCcEEeecceeeccCCCCC---CCceeeeecCCCcccccCCCCCCCCCCCCC-C----c
Q 011197 146 AVARVRNALAYATHKFF--QENGFIWISSPIITASDCEGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDG-L----I 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff--~~~~F~EV~TPiL~~~~~eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~-~----~ 215 (491)
.-.+++..|.+.+++.+ .+.|+.||+||+|.+..--.+ +..|...++.. .. .+ +| + .
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e-----------~~-~~-~g~~~eem~ 126 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIRE-----------IL-QD-REPSKEQLV 126 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHH-----------HH-CC----CHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHH-----------Hh-hc-cCCCHHHHH
Confidence 35788899999999774 589999999999998652111 11110111100 00 00 00 0 0
Q ss_pred CccccccCccccccc--chhhHH---HHHhc---cC-CceEEEccccc---cCCCCCCcc----cccccceeeEeccCCH
Q 011197 216 DWSQDFFEKPAFLTV--SGQLNA---ETYAT---AL-SNVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADL 279 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~--Spql~l---ql~~~---g~-~rvfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~~~~~~ 279 (491)
..-.++++.+.||+. +|-.+. ..+-. -+ =+++|||+||| ||-+ .+| .-||||.|++. |++.
T Consensus 127 ~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~p 203 (454)
T 1g5h_A 127 AFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPT 203 (454)
T ss_dssp HHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECH
T ss_pred HHHHhhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCH
Confidence 000012344566664 322222 22222 23 26999999999 6853 243 46999999985 7788
Q ss_pred HHHHHHHHHHHHH
Q 011197 280 KDDMACATAYLQL 292 (491)
Q Consensus 280 ~~lm~~~e~li~~ 292 (491)
++..+..+.++..
T Consensus 204 e~~~e~~~~~~~~ 216 (454)
T 1g5h_A 204 RTSSQWLDFWLRH 216 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 7776666665554
No 76
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.70 E-value=0.054 Score=60.54 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCC----CCC-ceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEG----AGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg----~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
..++.+.+|+.|...||.|+.|..+++..--. ..+ .+.+ .|| .+.+ -
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L--~NP----------------------is~e----~ 546 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL--LMP----------------------MSEA----H 546 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC--SSC----------------------SCTT----S
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE--cCC----------------------Cchh----h
Confidence 45678889999999999999999998764210 112 1222 221 0011 1
Q ss_pred cccccchhhHH-HHHh----ccCC--ceEEEccccccCCCCCCcccccccceeeEecc-------------CCHHHHHHH
Q 011197 226 AFLTVSGQLNA-ETYA----TALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMAC 285 (491)
Q Consensus 226 ~~L~~Spql~l-ql~~----~g~~--rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~-------------~~~~~lm~~ 285 (491)
..|++|-=--+ +.+. .+.. |+||||+|||.++. +..| +||+||..-++. .|+.++...
T Consensus 547 svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~ 624 (795)
T 2rhq_B 547 ATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGV 624 (795)
T ss_dssp SEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHH
Confidence 23555544333 4333 2333 79999999997543 2357 999999986664 589999999
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
+|.++..
T Consensus 625 le~ll~~ 631 (795)
T 2rhq_B 625 VDRVAEK 631 (795)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998887
No 77
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.69 E-value=0.042 Score=45.96 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEeee---e----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 28 ~~~~V~v~G~V~~~---R----~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
.|+.+.+.|.|.++ | .. +++..+.|.|++| .|.+.+-.+... .... |..|++|.|.|.+....-
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEcccc
Confidence 46778999999988 2 12 3688899999996 599988865421 2235 999999999999865421
Q ss_pred CceeEEEEEeeEEEEccC
Q 011197 98 SKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 98 ~~~~~el~~~~i~ils~~ 115 (491)
.+.++|.+.+...+.++
T Consensus 89 -~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 -GGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp -SSSCEEEECTTCCEEEE
T ss_pred -CCeEEEEECCCceEEEC
Confidence 13578887765555444
No 78
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.49 E-value=0.043 Score=59.25 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCC--C------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
.++.+.+|+.|...||.||.|+.+++..- + +..+.+.+ .|| .+.++
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NP----------------------is~e~-- 447 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNP----------------------KTAEF-- 447 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSC----------------------SSGGG--
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCC----------------------CchhH--
Confidence 45688899999999999999999987421 0 11122221 121 01111
Q ss_pred cccccccchhhHH-HHHhccC-----CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNA-ETYATAL-----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 224 ~~~~L~~Spql~l-ql~~~g~-----~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
..|++|-=--+ +.+.... =|+||+|+|||.++. ..+|.+|+.++..-+... ++.++...++.++..
T Consensus 448 --svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 448 --QVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp --SEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 24566543333 5443221 269999999998765 467889999999877654 578877777765555
No 79
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.43 E-value=0.055 Score=45.08 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=60.4
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
++++++... ..+..|+|.|.|.+.-..-+ ..++|++| .|+|-++.+. |. -.. +++++-|.|.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG--~I~VeId~~~--w~-g~~--v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDDL---YVFKDASG--TINVDIDHKR--WN-GVT--VTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEECCGGG--ST-TCC--CCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCCe---EEEECCCc--cEEEEEChhh--cC-Ccc--cCCCCEEEEEEE
Confidence 566666643 57889999999987643322 35799996 5998887643 21 124 899999999999
Q ss_pred EEecCCCceeEEEEEeeEEEEcc
Q 011197 92 VVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ils~ 114 (491)
+-+.-. ..||.|..|+++.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 997543 46999999998753
No 80
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.11 E-value=0.045 Score=51.18 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCC-C-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEG-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
.++.+.+|+.|...||.||-|-.+++...-. . .+. |.-.|| .+.+ -
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~--v~l~NP----------------------ls~e----~ 58 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL--VMLLNP----------------------LSAD----L 58 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGC--EEBSSG----------------------GGCS----C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCe--EEEeCC----------------------cchh----H
Confidence 4678899999999999999999999853211 0 011 111221 0111 1
Q ss_pred cccccchhhHH-HHHhc----cCC--ceEEEccccccCCCCCC-----cccccccceeeEecc-------------CCHH
Q 011197 226 AFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLK 280 (491)
Q Consensus 226 ~~L~~Spql~l-ql~~~----g~~--rvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~-------------~~~~ 280 (491)
-.|++|-=--+ +.++. +.. |+||||+||+.++.+.. .+..|..+|-+-++. .|+.
T Consensus 59 ~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~ 138 (213)
T 3ig2_A 59 NCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVY 138 (213)
T ss_dssp CEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHH
Confidence 24666644444 54443 333 79999999997653211 234588888876655 3577
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
|+...+|.++..
T Consensus 139 dlKg~ve~ll~~ 150 (213)
T 3ig2_A 139 ELKAYVENIFKR 150 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776666
No 81
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=94.54 E-value=0.27 Score=47.65 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=65.7
Q ss_pred cceeeccccCCcccCC--CCCC---cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCC
Q 011197 10 KKLKIVDVKGGPNEGL--DRVG---LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~--~~~~---~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~g 83 (491)
..++|++|++....+. ...+ ..|++.|+|.++...+.-.-+.|.|++| ..|.+.+..+...- ..... +..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCC
Confidence 3488888876521100 0112 3589999999997776656667999997 24899887543211 11234 9999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
++|.|.|.+..-+. ...|.+..+..+..
T Consensus 124 ~yVrV~G~v~~f~g---~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQN---KKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecCC---eeEEEEEEEEecCC
Confidence 99999999987643 46778777776544
No 82
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=93.89 E-value=0.14 Score=47.81 Aligned_cols=115 Identities=16% Similarity=0.077 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCce----eeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQF----CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F----~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 227 (491)
.++.+.+|+.|...||.||-|-.+++...-..-... .|.-.|| .+.+ --.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NP----------------------ls~e----~~v 60 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNP----------------------LSQE----LNC 60 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSB----------------------SCSS----EEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCC----------------------ccHH----HHH
Confidence 467889999999999999999999985321100000 0111121 0111 124
Q ss_pred cccchhhHH-HHHh----ccCC--ceEEEccccccCCCC----C-CcccccccceeeEecc-------------CCHHHH
Q 011197 228 LTVSGQLNA-ETYA----TALS--NVYTFGPTFRAENSN----T-SRHLAEFWMIEPELAF-------------ADLKDD 282 (491)
Q Consensus 228 L~~Spql~l-ql~~----~g~~--rvfeI~~~FR~E~~~----t-~rHl~EFtmlE~e~~~-------------~~~~~l 282 (491)
|++|-=--+ +.++ .+.. |+||||+||+.++.. . ..+..|..+|-+.++. .|+.|+
T Consensus 61 mRtsLlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~ 140 (213)
T 3ica_A 61 MRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFEL 140 (213)
T ss_dssp ECSSSHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHH
Confidence 666644443 4433 3554 799999999976431 0 1345688888776655 478999
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
...+|.++..
T Consensus 141 Kg~ve~ll~~ 150 (213)
T 3ica_A 141 KAVVEQVLCR 150 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 83
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=93.70 E-value=0.6 Score=38.63 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=61.1
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeec--C-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~--~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
+|+||.. .+..|.+.|+|.++-. . +....+.|.|.|| +|-+.+..+. .... +..|++|.|+
T Consensus 7 kI~dl~~--------~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG--~I~~t~W~~~----~~~~--~~~G~~V~i~ 70 (109)
T 2kbn_A 7 KIVDIVE--------NGQWANLKAKVIQLWENTHESISQVGLLGDETG--IIKFTIWKNA----ELPL--LEQGESYLLR 70 (109)
T ss_dssp CTTTCCS--------TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTC--CEEEEEEGGG----CCCC--CCTTCEEEEE
T ss_pred EHHHCCC--------CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCC--eEEEEEECcc----cccc--cCCCCEEEEE
Confidence 4666653 3577999999999743 2 2344578999997 4888887532 1234 9999999999
Q ss_pred -EEEEecCCCceeEEEEEeeEEEEccCCCC
Q 011197 90 -GNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (491)
Q Consensus 90 -G~v~~~~~~~~~~el~~~~i~ils~~~~~ 118 (491)
|.+..-+ +.++|.+.+...+.+....
T Consensus 71 n~~v~~~~---G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 71 SVVVGEYN---DRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp EEEEEEET---TEEEEEECSSSEEEECSSC
T ss_pred EEEEEEEC---CEEEEEECCceEEEECCCc
Confidence 6666643 3689999887766665433
No 84
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=93.20 E-value=0.71 Score=47.03 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEeee-ec-CCCeEEEEEEcCCCccceEEEEeCCccchhh-hhhcCCCCCcEEEEEEEEEecCCCceeEEE
Q 011197 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (491)
Q Consensus 28 ~~~~V~v~G~V~~~-R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~v~~~~~~~~~~el 104 (491)
....++|.|.|.+. +. .|.=.|+.|.|+++ .|.|++=.....|.. +.. |..||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETTE--EEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCCC--EEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--EE
Confidence 45789999999998 55 47778889999864 599888553223433 456 999999999999765 2 88
Q ss_pred EEeeEEEEccC
Q 011197 105 KVNKIVLVGKS 115 (491)
Q Consensus 105 ~~~~i~ils~~ 115 (491)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998775
No 85
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=92.92 E-value=0.86 Score=42.47 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCcEEEEEEEEeeeecCC--------CeEEEEEEcCCCcc-ceEEEEeCCccchhhh-hh-cCCCCCcEEEEEEEEEecC
Q 011197 28 VGLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQV-KS-GLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~g--------kl~Fi~LrD~~g~~-~iQvv~~~~~~~~~~~-~~-~~L~~gd~V~V~G~v~~~~ 96 (491)
.=+.|.|.|.|..++..- ...|+.|-|.||.. .|.|.++.. .+... .. +....|.+|.|+|++..-.
T Consensus 84 PI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~--~~~~~gl~l~~~~~G~iV~VkG~i~~~r 161 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQE--QFKEVGLTLDKKNYGKIVELEGEIYNWY 161 (220)
T ss_dssp EECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHH--HHHTTTCCTTSCCTTCEEEEEEEEEECC
T ss_pred ccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHH--HhhccCccccccCCCeEEEEEEEEEeec
Confidence 346799999999997542 35889999999842 466655532 12111 01 0145899999999998753
Q ss_pred C-----CceeEEEEEeeEEEEccC
Q 011197 97 G-----SKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 97 ~-----~~~~~el~~~~i~ils~~ 115 (491)
. +.-+-||.|+++.+++..
T Consensus 162 ~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 162 DSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CSTTTTSCCCEEEEEEEEEEEESS
T ss_pred cccccccccceEEEEEEEEEeccC
Confidence 2 111459999999999875
No 86
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=92.76 E-value=1.3 Score=36.43 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=61.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee-----cCCC---eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-----~~gk---l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
++|+||... ...|.+.|+|.++- ..|+ +.=+.|.|.|| +|.+.+..+ . |..|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG--~I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA--RIRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC--EEEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC--eEEEEEEcC--------c--cCCC
Confidence 457777542 34578888887752 2343 66678899996 488887754 2 8899
Q ss_pred cEEEEE-EEEEecCCCceeEEEEEeeEEEEccCCCCCCCC
Q 011197 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (491)
Q Consensus 84 d~V~V~-G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~ 122 (491)
|+|.|. |.+..-+ +.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCccc
Confidence 999999 7765543 36999998877777765446654
No 87
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.65 E-value=0.47 Score=39.74 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=46.6
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+.+. + . +.|....+ +.|+|.++... . +..+.+|.|.|++.....+-|...|.+
T Consensus 16 ~~g~~VrivGkV~~~~g-~--~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG-N--T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET-T--E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC-C--E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999985 2 2 34664433 35777776532 2 556899999999985543333466665
Q ss_pred ee
Q 011197 107 NK 108 (491)
Q Consensus 107 ~~ 108 (491)
..
T Consensus 82 ~~ 83 (114)
T 4gop_A 82 FT 83 (114)
T ss_dssp CS
T ss_pred EE
Confidence 43
No 88
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=91.62 E-value=1 Score=37.67 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred cEEEEEEEEeee---e----cCC--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE-EEEEecCCCc
Q 011197 30 LMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSK 99 (491)
Q Consensus 30 ~~V~v~G~V~~~---R----~~g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~v~~~~~~~ 99 (491)
..|.+.|.|.++ | ..| +..=+.|.|.|| .|.+.+..+.. .. +..|++|.|+ |.+..-+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~I~~tlW~~~~-----~~--~~~G~vv~i~~g~v~~~~--- 80 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKHA-----GS--IKEGQVVKIENAWTTAFK--- 80 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGGT-----TC--CCTTCEEEEEEEEEEEET---
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--EEEEEEECChh-----hc--CCCCCEEEEEeEEEEEeC---
Confidence 358899999887 4 224 366677899997 48888875431 24 8999999999 7776543
Q ss_pred eeEEEEEeeEEEEccCC
Q 011197 100 QKVELKVNKIVLVGKSD 116 (491)
Q Consensus 100 ~~~el~~~~i~ils~~~ 116 (491)
+.++|.+.+...+.++.
T Consensus 81 g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TEEEEEECTTCEEEECC
T ss_pred CEEEEEECCCEEEEEcC
Confidence 36899998765555543
No 89
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=91.54 E-value=0.86 Score=38.54 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+++..|+.+- |.+.-+ +.++|.++.... .. + +.+|.|.|++.. ..+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~--l~s~Dg-~~Vtv~l~~p~~-----~~--l--~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFI--LSDGEG-KNGTIELMEPLD-----EE--I--SGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEE--EECTTS-CEEEEECSSCCS-----SC--C--CSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEE--EEeCCC-CEEEEEeCCCCC-----cc--c--CcEEEEEEEECC------CCeEEE
Confidence 68999999999999997776443 444333 358887775321 12 4 459999999974 246777
Q ss_pred eeEEEEccC
Q 011197 107 NKIVLVGKS 115 (491)
Q Consensus 107 ~~i~ils~~ 115 (491)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777766653
No 90
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=90.28 E-value=1.2 Score=49.64 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 149 RVRNALAYATHKFFQENGFIWISSPIITASDCE---G-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
.-..++.+.+|+.|...||.|+-|-.+++..-- + ..+.+.+ .|| .+.++
T Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NP----------------------is~d~--- 541 (785)
T 1b7y_B 489 EAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNP----------------------LAPEK--- 541 (785)
T ss_dssp THHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSC----------------------SSTTS---
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCC----------------------Cchhh---
Confidence 345678889999999999999999888875310 0 1222322 222 01111
Q ss_pred ccccccchhhHH-HHHh----cc-C--CceEEEccccccCCCCCCcccccccceeeEecc------------CCHHHHHH
Q 011197 225 PAFLTVSGQLNA-ETYA----TA-L--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMA 284 (491)
Q Consensus 225 ~~~L~~Spql~l-ql~~----~g-~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~------------~~~~~lm~ 284 (491)
..|++|-=--+ +.+. .+ . -|+||+|+||| + +||+||..-++. .|+.|+..
T Consensus 542 -svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg 611 (785)
T 1b7y_B 542 -AALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKG 611 (785)
T ss_dssp -SEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHH
T ss_pred -hhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHH
Confidence 23555543333 4333 23 3 37999999999 2 789999987765 47999999
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.+|.++..
T Consensus 612 ~le~ll~~ 619 (785)
T 1b7y_B 612 YLEALFAR 619 (785)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
No 91
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=90.19 E-value=1.4 Score=38.22 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=54.8
Q ss_pred CCCCCCCcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
|++.++.-..|+.-+-|.. +.|++|++-|+|.+.-..|+.+ .|+...+ ..|+|.+++.. . -
T Consensus 22 ~~~~m~~~~pRVN~s~L~~-------fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~ 82 (142)
T 2pi2_E 22 MVDMMDLPRSRINAGMLAQ-------FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--E 82 (142)
T ss_dssp -CCGGGSCCEEECGGGGGG-------STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--S
T ss_pred ccccccCCcceECHHHHHh-------hCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--c
Confidence 3444555555666655543 6899999999999994344433 4555544 35777665421 1 2
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
..+-+|.|.|+|... .+|.+..+.-++.
T Consensus 83 ~~~~~VEViG~V~~~------~tI~~~~~~~fGd 110 (142)
T 2pi2_E 83 EISGIVEVVGRVTAK------ATILCTSYVQFKE 110 (142)
T ss_dssp CCCSEEEEEEEECTT------SCEEEEEEEECCC
T ss_pred cCCCEEEEEEEECCC------CcEEEEEEEecCC
Confidence 347799999999442 3566666655554
No 92
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=89.97 E-value=0.78 Score=38.45 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.6
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~ 121 (491)
|+||+..+.. +.++. |+.|+-|.|+|.+.........++|++++|+.++.....-|+
T Consensus 49 i~vv~~Gk~A--E~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLA--LLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHH--HHHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHH--Hhhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 7888876432 22455 999999999999987433225799999999999876554554
No 93
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=88.87 E-value=0.64 Score=38.72 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=63.1
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLI 80 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L 80 (491)
-+.|++|... ....+|+|||.++ |. .|++.=++|.|.+| .|++.+..+.. .| ... |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f--~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKF--NEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHH--HHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHH--Hhh--c
Confidence 4678888653 2247889999864 21 36788889999997 69999976432 12 234 9
Q ss_pred CCCcEEEEEE-EEEecCCC----ceeEEEEEeeEEEEccCC
Q 011197 81 TTGASIWIQG-NVVPSQGS----KQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 81 ~~gd~V~V~G-~v~~~~~~----~~~~el~~~~i~ils~~~ 116 (491)
..|+++.|.+ .|...... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 9999999997 44443221 247899988777777764
No 94
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=87.03 E-value=4.7 Score=41.26 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.8
Q ss_pred CccceeccHHHHHHHHcCCCCccccccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
|+---|+|+|||++++-|.+|+=|+=+|
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf 259 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLF 259 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHH
T ss_pred CceecCCCHHHHHHHHcCCCccccchhH
Confidence 5666999999999999999999887444
No 95
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=81.20 E-value=1.8 Score=50.17 Aligned_cols=80 Identities=10% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
..|+.|+++|.|.+++.. | +++|+.|.|.+| .+.|++-++. |+..+ ..|..+.+|.|+|.+.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg--~~evvvf~~~--~~~~~-~~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETG--ALEVVVFGRA--YEGVS-PKLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTE--EEEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCC--CEEEEEcHHH--HHHHH-HHhccCCEEEEEEEEEECC----C
Confidence 357889999999988652 2 499999999996 4999887653 34333 2389999999999997653 3
Q ss_pred EEEEEeeEEEEccC
Q 011197 102 VELKVNKIVLVGKS 115 (491)
Q Consensus 102 ~el~~~~i~ils~~ 115 (491)
+.|.++++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 77888888766544
No 96
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=80.34 E-value=0.67 Score=47.43 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=33.7
Q ss_pred EEEEEEeCCee-EeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCC
Q 011197 403 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 473 (491)
Q Consensus 403 ~~fdl~~~G~g-Ei~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~ 473 (491)
--|+.+.+|.| .|++|+ ||+.+.+.+ | |..|..||+||+|||+.++...
T Consensus 281 ~vFe~~~~~~g~~i~~GG----RYD~L~~~f---G---------------~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 281 VVFEGYGNRLGVPLCSGG----RYDELLSKF---H---------------RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEEETTCSSEEEEEE----ECTTHHHHT---T---------------CCCCEEEEEEEHHHHHHHHCC-
T ss_pred eEEEEEECCCCCeeeccc----ccchhhhcc---C---------------CCCCEEEEEeeHHHHHHHHHhc
Confidence 45999998764 777776 333333322 1 2258999999999999988654
No 97
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=79.50 E-value=3.1 Score=39.12 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=62.5
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCccchhhh-hhcC
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGL 79 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~ 79 (491)
.-+.|++|... ...++|+|||.++ |. .|++.=++|.|.+| .|++.+..+.. +.+ ..
T Consensus 7 ~~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~~~~~-- 72 (246)
T 1jmc_A 7 KVVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQV--DKFFPL-- 72 (246)
T ss_dssp CBCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHH--HHHGGG--
T ss_pred ceEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHH--HHhhhh--
Confidence 34678888653 2347899999875 32 25666788999997 59999886431 122 24
Q ss_pred CCCCcEEEEEEE-EEecCC----CceeEEEEEeeEEEEccCC
Q 011197 80 ITTGASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 80 L~~gd~V~V~G~-v~~~~~----~~~~~el~~~~i~ils~~~ 116 (491)
|..|+++.+.+- |..... ..+.+||....-+.+.+|.
T Consensus 73 l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 73 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 999999999974 443321 1347899887666666664
No 98
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=77.38 E-value=29 Score=29.65 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=57.2
Q ss_pred eeeccccCCcc--cCCCCCCcEEEEEEEEe--ee-ec--CCCeEEEEEEc-CCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 12 LKIVDVKGGPN--EGLDRVGLMIVVAGWVR--TL-RA--QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 12 ~~i~~l~~~~~--~~~~~~~~~V~v~G~V~--~~-R~--~gkl~Fi~LrD-~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
.+..++..... +.....++.++|.|.|. ++ |. ...+.|. |.| +. ..|.|+...-.+. +.+-|
T Consensus 13 ~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~~v~V~Y~GilPD-------lFrEG 82 (136)
T 1j6q_A 13 YTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLG--GEILVTYDDLLPD-------LFREG 82 (136)
T ss_dssp ECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTC--CCEEEEECSCCTT-------SCCSS
T ss_pred eCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCC--CEEEEEECCCCCc-------cccCC
Confidence 45666654310 00136789999999997 44 54 2468885 788 54 4688888765431 27889
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCC
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P 120 (491)
.-|-|+|.+.... .++|+ +||.||+..|-
T Consensus 83 qgVVa~G~l~~~g------~F~A~--eVLaKhdekY~ 111 (136)
T 1j6q_A 83 QGIVAQGVLGEDG------KLAAT--EVLAKHDENYM 111 (136)
T ss_dssp SEEEEEEEECSTT------SEEEE--EEECCC-----
T ss_pred CeEEEEEEECCCC------eEEEE--EEEecCCCCCC
Confidence 9999999996532 24555 48899986643
No 99
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=76.30 E-value=4.4 Score=33.06 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=35.2
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEE
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~il 112 (491)
++||+-.+. -+ +.. |+.|+-|.|+|.+....-....+.+++++++.+
T Consensus 55 i~vv~~gk~--Ae-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQ--AE-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHH--HH-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHH--hh-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 566665432 13 445 999999999999997655445899999999876
No 100
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=71.61 E-value=35 Score=29.20 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=55.2
Q ss_pred CCCCcEEEEEEEEe--ee-ecC--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCce
Q 011197 26 DRVGLMIVVAGWVR--TL-RAQ--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (491)
Q Consensus 26 ~~~~~~V~v~G~V~--~~-R~~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~ 100 (491)
...++.++|.|.|. ++ |.. ..+.|. |.|+. .+|.|....-.+. . .+-|.-|-|+|.+... +
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~--~~v~V~Y~GilPD-----l--FrEGqgVVa~G~l~~~--g-- 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAE--GSVDVSYEGILPD-----L--FREGQGVVVQGELEKG--N-- 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSS--CEEEEEEESCCCT-----T--CCTTSEEEEEEEECSS--S--
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCC--cEEEEEECCCCCc-----c--ccCCCeEEEEEEECCC--C--
Confidence 35789999999999 34 542 357885 78975 4688988865431 2 7789999999998642 1
Q ss_pred eEEEEEeeEEEEccCCCCCC
Q 011197 101 KVELKVNKIVLVGKSDPSYP 120 (491)
Q Consensus 101 ~~el~~~~i~ils~~~~~~P 120 (491)
.+.|++ ||.||+..|-
T Consensus 91 --~F~A~e--VLAKhdekYm 106 (136)
T 1sr3_A 91 --HILAKE--VLAKHDENYT 106 (136)
T ss_dssp --EEEESS--CBCCSCCCCC
T ss_pred --eEEEEE--EEecCCCCCC
Confidence 355655 8899986643
No 101
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=69.66 E-value=22 Score=30.73 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=48.2
Q ss_pred CCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
.=+.|++.|.|... +.|. +.|+|+||. +-+---.+.+ .-... +..|.+|.|.|.+..+.. +-.|+|.
T Consensus 57 ~~s~VWmQG~VV~~-~~g~---~~LdDgTG~--~~v~g~~~vp--~g~p~--l~~G~YVMV~G~v~~~s~---eP~i~Av 123 (150)
T 3mxn_B 57 DLAAVWMQGRVVMA-DRGE---ARLRDPSGD--FSVRGLERVP--RGRPC--LVPGKYVMVMGVVQACSP---EPCLQAV 123 (150)
T ss_dssp ECSEEEEEEEEEEE-ETTE---EEEEETTEE--EEEECGGGSC--CCSCC--CSTTCEEEEEEEEEECSS---SCEEEEE
T ss_pred eeEEEEEEeEEEEe-CCCe---EEEECCCce--EEEeeccccC--CCCcc--cCCCCEEEEEEEEEecCC---CceEEEE
Confidence 34579999999997 4453 579999975 3321111111 00113 889999999999987533 5677777
Q ss_pred eEEEEcc
Q 011197 108 KIVLVGK 114 (491)
Q Consensus 108 ~i~ils~ 114 (491)
++.=||.
T Consensus 124 Km~DLS~ 130 (150)
T 3mxn_B 124 KMTDLSD 130 (150)
T ss_dssp EEEECCS
T ss_pred EeeeCCC
Confidence 7776655
No 102
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=67.96 E-value=35 Score=38.97 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=61.0
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeee--ec--CC-CeEEEEEEcCCCccceEEEEe-CCccchhhhhhcCCCCCcE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RA--QS-SVTFIEVNDGSCLSNMQCVMT-SDAEGYDQVKSGLITTGAS 85 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~--R~--~g-kl~Fi~LrD~~g~~~iQvv~~-~~~~~~~~~~~~~L~~gd~ 85 (491)
++|++|.. ....|+|.|.|-.+ |. .| .+.-+.|.|.++ +|.|..- .+...-+.... |+.|++
T Consensus 8 ~~~~~~~~--------~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~--~~~~k~f~~~~~~~~~~~~--~~~g~~ 75 (1041)
T 3f2b_A 8 RRLETIVE--------EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTN--SILVKMFSRDKEDAELMSG--VKKGMW 75 (1041)
T ss_dssp BCGGGCCS--------CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSC--EEEEEEECSSHHHHHHHHT--CCTTCE
T ss_pred ccHHHhhc--------ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCC--CEEEEEeecccchHHHHhc--CCCCCE
Confidence 45666653 34579999999875 43 34 455668899985 5777543 33222233456 999999
Q ss_pred EEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 86 V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
|.|+|.+....-. +++.+.+.++..+.+.
T Consensus 76 ~~~~g~~~~d~~~-~~~~~~~~~~~~~~~~ 104 (1041)
T 3f2b_A 76 VKVRGSVQNDTFV-RDLVIIANDLNEIAAN 104 (1041)
T ss_dssp EEEEEEEEEETTT-TEEEEEEEEEEEECCC
T ss_pred EEEEEEEEeccCC-cceEEEeeeeEEeccc
Confidence 9999999865432 3678888888766653
No 103
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=66.74 E-value=51 Score=26.87 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=46.6
Q ss_pred CCcEEEEEEEEeee---ec-CCCeEEEEE-----E--cCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEe-c
Q 011197 28 VGLMIVVAGWVRTL---RA-QSSVTFIEV-----N--DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP-S 95 (491)
Q Consensus 28 ~~~~V~v~G~V~~~---R~-~gkl~Fi~L-----r--D~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~-~ 95 (491)
.+..|.|.|++.+= |. ..+..|... | +.+ .-|-|++...... ... +..|+-|.|+|.+.. .
T Consensus 10 ~~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~--Dfi~ivvw~klAe---~~~--~~kG~~v~v~G~lrsy~ 82 (107)
T 4gs3_A 10 ENNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETK--DYLPITISNRLFE---GMN--LEVGTRVKIEGQLRSYN 82 (107)
T ss_dssp CCSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCE--EEEEEEEEGGGST---TCC--CCTTCEEEEEEEEEEEE
T ss_pred hCCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCC--cEEEEEEEhHHhh---HHh--hcCCCEEEEEEEEEecc
Confidence 34568999999762 33 122233222 1 222 3466777654321 123 679999999999964 2
Q ss_pred ----CCC--ceeEEEEEeeEEEEc
Q 011197 96 ----QGS--KQKVELKVNKIVLVG 113 (491)
Q Consensus 96 ----~~~--~~~~el~~~~i~ils 113 (491)
+.+ ..-+||.|.+++.|.
T Consensus 83 ~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 83 RKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp CC--------EEEEEEEEEEEEEC
T ss_pred eEECCCCCEEEEEEEEEEEEEEcc
Confidence 112 125899999999885
No 104
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=66.56 E-value=13 Score=30.13 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=32.7
Q ss_pred eEEEEeCCccchhh-hhhcCCCCCcEEEEEEEEEecC--CCceeEEEEEeeEEEEcc
Q 011197 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ--GSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~v~~~~--~~~~~~el~~~~i~ils~ 114 (491)
++|++-.... +. .+. |+.|+-|.|+|.+.... .+....+|++++++.|+.
T Consensus 50 ~~vv~~g~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN--QAITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT--HHHHTT--CCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHH--HHHHhh--CCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 7777775532 12 234 99999999999998762 222248999999998864
No 105
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=66.14 E-value=39 Score=29.17 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeec-------------------CCCeEEEEEEcCCCccceEEEEeCCccch
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGY 72 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~-------------------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~ 72 (491)
++|+||... ...|.|.|+|..+-. .++++=+.|-|.||. |-+.+..+.
T Consensus 17 ~kI~dL~pg--------~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~--- 83 (145)
T 1wjj_A 17 VKVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ--- 83 (145)
T ss_dssp CCSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH---
T ss_pred eEHHHcCCC--------CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCC---
Confidence 567777643 234788888876521 235677788899864 777776542
Q ss_pred hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 73 DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 73 ~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
+.. |..||+|.+.+-...--. +.++|.+.+..-+.+.
T Consensus 84 --~~~--l~~Gd~v~i~na~v~~~~--G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 84 --VDL--MKPGATVILRNSRIDMFK--GTMRLGVDKWGRIEAT 120 (145)
T ss_dssp --HHH--TCTTCEEEEEEEEEEEET--TEEEEEECTTCCBCCC
T ss_pred --cCc--CCCCCEEEEeccEEEeEC--CEEEEEECCCEEEEEC
Confidence 345 899999999986554433 3689998765544443
No 106
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=61.95 E-value=45 Score=25.17 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=33.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
.+.|.|.++...| +|++|.++ +..++..+......... ++.||.|.|.
T Consensus 8 iv~G~V~~v~~~G--~fV~l~~~-----~~Gllh~sel~~~~~~~--~~~Gd~V~v~ 55 (80)
T 2k52_A 8 FYKGVVTRIEKYG--AFINLNEQ-----VRGLLRPRDMISLRLEN--LNVGDEIIVQ 55 (80)
T ss_dssp EEEEEEEEEETTE--EEEEEETT-----EEEEECGGGCSSCCGGG--CCTTCEEEEE
T ss_pred EEEEEEEEEeCCE--EEEEECCC-----CEEEEEHHHCCccccee--eCCCCEEEEE
Confidence 4789999998877 89999754 56777655321111235 9999999876
No 107
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=60.36 E-value=10 Score=39.05 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=62.1
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
-++|++|... ....+|.|||.++ |. .|++.-++|.|.+| .|++.+..+.. +.+. ..|.
T Consensus 3 ~~~I~~L~p~--------~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~-~~l~ 69 (444)
T 4gop_C 3 IYPIEGLSPY--------QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAV--DRFY-PLLQ 69 (444)
T ss_dssp CCCSTTCCTT--------CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHH--HHHT-TTCC
T ss_pred ceeHHHCCCC--------CcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHH--HHHH-Hhee
Confidence 3577888653 1347899999853 42 25777889999987 69999987531 1222 2399
Q ss_pred CCcEEEEEEE-EEecCC----CceeEEEEEeeEEEEccCC
Q 011197 82 TGASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 82 ~gd~V~V~G~-v~~~~~----~~~~~el~~~~i~ils~~~ 116 (491)
.|+++.|++. |..... ....+||....-+.+.++.
T Consensus 70 eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 70 ENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp TTCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECS
T ss_pred cCCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEcc
Confidence 9999999974 443322 1346899987666665554
No 108
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=59.55 E-value=2.5 Score=43.88 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.7
Q ss_pred CCccceeccHHHHHHHHcC
Q 011197 454 VPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g 472 (491)
.|..|||+|+|||+.+|-.
T Consensus 333 ~PavGFaig~eRl~~~l~~ 351 (456)
T 3lc0_A 333 IPCAGFGFGDCVIVELLQE 351 (456)
T ss_dssp CCEEEEEEESSHHHHHHHH
T ss_pred CCEEEEEeEHHHHHHHHHh
Confidence 4899999999999998854
No 109
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=59.33 E-value=16 Score=40.62 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCC----CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~ 229 (491)
..+.+|+.|...||.||-|-.+++..- .+..+. +.-.|| .+.+ --.|+
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~--v~l~NP----------------------is~e----~svmR 545 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEA--LLLPSP----------------------ISVE----MSAMR 545 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCC--CBCSSC----------------------SCST----TCEEC
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCe--EEEcCC----------------------Cchh----HHHHH
Confidence 456789999999999999999987421 011111 222222 0111 12466
Q ss_pred cchhhHH-HHHh----ccCC--ceEEEccccccCCCCCCcccccccceeeEecc-------------CCHHHHHHHHHHH
Q 011197 230 VSGQLNA-ETYA----TALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAY 289 (491)
Q Consensus 230 ~Spql~l-ql~~----~g~~--rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~-------------~~~~~lm~~~e~l 289 (491)
+|-=-.+ +.++ .+.. |+||||+||+.++. +..+..|-.+|=+-.+. .|+.++...+|.+
T Consensus 546 tsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~l 624 (795)
T 3pco_B 546 LSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV 624 (795)
T ss_dssp SSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHH
Confidence 6644444 4333 3443 79999999987643 23444566666654443 3788988888887
Q ss_pred HHH
Q 011197 290 LQL 292 (491)
Q Consensus 290 i~~ 292 (491)
+..
T Consensus 625 l~~ 627 (795)
T 3pco_B 625 LDL 627 (795)
T ss_dssp TTT
T ss_pred HHH
Confidence 665
No 110
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=57.74 E-value=24 Score=33.44 Aligned_cols=82 Identities=9% Similarity=0.147 Sum_probs=49.7
Q ss_pred CcEEEEEEEEee---eecC--CC-eEEEEE-EcCC-------CccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEe
Q 011197 29 GLMIVVAGWVRT---LRAQ--SS-VTFIEV-NDGS-------CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (491)
Q Consensus 29 ~~~V~v~G~V~~---~R~~--gk-l~Fi~L-rD~~-------g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~ 94 (491)
-..|.|.|+|.+ +|.. |+ ++-+.| .+.. ...-++|++..... +.+.. |..||-|.|+|.+..
T Consensus 128 ~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~A--e~~~~--l~KG~~V~V~G~l~~ 203 (264)
T 2fxq_A 128 LNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELA--EWASE--LRKGDGLLVIGRLVN 203 (264)
T ss_dssp CEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHH--HHHTT--CCTTCEEEEEEEEEE
T ss_pred eEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHH--HHhhh--cCCCCEEEEEEEEEe
Confidence 357889999988 4542 32 222222 2211 01136776664321 12225 999999999999976
Q ss_pred c----CCCc--eeEEEEEeeEEEEcc
Q 011197 95 S----QGSK--QKVELKVNKIVLVGK 114 (491)
Q Consensus 95 ~----~~~~--~~~el~~~~i~ils~ 114 (491)
. +.+. ..+||.|+++++|..
T Consensus 204 ~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 204 DSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred eEEECCCCCEEEEEEEEEEEEEECcc
Confidence 4 2232 248999999998865
No 111
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=57.65 E-value=36 Score=27.00 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEEEEeeeecC----CCeEEEE-EEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 25 LDRVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 25 ~~~~~~~V~v~G~V~~~R~~----gkl~Fi~-LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
.++.|+-|.|+|-|..+|+. |.-.||. .||......-.+.++-..-+-..+.. |..|++..+.|.+..-+.
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvqd 120 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQD 120 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCCS
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeeec
Confidence 35789999999999999873 5666764 57764321111222211111122455 999999999999876544
No 112
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=57.52 E-value=7.9 Score=39.30 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=15.6
Q ss_pred CccceeccHHHHHHHHcC
Q 011197 455 PHAGFGLGFERLVQFATG 472 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g 472 (491)
|.-|||||+|||+..+..
T Consensus 301 pa~Gf~igieRl~~~l~e 318 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEA 318 (421)
T ss_pred CeEEEeecHHHHHHHHHh
Confidence 567899999999998875
No 113
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=57.10 E-value=44 Score=28.40 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=36.6
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC--CceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG--SKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~--~~~~~el~~~~i~ils~~ 115 (491)
++||+....... ..+. |+.|+-|.|+|.+..... +...+.+++++++.|+..
T Consensus 67 i~vv~wGk~AE~-~~~y--l~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQA-ITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGG-GGTT--CCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHH-HHHh--cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 788887653211 1234 999999999999987532 334577899999999653
No 114
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=57.01 E-value=4.5 Score=40.25 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=32.5
Q ss_pred EEEEEEeCCee-EeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011197 403 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 403 ~~fdl~~~G~g-Ei~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~ 471 (491)
--|+++.+|.| -|++|+ ||+.+.+.+ | . ..|..||+||+|||++++.
T Consensus 288 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g-~--------------~~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 288 LMFKAYSSAANQPILSGG----RYDQLLSNF---Q-E--------------EAFAIGFCCHMDTILKALE 335 (344)
T ss_dssp EEEEEEETTEEEEEEEEE----ECHHHHHTS---S-S--------------CCCCEEEEEEHHHHHHHHH
T ss_pred eEEEEEECCCCCeEeeCc----cHHHHHHHh---C-C--------------CCCeEEEEEEHHHHHHHHH
Confidence 45999988654 677776 444444332 2 1 2479999999999998874
No 115
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=55.30 E-value=26 Score=28.34 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=31.0
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEE
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (491)
|+||+..+.. +.+.. +..|+-|.|+|.+.........+-++++.++
T Consensus 50 i~vv~wGk~A--E~~~~--~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMA--SVLDR--IAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHH--HHHTT--SCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHH--HHHhh--cCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 7888876432 23445 8999999999999976554446777777664
No 116
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=54.60 E-value=4.7 Score=41.85 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=32.3
Q ss_pred EEEEEEeCCe---eEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCC-CCccceeccHHHHHHHHcC
Q 011197 403 AAMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-VPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 403 ~~fdl~~~G~---gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~-pp~~G~glGidRL~m~l~g 472 (491)
--|+.+.+|. |-|++|+.- +.+.++| . |. .|..|||||+|||+.+|..
T Consensus 309 ~vFe~~~~~~~~~~~i~~GGRY----D~L~~~f-----------------~-g~~~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 309 TVYETTLIGHEALGSICSGGRY----EELVGTF-----------------I-GEKMPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp EEEEEEETTCGGGCCSSEEEEE----SSSSGGG-----------------T-CSCCCEEEEEEEHHHHHHHHHH
T ss_pred eEEEEEECCCCccceecccccH----HHHhhhh-----------------c-CCCCceeeeeccHHHHHHHHHH
Confidence 3599999874 567777632 2222111 2 32 5899999999999998864
No 117
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=51.31 E-value=68 Score=26.70 Aligned_cols=61 Identities=8% Similarity=0.189 Sum_probs=43.1
Q ss_pred EEEEcCCCccceEE-EEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 50 IEVNDGSCLSNMQC-VMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 50 i~LrD~~g~~~iQv-v~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
+.|+||. ..+|. ++..+.. ..+.+|.|+.|++|.+.=....+-.. +.--|.+.+++|+..+
T Consensus 47 l~lSDG~--~~~~~~mLatqln--~~v~~g~l~~~sIirl~~y~~~~v~~-~k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGL--NTLSSFMLATQLN--PLVEEEQLSSNCVCQIHRFIVNTLKD-GRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSS--EEEEEEEECGGGH--HHHHTTSSCTTCEEEEEEEEEEECSS-SCEEEEEEEEEEEECS
T ss_pred EEEECcc--hheeeehhHHHHH--HHHhcCCccCCCEEEEEEEEEEEecC-CcEEEEEEeeEEeecc
Confidence 6799998 56998 8875532 22455679999999998765543320 2467788899999773
No 118
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=50.88 E-value=7.7 Score=36.85 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=41.9
Q ss_pred CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011197 400 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 478 (491)
Q Consensus 400 ~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Ird 478 (491)
...-.+|+.++|| ||.-= + | |.. .|++ --|.++=+--|+|||.|.+-|.+||-|
T Consensus 134 AwGLGWEVWldGM-EITQF----T-Y------FQQvGGi~-------------c~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 134 AWGVGWEVWLDGM-EITQF----T-Y------FQQIGGIS-------------LKDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp EEEEEEEEEETTE-EEEEE----E-E------EEEBTTBC-------------CSSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred cccccceeeEcce-eeehh----h-h------hhhcCCcc-------------cCccceeecccHHHHHHHHhCCCceec
Confidence 3567899999999 98631 0 0 001 1333 137788899999999999999999999
Q ss_pred ccc
Q 011197 479 AIP 481 (491)
Q Consensus 479 vi~ 481 (491)
+..
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 875
No 119
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=50.47 E-value=62 Score=29.31 Aligned_cols=82 Identities=13% Similarity=0.274 Sum_probs=46.5
Q ss_pred cEEEEEEEEee---eecC--CC-eEEEEE-E-----cC-CC-----ccceEEEEeCC-ccchhh-hhhcCCCCCcEEEEE
Q 011197 30 LMIVVAGWVRT---LRAQ--SS-VTFIEV-N-----DG-SC-----LSNMQCVMTSD-AEGYDQ-VKSGLITTGASIWIQ 89 (491)
Q Consensus 30 ~~V~v~G~V~~---~R~~--gk-l~Fi~L-r-----D~-~g-----~~~iQvv~~~~-~~~~~~-~~~~~L~~gd~V~V~ 89 (491)
..|+|.|+|.+ +|.. |+ ++-+.| . |. +| ..-+.|++-.+ .. +. .+. |+.|+.|.|+
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lA--e~~~~y--L~KGs~V~Ve 102 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLV--KVVEQY--LKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHH--HHHHHH--CCTTCEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHH--HHHHhh--cCCCCEEEEE
Confidence 56889999987 5542 32 222222 1 11 11 01266666542 11 11 245 9999999999
Q ss_pred EEEEec----CCCc--eeEEEEEe----eEEEEccC
Q 011197 90 GNVVPS----QGSK--QKVELKVN----KIVLVGKS 115 (491)
Q Consensus 90 G~v~~~----~~~~--~~~el~~~----~i~ils~~ 115 (491)
|.+... +.+. ..+||.|+ +|++|...
T Consensus 103 GrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 103 GQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 999754 2222 35789988 57888653
No 120
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=50.45 E-value=23 Score=29.01 Aligned_cols=51 Identities=8% Similarity=0.221 Sum_probs=33.8
Q ss_pred eEEEEeCCccchhh-hhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
++|++-.... +. .+. |..||.|.|+|.+.... .+ ...+||.|+++++|...
T Consensus 52 ~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTA--ENTALY--CQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHH--HHHHHh--CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 6666654321 11 245 99999999999998542 22 13589999999999764
No 121
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=50.07 E-value=8.4 Score=36.79 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=42.8
Q ss_pred CceEEEEEEeCCeeEeech--hhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcc
Q 011197 400 RTVAAMDMLVPRIGELIGG--SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 477 (491)
Q Consensus 400 ~~~~~fdl~~~G~gEi~~G--~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Ir 477 (491)
...-.+|+.++|| ||.-= +|+. .|++ --|.++=+--|+|||.|.+-|.+||-
T Consensus 146 AWGLGWEVWldGM-EVTQFTYFQQv------------GGi~-------------c~pv~~EITYGLERlamylQ~vd~vy 199 (311)
T 3rf1_A 146 AWGLGWEVWLDGM-EVTQFTYFQQV------------GGIA-------------VDLVSAEITYGLERIAMYLQNVDNVY 199 (311)
T ss_dssp EEEEEEEEEETTE-EEEEEEEEEEE------------TTEE-------------CSSCCEEEEEEHHHHHHHHTTCSSGG
T ss_pred ccccceEEEEcCe-eEeeeeeeeee------------CCcc-------------ccccceeeehhHHHHHHHHhCCCeee
Confidence 3567899999999 98631 1111 1222 13777889999999999999999999
Q ss_pred cccccC
Q 011197 478 DAIPFP 483 (491)
Q Consensus 478 dvi~FP 483 (491)
|+++=.
T Consensus 200 Dl~w~~ 205 (311)
T 3rf1_A 200 DIVWSE 205 (311)
T ss_dssp GSEEEE
T ss_pred eccccC
Confidence 987644
No 122
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=46.85 E-value=8.2 Score=38.84 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=31.4
Q ss_pred EEEEEEeCCee-EeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHc
Q 011197 403 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 403 ~~fdl~~~G~g-Ei~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~ 471 (491)
--|+.+.+|.| .|++|+. |+.+.+.+ | +..|..||+||+|||+.+|-
T Consensus 317 ~vFe~~~~~~g~~i~~GGR----YD~L~~~f---G---------------~~~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 317 LVFEMFAPGVGAPIAQGGR----YDELLAQF---G---------------AGAPAVGFAFEVERVMAVLE 364 (373)
T ss_dssp EEEEEECTTCSSCSEEEEE----CTTTTGGG---T---------------CCCCCEEEEEEHHHHHHHHH
T ss_pred eEEEEEECCCCCeEeeccc----ccHHHHhh---C---------------CCCCeEEEEEEHHHHHHHHH
Confidence 45999998765 6777763 22222111 1 22589999999999998764
No 123
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=44.54 E-value=1.2e+02 Score=24.12 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=51.4
Q ss_pred CCCcEEEEEEEEee--e-ec--CCCeEEEEEEcC--CCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCc
Q 011197 27 RVGLMIVVAGWVRT--L-RA--QSSVTFIEVNDG--SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (491)
Q Consensus 27 ~~~~~V~v~G~V~~--~-R~--~gkl~Fi~LrD~--~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~ 99 (491)
..++.++|.|-|.. + |. ...+.|. |.|+ .+ .+|.|....-.+. . ++-|.-|-|+|.+... .+
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~~~-~~v~V~Y~GilPD-----l--FrEGqgVV~~G~l~~~-~g- 74 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRFR-LEDKDNTS-KTVWVLYKGAVPD-----T--FKPGVEVIIEGGLAPG-ED- 74 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEEE-EECSSCTT-CEEEEEEESCCCT-----T--CCTTCEEEEEEEECTT-CS-
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEEE-EEcCCCCC-cEEEEEECCCCCc-----c--ccCCCeEEEEEEEeCC-CC-
Confidence 47889999999974 4 54 2357875 7887 12 4688988865432 2 7789999999999541 11
Q ss_pred eeEEEEEeeEEEEccCCC
Q 011197 100 QKVELKVNKIVLVGKSDP 117 (491)
Q Consensus 100 ~~~el~~~~i~ils~~~~ 117 (491)
.+.|++ ||.||+.
T Consensus 75 ---~F~A~e--vLaKh~e 87 (94)
T 2kct_A 75 ---TFKART--LMTKCPL 87 (94)
T ss_dssp ---EEEEEE--EEESSCC
T ss_pred ---EEEEeE--EEEeCCC
Confidence 345554 7888863
No 124
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=44.00 E-value=7.8 Score=39.82 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.7
Q ss_pred CCccceeccHHHHHHHHc
Q 011197 454 VPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~ 471 (491)
-|..|||+|+|||++++.
T Consensus 335 ~pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 335 VPCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHH
Confidence 378899999999998874
No 125
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=43.87 E-value=14 Score=30.05 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=34.5
Q ss_pred CCCCCCCcccceeeccccCCc-cc--CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc--h-hh
Q 011197 1 MGSKVGEFRKKLKIVDVKGGP-NE--GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQ 74 (491)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~-~~--~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~--~-~~ 74 (491)
|||+--.-.....++++.... .. ..-..|. .+.|.|.++...| +|++|-++ +..++..+... + ..
T Consensus 1 ~~~~~~~~~~~~~iKq~~~~p~~~~~~~~~~G~--iv~G~V~~v~~~G--~fV~l~~~-----~~Gll~~sel~~~~~~~ 71 (109)
T 2khj_A 1 MGSSHHHHHHSSGLVPRGSHMFNNWVALNKKGA--IVTGKVTAVDAKG--ATVELADG-----VEGYLRASEASRDRVED 71 (109)
T ss_dssp --------------------CHHHHTTTCCSSS--EEEEEEEEECSSC--EEEECSTT-----CBCCBCTTCCCSSSSSS
T ss_pred CCccccccccccchhhcccCHHHHHhhcCCCCC--EEEEEEEEEECCe--EEEEECCC-----CEEEEEHHHcCcccccC
Confidence 566555555566677765532 11 1123455 4789999998877 89999653 34455544311 1 11
Q ss_pred -hhhcCCCCCcEEEEE
Q 011197 75 -VKSGLITTGASIWIQ 89 (491)
Q Consensus 75 -~~~~~L~~gd~V~V~ 89 (491)
-.. ++.||.|.|.
T Consensus 72 ~~~~--~~vGd~V~v~ 85 (109)
T 2khj_A 72 ATLV--LSVGDEVEAK 85 (109)
T ss_dssp GGGS--CCTTCEEEEE
T ss_pred hhhc--cCCCCEEEEE
Confidence 123 8999999876
No 126
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=42.26 E-value=10 Score=39.36 Aligned_cols=19 Identities=21% Similarity=0.628 Sum_probs=16.5
Q ss_pred CCccceeccHHHHHHHHcC
Q 011197 454 VPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g 472 (491)
.|..||++|+|||+.+|..
T Consensus 327 ~PavGfa~gleRl~~~l~~ 345 (467)
T 4e51_A 327 TAACGWAMGIERILELLKE 345 (467)
T ss_dssp CCEEEEEEEHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHh
Confidence 4777999999999998865
No 127
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=41.57 E-value=51 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=33.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc--h-hhh-hhcCCCCCcEEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQV-KSGLITTGASIWIQ 89 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~--~-~~~-~~~~L~~gd~V~V~ 89 (491)
.+.|.|.++...| +||+|-++ ++.++..+... + ... .. ++.||.|.|.
T Consensus 10 iv~G~V~~i~~~G--~FV~l~~~-----~~Glihisel~~~~~~~~~~~--~~vGd~V~vk 61 (130)
T 2k4k_A 10 VYTGKVTGLQAYG--AFVALDEE-----TQGLVHISEVTHGFVKDINEH--LSVGDEVQVK 61 (130)
T ss_dssp EEEEEEEEEETTE--EEEEEETT-----EEEEEEGGGTSSSCCSCGGGT--CCTTCEEEEE
T ss_pred EEEEEEEEEeCCe--EEEEECCC-----cEEEEEHHHCCcccccCcccc--CCCCCEEEEE
Confidence 5689999998877 99999653 67777754321 1 111 24 9999999876
No 128
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=40.75 E-value=34 Score=29.84 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=34.7
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEec----CCCc--eeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS----QGSK--QKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~----~~~~--~~~el~~~~i~ils~~ 115 (491)
+.|++-..... ...+. |+.|+.|.|+|.+... +.+. ..+||.|++|++|...
T Consensus 58 i~vv~wg~~Ae-~~~~~--l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLAE-IVGEY--LRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHHH-HHHHH--CCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHHH-HHHhh--cCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 66777654211 11345 9999999999999754 2222 3589999999999764
No 129
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=40.02 E-value=12 Score=39.24 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.7
Q ss_pred CCccceeccHHHHHHHHc
Q 011197 454 VPHAGFGLGFERLVQFAT 471 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~ 471 (491)
-|..||++|+|||++++-
T Consensus 388 ~pavGfa~gierl~~~le 405 (517)
T 4g85_A 388 VPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHH
Confidence 478899999999998874
No 130
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=39.25 E-value=11 Score=38.42 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCccceeccHHHHHHHHcCC
Q 011197 454 VPHAGFGLGFERLVQFATGV 473 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~ 473 (491)
.|..|||||+|||+.++...
T Consensus 305 ~pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 305 VPAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CCEEEEEEEHHHHHHHHHHT
T ss_pred CCeEEEEEcHHHHHHHHHhc
Confidence 35678999999999988743
No 131
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=39.15 E-value=8.8 Score=39.65 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CC-ccceeccHHHHHHHHcC
Q 011197 454 VP-HAGFGLGFERLVQFATG 472 (491)
Q Consensus 454 pp-~~G~glGidRL~m~l~g 472 (491)
|+ .+|||||+|||+..+..
T Consensus 330 p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 330 PIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred ceEEeeecccHHHHHHHHHH
Confidence 55 66999999999998753
No 132
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=38.09 E-value=43 Score=28.26 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=35.2
Q ss_pred eEEEEeCCccchhh-hhhcCCCCCcEEEEEEEEEec----CCCc--eeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPS----QGSK--QKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~v~~~----~~~~--~~~el~~~~i~ils~~ 115 (491)
+.|++-.... +. .+. |+.||.|.|+|.+... +.+. ..+||.|++|++|...
T Consensus 51 ~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTA--EIANQY--LSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHH--HHHHHh--CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 6676654321 12 245 9999999999999764 2222 2489999999998653
No 133
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=37.29 E-value=47 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=33.9
Q ss_pred eEEEEeCCccchhh-hhhcCCCCCcEEEEEEEEEecC----CC--ceeEEEEEeeEEEEccC
Q 011197 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (491)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~v~~~~----~~--~~~~el~~~~i~ils~~ 115 (491)
+.|++-.... +. .+. |+.|+-|.|+|.+.... .+ ...+||.|++|.+|...
T Consensus 65 ~~v~~wg~~A--e~~~~~--l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLA--EFARTY--LTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHH--HHHHhh--CCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 6666654321 11 345 99999999999998643 12 22589999999999754
No 134
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=36.69 E-value=12 Score=38.00 Aligned_cols=18 Identities=44% Similarity=0.909 Sum_probs=15.3
Q ss_pred CccceeccHHHHHHHHcC
Q 011197 455 PHAGFGLGFERLVQFATG 472 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g 472 (491)
|..|||||+|||+..+..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 556899999999998864
No 135
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=36.16 E-value=31 Score=29.01 Aligned_cols=36 Identities=14% Similarity=0.442 Sum_probs=26.8
Q ss_pred CCCCcEEEEEEEEEecC----CCc--eeEEEEEeeEEEEccC
Q 011197 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~----~~~--~~~el~~~~i~ils~~ 115 (491)
|..|+.|.|+|.+.... .+. ..+||.|++|++|++.
T Consensus 86 l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 86 VKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp CCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999999999998642 221 2589999999998764
No 136
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=34.24 E-value=64 Score=26.23 Aligned_cols=51 Identities=18% Similarity=0.392 Sum_probs=35.2
Q ss_pred CCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchh----h-hhhcCCCCCcEEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----Q-VKSGLITTGASIWIQ 89 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~----~-~~~~~L~~gd~V~V~ 89 (491)
.|+ .+.|.|.++...| +|++|.++ +..++..+...+. . -.. ++.||.|.|.
T Consensus 30 ~G~--~~~G~V~~v~~~G--~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~--~~vGd~V~vk 85 (115)
T 2khi_A 30 EGT--KLTGRVTNLTDYG--CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKV--VNVGDVVEVM 85 (115)
T ss_dssp SSC--EEEEEEEEEETTE--EEEECSTT-----CEEEEETTSSSCSSTTCSSTTT--CCTTCEEEEE
T ss_pred CCC--EEEEEEEEEECCE--EEEEECCC-----CEEEEEHHHCCccccccCcccE--ECCCCEEEEE
Confidence 455 4889999999877 89998543 5777776543221 1 123 8899999887
No 137
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=34.14 E-value=16 Score=37.60 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCceEEEccccccC-------C-CCCCcccccccceeeEeccCCH--HHHHHHHHHHHHH
Q 011197 243 LSNVYTFGPTFRAE-------N-SNTSRHLAEFWMIEPELAFADL--KDDMACATAYLQL 292 (491)
Q Consensus 243 ~~rvfeI~~~FR~E-------~-~~t~rHl~EFtmlE~e~~~~~~--~~lm~~~e~li~~ 292 (491)
..|+-..-+|.|+. + ..|.||..=|.||=- .+|.|| ++.+..+=+|+..
T Consensus 59 ~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT~ 117 (465)
T 1yfs_A 59 YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVTE 117 (465)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHHH
T ss_pred CCceeccccccccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHHh
Confidence 47888899999942 1 247899999988854 577774 5566555554443
No 138
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=34.13 E-value=8.9 Score=42.11 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCceEEEEEEeCCeeEeechh-hhcccHHHHHHHHHHcC-CC--cccHHHHHHHHhcCCC-CccceeccHHHHHHHHcCC
Q 011197 399 GRTVAAMDMLVPRIGELIGGS-QREERLEYLEGRLDELK-LN--RDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGV 473 (491)
Q Consensus 399 ~~~~~~fdl~~~G~gEi~~G~-~r~~~~~~~~~~~~~~g-~~--~~~~~~yl~~~~~G~p-p~~G~glGidRL~m~l~g~ 473 (491)
++..-|.|+++.|+ ||.|=- .+-++- ..| +. ... |. -+| ++---|+|+|||+|++-|.
T Consensus 195 Gp~Gpc~Ei~~dg~-EiwnlVfmq~~r~--------~~g~~~~~~~~---y~-----~l~~~~iDtG~GlER~~~~lqg~ 257 (739)
T 2ztg_A 195 GNAGPCLEAIVGGL-EVATLVFMNLEEH--------PEGDIEIKGAR---YR-----KMDNYIVDTGYGLERFVWASKGT 257 (739)
T ss_dssp TEEEEEEEEEETTE-EEEEEEEEEEEEC--------TTCCEEETTEE---EE-----EEEEEEEEEEEEHHHHHHHHHCC
T ss_pred CCCCCeeEEEECCE-EeeeeeeEEeeec--------CCCceeecCcc---cc-----CCCCCeEecCcCHHHHHHHHcCC
Confidence 34567899999998 998862 221110 011 10 000 00 123 7788999999999999999
Q ss_pred CCcccccccC
Q 011197 474 ENIRDAIPFP 483 (491)
Q Consensus 474 ~~Irdvi~FP 483 (491)
+|+=|+ +|+
T Consensus 258 ~s~yd~-~f~ 266 (739)
T 2ztg_A 258 PTVYDA-IFP 266 (739)
T ss_dssp SSHHHH-HCH
T ss_pred CchHHh-hHH
Confidence 999998 554
No 139
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=33.60 E-value=12 Score=39.69 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.4
Q ss_pred CCc-cceeccHHHHHHHHcC
Q 011197 454 VPH-AGFGLGFERLVQFATG 472 (491)
Q Consensus 454 pp~-~G~glGidRL~m~l~g 472 (491)
+|+ +|||||+|||+.+|..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 565 4899999999988753
No 140
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=32.32 E-value=54 Score=36.27 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=42.2
Q ss_pred CCcEEEEEEEEeeeec--C--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCC--CcEEEEEEEEEec
Q 011197 28 VGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT--GASIWIQGNVVPS 95 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~--~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~--gd~V~V~G~v~~~ 95 (491)
.|..|+|.|.|.+... . ++..=+.+.|++| .++++.-... | ..+. ++. |+.+.|.|++...
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~f~~~--~-~~~~--~~~~~g~~~~~~G~~~~~ 230 (780)
T 1gm5_A 164 PGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLV--HVPLKWFNQD--Y-LQTY--LKQLTGKEVFVTGTVKSN 230 (780)
T ss_dssp SSCCCEEEECCCCCEEEECSSCEEEEEEECCSSC--CEEEEECSCC--T-THHH--HHTTCSSCEEEEEEECSC
T ss_pred CCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCc--eEEEEEECcH--H-HHhh--CccCCCCEEEEEEEEEEc
Confidence 4778999999987632 2 2344466789986 4898776532 2 1234 667 9999999999763
No 141
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=31.21 E-value=69 Score=26.45 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=32.9
Q ss_pred eEEEEeC-CccchhhhhhcCCCCCcEEEEEEEEEec----C--CC--ceeEEEEEe----eEEEEcc
Q 011197 61 MQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPS----Q--GS--KQKVELKVN----KIVLVGK 114 (491)
Q Consensus 61 iQvv~~~-~~~~~~~~~~~~L~~gd~V~V~G~v~~~----~--~~--~~~~el~~~----~i~ils~ 114 (491)
+.|++-. ..... ..+. |+.||.|.|+|.+... + .+ ...+||.|+ ++++|+.
T Consensus 56 ~~v~~wg~~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 56 HRIVVYDQNIVDL-IDKY--LRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEECCHHHHHH-HHHH--CCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEchHHHH-HHhh--cCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 6676665 22111 1345 9999999999999743 2 22 235899997 8888865
No 142
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=31.03 E-value=87 Score=27.70 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhh--hcCCCCCcEEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK--SGLITTGASIWIQ 89 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~--~~~L~~gd~V~V~ 89 (491)
.|. .+.|.|.++...| +|++|-+..+ +..++.-+......+. ...++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~i~~fG--aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDD--IVMVNVQQIAEMG--AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCC--EEEEEEEEEecce--EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 454 5789999999888 8999943332 6777776543221111 1127888888776
No 143
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=30.32 E-value=13 Score=37.58 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.7
Q ss_pred CccceeccHHHHHHHHc
Q 011197 455 PHAGFGLGFERLVQFAT 471 (491)
Q Consensus 455 p~~G~glGidRL~m~l~ 471 (491)
|.-|||+|+|||+..+-
T Consensus 302 P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 302 TGIGFALSIERLLLALE 318 (420)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHH
Confidence 55799999999999873
No 144
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.08 E-value=1.2e+02 Score=24.03 Aligned_cols=54 Identities=9% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-c-h---hhhhhcCCCCCcEEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-G-Y---DQVKSGLITTGASIWIQ 89 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~-~---~~~~~~~L~~gd~V~V~ 89 (491)
.|+ .+.|.|.++...| +|++|.+... .+..++..+.. . + ..-.. ++.||.|.|.
T Consensus 12 vG~--i~~G~V~~v~~fG--~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~--~~~Gd~V~Vk 70 (103)
T 2eqs_A 12 IGD--IYNGKVTSIMQFG--CFVQLEGLRK--RWEGLVHISELRREGRVANVADV--VSKGQRVKVK 70 (103)
T ss_dssp TTC--EEEEEEEEECSSC--EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHH--CCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE--EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccE--eCCCCEEEEE
Confidence 454 5789999999888 8999976210 25677765432 1 1 11234 8899999887
No 145
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=28.73 E-value=15 Score=40.38 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.4
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
||---|+|+|||++++-|.+|.=|+ +|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 5667899999999999999999888 653
No 146
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=28.31 E-value=90 Score=27.83 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchh---hhhhcCCCCCcEEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---QVKSGLITTGASIWIQ 89 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~---~~~~~~L~~gd~V~V~ 89 (491)
.|+ .+.|.|.++...| +|++|.+..+ +..++.-+..... ... ..++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~I~~fG--aFV~L~e~~g---~eGLvhiSels~~~v~~~~-~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VED--VVMVNVRSIAEMG--AYVSLLEYNN---IEGMILLSELSRRRIRSIN-KLIRIGRNECVV 71 (182)
T ss_dssp TTC--EEEEEEEEECSSE--EEEEETTTTT---EEEEEEGGGC-------------CTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE--EEEEEccCCC---cEEEEEHHHCCCcccCCHH-HhcCCCCEEEEE
Confidence 454 5789999999888 8999964432 7777776542211 111 127888888776
No 147
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=27.61 E-value=1e+02 Score=27.18 Aligned_cols=84 Identities=10% Similarity=0.208 Sum_probs=47.9
Q ss_pred CcEEEEEEEEee---eecC--CC-eEEEEE-EcC------CC-----ccceEEEEeCC-ccchhhhhhcCCCCCcEEEEE
Q 011197 29 GLMIVVAGWVRT---LRAQ--SS-VTFIEV-NDG------SC-----LSNMQCVMTSD-AEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 29 ~~~V~v~G~V~~---~R~~--gk-l~Fi~L-rD~------~g-----~~~iQvv~~~~-~~~~~~~~~~~L~~gd~V~V~ 89 (491)
-..|+|.|+|-+ +|.. |+ ++-+.| .+. +| ..-+.|++-.. .... ..+. |+.|+.|.|+
T Consensus 23 mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~-~~~~--l~KG~~V~Ve 99 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKI-ALQY--LHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHH-HHHH--CCTTCEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHH-HHHh--CCCCCEEEEE
Confidence 356899999987 4542 32 222222 111 01 12366777654 2111 1345 9999999999
Q ss_pred EEEEecC----CC--ceeEEEEE----eeEEEEccC
Q 011197 90 GNVVPSQ----GS--KQKVELKV----NKIVLVGKS 115 (491)
Q Consensus 90 G~v~~~~----~~--~~~~el~~----~~i~ils~~ 115 (491)
|.+.... .+ ...+||.| .+|++|+..
T Consensus 100 GrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 100 GKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9998642 12 13578887 589998764
No 148
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=27.52 E-value=3.3e+02 Score=24.30 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=47.2
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee----c-CCC---eEEEEEEcCC---CccceEEEEeCCccchhhhhhcCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----A-QSS---VTFIEVNDGS---CLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R----~-~gk---l~Fi~LrD~~---g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
+++++++.. ...++.|.|.|=|...+ . .|+ .+-+.|.|.+ ....|.|.+-.... +.+.. +
T Consensus 30 ~~~r~~l~~-----~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~--e~LP~--V 100 (187)
T 1qzg_A 30 QSIRSSQEL-----QKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQG--NDLPV--I 100 (187)
T ss_dssp ECHHHHTSC-----CSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSS--SCSCC--C
T ss_pred EEHHHHHhh-----ccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCCh--hhCCC--C
Confidence 455555533 34688899999997753 2 344 5567788977 11246665533211 12333 5
Q ss_pred -CCCcEEEEEEEEEecCC
Q 011197 81 -TTGASIWIQGNVVPSQG 97 (491)
Q Consensus 81 -~~gd~V~V~G~v~~~~~ 97 (491)
..||+|.+...-...-.
T Consensus 101 ~~~GDIIlL~rvkiq~~~ 118 (187)
T 1qzg_A 101 KQVGQPLLLHQITLRSYR 118 (187)
T ss_dssp CSTTCEEEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEEEEC
Confidence 78999999997766543
No 149
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.35 E-value=48 Score=27.31 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=33.5
Q ss_pred CCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc---hhh-hhhcCCCCCcEEEEE
Q 011197 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ-VKSGLITTGASIWIQ 89 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~---~~~-~~~~~L~~gd~V~V~ 89 (491)
.|+ .+.|.|.++...| +||+| ++.+ +..++..+... ++. -.. ++.||.|.|.
T Consensus 22 vG~--iv~G~V~~I~~fG--aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~--~~~Gd~V~Vk 77 (119)
T 2cqo_A 22 LYT--IFQGEVAMVTDYG--AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEI--VDVGDKVWVK 77 (119)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHH--CCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCce--EEEEE-CCCc---EEEEEEHHHCCcccccChhhc--CCCCCEEEEE
Confidence 454 5789999999877 89999 4421 34556533211 111 234 8999999876
No 150
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.02 E-value=1.5e+02 Score=24.08 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=37.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc-cchh---hhhhcCCCCCcEEEEEEEEEecCCCceeEEEE
Q 011197 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYD---QVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (491)
Q Consensus 33 ~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~-~~~~---~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~ 105 (491)
.+.|.|.++...| +|++|-.+ + +..++..+. ..|. ... ..++.||.|.|. +..-....+.+.+.
T Consensus 24 i~~G~V~~v~~fG--~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~-~~~~~Gd~V~vk--V~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 24 LLTGTVSSLEDHG--YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKG-AKLKVGQYLNCI--VEKVKGNGGVVSLS 91 (119)
T ss_dssp EEEEEEEEECSSE--EEEECCCS-S---CEEEEEHHHHHHHHHHHSSS-CCCCTTCEEEEE--EEECCTTSCEEEEE
T ss_pred EEEEEEEEEeCce--EEEEECCC-C---eEEEEEEecccccccccCcc-CEeCCCCEEEEE--EEEEeCCCCEEEEE
Confidence 5789999999888 89999622 1 445554433 1221 111 139999999886 44433222345444
No 151
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=25.36 E-value=1.1e+02 Score=24.85 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=44.0
Q ss_pred cEEEEEEEEee---eecC--CCeEEE--EE-Ec------CCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEec
Q 011197 30 LMIVVAGWVRT---LRAQ--SSVTFI--EV-ND------GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (491)
Q Consensus 30 ~~V~v~G~V~~---~R~~--gkl~Fi--~L-rD------~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~ 95 (491)
..|.+.|+|.+ +|.. |+.... .| .+ .+. -+.|++-.+.... ..+. |..||-|.|+|.+...
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~--fi~vv~wgk~AE~-~~~y--l~KG~~V~VeGrL~~r 86 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPA--RLKVVGWGAVAQE-LQDR--CRLNDEVVLEGRLRIN 86 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCE--EEEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcE--EEEEEEEhHHHHH-HHHh--CCCCCEEEEEEEEEee
Confidence 45888888876 3532 312222 22 11 222 3777776543211 1245 9999999999999854
Q ss_pred C----CC--ceeEEEEEeeEE
Q 011197 96 Q----GS--KQKVELKVNKIV 110 (491)
Q Consensus 96 ~----~~--~~~~el~~~~i~ 110 (491)
. .+ ....||.|+++.
T Consensus 87 ~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 87 SLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp C--------CCEEEEEEEEEE
T ss_pred eEECCCCCEEEEEEEEEEEEE
Confidence 2 11 235888888764
No 152
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=22.64 E-value=2.6e+02 Score=21.37 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=35.3
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCC-ccc---hhhhhhcCCCCCcEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEG---YDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~-~~~---~~~~~~~~L~~gd~V~V~ 89 (491)
..|+ .+.|.|. +...| +|++|.+..+ +...+.-+ ... +..... .+ .||.|.|.
T Consensus 10 ~vG~--~~~G~V~-v~~fG--~FVel~~~~~---~eGLvhis~el~~~~~~~~~~-~~-~Gd~V~Vk 66 (88)
T 1luz_A 10 NAGD--VIKGRVY-EKDYA--LYIYLFDYPH---FEAILAESVKMHMDRYVEYRD-KL-VGKTVKVK 66 (88)
T ss_dssp CTTC--EEEEEEE-EETTE--EEEEETTCTT---SEEEEGGGSSCCHHHHHHHHH-HH-TTCEEEEE
T ss_pred CCCC--EEEEEEE-EEccE--EEEEECCCCC---eEEEEEeeHHhCcccccCHhH-Ee-CCCEEEEE
Confidence 3455 5789999 99888 8999965222 67778766 432 222222 16 99999887
No 153
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=22.60 E-value=1.5e+02 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCCcEEEEEEEEEecCCC--------ceeEEEEEeeEEEEcc
Q 011197 80 ITTGASIWIQGNVVPSQGS--------KQKVELKVNKIVLVGK 114 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~--------~~~~el~~~~i~ils~ 114 (491)
+++||-|.|+|.+...+.. .-..-|.|.+|+.+++
T Consensus 225 ~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 225 ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp SCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred ccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 8999999999999764421 1145566677776654
No 154
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=21.93 E-value=85 Score=26.77 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=34.6
Q ss_pred ceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC----CCc--eeEEE---EEeeEEEEccC
Q 011197 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVEL---KVNKIVLVGKS 115 (491)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~----~~~--~~~el---~~~~i~ils~~ 115 (491)
-+.|++-...... ..+. |+.||.|.|+|.+.... .+. ..+|| .+++|.+|...
T Consensus 54 ~~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 54 WHRVVLFGKLAEV-ASEY--LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred EEEEEEehHHHHH-HHHh--cCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 3777776542111 1345 99999999999997642 222 24678 77888888653
Done!