RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011197
(491 letters)
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 643 bits (1660), Expect = 0.0
Identities = 153/487 (31%), Positives = 233/487 (47%), Gaps = 62/487 (12%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F + +F+K A+L+ S QL E L
Sbjct: 173 LFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEK 202
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V++ P+FRAE S T RHL EFW +E E A+ DL D M + V+ L+
Sbjct: 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELV----SYMVQRTLELR 258
Query: 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
K++++ F + E F ++SY +AI++L E WG DL ++
Sbjct: 259 KKEIEMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVNVE----WGDDLGADE 308
Query: 366 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREE 423
ER LTEE F P V YPK IKAFYM+++ +D R V A DML P GE+IGGSQRE+
Sbjct: 309 ERVLTEE-FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQRED 366
Query: 424 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
+ L R+ E ++ Y WYLDLR YGSVPH+GFGLG ERLV + +++IR A FP
Sbjct: 367 DYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFP 426
Query: 484 RTPGSVE 490
RTP +
Sbjct: 427 RTPARLY 433
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 636 bits (1642), Expect = 0.0
Identities = 126/494 (25%), Positives = 208/494 (42%), Gaps = 67/494 (13%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
CEG F + +F +PA+LT S QL E+
Sbjct: 187 QCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216
Query: 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQV 298
+L + ++RAE S T RHLAE+ +E EL F +D + + C +
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLV----CTVI 272
Query: 299 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKW 357
++ + + N ++ + R F +++Y DAI+ + ++
Sbjct: 273 DNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILNKDKPFEY 323
Query: 358 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELI 416
G D+ + ER +T+E GCP+ + +P ++KAFYM + ++D+L+P +GE++
Sbjct: 324 GEDISEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIV 381
Query: 417 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476
GGS R + L G LN D Y+WY R YGS PH G+GLG ERLV + G ++I
Sbjct: 382 GGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHI 441
Query: 477 RDAIPFPRTPGSVE 490
R +PR E
Sbjct: 442 RKVCLYPRYLERCE 455
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 634 bits (1637), Expect = 0.0
Identities = 121/474 (25%), Positives = 210/474 (44%), Gaps = 56/474 (11%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R A+ R+R A A + F G++ ++ P + + EG F +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL------- 173
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
D+F + +FLT S QL ET L +V+ ++RAE
Sbjct: 174 -----------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE 210
Query: 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWI 316
S T RHLAE+ +E E F L D M + C V +L + + I
Sbjct: 211 KSRTRRHLAEYAHVEAECPFITLDDLMEKIEELV----CDTVDRLLADE--EAKKLLEHI 264
Query: 317 EKGIIDRLSTVAERDFVQLSYTDAIELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAF 374
ER F+++ Y DAI+ L + + +F +G D+ ER++T+
Sbjct: 265 NPKF-----QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI- 318
Query: 375 GGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 433
P++++ +P EIKAFYM+++ D ++D+L+P +GE++GGS R + + L
Sbjct: 319 -NKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFK 377
Query: 434 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
++++ Y+WYLD R YG+ PH G+GLG ER + + T +IRD +PR G
Sbjct: 378 NVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVG 431
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 539 bits (1391), Expect = 0.0
Identities = 125/485 (25%), Positives = 208/485 (42%), Gaps = 61/485 (12%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F V +F K AFL S QL E A +
Sbjct: 172 LFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVER 201
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V+ P +RAE S+T HLAEF ++ E+AFAD D M L V+ I +
Sbjct: 202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKIL----HNIVKTIKEEG 257
Query: 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
KE++ N + + +L YT+AIE+L + +G D+ +
Sbjct: 258 KEELKILNYEPPE---------VKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPE 304
Query: 366 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 425
R L EE + D+P + + FY + + ++ L+ + E++ GS R +
Sbjct: 305 LRILNEE-LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKR 363
Query: 426 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
E LE L + L +S+ ++L YG PHAGFG+G RL+ TG++++++ +PFPR
Sbjct: 364 EVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423
Query: 486 PGSVE 490
+
Sbjct: 424 KKRLT 428
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 536 bits (1382), Expect = 0.0
Identities = 129/475 (27%), Positives = 213/475 (44%), Gaps = 60/475 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM------------ 178
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNT 260
+FE+ AFL S QL + A+ L VY P FRAE NT
Sbjct: 179 ------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220
Query: 261 SRHLAEFWMIEPELAF-ADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKG 319
+RHL E W I+ E+AF D ++ M+ + ++ + Y+ ++ +++D N +E+
Sbjct: 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVA-HA---INYVREHNAKELDILNFELEEP 276
Query: 320 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGG 376
+ F ++SY A+E+L K+ WG D+ +E ER L + E
Sbjct: 277 ---------KLPFPRVSYDKALEILGDLGKEIP----WGEDIDTEGERLLGKYMMENENA 323
Query: 377 CPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 435
+ YP E K FY M+ ++ A D+ R E+ G QRE R + L ++ E
Sbjct: 324 PLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEK 382
Query: 436 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
LN +S+ +YL YG PH GFGLG ERL++ + NIR+ I FPR +
Sbjct: 383 GLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 494 bits (1274), Expect = e-174
Identities = 112/488 (22%), Positives = 199/488 (40%), Gaps = 76/488 (15%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+FEK A+L S QL + V
Sbjct: 164 FGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERV 193
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQLYSCMQVRYILDNC 305
Y P +R E +TSRHL E+ ++ E+ F AD +D M A L + L+
Sbjct: 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALL----AEMLEEALNTA 249
Query: 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
+++ +D +L++ +A +L K++ G DL E
Sbjct: 250 GDEIRLLGATWP---------SFPQDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEA 295
Query: 366 ERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 422
ER L E E +G + V+ YP+ ++ FY +DG T + D+L + E+ G QR
Sbjct: 296 ERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRI 353
Query: 423 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482
R E L L ++ +++ YL++ YG PH GF +G ERL Q G+ N+R A F
Sbjct: 354 HRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAF 413
Query: 483 PRTPGSVE 490
PR +
Sbjct: 414 PRDRHRLT 421
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 462 bits (1192), Expect = e-163
Identities = 72/359 (20%), Positives = 127/359 (35%), Gaps = 75/359 (20%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP 194
+ + ++ + FF + GF W+ II+
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPIT--------------- 46
Query: 195 SSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTF 253
+G+ + + LT S L+ + A L ++ P
Sbjct: 47 --------DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 98
Query: 254 RAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDF 311
R E+ + RH EF ++ E+ A ++D M + R + +
Sbjct: 99 RLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVY-GL---FRKAEEWTGREFPK 154
Query: 312 FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE 371
F Y++ +E ++G D ++ E
Sbjct: 155 TK-----------------RFEVFEYSEVLE-------------EFGSDEKASQEM---- 180
Query: 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEG 430
P + + P+E FY R+ D D+++P GE+ G +RE E +
Sbjct: 181 ----EEPFWIINIPRE---FYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVA 231
Query: 431 RLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488
++ + LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 232 KIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 452 bits (1165), Expect = e-156
Identities = 111/514 (21%), Positives = 204/514 (39%), Gaps = 80/514 (15%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223
F + +P + + EG F V +F+
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYFK 223
Query: 224 KPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 224 GKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE 283
Query: 283 -MACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 341
+ + + +++ ++ + V+L+Y + I
Sbjct: 284 VLDTLSELF----VFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGI 336
Query: 342 ELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDD 398
E+L A K+ DL +E+E++L + + + I+ +P EI+ FY +
Sbjct: 337 EMLRAAGKEIG----DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPA 392
Query: 399 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPH 456
+ R E++ G+QR L+ R+ L+ + Y D YG PH
Sbjct: 393 NPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPH 452
Query: 457 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
AG G+G ER+V F ++NIR A FPR P +
Sbjct: 453 AGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 486
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 398 bits (1023), Expect = e-134
Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 51/407 (12%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+++A +F F+ I +P + EG F V
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV-------------------- 285
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFW 268
+F++ A+L S QL + V+ GP FRAENSNT RHL EF
Sbjct: 286 ----------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFE 335
Query: 269 MIEPELAFADLKDD-MACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 327
++ E+ + + + I +++ +
Sbjct: 336 GLDIEMEIVENYHECIDVMEKLF----TFIFDEIPKRFPDELKVIRKQYPF------EDL 385
Query: 328 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDY 384
R F++L+Y +AIE+L + + D + E L E + I+ +
Sbjct: 386 IYRPFLRLTYKEAIEMLRASGETIG----DYDDFTTPQEVKLGELIKAKYNTDFYILDKF 441
Query: 385 PKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 443
P I+ FY M DD + D+ V E+ G+QR E+L R E ++ +
Sbjct: 442 PAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLK 500
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
Y++ +GS PHAG G+G ER+ G+ NIR FPR P +
Sbjct: 501 DYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 6e-08
Identities = 69/476 (14%), Positives = 134/476 (28%), Gaps = 137/476 (28%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSR 197
G+ V L+Y + W++ + ++ + P+
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWT 214
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKP-------------------AF-------LT-- 229
++ I + + + AF LT
Sbjct: 215 SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 230 ---VSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE----PELA------- 275
V+ L+A T + ++ T L ++ P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 276 ---FADLKDDMACATAYLQLYSCMQVRYILDNCKEDMD-------F-----F--NTWIEK 318
A+ D + +C ++ I+++ ++ F F + I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 319 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-HERYLTEEAFGGC 377
++ + + + +D + ++ K K + K + YL +
Sbjct: 390 ILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELK----V 437
Query: 378 PV---------IVSDYPKEIKAFYMRQNDDGRTVAAMDM-LVPRIGELIGGSQREERLE- 426
+ IV Y K F + D +D IG + + ER+
Sbjct: 438 KLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 427 ----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 467
+L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
Score = 31.4 bits (70), Expect = 0.75
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 331 DF----VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 386
DF Q Y D + + A F K D+Q + L++E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVD-NFDCK---DVQDMPKSILSKE-------------- 49
Query: 387 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE-YLEGRLDELKLNRDSYWWY 445
EI M ++ T+ L+ S++EE ++ ++E L R +Y +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLL---------SKQEEMVQKFVEEVL------RINYKFL 94
Query: 446 LD 447
+
Sbjct: 95 MS 96
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 40.5 bits (96), Expect = 0.001
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEGYDQVKSGLITTGASI 86
VG + + GWV R S+ FI++ D + +Q D A+ + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCI 69
Query: 87 WIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLR 138
+ G V + + ++E+ + + ++ ++D P+ V+ E R K +L
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVL-PLDSNHVNTEEARLKYRYLD 128
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R + R + +F ++GF+ I +P++T + EGA
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 74/444 (16%), Positives = 132/444 (29%), Gaps = 134/444 (30%)
Query: 111 LVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-RNALAYATHKFFQENGFIW 169
+P+ P + V + FL + L + G +V L + + + N
Sbjct: 48 FAADDEPTTPAE--LVGK-FLGYVSSLVEPSKV-GQFDQVLNLCLTEFENCYLEGND--- 100
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPS---SREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226
I + + E LI + +R A+ P D K+ L +
Sbjct: 101 IHA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--KKSNSALFRAVGE--GNAQ 155
Query: 227 FLTV-SGQLNAETYATALSNVY-TFGPTFRAENSNTSRHLAEF----------------- 267
+ + GQ N + Y L ++Y T+ ++ L+E
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 268 --WMIEPELAFADLKDDMACATAYLQLYSC-----MQ-VRYILDNCK-------EDMDFF 312
W+ P D + SC +Q Y++ K E +
Sbjct: 216 LEWLENPSNTPDK--DYLLSIP-----ISCPLIGVIQLAHYVVT-AKLLGFTPGELRSYL 267
Query: 313 N--TWIEKGIIDRLSTVA------ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 364
T +G++ + VA F AI +L F + G
Sbjct: 268 KGATGHSQGLV---TAVAIAETDSWESFFVSVR-KAITVL--------FFI--GVRCY-- 311
Query: 365 HERYLTEEAFGGC---PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR 421
EA+ P I+ D +N++G ML I +
Sbjct: 312 -------EAYPNTSLPPSILEDS---------LENNEG---VPSPMLS------ISNLTQ 346
Query: 422 EERLEYLEGRLDELKLNR---DSYWWYLDL----RHY---GSVPHA--GFGLGFERLVQF 469
E+ ++ ++ K N + L ++ G P + G L + +
Sbjct: 347 EQ----VQDYVN--KTNSHLPAGKQVEISLVNGAKNLVVSGP-PQSLYGLNLTLRK-AKA 398
Query: 470 ATGVENIRDAIPFP-RTP-GSVEF 491
+G++ R IPF R S F
Sbjct: 399 PSGLDQSR--IPFSERKLKFSNRF 420
Score = 42.0 bits (98), Expect = 5e-04
Identities = 41/265 (15%), Positives = 75/265 (28%), Gaps = 103/265 (38%)
Query: 223 EKPAFLTV-----SGQLNAETYATALSNVYTFG-----PTFRAENSNTSRHLAEFWMIEP 272
P LT+ G+ E Y+ + G F+ N +++
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST----------- 1715
Query: 273 ELAFADLKDDMACATAYLQ--LYSCMQVRYILDNCKEDMDFFNTWIEKGIIDR------- 323
F K ++ AT + Q L + F KG+I
Sbjct: 1716 SYTFRSEKGLLS-ATQFTQPAL---TLMEKAA---------FEDLKSKGLIPADATFAGH 1762
Query: 324 -------LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER-YLTEEAFG 375
L+++A+ V +S +E++ R + A
Sbjct: 1763 SLGEYAALASLAD---V-MSIESLVEVV--------------------FYRGMTMQVAVP 1798
Query: 376 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM-----LVPRIGELIG-----------GS 419
+ S+Y M + GR A+ +V R+G+ G
Sbjct: 1799 RDELGRSNYG-------MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 420 Q-----REERLEYLEGRLDELKLNR 439
Q L+ + L+ +KL +
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQK 1876
Score = 41.6 bits (97), Expect = 7e-04
Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 37/156 (23%)
Query: 358 GCDL--QSEHERYLTEEA-------FGGCPV-IVSDYPKEI-------KAFYMRQNDDGR 400
G DL S+ + + A +G + IV + P + K +R+N
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 401 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR----------DSYWWYLDLRH 450
+ + ++ ++ L+ + DL+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 451 YGSVPH----AGFGLGFE--RLVQFATGVENIRDAI 480
G +P AG LG E L A V +I +
Sbjct: 1750 KGLIPADATFAGHSLG-EYAALASLA-DVMSIESLV 1783
Score = 37.7 bits (87), Expect = 0.009
Identities = 46/238 (19%), Positives = 73/238 (30%), Gaps = 86/238 (36%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSG----LITTGAS 85
M+ ++ + + Q V + N S L + V S G V SG L G +
Sbjct: 338 MLSISN-LTQEQVQDYVN--KTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLN 390
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKA--H---LRPR 140
+ ++ PS G Q ++I P + +K + S FL + H L P
Sbjct: 391 LTLRKAKAPS-GLDQ------SRI-------P-FSERKLKFSNRFLPVASPFHSHLLVP- 434
Query: 141 TNTFGAVARVRNALAYATHKFFQENGFIWISS----PIITASDCEGAGEQFCVTTLIPSS 196
A + L +N + + P+ D G V S
Sbjct: 435 -----ASDLINKDLV--------KNNVSFNAKDIQIPVYDTFD----GSDLRV-----LS 472
Query: 197 REAAESPVDAI---PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGP 251
+E VD I P + W E T +++ FGP
Sbjct: 473 GSISERIVDCIIRLP------VKW-----ET-------------TTQFKATHILDFGP 506
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 50.3 bits (121), Expect = 6e-07
Identities = 45/264 (17%), Positives = 77/264 (29%), Gaps = 60/264 (22%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V+ +FR E H EF M+E D+ M L ++ +LD
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL-------LQQVLDCP 162
Query: 306 K-EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQS 363
E + + ++ ID + T E+ K + D L
Sbjct: 163 AAESLSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQ 213
Query: 364 EH-ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGG 418
+ P V +P + +D R+ E G
Sbjct: 214 LLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKG 262
Query: 419 S--------------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 459
Q++ R E L + ++++ ++ G +G
Sbjct: 263 IELANGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGV 317
Query: 460 GLGFERLVQFATGVENIRDAIPFP 483
LG +RLV A G E + + I F
Sbjct: 318 ALGVDRLVMLALGAETLAEVIAFS 341
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 46.0 bits (110), Expect = 2e-05
Identities = 68/280 (24%), Positives = 104/280 (37%), Gaps = 78/280 (27%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
VY G FR E +T RH EF M+E A+AD +D M A ++ +++Y
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGC 359
+ +D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 G----EHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG- 358
Query: 360 DLQSEHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVP 410
++ E F P + +P EI A ++N D P
Sbjct: 359 --------HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------P 397
Query: 411 RIGE----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYW 443
R + I G QR+ E L+ R +DE D
Sbjct: 398 RFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D--- 449
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
+L+ YG P G G+G +RLV T +IRD + FP
Sbjct: 450 -FLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
Score = 30.9 bits (71), Expect = 1.00
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
F + K ++ E L+ + + VAG + T R F + D + +Q
Sbjct: 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVT--GQIQ 87
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D + Y+ K + G + ++G + ++ ++ +KV+ + K+
Sbjct: 88 IYVRQDDVGEQQYELFK--ISDLGDIVGVRGTMFKTK--VGELSIKVSSYEFLTKA 139
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 44.1 bits (105), Expect = 8e-05
Identities = 55/280 (19%), Positives = 83/280 (29%), Gaps = 73/280 (26%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
V+ FR E + RH EF M+E A+ D + M A + ++Y
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGC 359
++D + I + A +D L + K+ +
Sbjct: 334 Q----GRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFL 388
Query: 360 DLQSEHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVP 410
+ L F P + DYP E+ A R++D
Sbjct: 389 NAGIGA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------A 432
Query: 411 RIGE----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYW 443
I E I G Q + +E + D D
Sbjct: 433 GITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D--- 484
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
Y+ YG P G G+G +RLV T IRD + FP
Sbjct: 485 -YIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
Score = 30.2 bits (69), Expect = 1.5
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+F+ D++ E L+ L + +AG + R +F V DGS +Q
Sbjct: 60 DFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQ 117
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+T E YD K G + +G + + K ++ +K ++ L+ K+
Sbjct: 118 FFVTPADVGAETYDAFKK--WDLGDIVAARGVLFRTN--KGELSVKCTQLRLLAKA 169
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 43.3 bits (103), Expect = 2e-04
Identities = 61/275 (22%), Positives = 93/275 (33%), Gaps = 67/275 (24%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
V+ FR E + RH EF M+E +A+AD D + T ++ +V Y
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGC 359
+ DF + + + + + E D L DA + L + WG
Sbjct: 313 G----EHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL 367
Query: 360 DLQSEHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 412
+ E F P +++YP E+ R + + + R
Sbjct: 368 -------GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF 413
Query: 413 GEL-IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 448
E IGG Q E E + + DE D Y+
Sbjct: 414 -EFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTA 463
Query: 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
YG P AG G+G +R++ T IRD I FP
Sbjct: 464 LEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
Score = 27.9 bits (63), Expect = 8.8
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+FR+ + N+ L+ + + + VAG + T R +F+ + D +Q
Sbjct: 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVG--GRIQ 95
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D+ Y+ G I +G + +Q ++ + ++ L+ K+
Sbjct: 96 LYVARDSLPEGVYNDQFKKW-DLGDIIGARGTLFKTQ--TGELSIHCTELRLLTKA 148
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
Score = 34.1 bits (79), Expect = 0.11
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 20/159 (12%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
VY G FR E + H EF E +A+AD D M + + +V Y
Sbjct: 247 VYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTY 305
Query: 301 ILDNCKED---MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 357
D + +DF + +++ L + + + E + V
Sbjct: 306 HPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILD---DICVAK 362
Query: 358 GCDLQSEHER-YLTEEAFGGC-------PVIVSDYPKEI 388
+ L ++ G P + D+P+ +
Sbjct: 363 AVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM 401
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 36.0 bits (83), Expect = 0.021
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL--- 302
++ GP +R E+ HL EF M+ + + + + + + + +
Sbjct: 158 IFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIIT-DFLNHLGIDFKIVGD 215
Query: 303 --DNCKEDMDFFNTWIEKG 319
+ +D + +E
Sbjct: 216 SCMVFGDTLDVMHGDLELS 234
Score = 30.6 bits (69), Expect = 0.92
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 448 LRHYG-SVPHAGFGLGFERLVQFATGVENIRDA 479
R +G P G G G ERL++ +NI+ A
Sbjct: 244 DREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA 276
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 35.3 bits (81), Expect = 0.047
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 448 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 478
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 31.1 bits (70), Expect = 0.96
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 35.0 bits (80), Expect = 0.056
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 448 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 478
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 31.1 bits (70), Expect = 0.94
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 34.6 bits (79), Expect = 0.079
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 448 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 478
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 29.9 bits (67), Expect = 1.9
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 33.8 bits (77), Expect = 0.13
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 448 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 478
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 29.6 bits (66), Expect = 2.5
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 31.4 bits (71), Expect = 0.70
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 458 GFGLGFERLVQFATGVENIRD 478
+GL ER G+ NIR+
Sbjct: 456 AWGLSLERPTMIKYGINNIRE 476
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.84
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 25/55 (45%)
Query: 420 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 474
+++ L+ L+ LKL Y D S P L + AT +E
Sbjct: 18 EKQA-LKKLQAS---LKL-------YAD----DSAP----ALAIK-----AT-ME 47
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 28.0 bits (63), Expect = 0.91
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 345 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 389
+ E+ +KW G D + E+ G ++ + K K
Sbjct: 18 VNKNGINEYYIKWAGYD--WYDNTWEPEQNLFGAEKVLKKWKKRKK 61
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 27.8 bits (62), Expect = 1.8
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 345 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 390
K K E+LV+W G D SE + + E+ C + D+ +
Sbjct: 24 KNKKGKTEYLVRWKGYD--SEDDTWEPEQHLVNCEEYIHDFNRRHTE 68
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 27.3 bits (61), Expect = 1.8
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 348 KKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 389
K + V+W G S+ + + E C ++ ++ K+I
Sbjct: 17 GGKVLYKVRWKGYT--SDDDTWEPEIHLEDCKEVLLEFRKKIA 57
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 27.0 bits (60), Expect = 2.9
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 346 KAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 389
+ + ++W S + + E GC +++++ + +
Sbjct: 21 RNGAVKLYRIRWLNYS--SRSDTWEPPENLSGCSAVLAEWKRRKR 63
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 29.5 bits (67), Expect = 2.9
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 23/84 (27%)
Query: 309 MDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQS 363
+ W+++G+ D RL D + K F + K+ +++
Sbjct: 183 AKY---WLKQGV-DGFRL--------------DGAMHIFPPAQYDKNFTWWEKFRQEIEE 224
Query: 364 EHERYLTEEAFGGCPVIVSDYPKE 387
YL E + + +
Sbjct: 225 VKPVYLVGEVWDISETVAPYFKYG 248
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 29.2 bits (65), Expect = 3.3
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 448 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 478
L Y VP GLG ERL G E++R
Sbjct: 318 LAKYNIDVPVMNLGLGVERLAMIIYGYEDVRA 349
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 28.7 bits (65), Expect = 4.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 454 VPHAGFGLGFE---RLVQFATGVENIRDAI 480
V +GFG R V F +E + +A+
Sbjct: 365 VHGSGFGEYGAGHFRAV-FLPPIEILEEAM 393
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA
complex, distorted double HE hydrolase-DNA complex; HET:
DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Length = 202
Score = 28.3 bits (62), Expect = 5.0
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 371 EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE- 429
F G ++ + PK +K Y + + + + + G +E E
Sbjct: 32 NAVFEGTKYVLYEKPKHLKNLYAQVVLPDDVIKEIFNPLIDLSTTQWGVSPAFAIENTET 91
Query: 430 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 471
++ ++ R W G P AG G ER + T
Sbjct: 92 HKILFGEIKRQDGWV------EGKDPSAGRGNAHERSCKLFT 127
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 28.7 bits (64), Expect = 5.3
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 300 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 358
D KE + +++ I +G+I ++ I K + V +G
Sbjct: 259 LTSDEYKEVIKYYHKLISEGLIP-------AEWATKDDDAYNADQISDGKTAKTGVVFG 310
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 28.3 bits (63), Expect = 6.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 448 LRHYGSVPHAG--FGLGFERLVQFATGVENIRD 478
L Y +P+ GLG ERL G +++R
Sbjct: 314 LAEYD-IPYPVMNLGLGVERLAMILYGYDDVRK 345
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 27.8 bits (63), Expect = 9.6
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 360 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-------AMDMLVPRI 412
+E R + G P SD+ + K F + + +A A++ P +
Sbjct: 320 QEAAEFTRRMK----GEMP---SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLL 372
Query: 413 GELIGGS 419
E +GGS
Sbjct: 373 PEFLGGS 379
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,709,032
Number of extensions: 473587
Number of successful extensions: 1150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 78
Length of query: 491
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 394
Effective length of database: 3,993,456
Effective search space: 1573421664
Effective search space used: 1573421664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)