RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011197
(491 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 210 bits (535), Expect = 5e-65
Identities = 89/351 (25%), Positives = 139/351 (39%), Gaps = 52/351 (14%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------ 56
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRA 255
D+FEK A+L S QL + VY P +R
Sbjct: 57 ------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM 92
Query: 256 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTW 315
E +TSRHL E+ ++ E+ F ++D+ L + + +
Sbjct: 93 EEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS 152
Query: 316 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---E 372
+ D +L++ +A +L K E G DL E ER L E E
Sbjct: 153 FPQ------------DIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKE 195
Query: 373 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 432
+G + V+ YP+ ++ FY +DG T + L+ R E+ G QR R E L L
Sbjct: 196 RWGSDWLFVTRYPRSVRPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESL 253
Query: 433 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FP
Sbjct: 254 KAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 202 bits (515), Expect = 4e-62
Identities = 71/360 (19%), Positives = 117/360 (32%), Gaps = 81/360 (22%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGE------ 55
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-NAETYATALSNVYTFG 250
G+ + + LT S L A L ++
Sbjct: 56 ---------------------GMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94
Query: 251 PTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKED 308
P R E+ + RH EF ++ E+ A ++D M +
Sbjct: 95 PNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLV------------------ 136
Query: 309 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 368
G+ + R+F + + E SE
Sbjct: 137 ---------YGLFRKAEEWTGREFPKTKRFEVFEY-------------------SEVLEE 168
Query: 369 LTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYL 428
+ + + I + + DG +L GE+ G +RE E +
Sbjct: 169 FGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKI 228
Query: 429 EGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
++ + LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 229 VAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 202 bits (513), Expect = 4e-61
Identities = 83/358 (23%), Positives = 140/358 (39%), Gaps = 40/358 (11%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F V
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------ 85
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFR 254
+F+ A+L S Q N + A VY GP FR
Sbjct: 86 ------------------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 121
Query: 255 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNT 314
AENSNT RH+ EF ++ E+AF + ++ + L + +++
Sbjct: 122 AENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELF---VFIFSELPKRFAHEIELVRK 178
Query: 315 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 374
++ + V+L+Y + IE+L A K+ + + + L + +
Sbjct: 179 QYP---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK-LVRDKY 234
Query: 375 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434
I+ +P EI+ FY + + R E++ G+QR L+ R+
Sbjct: 235 DTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKA 294
Query: 435 LKLNRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
L+ + Y D YG PHAG G+G ER+V F ++NIR A FPR P +
Sbjct: 295 HGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 352
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 186 bits (473), Expect = 2e-55
Identities = 78/378 (20%), Positives = 128/378 (33%), Gaps = 68/378 (17%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
EGA + S+ K L S QL +
Sbjct: 63 TPEGARDYLV----------------------------PSRVHKGKFYALPQSPQLFKQL 94
Query: 239 YATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQ 297
+ Y FR E+ R EF I+ E +F A ++
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVR------ 147
Query: 298 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 357
L+ D+ F R + + + ++ W
Sbjct: 148 -HLWLEVKGVDLGDFPVMTFAEAERRYGSDKP----------------DLRDESKWAPLW 190
Query: 358 GCDL---QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE 414
D + + E LT PK++ A ++ + A DM++ E
Sbjct: 191 VIDFPMFEDDGEGGLTAMHH------PFTSPKDMTAAELKAAPENAVANAYDMVING-YE 243
Query: 415 LIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 470
+ GGS R + + L +N R+ + + LD YG+ PHAG G +RL
Sbjct: 244 VGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLL 303
Query: 471 TGVENIRDAIPFPRTPGS 488
TG +NIRD I FP+T +
Sbjct: 304 TGTDNIRDVIAFPKTTAA 321
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 182 bits (463), Expect = 5e-54
Identities = 106/375 (28%), Positives = 164/375 (43%), Gaps = 44/375 (11%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-N 235
A+ EG E F +FE+ AFL S QL
Sbjct: 63 ATATEGGTELFP------------------------------MKYFEEDAFLAESPQLYK 92
Query: 236 AETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295
A+ L VY P FRAE NT+RHL E W I+ E+AF + D ++L+
Sbjct: 93 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE---DEEEVMSFLERLVA 149
Query: 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 355
+ Y+ ++ +++D N +E+ + F ++SY A+E+L K+ +
Sbjct: 150 HAINYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKEIPWGE 200
Query: 356 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL 415
+ + +Y+ E + YP E K FY+ + D+ + L R E+
Sbjct: 201 DIDTEGERLLGKYMMEN-ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEI 259
Query: 416 IGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 475
G QRE R + L ++ E LN +S+ +YL YG PH GFGLG ERL++ + N
Sbjct: 260 SSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPN 319
Query: 476 IRDAIPFPRTPGSVE 490
IR+ I FPR +
Sbjct: 320 IREVILFPRDRRRLT 334
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 178 bits (452), Expect = 3e-52
Identities = 59/356 (16%), Positives = 112/356 (31%), Gaps = 42/356 (11%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-------- 66
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ + +L ++ +L +
Sbjct: 67 --------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM-DFFNTWIEK 318
+ RH EF M+E +A+AD D + + + + + E + DF + +
Sbjct: 107 SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKL 166
Query: 319 GIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGG 376
+ + + E D L DA + L + WG + +E + E
Sbjct: 167 TMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGLGRIVTEIFDEVAEAHL-I 224
Query: 377 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 436
P +++YP E+ R + + + + E+ G E R E
Sbjct: 225 QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQV 283
Query: 437 LNRDS--------YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
+ + Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 284 NAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 169 bits (430), Expect = 6e-49
Identities = 70/383 (18%), Positives = 121/383 (31%), Gaps = 67/383 (17%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229
+ +P +T S EGA + + L
Sbjct: 62 VETPFLTKSTPEGARDFLV----------------------------PYRHEPGLFYALP 93
Query: 230 VSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288
S QL + A L + FR E+ +F ++ E++F +++D +
Sbjct: 94 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNER 152
Query: 289 YLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 348
+ V + + F + Y L +
Sbjct: 153 LMA-----HVFREALGVELPLPFPRLSY--------------EEAMERYGSDKPDLRREG 193
Query: 349 KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 408
+F ++V + E E T S +P++ + + D GR A L
Sbjct: 194 FRFLWVVDFPLLEWDEEEEAWTYM----HHPFTSPHPED---LPLLEKDPGRVRALAYDL 246
Query: 409 VPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFE 464
V E+ GGS R L + + + ++L+ YG+ PH G G +
Sbjct: 247 VLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLD 306
Query: 465 RLVQFATGVENIRDAIPFPRTPG 487
RL+ TG +IR+ I FP+
Sbjct: 307 RLLALMTGSPSIREVIAFPKNKE 329
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 61.0 bits (148), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 56.6 bits (136), Expect = 9e-11
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 52.8 bits (126), Expect = 4e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 40.0 bits (93), Expect = 6e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 37.3 bits (85), Expect = 0.003
Identities = 46/339 (13%), Positives = 88/339 (25%), Gaps = 53/339 (15%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
+ + G+ I PI+ + + E +
Sbjct: 12 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP-----------LFKRAIGEVTDVV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRH 263
+ +D D E A +G + Y ++ GP FR E R+
Sbjct: 61 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHERPQKGRY 119
Query: 264 ---------LAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNT 314
+ + + L A + + + +
Sbjct: 120 RQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALV 179
Query: 315 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 374
+ ++L D + YT+ + +L + + L+ L + E
Sbjct: 180 AFLEQHKEKLD----EDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFA 235
Query: 375 GGCPVIVSDYPKEIKAFYMRQNDD---GRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431
G C ++ S + + D + + G + G GR
Sbjct: 236 GLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAG-----------GR 284
Query: 432 LDELKLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 468
D L + G + P GF +G ERLV
Sbjct: 285 YDGL------------VEQLGGRATPAVGFAMGLERLVL 311
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 31.5 bits (70), Expect = 0.20
Identities = 46/336 (13%), Positives = 84/336 (25%), Gaps = 45/336 (13%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
FG R+ + K + G + + +PI + A +
Sbjct: 12 FGKELRMHQRIVATARKVLEAAGALELVTPIFEETQ-----------VFEKGVGAATDIV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRH 263
+ +D E A + + + ++ GP FRAE R+
Sbjct: 61 RKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRY 120
Query: 264 LAEFWMIEPELAFADLKDDMAC----ATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKG 319
+ L + D +L + + +
Sbjct: 121 RQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLRE 180
Query: 320 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD---LQSEHERYLTEEAFGG 376
++ D + + + +L ++ + L+K L E
Sbjct: 181 VLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 240
Query: 377 CPVIVSDYPKEIKAFYMRQND--DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434
+ P E++ +R D + L GG GR D
Sbjct: 241 RHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGG-----------GRYDG 289
Query: 435 LKLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 468
L G VP GF G ER+
Sbjct: 290 L------------SELLGGPRVPGVGFAFGVERVAL 313
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 28.3 bits (63), Expect = 0.37
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 346 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 396
+ ++LVKW L + + IV P+++K F R+N
Sbjct: 22 DGTSQLQYLVKW-RRLNYDEATWENATD------IVKLAPEQVKHFQNREN 65
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 30.4 bits (67), Expect = 0.43
Identities = 44/339 (12%), Positives = 83/339 (24%), Gaps = 49/339 (14%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
++ + + + I +PI ++D ++ +
Sbjct: 12 LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD-----------LFARGVGDSTDVV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKP-AFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSR 262
+ KD E A + + + +Y GP FR E R
Sbjct: 61 QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR 120
Query: 263 HLAEFWMIE-----PELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317
+ +F E D + Y I
Sbjct: 121 Y-RQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEAL 179
Query: 318 KGIIDRLSTVAERDFVQLSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTE-- 371
+ + D +TD + +L + K+ + + L E + Y +
Sbjct: 180 VKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVK 239
Query: 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431
+ ++ P ++ + + I L GG GR
Sbjct: 240 AYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG-----------GR 288
Query: 432 LDELKLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 468
+ L L S GF L ERL+
Sbjct: 289 YNGL------------LELLDGPSETGIGFALSIERLLL 315
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 27.8 bits (62), Expect = 0.47
Identities = 5/45 (11%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 345 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 389
+ + ++W + S + + E GC +++++ + +
Sbjct: 20 DRNGAVKLYRIRW-LNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 29.8 bits (66), Expect = 0.64
Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 276 FADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 335
F++L+D + + ++ R + + TW ++L A F
Sbjct: 67 FSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAA-TFCS- 124
Query: 336 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHE-RYLTEEAFGGCPV-IVSDYPKEIKAFYM 393
+ A+E++ +KK + D +S R L + + ++ YP +
Sbjct: 125 NQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAK 184
Query: 394 RQNDDG------RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 433
+ ++ + + + ++ ++RLE + RLD
Sbjct: 185 YTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLD 230
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 29.7 bits (66), Expect = 0.72
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 459 FGLGFERLVQFATGVENIRD 478
FGLG ERL G+ +IR
Sbjct: 231 FGLGVERLAMLRYGIPDIRY 250
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 132
Score = 28.4 bits (62), Expect = 1.0
Identities = 11/90 (12%), Positives = 23/90 (25%)
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSRE 198
TN G+ + + A+ N +S + + +
Sbjct: 41 SVTNPDGSGIKGKEAVGAFFDTHIAANRLTVTCEETFPSSSPDEIAHILVLHSEFDGGFT 100
Query: 199 AAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228
+ V K GLI + ++
Sbjct: 101 SEVRGVFTYRVNKAGLITNMRGYWNLDMMT 130
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.7 bits (59), Expect = 1.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 345 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 387
K K E+LV+W SE + + E+ C + D+ +
Sbjct: 17 KNKKGKTEYLVRW-KGYDSEDDTWEPEQHLVNCEEYIHDFNRR 58
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.2 bits (60), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 322 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 356
DR+ V D S+ A+E + KA F+V+
Sbjct: 59 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 93
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 26.8 bits (59), Expect = 2.0
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 322 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 356
D + V + + ++++ VK
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 26.4 bits (58), Expect = 2.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 338 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 377
+ L K+ +EFL+KW D H + T E+ G
Sbjct: 27 EKTVPDLNNCKENYEFLIKW-TDESHLHNTWETYESIGQV 65
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 28.1 bits (62), Expect = 2.3
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 223 EKPAFLT--VSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L 279
E A++ + G + E + L+N+Y A + + PEL D L
Sbjct: 19 ENTAYMKCFLKGIVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKL 78
Query: 280 KDDMA 284
+D+
Sbjct: 79 AEDLT 83
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit
(RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 26.7 bits (59), Expect = 3.7
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
+ + G +R + +++D + + Q V T D + V + + +
Sbjct: 30 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTV----VPPETYVKV 85
Query: 89 QGNVVPSQGSKQKVELKVNKI 109
G++ Q K V K+ +
Sbjct: 86 AGHLRSFQNKKSLVAFKIMPL 106
>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 27.4 bits (60), Expect = 4.0
Identities = 20/111 (18%), Positives = 27/111 (24%), Gaps = 15/111 (13%)
Query: 222 FEKPAFLTVSGQLNAETYATALSNVYTFG-----PTFRAENSNTSRHLAEFWMIEPELAF 276
F KPA + L + +N Y FG P A + T W L
Sbjct: 5 FSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDP-----W----TLKI 55
Query: 277 ADLKDDMACATAYLQLYSCMQVRYILDN-CKEDMDFFNTWIEKGIIDRLST 326
+ I C E WI + L+
Sbjct: 56 SGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLAL 106
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 207
Score = 27.0 bits (59), Expect = 4.2
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284
G+L + + F +++P L A+ L D+
Sbjct: 28 KGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLD 82
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp.
[TaxId: 1143]}
Length = 222
Score = 26.6 bits (58), Expect = 7.1
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284
G + +Y + N+Y E + H + PEL L+ D+
Sbjct: 30 KGVVEKNSYRKLVGNLYFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDLQ 84
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 26.2 bits (56), Expect = 8.5
Identities = 40/332 (12%), Positives = 84/332 (25%), Gaps = 37/332 (11%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPII--TASDCEGAGEQFCVTTLIPSSREAAE 201
+ V + + + GF I P + +GE+ T + E
Sbjct: 14 YPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGRE 73
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA----LSNVYTFGPTFRAEN 257
+ + S+ ++P ++ A +
Sbjct: 74 VTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSP 133
Query: 258 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317
+ +A I L D+ + + ++ + +D ++
Sbjct: 134 EADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISR 193
Query: 318 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 377
+ +D+L + + D + K ++ ++G
Sbjct: 194 EEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEIARMAAVEDLLASYGVK 253
Query: 378 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 437
V ++Y G A D + ++GG GR D L
Sbjct: 254 NVRYDFSIVRGLSYY-----TGIVFEAYDRS-GQFRAILGG-----------GRYDNL-- 294
Query: 438 NRDSYWWYLDLRHYG--SVPHAGFGLGFERLV 467
SVP GFG+G +
Sbjct: 295 ----------ASLMSGESVPAVGFGMGDAVIS 316
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,879,028
Number of extensions: 89143
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 34
Length of query: 491
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,185,626
Effective search space: 476621652
Effective search space used: 476621652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)