Your job contains 1 sequence.
>011198
MSATKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGS
ASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSND
GATNGELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSC
VSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPAN
WILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQN
NLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGY
HTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSE
DKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRR
YNIDLYLPPPY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011198
(491 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150931 - symbol:TDP1 "tyrosyl-DNA phosphodies... 1279 6.4e-166 2
UNIPROTKB|E7EPD8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 476 2.7e-45 1
UNIPROTKB|G3V2F4 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 476 2.7e-45 1
UNIPROTKB|Q9NUW8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 476 2.7e-45 1
UNIPROTKB|E2REL5 - symbol:TDP1 "Uncharacterized protein" ... 467 2.4e-44 1
UNIPROTKB|F1MST1 - symbol:TDP1 "Uncharacterized protein" ... 459 1.7e-43 1
MGI|MGI:1920036 - symbol:Tdp1 "tyrosyl-DNA phosphodiester... 451 1.2e-42 1
UNIPROTKB|F1SDA7 - symbol:LOC100625067 "Uncharacterized p... 446 4.0e-42 1
RGD|1309618 - symbol:Tdp1 "tyrosyl-DNA phosphodiesterase ... 446 4.0e-42 1
UNIPROTKB|F1NSQ5 - symbol:TDP1 "Uncharacterized protein" ... 433 9.6e-41 1
ZFIN|ZDB-GENE-090909-1 - symbol:tdp1 "tyrosyl-DNA phospho... 411 3.5e-38 1
UNIPROTKB|Q86TV8 - symbol:TDP1 "Full-length cDNA clone CS... 335 2.3e-30 1
UNIPROTKB|G3V2J6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 269 7.0e-23 1
UNIPROTKB|G4N013 - symbol:MGG_06176 "Uncharacterized prot... 280 7.1e-22 1
UNIPROTKB|Q9BRS7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 258 1.2e-21 1
FB|FBgn0260817 - symbol:gkt "glaikit" species:7227 "Droso... 269 3.7e-20 2
WB|WBGene00018678 - symbol:F52C12.1 species:6239 "Caenorh... 245 3.8e-18 1
ASPGD|ASPL0000004965 - symbol:AN5903 species:162425 "Emer... 229 5.1e-16 1
UNIPROTKB|H0YJ44 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 200 2.5e-14 1
UNIPROTKB|G3V2U6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 187 1.8e-12 1
UNIPROTKB|H0YJL7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 159 7.8e-11 1
POMBASE|SPCP31B10.05 - symbol:tdp1 "tyrosyl-DNA phosphodi... 132 1.0e-09 2
DICTYBASE|DDB_G0273869 - symbol:DDB_G0273869 "Tyrosyl-DNA... 133 0.00013 2
DICTYBASE|DDB_G0273125 - symbol:DDB_G0273125 "Tyrosyl-DNA... 133 0.00013 2
>TAIR|locus:2150931 [details] [associations]
symbol:TDP1 "tyrosyl-DNA phosphodiesterase 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA]
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CP002688 GO:GO:0006281
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 HSSP:Q9NUW8 EMBL:AY150498 EMBL:FJ858738
IPI:IPI00525009 RefSeq:NP_197021.2 UniGene:At.27105
ProteinModelPortal:Q8H1D9 IntAct:Q8H1D9 PaxDb:Q8H1D9 PRIDE:Q8H1D9
EnsemblPlants:AT5G15170.1 GeneID:831369 KEGG:ath:AT5G15170
TAIR:At5g15170 InParanoid:Q8H1D9 OMA:CRAMPHI PhylomeDB:Q8H1D9
ProtClustDB:CLSN2690163 Genevestigator:Q8H1D9 Uniprot:Q8H1D9
Length = 605
Score = 1279 (455.3 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 232/333 (69%), Positives = 264/333 (79%)
Query: 148 EALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLL 207
EA+ F +KLPSTFRLL V LP WANTSCVSI DVI+GD++ AILSNYMVDIDWL+
Sbjct: 128 EAIRRFCPPNEKLPSTFRLLSVDALPDWANTSCVSINDVIEGDVVAAILSNYMVDIDWLM 187
Query: 208 PACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG 267
ACP LA IP V+VIHGE DG E+++R KPANWILHKP LPISFGTHHSKA+ L+YPRG
Sbjct: 188 SACPKLANIPQVMVIHGEGDGRQEYIQRKKPANWILHKPRLPISFGTHHSKAIFLVYPRG 247
Query: 268 VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQN-NLSEECGFENDLIDYLSTLKWPEFSA 326
VR++VHTANLIHVDWNNKSQGLWMQDFP KD + + + CGFE DLIDYL+ LKWPEF+A
Sbjct: 248 VRVVVHTANLIHVDWNNKSQGLWMQDFPWKDDDKDPPKGCGFEGDLIDYLNVLKWPEFTA 307
Query: 327 NLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKG 386
NLP G A VRLIASVPGYHTG +L KWGHMKLRT+LQEC F++
Sbjct: 308 NLPGRGNVKINAAFFKKFDYSDATVRLIASVPGYHTGFNLNKWGHMKLRTILQECIFDRE 367
Query: 387 FKKSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEG 446
F++SPL+YQFSSLGSLDEKW+AE EDKTPLG G+ LI+WPTVEDVRCSLEG
Sbjct: 368 FRRSPLIYQFSSLGSLDEKWLAEFGNSLSSGITEDKTPLGPGDSLIIWPTVEDVRCSLEG 427
Query: 447 YAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGR 479
YAAGNAIPSP KNV+K FLKKYWA+WKA H+ R
Sbjct: 428 YAAGNAIPSPLKNVEKPFLKKYWARWKADHSAR 460
Score = 357 (130.7 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 69/119 (57%), Positives = 94/119 (78%)
Query: 1 MSATKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGS 60
M+ +++ YL+PL +L+EDNS P++ LS+GPN+IGR N+ + DKRLSRKHIT+ S GS
Sbjct: 1 MAHSQVAYLIPLKADLKEDNSSPRITLSEGPNIIGRGNVSIVDKRLSRKHITIIVSTSGS 60
Query: 61 ASLVVDGTNPVVVKS-GD-QRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLS-RSQKR 116
ASL VDGTNPVV++S GD +RKK+ +E VS+ + D+IELIPGHHFFK V L+ R+ K+
Sbjct: 61 ASLSVDGTNPVVIRSSGDGERKKVKPSEEVSVCNDDLIELIPGHHFFKLVLLNGRAAKK 119
>UNIPROTKB|E7EPD8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 IPI:IPI00872094
ProteinModelPortal:E7EPD8 SMR:E7EPD8 Ensembl:ENST00000393452
UCSC:uc010atn.3 ArrayExpress:E7EPD8 Bgee:E7EPD8 Uniprot:E7EPD8
Length = 589
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 136/441 (30%), Positives = 216/441 (48%)
Query: 78 QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
+R+K S E + S +D ++ +P K V NDG +G +
Sbjct: 75 KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDK-LPSTFRLLRVQGLPAWANTSCVSIRDVI 187
++++++++ +G+ + DK P F L RV G+ N+ + I+D++
Sbjct: 135 CHRLKEEEDEYETSGEGQD-----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDIL 189
Query: 188 Q---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWI 242
G ++ + NY D+DWL+ P + +L++HG+ H+ KP N
Sbjct: 190 SPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENIS 249
Query: 243 LHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQN 300
L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D
Sbjct: 250 LCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGT 309
Query: 301 NLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVP 358
+ S E F+ DLI YL P + V LI S P
Sbjct: 310 HKSGESPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTP 359
Query: 359 GYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXX 413
G GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 360 GRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKES 419
Query: 414 XXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAK 471
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ K
Sbjct: 420 MLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHK 479
Query: 472 WKASHTGRRY---NIDLYLPP 489
W A +GR +I Y+ P
Sbjct: 480 WSAETSGRSNAMPHIKTYMRP 500
>UNIPROTKB|G3V2F4 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 ProteinModelPortal:G3V2F4 SMR:G3V2F4
Ensembl:ENST00000555880 ArrayExpress:G3V2F4 Bgee:G3V2F4
Uniprot:G3V2F4
Length = 578
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 136/441 (30%), Positives = 216/441 (48%)
Query: 78 QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
+R+K S E + S +D ++ +P K V NDG +G +
Sbjct: 75 KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDK-LPSTFRLLRVQGLPAWANTSCVSIRDVI 187
++++++++ +G+ + DK P F L RV G+ N+ + I+D++
Sbjct: 135 CHRLKEEEDEYETSGEGQD-----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDIL 189
Query: 188 Q---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWI 242
G ++ + NY D+DWL+ P + +L++HG+ H+ KP N
Sbjct: 190 SPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENIS 249
Query: 243 LHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQN 300
L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D
Sbjct: 250 LCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGT 309
Query: 301 NLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVP 358
+ S E F+ DLI YL P + V LI S P
Sbjct: 310 HKSGESPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTP 359
Query: 359 GYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXX 413
G GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 360 GRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKES 419
Query: 414 XXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAK 471
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ K
Sbjct: 420 MLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHK 479
Query: 472 WKASHTGRRY---NIDLYLPP 489
W A +GR +I Y+ P
Sbjct: 480 WSAETSGRSNAMPHIKTYMRP 500
>UNIPROTKB|Q9NUW8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000012 "single strand break repair"
evidence=IDA;IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] Reactome:REACT_216 InterPro:IPR010347 Pfam:PF06087
UniProt:Q9NUW8 GO:GO:0005634 GO:GO:0005737 GO:GO:0008219
GO:GO:0003690 GO:GO:0003697 GO:GO:0004527 GO:GO:0006302
GO:GO:0090305 GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR EMBL:AK001952 EMBL:DQ367843
EMBL:AL137128 EMBL:BC015474 EMBL:AF182002 EMBL:AF182003
IPI:IPI00655885 RefSeq:NP_001008744.1 RefSeq:NP_060789.2
UniGene:Hs.209945 PDB:1JY1 PDB:1MU7 PDB:1MU9 PDB:1NOP PDB:1QZQ
PDB:1RFF PDB:1RFI PDB:1RG1 PDB:1RG2 PDB:1RGT PDB:1RGU PDB:1RH0
PDBsum:1JY1 PDBsum:1MU7 PDBsum:1MU9 PDBsum:1NOP PDBsum:1QZQ
PDBsum:1RFF PDBsum:1RFI PDBsum:1RG1 PDBsum:1RG2 PDBsum:1RGT
PDBsum:1RGU PDBsum:1RH0 ProteinModelPortal:Q9NUW8 SMR:Q9NUW8
IntAct:Q9NUW8 MINT:MINT-3074488 STRING:Q9NUW8 PhosphoSite:Q9NUW8
DMDM:37999797 PaxDb:Q9NUW8 PRIDE:Q9NUW8 Ensembl:ENST00000335725
Ensembl:ENST00000393454 GeneID:55775 KEGG:hsa:55775 UCSC:uc001xxy.3
CTD:55775 GeneCards:GC14P090422 HGNC:HGNC:18884 MIM:607198
MIM:607250 neXtProt:NX_Q9NUW8 Orphanet:94124 PharmGKB:PA421
HOGENOM:HOG000067775 HOVERGEN:HBG061242 InParanoid:Q9NUW8
OrthoDB:EOG4NP736 PhylomeDB:Q9NUW8 SABIO-RK:Q9NUW8 BindingDB:Q9NUW8
ChEMBL:CHEMBL1075138 EvolutionaryTrace:Q9NUW8 GenomeRNAi:55775
NextBio:60841 ArrayExpress:Q9NUW8 Bgee:Q9NUW8 CleanEx:HS_TDP1
Genevestigator:Q9NUW8 GermOnline:ENSG00000042088
Length = 608
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 136/441 (30%), Positives = 216/441 (48%)
Query: 78 QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
+R+K S E + S +D ++ +P K V NDG +G +
Sbjct: 75 KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDK-LPSTFRLLRVQGLPAWANTSCVSIRDVI 187
++++++++ +G+ + DK P F L RV G+ N+ + I+D++
Sbjct: 135 CHRLKEEEDEYETSGEGQD-----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDIL 189
Query: 188 Q---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWI 242
G ++ + NY D+DWL+ P + +L++HG+ H+ KP N
Sbjct: 190 SPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENIS 249
Query: 243 LHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQN 300
L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D
Sbjct: 250 LCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGT 309
Query: 301 NLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVP 358
+ S E F+ DLI YL P + V LI S P
Sbjct: 310 HKSGESPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTP 359
Query: 359 GYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXX 413
G GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 360 GRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKES 419
Query: 414 XXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAK 471
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ K
Sbjct: 420 MLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHK 479
Query: 472 WKASHTGRRY---NIDLYLPP 489
W A +GR +I Y+ P
Sbjct: 480 WSAETSGRSNAMPHIKTYMRP 500
>UNIPROTKB|E2REL5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:AAEX03005923
RefSeq:XP_547950.2 Ensembl:ENSCAFT00000027726 GeneID:490828
KEGG:cfa:490828 Uniprot:E2REL5
Length = 609
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 118/336 (35%), Positives = 176/336 (52%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 164 PFQFYLTRVSGIKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLIKQYPPEFRKK 223
Query: 218 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 275
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 224 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 283
Query: 276 NLIHVDWNNKSQGLWMQD-FPLKDQ-NNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 331
NLIH DW+ K+QG+W+ +P Q + S E F+ DLI YL +A L
Sbjct: 284 NLIHADWHQKTQGIWLSPLYPRMAQATHRSGESATHFKADLISYLMAYN----AAPLKEW 339
Query: 332 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQE--CTFEKGFKK 389
V LI S PG GS WGH +LR +L+E + KG +
Sbjct: 340 ------IDTIHEHDLSETNVYLIGSTPGRFQGSHKDNWGHFRLRKLLREHASSITKG-ES 392
Query: 390 SPLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSL 444
P+V QFSS+GS+ D KW+ +E E +TP PL +++P+VE+VR SL
Sbjct: 393 WPIVGQFSSIGSMGADDSKWLCSEFKESLVTLGKESRTPGKSAVPLHLIYPSVENVRTSL 452
Query: 445 EGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGR 479
EGY AG ++P + +K ++L Y+ KW A +GR
Sbjct: 453 EGYPAGGSLPYSIQTAEKQNWLHSYFHKWMADTSGR 488
>UNIPROTKB|F1MST1 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase activity"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:DAAA02030029
IPI:IPI00717294 RefSeq:NP_001180084.1 UniGene:Bt.26165
Ensembl:ENSBTAT00000017463 GeneID:517053 KEGG:bta:517053
NextBio:20872364 Uniprot:F1MST1
Length = 612
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 121/348 (34%), Positives = 181/348 (52%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
P F L RV G+ NT + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 167 PFQFYLTRVSGIKPKYNTGALHIKDILSPLFGTLVSSAQFNYCFDVDWLIRQYPPEFRKK 226
Query: 218 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 275
VL++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 227 PVLLVHGDKREAKAHLLAEAKPYGNVTLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 286
Query: 276 NLIHVDWNNKSQGLWMQD-FP--LKDQNNLSEEC-GFENDLIDYLSTLKWPEFSANLPAH 331
NLI DW+ K+QG+W+ +P + + E F+ DLI YL+ +A L
Sbjct: 287 NLIREDWHQKTQGIWLSPLYPRIVHGTHGSGESATNFKADLISYLAAYN----AAPLKEW 342
Query: 332 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS- 390
V LIAS PG G+ WGH +LR +L+E +S
Sbjct: 343 ------IDTIQEHDLSETNVYLIASTPGRFQGNQKDNWGHFRLRKLLKEHASPMPKAESW 396
Query: 391 PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLE 445
P++ QFSS+GS+ DE KW+ +E E +T LG PL +++P+VE+VR SLE
Sbjct: 397 PVIGQFSSIGSMGADESKWLCSEFKESLVTLGKESRT-LGSAAPLHLIYPSVENVRTSLE 455
Query: 446 GYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRRY---NIDLYLPP 489
GY AG ++P + +K ++L Y+ KW A +GR +I YL P
Sbjct: 456 GYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTSGRSNAMPHIKTYLRP 503
>MGI|MGI:1920036 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO] InterPro:IPR010347 Pfam:PF06087
MGI:MGI:1920036 GO:GO:0005634 GO:GO:0004527 GO:GO:0090305
GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417 PANTHER:PTHR12415
HOGENOM:HOG000067775 HOVERGEN:HBG061242 EMBL:AK033868 EMBL:BC019804
IPI:IPI00222253 UniGene:Mm.312323 UniGene:Mm.487464
UniGene:Mm.488658 ProteinModelPortal:Q8BJ37 SMR:Q8BJ37
IntAct:Q8BJ37 STRING:Q8BJ37 PhosphoSite:Q8BJ37 PaxDb:Q8BJ37
PRIDE:Q8BJ37 InParanoid:Q8BJ37 CleanEx:MM_TDP1
Genevestigator:Q8BJ37 GermOnline:ENSMUSG00000021177 Uniprot:Q8BJ37
Length = 609
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 120/349 (34%), Positives = 182/349 (52%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
P F L RV G+ A N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 164 PFQFYLTRVSGIKAKYNSKALHIKDILSPLFGTLVSSAQFNYCFDVDWLIKQYPPEFRKN 223
Query: 218 HVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 275
+L++HG+ + + + KP AN L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 224 PILLVHGDKREAKADLHAQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 283
Query: 276 NLIHVDWNNKSQGLWMQD-FPLKDQ-NNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 331
NLI DW+ K+QG+W+ +P DQ ++ + E F+ DL YL+ P +
Sbjct: 284 NLIREDWHQKTQGIWLSPLYPRIDQGSHTAGESSTRFKADLTSYLTAYNAPPLQEWIDI- 342
Query: 332 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQEC--TFEKGFKK 389
V LI S PG GS WGH +LR +LQ + KG +
Sbjct: 343 ---------IQEHDLSETNVYLIGSTPGRFQGSHRDNWGHFRLRKLLQAHAPSTPKG-EC 392
Query: 390 SPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSL 444
P+V QFSS+GSL DE KW+ +E E + P PL +++P+VE+VR SL
Sbjct: 393 WPIVGQFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTSL 452
Query: 445 EGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRRY---NIDLYLPP 489
EGY AG ++P + +K +L Y+ KW A +GR +I Y+ P
Sbjct: 453 EGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIKTYMRP 501
>UNIPROTKB|F1SDA7 [details] [associations]
symbol:LOC100625067 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 PANTHER:PTHR12415 OMA:WGHLRLR
EMBL:CU633760 Ensembl:ENSSSCT00000002701 Uniprot:F1SDA7
Length = 607
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 122/352 (34%), Positives = 182/352 (51%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
P F L RV G+ N+ + IRD++ G ++ + NY D+DWL+ P +
Sbjct: 162 PFQFYLTRVSGIKPKYNSGALHIRDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 221
Query: 218 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 275
VL++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 222 PVLLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 281
Query: 276 NLIHVDWNNKSQGLWMQDFPLKDQ----NNLSEECG--FENDLIDYLSTLKWPEFSANLP 329
NLIH DW+ K+QG+W+ PL + ++ S E F+ DLI YLS ++A
Sbjct: 282 NLIHADWHQKTQGIWLS--PLYQRIVPGSHRSGESATHFKADLISYLSA-----YNA--- 331
Query: 330 AHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQE--CTFEKGF 387
V LI S PG G WGH +LR +L+E + K
Sbjct: 332 --AALKEWIDTIQEHDLSETNVYLIGSTPGRFQGDQKDNWGHFRLRKLLKENGSSIPKA- 388
Query: 388 KKSPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRC 442
+ P+V QFSS+ S+ DE KW+ +E E +TP G PL +++P+VE+VR
Sbjct: 389 ESWPVVGQFSSISSMGADESKWLCSEFKESLVTLGKESRTPGG-AVPLHLIYPSVENVRT 447
Query: 443 SLEGYA-AGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRRY---NIDLYLPP 489
SLEGY AG ++P + +K +L Y+ KW A+ +GR +I Y+ P
Sbjct: 448 SLEGYPEAGGSLPYSIQTAEKQTWLHSYFHKWSAATSGRSNAMPHIKTYMRP 499
>RGD|1309618 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO;ISS] InterPro:IPR010347 Pfam:PF06087
RGD:1309618 GO:GO:0005634 GO:GO:0005737 GO:GO:0003690 GO:GO:0003697
GO:GO:0004527 GO:GO:0006302 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775
HOGENOM:HOG000067775 HOVERGEN:HBG061242 OrthoDB:EOG4NP736
EMBL:BC098739 IPI:IPI00367735 RefSeq:NP_001026827.1
UniGene:Rn.12661 ProteinModelPortal:Q4G056 SMR:Q4G056 STRING:Q4G056
PhosphoSite:Q4G056 PRIDE:Q4G056 Ensembl:ENSRNOT00000005167
GeneID:314380 KEGG:rno:314380 UCSC:RGD:1309618 InParanoid:Q4G056
NextBio:667547 Genevestigator:Q4G056 Uniprot:Q4G056
Length = 609
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 123/381 (32%), Positives = 197/381 (51%)
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQ 188
S + ++ DE+ +G+ + + + + ++ P F L RV G+ A N+ + I+D++
Sbjct: 136 SHRAQRADEEYETSGEGQD--IWDM-LDKEN-PFQFYLTRVSGIKAKYNSKALHIKDILS 191
Query: 189 ---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGES-DGTLEHMKRNKP-ANWIL 243
G ++ + NY D++WL+ P + +L++HG+ + + + KP AN L
Sbjct: 192 PLFGTLVSSAQFNYCFDVNWLIKQYPPEFRKKPILLVHGDKREAKADLHAQAKPYANISL 251
Query: 244 HKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNN 301
+ L I+FGTHH+K MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +P + N+
Sbjct: 252 CQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLYPRIYQGNH 311
Query: 302 LSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPG 359
S E F+ DL YL P + V LI S PG
Sbjct: 312 TSGESSTHFKADLTSYLMAYNAPPLQEWIDI----------IQEHDLSETNVYLIGSTPG 361
Query: 360 YHTGSSLKKWGHMKLRTVLQEC--TFEKGFKKSPLVYQFSSLGSL--DE-KWM-AELXXX 413
GS WGH +LR +LQ + +G + P+V QFSS+GSL DE KW+ +E
Sbjct: 362 RFQGSHKDNWGHFRLRKLLQAHAPSAPRG-ECWPVVGQFSSIGSLGPDESKWLCSEFKES 420
Query: 414 XXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAK 471
E +TP PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ K
Sbjct: 421 LLAVREEGRTPGRSAVPLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHK 480
Query: 472 WKASHTGRRY---NIDLYLPP 489
W A +GR +I Y+ P
Sbjct: 481 WSAETSGRSNAMPHIKTYMRP 501
>UNIPROTKB|F1NSQ5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000012 "single strand break repair" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
GO:GO:0003690 GO:GO:0003697 GO:GO:0006302 GO:GO:0000012
GO:GO:0017005 GeneTree:ENSGT00390000002211 PANTHER:PTHR12415
OMA:WGHLRLR EMBL:AADN02003623 IPI:IPI00587496
Ensembl:ENSGALT00000017359 Uniprot:F1NSQ5
Length = 602
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 119/382 (31%), Positives = 190/382 (49%)
Query: 135 QDEQD-NENGKNSEEALCNFHVSRDKL----PSTFRLLRVQGLPAWANTSCVSIRDVIQ- 188
+DE NE ++ E L + D L P F L +V+G+ N+ + I+D++
Sbjct: 123 KDEHSKNEKAEDYNEVLGEPQDTWDLLSGGNPFGFFLTKVRGIEQSYNSGALHIKDILSP 182
Query: 189 --GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGES-DGTLEHMKRNKP-ANWILH 244
G ++ + NY +D+ WL+ P + +L++HGE + E + + +P N
Sbjct: 183 LFGTLVSSAQFNYCIDVAWLVRQYPQEYRKKPLLIVHGEKRESKAELLAQARPFENISFC 242
Query: 245 KPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDF----PLKDQN 300
+ L I+FGTHH+K MLL+Y G+R+++HT+NLI DW+ K+QG+W+ P +
Sbjct: 243 QAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIAEDWHQKTQGIWLSPLYPRLPQGSSD 302
Query: 301 NLSE-ECGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPG 359
+ E E F++DLI YL P + V L+ S PG
Sbjct: 303 SAGESETNFKSDLISYLMAYSSPVLKEWIDL----------IREHDLSETRVYLLGSTPG 352
Query: 360 YHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSLD---EKWM-AELXXXX 414
+ G +KWGH+KLR +L++ ++S P+V QFSS+GSL KW+ +E
Sbjct: 353 RYQGIDKEKWGHLKLRKLLKDHASSIPAQESWPVVGQFSSIGSLGADGSKWLCSEFQESL 412
Query: 415 XXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKW 472
L P+ +V+PTV +VR SLEGY AG ++P + K +L Y+ KW
Sbjct: 413 VAAGSGVAALLKCDVPIHLVYPTVSNVRQSLEGYPAGGSLPYSIQTAQKQLWLHSYFHKW 472
Query: 473 KASHTGRRY---NIDLYLPPPY 491
A +GR + +I Y+ P +
Sbjct: 473 SAEVSGRSHAMPHIKTYMRPSH 494
>ZFIN|ZDB-GENE-090909-1 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase 1"
species:7955 "Danio rerio" [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 ZFIN:ZDB-GENE-090909-1
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 KO:K10862 PANTHER:PTHR12415 CTD:55775
EMBL:BX005004 EMBL:BX927236 IPI:IPI00900849 RefSeq:XP_700174.2
UniGene:Dr.76799 Ensembl:ENSDART00000108712
Ensembl:ENSDART00000150149 GeneID:571485 KEGG:dre:571485
NextBio:20890577 Uniprot:E7FEK0
Length = 615
Score = 411 (149.7 bits), Expect = 3.5e-38, P = 3.5e-38
Identities = 112/333 (33%), Positives = 172/333 (51%)
Query: 164 FRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVL 220
F L +V G+P NT + I++++ G + ++ NY DI W++ P + V+
Sbjct: 173 FYLNKVTGIPKKYNTGALHIKEILSPMFGTLKESVQFNYCFDIPWMVEQYPPEFRNKPVV 232
Query: 221 VIHGES-DGTLEHMKRNKPANWILH-KPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLI 278
++HGE + +++ KP I + L I+FGTHH+K MLL Y G R+I+ T+NLI
Sbjct: 233 LVHGEKRESKACLIEQAKPYPHISFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLI 292
Query: 279 HVDWNNKSQGLWMQD-FPLKDQNN---LSEEC-GFENDLIDYLSTLKWPEFSANLPAHGX 333
DW K+QG+WM +P Q + E GF+ DL++YL + PE AN
Sbjct: 293 RADWYQKTQGMWMSPLYPRLPQGSPGTAGESLTGFKRDLLEYLEAYRAPEL-ANW----- 346
Query: 334 XXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFE-KGFKKSPL 392
V LI S PG + G +++KWGH++LR +L E T + ++ +
Sbjct: 347 ----IERIKQHDLSETRVYLIGSTPGRYQGPAMEKWGHLRLRKLLSEHTQPMQNEERWHV 402
Query: 393 VYQFSSLGS--LDE-KWMAELXXXXXXXXXEDKTPLGIGEP--LIVWPTVEDVRCSLEGY 447
+ QFSS+GS LD+ KW+A + L E L+++P+VE+VR SLEGY
Sbjct: 403 LGQFSSIGSMGLDKTKWLAAEFQRTLTTLGKAGKSLASPETQMLLIYPSVENVRTSLEGY 462
Query: 448 AAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGR 479
AG ++P + K +L Y+ W A TGR
Sbjct: 463 PAGGSLPYSIQTAQKQLWLHSYFHGWHADVTGR 495
>UNIPROTKB|Q86TV8 [details] [associations]
symbol:TDP1 "Full-length cDNA clone CS0DI031YK16 of
Placenta of Homo sapiens (human)" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415 EMBL:AL137128
UniGene:Hs.209945 HGNC:HGNC:18884 EMBL:BX161451 IPI:IPI00384157
HSSP:Q9NUW8 SMR:Q86TV8 STRING:Q86TV8 Ensembl:ENST00000357382
UCSC:uc001xya.3 HOGENOM:HOG000147157 HOVERGEN:HBG067466
Uniprot:Q86TV8
Length = 369
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 88/246 (35%), Positives = 128/246 (52%)
Query: 258 KAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLI 313
K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI
Sbjct: 26 KMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLI 85
Query: 314 DYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMK 373
YL P + V LI S PG GS WGH +
Sbjct: 86 SYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFR 135
Query: 374 LRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIG 428
L+ +L++ +S P+V QFSS+GSL DE KW+ +E E KTP
Sbjct: 136 LKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSS 195
Query: 429 EPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRRY---NI 483
PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GR +I
Sbjct: 196 VPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHI 255
Query: 484 DLYLPP 489
Y+ P
Sbjct: 256 KTYMRP 261
>UNIPROTKB|G3V2J6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2J6 SMR:G3V2J6 Ensembl:ENST00000553617
ArrayExpress:G3V2J6 Bgee:G3V2J6 Uniprot:G3V2J6
Length = 219
Score = 269 (99.8 bits), Expect = 7.0e-23, P = 7.0e-23
Identities = 64/209 (30%), Positives = 113/209 (54%)
Query: 112 RSQKRVS--NDGAT-----NGELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDK-LPST 163
+ +K +S NDG +G + ++++++++ +G+ + DK P
Sbjct: 12 KKEKDISAPNDGTAQRTENHGAPACHRLKEEEDEYETSGEGQD-----IWDMLDKGNPFQ 66
Query: 164 FRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVL 220
F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P + +L
Sbjct: 67 FYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPIL 126
Query: 221 VIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLI 278
++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLI
Sbjct: 127 LVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLI 186
Query: 279 HVDWNNKSQGLWMQD-FP-LKDQNNLSEE 305
H DW+ K+QG+W+ +P + D + S E
Sbjct: 187 HADWHQKTQGIWLSPLYPRIADGTHKSGE 215
>UNIPROTKB|G4N013 [details] [associations]
symbol:MGG_06176 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CM001233 GO:GO:0006281
GO:GO:0008081 KO:K10862 PANTHER:PTHR12415 RefSeq:XP_003712058.1
EnsemblFungi:MGG_06176T0 GeneID:2684314 KEGG:mgr:MGG_06176
Uniprot:G4N013
Length = 555
Score = 280 (103.6 bits), Expect = 7.1e-22, P = 7.1e-22
Identities = 104/357 (29%), Positives = 165/357 (46%)
Query: 119 NDG-ATNGELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWAN 177
NDG AT S+ + D KN+++ + S FRL R++ L N
Sbjct: 42 NDGSATKSGSGSETASEPDIASRS--KNAQQPRLE-SPGQAIFSSPFRLTRIRDLGEEDN 98
Query: 178 TSCVSIRDVIQGDIIVAIL--SNYMVDIDWLLPACPV-LAKIPHVLVIHG---ESDGT-- 229
+ + D+I GD ++A NY+ DI++LL A + + V V+HG + D +
Sbjct: 99 ADALGLNDII-GDPLIAECWDFNYLHDIEFLLDALDQDVRDVVKVHVVHGFWKKDDPSRI 157
Query: 230 LEHMKRNKPANWILHKPPLPISFGTHHSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQG 288
L K N +LH LP FGTHHSK ++L+ + ++I+HTAN+I DW N + G
Sbjct: 158 LLQDDAEKHKNVVLHTAFLPEIFGTHHSKMLVLLRHDDTAQVIIHTANMIPKDWTNMTNG 217
Query: 289 LWMQD-FPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGXXXXX--XXXXXXXX 345
+W+ PL + ++ +EN L + + L A+
Sbjct: 218 IWLSPRLPLLQGQDPADASQYEN-LAEGTGYKFKIDLLNYLRAYDDKRVVCRDLVTNLEK 276
Query: 346 XXXAAVR--LIASVPGYH--TGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGS 401
+++R LIASVPG H T S WG + ++ L+ + G KS +V Q SS+ +
Sbjct: 277 YDFSSIRGTLIASVPGRHDFTDLSTSAWGWVAIKRALRSVPLQVG--KSEVVTQISSIAT 334
Query: 402 LD--EKWMAELXXXXXXXXXEDKTPLGIG-EPL--IVWPTVEDVRCSLEGYAAGNAI 453
L + W L KT G+ P I++PT +++R SL+GY +G +I
Sbjct: 335 LGPTDTW---LQRTLFESMCRGKTT-GVAPRPQFKIIFPTADEIRRSLDGYGSGGSI 387
>UNIPROTKB|Q9BRS7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 UniGene:Hs.209945 HGNC:HGNC:18884 HSSP:Q9NUW8
EMBL:BC006083 IPI:IPI01015250 SMR:Q9BRS7 STRING:Q9BRS7
Ensembl:ENST00000545686 Uniprot:Q9BRS7
Length = 298
Score = 258 (95.9 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 66/226 (29%), Positives = 114/226 (50%)
Query: 78 QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
+R+K S E + S +D ++ +P K V NDG +G +
Sbjct: 75 KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDK-LPSTFRLLRVQGLPAWANTSCVSIRDVI 187
++++++++ +G+ + DK P F L RV G+ N+ + I+D++
Sbjct: 135 CHRLKEEEDEYETSGEGQD-----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDIL 189
Query: 188 Q---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWI 242
G ++ + NY D+DWL+ P + +L++HG+ H+ KP N
Sbjct: 190 SPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENIS 249
Query: 243 LHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQG 288
L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 250 LCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQG 295
>FB|FBgn0260817 [details] [associations]
symbol:gkt "glaikit" species:7227 "Drosophila melanogaster"
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0045197 "establishment or maintenance of
epithelial cell apical/basal polarity" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
EMBL:AE014134 GO:GO:0006281 GO:GO:0007417 GO:GO:0004527
GO:GO:0090305 InterPro:IPR019406 Pfam:PF10283 GO:GO:0017005
GO:GO:0045197 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 EMBL:AJ277122 EMBL:AY051884
EMBL:AY060810 RefSeq:NP_523465.2 UniGene:Dm.3843
ProteinModelPortal:Q9VQM4 SMR:Q9VQM4 MINT:MINT-1647814
STRING:Q9VQM4 PaxDb:Q9VQM4 PRIDE:Q9VQM4 EnsemblMetazoa:FBtr0077574
GeneID:33530 KEGG:dme:Dmel_CG8825 CTD:33530 FlyBase:FBgn0260817
InParanoid:Q9VQM4 OMA:WGHLRLR OrthoDB:EOG4HMGRD PhylomeDB:Q9VQM4
GenomeRNAi:33530 NextBio:784060 Bgee:Q9VQM4 GermOnline:CG8825
Uniprot:Q9VQM4
Length = 580
Score = 269 (99.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 92/322 (28%), Positives = 147/322 (45%)
Query: 173 PAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPA---CPVLAKIPHVLVIHGES 226
P + +++++++ G+I + N+MVDI WLL +L K P +L+ ES
Sbjct: 162 PTHSEPLSITLQEILDESLGEIESTVQINFMVDIGWLLGHYYFAGILDK-PLLLLYGDES 220
Query: 227 DGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNK 285
L K + I K P P F T H+K M L Y G +R+++ TANL DW+N+
Sbjct: 221 PELLSIGKFKQQVTAIRVKMPTP--FATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNR 278
Query: 286 SQGLWMQD----FPLKDQNNLSEEC-GFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXX 340
+QGLW+ P+ E GF+ DL+ YL K + +
Sbjct: 279 TQGLWISPKLPALPVDADTGAGESLTGFKQDLMLYLVEYKISQLQPWI----------AR 328
Query: 341 XXXXXXXXAAVRLIASVPGYHTGSSLK--KWGHMKLRTVLQECTFEKGFKKSPLVYQFSS 398
V + SVPG H S++ WGH +L ++L + + P+V Q SS
Sbjct: 329 IRNSDFSAINVFFLGSVPGGHREGSVRGHPWGHARLASLLAKHAAPID-DRIPVVCQSSS 387
Query: 399 LGSLDEKWMAELXXXXXXXXXEDKTPLG-IGE--PL-IVWPTVEDVRCSLEGYAAGNAIP 454
+GSL A + +D TP+G + + P +++P+ +V S +G G +P
Sbjct: 388 IGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLP 447
Query: 455 SPQKNVDKD-FLKKYWAKWKAS 475
+ DK +LK Y +WK+S
Sbjct: 448 YGKNTNDKQPWLKDYLQQWKSS 469
Score = 37 (18.1 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 70 PVVVKSGDQRKKL 82
PVV++ G KKL
Sbjct: 132 PVVIEKGGMAKKL 144
>WB|WBGene00018678 [details] [associations]
symbol:F52C12.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR001736 InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
GO:GO:0008081 EMBL:FO081438 PIR:A88641 RefSeq:NP_500149.1
ProteinModelPortal:Q9TXV7 STRING:Q9TXV7 PaxDb:Q9TXV7
EnsemblMetazoa:F52C12.1.1 EnsemblMetazoa:F52C12.1.2 GeneID:176996
KEGG:cel:CELE_F52C12.1 UCSC:F52C12.1 CTD:176996 WormBase:F52C12.1
eggNOG:NOG274417 GeneTree:ENSGT00390000002211 HOGENOM:HOG000199611
InParanoid:Q9TXV7 KO:K10862 OMA:VIHTANM NextBio:894908
PANTHER:PTHR12415 Uniprot:Q9TXV7
Length = 451
Score = 245 (91.3 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 92/323 (28%), Positives = 148/323 (45%)
Query: 172 LPAWANTSCVSIRDVIQGDI--IVAILSNYMVDIDWLLPACPV-LAKIPHVLVIHGESDG 228
+P + S S+ D I DI I ++ ++M+D ++L+ + P L + P LV+
Sbjct: 46 VPRQESESSRSL-DEILADIRPINSLHFSFMLDFEFLIGSYPPSLREYPITLVVGAPDAP 104
Query: 229 TLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQ 287
L +N+ ++ LPI FGTHH+K +L G +IV TANL+ DW K+Q
Sbjct: 105 DLLKCTKNQKLVTVVGAS-LPIPFGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKTQ 163
Query: 288 GLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXX 347
+ +F +K + F++DL++YLS +
Sbjct: 164 QFYY-NFGVKIASGTVPRSDFQDDLLEYLSMYR-----------NQLDTWKQLLQKVDFS 211
Query: 348 XAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQE-CTFEKGFK---KSPLVYQFSSLGSLD 403
+ RLI S PGYHT ++ GH +L +L E F+ ++ + V Q SS+GSL
Sbjct: 212 QISDRLIFSTPGYHTDPPTQRPGHPRLFRILSEKFPFDASYEHTERCTFVAQCSSIGSLG 271
Query: 404 EKWMAELXXXXXXXXXEDKTPLGIGEPL---IVWPTVEDVRCSLEGYAAGNAIPSPQK-N 459
+ E P +P +V+P+VEDVR S +GYA G ++P +
Sbjct: 272 SAPI-NWFRGQFLQSLEGANPSPKQKPAKMYLVFPSVEDVRTSCQGYAGGCSVPYRNSVH 330
Query: 460 VDKDFLKKYWAKWKASHTGRRYN 482
+ +L+ KW+ S+ RR N
Sbjct: 331 ARQKWLQGNMCKWR-SNAKRRTN 352
>ASPGD|ASPL0000004965 [details] [associations]
symbol:AN5903 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA
phosphodiesterase activity" evidence=IEA] [GO:0000012 "single
strand break repair" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 EMBL:BN001301 EMBL:AACD01000101
GO:GO:0008081 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 OrthoDB:EOG4KD9W6 RefSeq:XP_663507.1
EnsemblFungi:CADANIAT00007130 GeneID:2870818 KEGG:ani:AN5903.2
HOGENOM:HOG000163738 Uniprot:Q5B0M7
Length = 586
Score = 229 (85.7 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 95/341 (27%), Positives = 150/341 (43%)
Query: 177 NTSCVSIRDVIQGDIIVAIL--SNYMVDIDWLLPACPV-LAKIPHVLVIHGESDGTLEHM 233
N V +RD++ GD ++ NY D+D+L+ + + V V+HG E+
Sbjct: 95 NDDTVKLRDIL-GDPLIRECWQFNYCFDVDFLMDQFDEDVRNLVRVKVVHGSWKKDSENR 153
Query: 234 KR-NKPANWILHKPPL----PISFGTHHSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQ 287
R K + P+ P FGTHHSK M+L+ + ++++HTAN++ DW + Q
Sbjct: 154 VRIEKACQRYPNVEPIVAYMPEPFGTHHSKMMILLRHDDFAQVVIHTANMLAGDWGDMCQ 213
Query: 288 GLWMQDF-PL----KDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXX 340
+W PL +D+N+ + G F+ DL+ YL A+G
Sbjct: 214 AIWRSPLLPLTDGHEDKNSTAWGTGARFKRDLLAYLK------------AYGVKKTGPLV 261
Query: 341 XXXXXXXXAAVR--LIASVPGYHT-------GSSLKKWGH--MK--LRTV-LQECTFEKG 386
+AVR LIASVP G+S KWG +K LR V L+E G
Sbjct: 262 EQLGKYDFSAVRAALIASVPSKQKVDASSIDGNSKTKWGWPALKEALRNVPLRENVGADG 321
Query: 387 FKKSP-LVYQFSSLGSLDE--KWMAELXXXXXXXXXED-KTPLGIGEPLIVWPTVEDVRC 442
P +V Q SS+ +L + KW+ ++ KT +++PT E++R
Sbjct: 322 TATVPHIVTQISSIATLGQTDKWLKDVFFNALAASSSSTKTRPRYS---VIFPTAEEIRR 378
Query: 443 SLEGYAAGNAI----PSPQKNVDKDFLKKYWAKWKASHTGR 479
SL+GY G +I S + +L+ Y W +G+
Sbjct: 379 SLKGYGYGGSIHMKLQSAAQKKQLQYLRPYLCHWAGDVSGQ 419
>UNIPROTKB|H0YJ44 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000556063
Uniprot:H0YJ44
Length = 281
Score = 200 (75.5 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 52/137 (37%), Positives = 77/137 (56%)
Query: 363 GSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXX 417
GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 5 GSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTL 64
Query: 418 XXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKAS 475
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A
Sbjct: 65 GKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAE 124
Query: 476 HTGRRY---NIDLYLPP 489
+GR +I Y+ P
Sbjct: 125 TSGRSNAMPHIKTYMRP 141
>UNIPROTKB|G3V2U6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2U6 SMR:G3V2U6 Ensembl:ENST00000554180
ArrayExpress:G3V2U6 Bgee:G3V2U6 Uniprot:G3V2U6
Length = 279
Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 55/210 (26%), Positives = 100/210 (47%)
Query: 78 QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
+R+K S E + S +D ++ +P K V NDG +G +
Sbjct: 75 KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDK-LPSTFRLLRVQGLPAWANTSCVSIRDVI 187
++++++++ +G+ + DK P F L RV G+ N+ + I+D++
Sbjct: 135 CHRLKEEEDEYETSGEGQD-----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDIL 189
Query: 188 Q---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWI 242
G ++ + NY D+DWL+ P + +L++HG+ H+ KP N
Sbjct: 190 SPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENIS 249
Query: 243 LHKPPLPISFGTHHSKAMLLIYPRGVRIIV 272
L + L I+FGTHH+K MLL+Y G+R+++
Sbjct: 250 LCQAKLDIAFGTHHTKMMLLLYEEGLRVVI 279
>UNIPROTKB|H0YJL7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000557782 Bgee:H0YJL7
Uniprot:H0YJL7
Length = 51
Score = 159 (61.0 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 248 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQG 288
L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 3 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQG 43
>POMBASE|SPCP31B10.05 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase Tdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000012 "single strand
break repair" evidence=IMP] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 PomBase:SPCP31B10.05 GO:GO:0005634
EMBL:CU329672 GO:GO:0004527 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 PIR:T41695 RefSeq:NP_587861.1 HSSP:P38319
ProteinModelPortal:Q9USG9 STRING:Q9USG9 EnsemblFungi:SPCP31B10.05.1
GeneID:2539579 KEGG:spo:SPCP31B10.05 OrthoDB:EOG4KD9W6
NextBio:20800737 Uniprot:Q9USG9
Length = 536
Score = 132 (51.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 41/144 (28%), Positives = 70/144 (48%)
Query: 156 SRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILS-NYMVDIDWLLPA--CPV 212
S + + S L ++ LP N C+ ++ +I + N+ VD+++LL V
Sbjct: 16 SNEIIDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMHASV 75
Query: 213 LAKIPHVLVIHG---ESDGT--LEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPR- 266
+ V + HG +SD L + P N L+ +P+ +GTHHSK M+ +
Sbjct: 76 FPTVD-VRITHGYDSKSDSLARLTAQMNHCPVNVKLYSVYVPM-WGTHHSKIMVNFFKDD 133
Query: 267 GVRIIVHTANLIHVDWNNKSQGLW 290
+I++HTANL+ DW SQ ++
Sbjct: 134 SCQIVIHTANLVEPDWIGMSQAIF 157
Score = 86 (35.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 43/149 (28%), Positives = 69/149 (46%)
Query: 349 AAVR--LIASVPGYHTGSSLKKWGHMKLRTVLQ--ECTFEKG----FKKSPL-VYQFSSL 399
+A+R I SVPG G WG KL+ +L+ E +K F++S + + Q SS+
Sbjct: 257 SAIRAIFIGSVPGKFEGEEESSWGLGKLKKILKMLEKDSKKDEKTKFEESDICISQCSSM 316
Query: 400 GSLDEK--WMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI---- 453
GS K ++AEL D G ++PTV++V+ S+ G+ +G++I
Sbjct: 317 GSFGPKQEYIAELT---------DGFGCQRGNWKFLFPTVKEVQQSMLGWQSGSSIHFNI 367
Query: 454 --PSPQKNVDKDFLKKYWAKWKASHTGRR 480
+ V+ K KW A GR+
Sbjct: 368 LGKTAASQVETLKKGKNLCKWVAMKAGRQ 396
>DICTYBASE|DDB_G0273869 [details] [associations]
symbol:DDB_G0273869 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 133 (51.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 63/300 (21%), Positives = 125/300 (41%)
Query: 13 DNNLREDNSLPK-LPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPV 71
D++ ED L K + S G IG N +R HI ++S P
Sbjct: 69 DDDDTEDEDLQKAIAFSLGTTTIGNNN------NNNRSHILSMIRNKNNSS-------PP 115
Query: 72 VVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKK 131
++++ R + SN+ S + + ++F + + +N+ N ++K
Sbjct: 116 LLENSIDRNQFYSNKKSSSSYNNF-----NNNFNNNNNNNNNNNNNNNNNNNNNNNNNKN 170
Query: 132 MRQQDEQDNENGKNSEEA---LCNFHVSRDK----LPSTFRLLRVQGLPAWANTSCVSIR 184
+ +N N K+ +E+ + + +++ P++F L P + +S +
Sbjct: 171 NNSNNNNNNNNNKDKKESGTIIGGVLIDKNENYKFKPNSFYLNSTNEQPRICTINTLSFK 230
Query: 185 DVIQGDIIV-AILSNYMVDIDWLLPACPVLA--KIPHVLVIHGESDGTLEHMKRNKPANW 241
D+I+ +V A++S + +D +W++ K+ V + T N
Sbjct: 231 DLIKKPGMVGALVSGFALDPEWVIKEIRKEHGNKVKFTFVKNYSKPETKGRHAINDFITV 290
Query: 242 ILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNN 301
I PPL ++ +HSK M+ + VR+++ ++N D++ Q +W QDF K NN
Sbjct: 291 I--NPPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 350 AVRLIASVPGYH 361
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
>DICTYBASE|DDB_G0273125 [details] [associations]
symbol:DDB_G0273125 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 133 (51.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 63/300 (21%), Positives = 125/300 (41%)
Query: 13 DNNLREDNSLPK-LPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPV 71
D++ ED L K + S G IG N +R HI ++S P
Sbjct: 69 DDDDTEDEDLQKAIAFSLGTTTIGNNN------NNNRSHILSMIRNKNNSS-------PP 115
Query: 72 VVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKK 131
++++ R + SN+ S + + ++F + + +N+ N ++K
Sbjct: 116 LLENSIDRNQFYSNKKSSSSYNNF-----NNNFNNNNNNNNNNNNNNNNNNNNNNNNNKN 170
Query: 132 MRQQDEQDNENGKNSEEA---LCNFHVSRDK----LPSTFRLLRVQGLPAWANTSCVSIR 184
+ +N N K+ +E+ + + +++ P++F L P + +S +
Sbjct: 171 NNSNNNNNNNNNKDKKESGTIIGGVLIDKNENYKFKPNSFYLNSTNEQPRICTINTLSFK 230
Query: 185 DVIQGDIIV-AILSNYMVDIDWLLPACPVLA--KIPHVLVIHGESDGTLEHMKRNKPANW 241
D+I+ +V A++S + +D +W++ K+ V + T N
Sbjct: 231 DLIKKPGMVGALVSGFALDPEWVIKEIRKEHGNKVKFTFVKNYSKPETKGRHAINDFITV 290
Query: 242 ILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNN 301
I PPL ++ +HSK M+ + VR+++ ++N D++ Q +W QDF K NN
Sbjct: 291 I--NPPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 350 AVRLIASVPGYH 361
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 491 466 0.00097 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 623 (66 KB)
Total size of DFA: 315 KB (2160 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.72u 0.12s 40.84t Elapsed: 00:00:02
Total cpu time: 40.72u 0.12s 40.84t Elapsed: 00:00:02
Start: Thu May 9 15:16:30 2013 End: Thu May 9 15:16:32 2013