Query 011198
Match_columns 491
No_of_seqs 171 out of 321
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 4.5E-80 1.5E-84 656.6 18.9 328 145-483 3-347 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 6E-73 2.1E-77 609.2 11.6 306 159-483 77-430 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 100.0 7.1E-71 2.4E-75 584.0 15.5 302 162-483 3-353 (470)
4 2brf_A Bifunctional polynucleo 99.6 2E-16 6.9E-21 137.7 8.0 96 4-109 7-106 (110)
5 1ujx_A Polynucleotide kinase 3 99.6 1.2E-15 4E-20 134.5 8.9 97 4-110 14-114 (119)
6 1yj5_C 5' polynucleotide kinas 99.6 1.7E-15 5.9E-20 136.7 8.5 98 4-111 7-108 (143)
7 3kt9_A Aprataxin; FHA domain, 99.4 1.5E-13 5.2E-18 118.2 7.8 95 5-109 3-100 (102)
8 1lgp_A Cell cycle checkpoint p 98.0 7.5E-06 2.6E-10 70.7 6.6 90 4-101 2-96 (116)
9 1g6g_A Protein kinase RAD53; b 97.4 0.00018 6E-09 63.3 6.2 88 5-102 4-108 (127)
10 1gxc_A CHK2, CDS1, serine/thre 97.3 0.00045 1.5E-08 62.4 7.0 96 5-110 29-141 (149)
11 3va4_A Mediator of DNA damage 97.1 0.00054 1.8E-08 60.9 5.7 99 4-109 22-125 (132)
12 2jqj_A DNA damage response pro 97.0 0.00045 1.5E-08 62.5 4.2 97 4-110 16-124 (151)
13 1dmz_A Protein (protein kinase 96.9 0.0025 8.4E-08 58.2 8.0 96 7-110 6-123 (158)
14 2jpe_A Nuclear inhibitor of pr 96.7 0.003 1E-07 56.3 7.1 80 23-108 47-133 (140)
15 2xt9_B Putative signal transdu 96.6 0.0019 6.4E-08 55.6 5.1 79 22-110 23-105 (115)
16 1wln_A Afadin; beta sandwich, 96.6 0.0055 1.9E-07 53.1 7.8 97 4-108 9-112 (120)
17 3fm8_A Kinesin-like protein KI 96.6 0.0041 1.4E-07 54.8 6.9 93 6-107 26-121 (124)
18 1uht_A Expressed protein; FHA 96.5 0.0023 7.9E-08 55.2 4.7 92 6-108 12-109 (118)
19 2pie_A E3 ubiquitin-protein li 96.4 0.0064 2.2E-07 54.0 7.3 84 23-110 20-117 (138)
20 3po8_A RV0020C protein, putati 96.4 0.0034 1.2E-07 52.5 4.8 72 21-100 14-89 (100)
21 1qu5_A Protein kinase SPK1; FH 96.3 0.0062 2.1E-07 57.0 7.0 84 23-110 42-147 (182)
22 2csw_A Ubiquitin ligase protei 96.3 0.0083 2.9E-07 53.8 7.4 84 23-110 28-125 (145)
23 2kb3_A Oxoglutarate dehydrogen 96.3 0.0035 1.2E-07 56.4 4.8 79 22-110 58-140 (143)
24 1r21_A Antigen KI-67; beta san 96.3 0.0035 1.2E-07 54.8 4.8 93 6-110 12-108 (128)
25 1mzk_A Kinase associated prote 96.1 0.0068 2.3E-07 53.9 5.9 81 24-110 21-119 (139)
26 3gqs_A Adenylate cyclase-like 96.1 0.0055 1.9E-07 51.8 4.9 80 22-109 16-101 (106)
27 3oun_A Putative uncharacterize 96.1 0.0051 1.8E-07 56.4 4.8 72 20-99 75-150 (157)
28 1g3g_A Protien kinase SPK1; FH 96.0 0.004 1.4E-07 57.1 3.8 97 6-110 33-146 (164)
29 2kfu_A RV1827 PThr 22; FHA dom 96.0 0.0068 2.3E-07 55.8 5.1 77 23-109 68-148 (162)
30 4ejq_A Kinesin-like protein KI 95.6 0.017 5.7E-07 52.5 6.3 96 6-109 38-143 (154)
31 2ff4_A Probable regulatory pro 95.4 0.013 4.6E-07 60.1 5.1 79 23-110 299-381 (388)
32 3hx1_A SLR1951 protein; P74513 95.3 0.019 6.5E-07 50.7 5.2 89 23-119 23-124 (131)
33 4h87_A Kanadaptin; FHA domain 94.8 0.041 1.4E-06 48.5 6.0 83 22-110 32-129 (130)
34 3els_A PRE-mRNA leakage protei 94.7 0.03 1E-06 51.1 5.0 90 9-102 34-146 (158)
35 3i6u_A CDS1, serine/threonine- 93.9 0.046 1.6E-06 56.0 4.9 85 5-99 9-109 (419)
36 3elv_A PRE-mRNA leakage protei 93.2 0.11 3.7E-06 49.6 5.7 91 9-103 81-194 (205)
37 4egx_A Kinesin-like protein KI 91.0 0.45 1.5E-05 44.4 7.1 97 5-109 67-173 (184)
38 4a0e_A YSCD, type III secretio 84.1 0.74 2.5E-05 40.5 3.6 50 24-75 18-71 (123)
39 1byr_A Protein (endonuclease); 79.1 1.8 6.2E-05 37.4 4.3 40 251-293 89-129 (155)
40 3uv0_A Mutator 2, isoform B; F 61.3 8.2 0.00028 32.8 4.2 65 23-96 13-82 (102)
41 4ggj_A Mitochondrial cardiolip 57.5 7.7 0.00026 35.7 3.8 40 250-292 118-158 (196)
42 3huf_A DNA repair and telomere 53.3 13 0.00044 37.6 4.8 33 24-56 15-53 (325)
43 1v0w_A Phospholipase D; hydrol 45.3 17 0.00058 38.2 4.5 37 252-293 436-472 (506)
44 3hsi_A Phosphatidylserine synt 30.4 29 0.00098 36.4 3.3 40 251-293 359-399 (458)
45 2y0o_A Probable D-lyxose ketol 30.4 27 0.00093 32.2 2.7 44 59-103 89-136 (175)
46 1v0w_A Phospholipase D; hydrol 24.3 45 0.0015 34.9 3.5 32 251-285 162-193 (506)
47 2c1l_A Restriction endonucleas 23.1 55 0.0019 32.4 3.5 39 251-292 100-138 (358)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=4.5e-80 Score=656.56 Aligned_cols=328 Identities=34% Similarity=0.644 Sum_probs=278.9
Q ss_pred CCcccccccccCCCCCCCceEEEEecCCCCCCCCCceeechhccc---cHhhhhhhhcccCHhhhhccCCC-CCCCCeEE
Q 011198 145 NSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQG---DIIVAILSNYMVDIDWLLPACPV-LAKIPHVL 220 (491)
Q Consensus 145 ~~~~~~~~~~~~~~~~~s~FrLtrv~g~p~~~n~~~Isl~DlL~~---~L~~allfnF~~Dl~WLl~~~p~-~~~~p~v~ 220 (491)
..+|.+++|+......|.+|+||+|+|++.++|.++|+|+|||++ +|+.|++||||+|++|||++|+. ++++| |+
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~-v~ 81 (464)
T 1jy1_A 3 DPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP-IL 81 (464)
T ss_dssp CTTTTCCGGGTSCTTCSSCEEEBCCTTSCGGGGTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSC-EE
T ss_pred CcccccchhhhhcccCCceEEEEeecCCCcccCCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCc-EE
Confidence 457889999999988889999999999999999999999999984 69999999999999999999974 56675 78
Q ss_pred EEeCCCCchhhhh--hhcCCCceEEecCCCCCCCCCccceeEEEEeCCccEEEEeCCCCChhcccccCCeEEeec-cCCC
Q 011198 221 VIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLK 297 (491)
Q Consensus 221 Vvhge~~~~~~~~--~~~~~~n~~l~~ppmp~~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~~tQ~vWiqD-fP~~ 297 (491)
||||+++.....+ .....+||++|.|+||++|||||||||||+|+||||||||||||+++||+++||+||+|| ||++
T Consensus 82 iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~sd~lP~~ 161 (464)
T 1jy1_A 82 LVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRI 161 (464)
T ss_dssp EEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEECCCBCBC
T ss_pred EEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEecccCcCC
Confidence 8899865432222 224567999999999999999999999999999999999999999999999999999999 7987
Q ss_pred CCCC---CCCCCChHHHHHHHHHhCCCCccccCCCCCCCcccCccccccccccccceEEEEecCCCccCCCcchhcHHHH
Q 011198 298 DQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKL 374 (491)
Q Consensus 298 ~~~s---~~~~s~Fk~dL~~YL~ay~~p~~~~~~p~lg~~~i~~~~L~~yDFS~a~v~LVaSVPG~H~g~~~~~~Gh~rL 374 (491)
+... .+++++|++||++||++|+++.... +++.|++||||.++|+||+||||+|.|.++.+|||++|
T Consensus 162 ~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~~G~~~L 231 (464)
T 1jy1_A 162 ADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRL 231 (464)
T ss_dssp CTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGGSHHHHH
T ss_pred CccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchhhhHHHH
Confidence 5433 3678999999999999999864322 26889999999999999999999999999999999999
Q ss_pred HHHHHhccccCC-CCccCEEEEecCCCcCC---hhHH-HHHHHhccCCCCCCCCC-CCCCCCEEEcCChhhHhcCccCcc
Q 011198 375 RTVLQECTFEKG-FKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRCSLEGYA 448 (491)
Q Consensus 375 ~~vLk~~~~~~~-~~~~~iv~Q~SSIGSl~---~~WL-~ef~~sl~~~~~~~~~~-~~~~~~~IIFPTveeVr~S~~G~~ 448 (491)
+++|+++++..+ .+.++|+||+||||+|+ .+|| ++|+.+|++...+.+.+ ...++++|||||+||||+|.+||.
T Consensus 232 ~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~ 311 (464)
T 1jy1_A 232 KKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYP 311 (464)
T ss_dssp HHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHTSSSCGG
T ss_pred HHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHhcccccC
Confidence 999999876432 35789999999999998 4899 68999998753222111 124679999999999999999999
Q ss_pred CCccccCccccch-HHhHHHHhccccCCCcCCccCC
Q 011198 449 AGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRRYNI 483 (491)
Q Consensus 449 ~GGsip~~~~~~~-~~~l~~~l~kW~a~~~gR~~~~ 483 (491)
+||||||+.++++ ++||++|||+|+++..||.+++
T Consensus 312 ~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~ 347 (464)
T 1jy1_A 312 AGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAM 347 (464)
T ss_dssp GGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSC
T ss_pred CcceeeccchhhhhhhhhHHHHHHhccCccCCCCcC
Confidence 9999999866554 5799999999999999998865
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=6e-73 Score=609.19 Aligned_cols=306 Identities=15% Similarity=0.209 Sum_probs=240.3
Q ss_pred CCCCceEEEEecCCCCC----CCCCceeechhccc-cHhhhhhhhcccCHhhhhccCCCCCCCCeEEEEeCCCCc---hh
Q 011198 159 KLPSTFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG---TL 230 (491)
Q Consensus 159 ~~~s~FrLtrv~g~p~~----~n~~~Isl~DlL~~-~L~~allfnF~~Dl~WLl~~~p~~~~~p~v~Vvhge~~~---~~ 230 (491)
.+++||||+++++++.+ +|.++|+|+|||++ +|+.|++||||+|++|||++|+.. +..|+||||+... ..
T Consensus 77 ~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~~~l~~a~~~nF~~Di~WLl~~~~~~--~~~v~iv~g~~~~~~~~r 154 (544)
T 1q32_A 77 AKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEA 154 (544)
T ss_dssp --CCEEEEECCTTTTCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTCEECCCG
T ss_pred CCCCCeEEEEecccCcccccCCCCCceeHHHHcCCchHHHHHHHHHHHhHHHHHhhCccc--CCcEEEEecCCcCCchhh
Confidence 37789999999998875 58999999999986 799999999999999999999852 2268888887541 11
Q ss_pred -h--hhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCChhcccccCCeEEeeccCCCCCCCCCCCC
Q 011198 231 -E--HMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEEC 306 (491)
Q Consensus 231 -~--~~~~~~~~n~~l~~ppmp~~fGtHHSKmmLL~Y~dg-lRVVI~TANLi~~DW~~~tQ~vWiqDfP~~~~~s~~~~s 306 (491)
+ ...+...+||++|+|+||. |||||||||||+|+|| ||||||||||+++||+++||+||+|||+.+. +.+.++
T Consensus 155 ~~~~~~~~~~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ~vW~sp~lp~~--s~g~~~ 231 (544)
T 1q32_A 155 RAMDATLAVILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIG--KEGLPV 231 (544)
T ss_dssp GGCCHHHHHHHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEEEECCCEEEC--CCSSCC
T ss_pred hhhhHHhhccCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEEeCCCCChHHhccccceEEECCccccc--CCCCCC
Confidence 1 1111225699999999998 9999999999999998 9999999999999999999999999964332 234579
Q ss_pred ChHHHHHHHHHhCCCCccccCCCCCCCcccCcccccccccccc-ceEEEEecCCCccCCCcchhcHHHHHHHHHhcc--c
Q 011198 307 GFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECT--F 383 (491)
Q Consensus 307 ~Fk~dL~~YL~ay~~p~~~~~~p~lg~~~i~~~~L~~yDFS~a-~v~LVaSVPG~H~g~~~~~~Gh~rL~~vLk~~~--~ 383 (491)
+|+.||++||++|+++.+..+ | ++.|++||||.+ +|+||+||||+|.| |||++|+++|++++ +
T Consensus 232 ~Fk~dL~~yL~ay~~~~l~~~--------i-i~~l~~~DFS~~~~v~lV~SvPG~h~~-----~G~~~L~~~L~~~~~~~ 297 (544)
T 1q32_A 232 PFKRSLIEYLNSYHLKDIDEL--------I-TKSVEEVNFAPLSELEFVYSTPSKFQS-----SGLLSFYNKLEKLSAGT 297 (544)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH--------T-HHHHHTEECGGGTTCEEEEECCCTTSC-----CHHHHHHHHHHHTC---
T ss_pred chHHHHHHHHHHcCCcccchH--------H-HHHHHhcCcccCCceEEEEecCCccCC-----ccHHHHHHHHHHhhccC
Confidence 999999999999998643211 1 588999999999 99999999999998 69999999999987 4
Q ss_pred cCCCCccCEEEEecCCCc-CC-hhHHHHHHHhccC--------CCCC-CCCCC---------------CCCCCEEEcCCh
Q 011198 384 EKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS--------GFSE-DKTPL---------------GIGEPLIVWPTV 437 (491)
Q Consensus 384 ~~~~~~~~iv~Q~SSIGS-l~-~~WL~ef~~sl~~--------~~~~-~~~~~---------------~~~~~~IIFPTv 437 (491)
....+.++|+||+||||+ ++ ++||++|..+|+. +... ...+. ...+++|||||+
T Consensus 298 ~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~ 377 (544)
T 1q32_A 298 SASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTE 377 (544)
T ss_dssp ---CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHHTEEEEEECCBS
T ss_pred CCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCcccccccccccccccchhcccccccCCCceEEcCCH
Confidence 444456899999999999 76 6898777655432 1111 10000 035789999999
Q ss_pred hhHhcCccCccCCccccCccc---cchHHhHHHHhccccC----CCcCCccCC
Q 011198 438 EDVRCSLEGYAAGNAIPSPQK---NVDKDFLKKYWAKWKA----SHTGRRYNI 483 (491)
Q Consensus 438 eeVr~S~~G~~~GGsip~~~~---~~~~~~l~~~l~kW~a----~~~gR~~~~ 483 (491)
||||+|.+||.+||||||+.+ +.+++|+++++|+|++ ...||.+++
T Consensus 378 e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~s~R~~a~ 430 (544)
T 1q32_A 378 QEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTP 430 (544)
T ss_dssp GGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCC
T ss_pred HHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCccccCCCCCcc
Confidence 999999999999999998533 2356899999999998 566887764
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=7.1e-71 Score=583.97 Aligned_cols=302 Identities=16% Similarity=0.260 Sum_probs=238.6
Q ss_pred CceEEEEecCCCCC----CCCCceeechhccc-cHhhhhhhhcccCHhhhhccCCCCCCCCeEEEEeCCCCc---hh---
Q 011198 162 STFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG---TL--- 230 (491)
Q Consensus 162 s~FrLtrv~g~p~~----~n~~~Isl~DlL~~-~L~~allfnF~~Dl~WLl~~~p~~~~~p~v~Vvhge~~~---~~--- 230 (491)
.+|||+|+++++.+ .|.++|+|+|||++ +|+.|++||||+|++|||++|+.. +..|+||+++.+. +.
T Consensus 3 ~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~~L~~avlfnF~~Di~WLl~~~~~~--~~~v~iv~~~g~~~~~~~~~~ 80 (470)
T 3sq7_A 3 AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAM 80 (470)
T ss_dssp CEEEEECCTTTSCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTSEECCCGGGC
T ss_pred CceEEEeecCcCccccccCCCCceeHHHhcCCchHHHHHhhhhhhcHHHHHhhCccc--cCceEEEEeCCcccccchhhh
Confidence 57999999999976 68899999999987 799999999999999999999853 3356666643321 11
Q ss_pred -hhhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCChhcccccCCeEEeeccCCCCCCCCCCCCCh
Q 011198 231 -EHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGF 308 (491)
Q Consensus 231 -~~~~~~~~~n~~l~~ppmp~~fGtHHSKmmLL~Y~dg-lRVVI~TANLi~~DW~~~tQ~vWiqDfP~~~~~s~~~~s~F 308 (491)
+.+.+ ..+|+++|.|+|| +|||||||||||+|+|| ||||||||||+++||+..||+|| |||++.......+++|
T Consensus 81 ~~~~~~-~~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P~l~~~~~~~~s~F 156 (470)
T 3sq7_A 81 DATLAV-ILKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSPLLKIGKEGLPVPF 156 (470)
T ss_dssp CHHHHH-HHTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECCCEEECCCCSCCHH
T ss_pred hHHHHh-hcCCceEEecCCC-CcCCccceeEEEEecCCCEEEEEecCCCChhhhcccceEEE--EccCCcCCCCCCCCcc
Confidence 11222 2358999999999 99999999999999998 99999999999999999999999 5565542223456799
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCcccCcccccccccccc-ceEEEEecCCCccCCCcchhcHHHHHHHHHhccccC--
Q 011198 309 ENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK-- 385 (491)
Q Consensus 309 k~dL~~YL~ay~~p~~~~~~p~lg~~~i~~~~L~~yDFS~a-~v~LVaSVPG~H~g~~~~~~Gh~rL~~vLk~~~~~~-- 385 (491)
++||++||++|+.+.+. ..+++.|++||||.+ +|+||+||||+|. .|||++|+++|+++++..
T Consensus 157 k~dL~~yL~~y~~~~l~---------~~~i~~l~~~DFS~~~~v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~ 222 (470)
T 3sq7_A 157 KRSLIEYLNSYHLKDID---------ELITKSVEEVNFAPLSELEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSA 222 (470)
T ss_dssp HHHHHHHHHTTCCHHHH---------HHTHHHHHTEECGGGTTCEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhCCchhH---------HHHHHHHHhCCCCCCCcEEEEEecCCCCc-----cchHHHHHHHHHHhccCCCc
Confidence 99999999999987531 123688999999999 5999999999984 599999999999988643
Q ss_pred CCCccCEEEEecCCCc-CCh----hHHHH-HHHhccCCCCC------CC----CCC----------CCCCCEEEcCChhh
Q 011198 386 GFKKSPLVYQFSSLGS-LDE----KWMAE-LSSSMSSGFSE------DK----TPL----------GIGEPLIVWPTVED 439 (491)
Q Consensus 386 ~~~~~~iv~Q~SSIGS-l~~----~WL~e-f~~sl~~~~~~------~~----~~~----------~~~~~~IIFPTvee 439 (491)
..++++|+||+||||+ |+. +||++ |+.+|++.... ++ .+. ...+++||||||||
T Consensus 223 ~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTvee 302 (470)
T 3sq7_A 223 SDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQE 302 (470)
T ss_dssp CSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHTTEEEEEECCBTGG
T ss_pred ccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCccccccccccccccCCccchhhhhccCCCCeEEEcCCHHH
Confidence 3457899999999998 984 68875 66677754221 01 110 13468999999999
Q ss_pred HhcCccCccCCccccCccccch-H-HhHH---HHhccccCC--CcCCccCC
Q 011198 440 VRCSLEGYAAGNAIPSPQKNVD-K-DFLK---KYWAKWKAS--HTGRRYNI 483 (491)
Q Consensus 440 Vr~S~~G~~~GGsip~~~~~~~-~-~~l~---~~l~kW~a~--~~gR~~~~ 483 (491)
||+|.+||++||||||+.++.+ | +||+ +|||||+++ +.||++++
T Consensus 303 Vr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~~~~R~~a~ 353 (470)
T 3sq7_A 303 FVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTP 353 (470)
T ss_dssp GTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCC
T ss_pred HhcCccccccCceeeecccchHHHHHHHhcccceEecccCcCCCCCCCCcC
Confidence 9999999999999999966553 3 7998 899999987 45777654
No 4
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.65 E-value=2e-16 Score=137.73 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=87.2
Q ss_pred cceeeeeeCCCCccCCCCCCcccCC--CCCccccCCCcc-ccccccccceeEEEecCC-ccEEEEEecCCceEeecCCcc
Q 011198 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNIP-VSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (491)
..+.+|+|++.+ .|.|+|+ .|+++|||+... +.|||+||+|+.|+++.+ |.+.+...|+||.++++
T Consensus 7 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGR~p~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng---- 76 (110)
T 2brf_A 7 PGRLWLESPPGE------APPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGT---- 76 (110)
T ss_dssp -CEEEEECSTTS------SCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-----
T ss_pred CcEEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccceeeeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 458899998743 7899996 799999999987 999999999999999886 89999999999999997
Q ss_pred cccccccccccccCCcccccCCCccceeee
Q 011198 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (491)
Q Consensus 80 ~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (491)
++|..++++++.+||++||.||.|+|+++-
T Consensus 77 ~~l~k~~~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 77 QELKPGLEGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CBCCTTCEEEEETTCEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEecCCCEEEEccCCeEEEEEe
Confidence 899999999999999999999999999886
No 5
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.61 E-value=1.2e-15 Score=134.52 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=88.7
Q ss_pred cceeeeeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-ccEEEEEecCCceEeecCCcc
Q 011198 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (491)
..+-+|+|++.+ .|.|+|+ .|+++|||+.. .+.|||+||+|+.|+++.+ |.+.+...|+||.+|++
T Consensus 14 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGRgp~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng---- 83 (119)
T 1ujx_A 14 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 83 (119)
T ss_dssp CCCEEEECCSSS------CCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSS----
T ss_pred cceEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 347889998743 7899996 79999999998 8999999999999999886 99999999999999986
Q ss_pred cccccccccccccCCcccccCCCccceeeee
Q 011198 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (491)
Q Consensus 80 ~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (491)
++|..++++++.+||++||.||.|+|+++..
T Consensus 84 ~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f~ 114 (119)
T 1ujx_A 84 QELKPGLSGSLSLGDVLYLVNGLYPLTLRWS 114 (119)
T ss_dssp SBCCTTCEEEEETTCCCBCBTTBSCCEEEEC
T ss_pred EEecCCCEEEecCCCEEEEecCCeEEEEEec
Confidence 8999999999999999999999999999876
No 6
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.59 E-value=1.7e-15 Score=136.71 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=89.9
Q ss_pred cceeeeeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-ccEEEEEecCCceEeecCCcc
Q 011198 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (491)
.++.||+|++.+ .|.|.|+ .|+++|||+.. .+.|||+||+|+.|+++.+ |.+.+...|+||.+|++
T Consensus 7 ~~~c~L~p~d~~------~~~I~Lp~~~g~vvIGRgPet~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng---- 76 (143)
T 1yj5_C 7 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 76 (143)
T ss_dssp CEEEEEECCTTS------CCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETT----
T ss_pred CCeEEEEecCCC------CCcEEeccCCCCEEEcCCCccccccccccceeEEEEEecCCCeEEEEEcccCCcEECC----
Confidence 458899998743 7899996 79999999998 8999999999999999886 99999999999999986
Q ss_pred cccccccccccccCCcccccCCCccceeeeec
Q 011198 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVTLS 111 (491)
Q Consensus 80 ~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 111 (491)
++|..++++++.+||++||.||.|+|+++.+.
T Consensus 77 ~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~e 108 (143)
T 1yj5_C 77 HELKPGLSGSLSLGDVLYLVNGLYPLTLRWEE 108 (143)
T ss_dssp EECCTTCEEEECTTCEEESSSSCSEEEEEEEE
T ss_pred EEecCCCEEEecCCCEEEEecCCceEEEEecC
Confidence 89999999999999999999999999999863
No 7
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.44 E-value=1.5e-13 Score=118.23 Aligned_cols=95 Identities=22% Similarity=0.385 Sum_probs=85.0
Q ss_pred ceeeeeeCCCCccCCCCCCcccCCCCCcc-ccCCCc-cccccccccceeEEEecC-CccEEEEEecCCceEeecCCcccc
Q 011198 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNV-IGRTNI-PVSDKRLSRKHITLTASA-DGSASLVVDGTNPVVVKSGDQRKK 81 (491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k 81 (491)
+.-||+|.+ ++.|.|.|+.|.+| |||+.. .+.|||.||+|..|+++. +|.+.|...|+||..|+. ++
T Consensus 3 ~~c~L~~~~------~~~~~I~L~~g~~v~iGR~p~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng----~~ 72 (102)
T 3kt9_A 3 RVCWLVRQD------SRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDS----VV 72 (102)
T ss_dssp CEEEEEETT------STTCEEECCBTCEEEECSSTTTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETT----EE
T ss_pred ceEEEEecC------CCCCcEEcCCCCcEEeccCCccccccCcccCcceEEEEecCCCEEEEEECcCCCCeECC----EE
Confidence 456888864 55899999999997 599988 799999999999999998 478899999999999953 79
Q ss_pred cccccccccccCCcccccCCCccceeee
Q 011198 82 LSSNEHVSIADGDIIELIPGHHFFKYVT 109 (491)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (491)
+..++.+.+.+||++||.||.|+|+.+.
T Consensus 73 l~k~~~~~L~~GD~l~Ll~~~~~~~v~f 100 (102)
T 3kt9_A 73 IGKDQEVKLQPGQVLHMVNELYPYIVEF 100 (102)
T ss_dssp CCBTCEEEECTTCCEEEETTEEEEEEEE
T ss_pred cCCCCeEEeCCCCEEEEccCCceEEEEe
Confidence 9999999999999999999999998765
No 8
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=98.02 E-value=7.5e-06 Score=70.71 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=73.7
Q ss_pred cceeeeeeCCCCccCCCCCCcccCCCCCccccCC---Ccccccc-ccccceeEEEecC-CccEEEEEecCCceEeecCCc
Q 011198 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDK-RLSRKHITLTASA-DGSASLVVDGTNPVVVKSGDQ 78 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (491)
...|+|+|++.+. ..+.++|..+..+|||+ +|++.|. .+||+|..|.... +|.+.|.-..+|.+.|+.
T Consensus 2 ~~wg~L~~~~~~~----~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng--- 74 (116)
T 1lgp_A 2 QPWGRLLRLGAEE----GEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINK--- 74 (116)
T ss_dssp CCCEEECCTTCCS----SSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCC---
T ss_pred CCEEEEEEeCCCC----CccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECC---
Confidence 4689999997643 24678999999999995 5888775 8999999999984 888888877789998873
Q ss_pred ccccccccccccccCCcccccCC
Q 011198 79 RKKLSSNEHVSIADGDIIELIPG 101 (491)
Q Consensus 79 ~~k~~~~~~~~i~~~~~~~~~~~ 101 (491)
+++..++.+.+.+||+|.+-..
T Consensus 75 -~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 75 -LKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp -CCCCCSSCCCCCTTCEEEEECC
T ss_pred -EEcCCCCcEECCCCCEEEEecc
Confidence 3677777888999999998764
No 9
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=97.44 E-value=0.00018 Score=63.25 Aligned_cols=88 Identities=24% Similarity=0.296 Sum_probs=70.5
Q ss_pred ceeeeeeCCCCccCCCCCCcccCCCC-------------CccccCC---Ccccccc-ccccceeEEEecCCccEEEEEec
Q 011198 5 KIGYLVPLDNNLREDNSLPKLPLSQG-------------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDG 67 (491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 67 (491)
.++.|++.+.. .|.+.|... ..+|||+ +|++.|. ++||+|..|....+|.+.|.--.
T Consensus 4 ~~~~L~~~~~~------~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g~~~l~DlS 77 (127)
T 1g6g_A 4 IVCRVICTTGQ------IPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDIS 77 (127)
T ss_dssp EEEEEEESSSS------SCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTSCEEEEECC
T ss_pred eEEEEEECCCC------CCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCCcEEEEECC
Confidence 57888887654 566666544 8999994 7888886 79999999999778888887779
Q ss_pred CCceEeecCCcccccccccccccccCCcccccCCC
Q 011198 68 TNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (491)
Q Consensus 68 ~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~~~~~ 102 (491)
+|...|+. +++..++.+.+.+||+|.+-...
T Consensus 78 ~NGT~vNg----~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 78 TNGTWLNG----QKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp SSCCEETT----EECCTTCCEECCTTCEEEECTTS
T ss_pred cCCeEECC----EEcCCCCeEEcCCCCEEEECCCc
Confidence 99999963 56777778889999999996654
No 10
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=97.27 E-value=0.00045 Score=62.41 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=74.5
Q ss_pred ceeeeeeCCCCccCCCCCCcccCCCCCccccCC---Cccccccc---------cccceeEEEecCCc----cEEEEEecC
Q 011198 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKR---------LSRKHITLTASADG----SASLVVDGT 68 (491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~ 68 (491)
..|.|++++.. .+.++|..+..+|||+ +|++.|.. +||+|.+|....++ .+.|.=-.+
T Consensus 29 ~w~~L~~~~~~------~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~St 102 (149)
T 1gxc_A 29 PWARLWALQDG------FANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 102 (149)
T ss_dssp CCEEEEECSTT------CCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCS
T ss_pred eeEEEEEcCCC------CceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCC
Confidence 47899998743 4569999999999995 67888875 99999999988764 555655588
Q ss_pred CceEeecCCcccccccccccccccCCcccccCCC-ccceeeee
Q 011198 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH-HFFKYVTL 110 (491)
Q Consensus 69 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 110 (491)
|-..|+. +++.++.++.+.+||+|.|-... ..|.|+.+
T Consensus 103 NGT~VNg----~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 103 NGTFVNT----ELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp SCEEETT----EECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred CCeEECC----EECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 9888862 47777888899999999997653 34555554
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=97.11 E-value=0.00054 Score=60.95 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=73.7
Q ss_pred cceeeeeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecC-CccEEEEE-ecCCceEeecCCc
Q 011198 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASA-DGSASLVV-DGTNPVVVKSGDQ 78 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 78 (491)
.++|.|+-+.... ..--.++|..|..+||| ++|++.|..+||.|..|.... ++...|.= ..+|...|+ ++
T Consensus 22 ~p~g~L~v~~g~~---~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vN--g~ 96 (132)
T 3va4_A 22 EPIGQLRLFSGTH---GPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIV--KP 96 (132)
T ss_dssp CCSEEEEECCBTT---BSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEET--TT
T ss_pred CCcEEEEEEeCCC---CCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEEC--CE
Confidence 4578888775443 12346888999999999 469999999999999999874 56555543 368999885 44
Q ss_pred ccccccccccccccCCcccccCCCccceeee
Q 011198 79 RKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (491)
Q Consensus 79 ~~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (491)
|-.|.+++.+.+.+||+|.+ |..-+.|..
T Consensus 97 ~i~l~~~~~~~L~~GD~I~l--G~~~l~f~~ 125 (132)
T 3va4_A 97 PRVLPPGVSHRLRDQELILF--ADFPCQYHR 125 (132)
T ss_dssp TEEECTTCCEECCTTCEEEE--TTEEEEEEE
T ss_pred EcccCCCCEEECCCCCEEEE--CCEEEEEEE
Confidence 44578888889999999987 555555544
No 12
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=97.00 E-value=0.00045 Score=62.46 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=72.7
Q ss_pred cceeeeeeCCCCccCCCCCCcccCCC-CCccccC---CCccccccccccceeEEEec-------CCccEEEEEecCCceE
Q 011198 4 TKIGYLVPLDNNLREDNSLPKLPLSQ-GPNVIGR---TNIPVSDKRLSRKHITLTAS-------ADGSASLVVDGTNPVV 72 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 72 (491)
...|.|+.+.++. -..++|.. +..+||| ++|++.|..+||+|.+|... .+|.+.|.--.+|.+.
T Consensus 16 ~~~~~L~~~~~~~-----g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~ 90 (151)
T 2jqj_A 16 TCLGHLVNLIPGK-----EQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTF 90 (151)
T ss_dssp CEEEEEEEEETTE-----EEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEE
T ss_pred CceEEEEEecCCC-----ceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeE
Confidence 3578999887643 34678875 8999999 57999999999999999983 4566666656899999
Q ss_pred eecCCcccccccccccccccCCcccccCC-Cccceeeee
Q 011198 73 VKSGDQRKKLSSNEHVSIADGDIIELIPG-HHFFKYVTL 110 (491)
Q Consensus 73 ~~~~~~~~k~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~ 110 (491)
|+ | +++..+ .+.+.+||+|.|-.. .+-|+++..
T Consensus 91 VN--g--~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~~ 124 (151)
T 2jqj_A 91 IN--G--NRLVKK-DYILKNGDRIVFGKSCSFLFKYASS 124 (151)
T ss_dssp ET--T--EECCSS-CEEECSSEEEEETTTEEEEEEECSS
T ss_pred EC--C--EEcCCC-ceECCCCCEEEECCCcEEEEEEcCC
Confidence 97 2 356555 678999999999663 344554433
No 13
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=96.87 E-value=0.0025 Score=58.22 Aligned_cols=96 Identities=24% Similarity=0.326 Sum_probs=71.5
Q ss_pred eeeeeCCCCccCCCCCCcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------ccEEEEEec
Q 011198 7 GYLVPLDNNLREDNSLPKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVDG 67 (491)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~ 67 (491)
-.|.|+..... -..|+|.+|. .+|||+ +|++.|..+||.|..|.... + |.+.|.=-.
T Consensus 6 l~L~p~~~~~~----~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlS 81 (158)
T 1dmz_A 6 LTLKPLPDSII----QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTG 81 (158)
T ss_dssp EEEEECTTSSC----CCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECS
T ss_pred EEEEeCCCCcc----ceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECC
Confidence 45677765442 2578888887 999997 68999999999999998754 1 444444448
Q ss_pred CCceEeecCCcccccccccccccccCCcccc---cCCCccceeeee
Q 011198 68 TNPVVVKSGDQRKKLSSNEHVSIADGDIIEL---IPGHHFFKYVTL 110 (491)
Q Consensus 68 ~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~ 110 (491)
+|...|+. +++..+..+.+.+||+|.+ ..|...+.|...
T Consensus 82 tNGT~VNg----~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~ 123 (158)
T 1dmz_A 82 TNVSYLNN----NRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVE 123 (158)
T ss_dssp TTCCEETT----EECCSSEEEECCSSCCEESCCCTTTTCCCCEEEE
T ss_pred cCCeEECC----EEcCCCceEEcCCCCEEEEeecCCCCEEEEEEEE
Confidence 89988872 4677777788999999999 557666666654
No 14
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=96.71 E-value=0.003 Score=56.25 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=61.8
Q ss_pred CcccCCCCC-ccccC----CCccccccccccceeEEEecC-CccEEEEE-ecCCceEeecCCcccccccccccccccCCc
Q 011198 23 PKLPLSQGP-NVIGR----TNIPVSDKRLSRKHITLTASA-DGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (491)
Q Consensus 23 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~i~~~~~ 95 (491)
..++|..+. .+||| ++|++.|..+||+|.+|.... +|.+.|.= ..+|-..|+. +++.++..+.+.+||+
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg----~~l~~~~~~~L~~gd~ 122 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGH----IRLEPHKPQQIPIDST 122 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSS----CEECSSSCCEECTTCC
T ss_pred eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECC----EECCCCccEECCCCCE
Confidence 467888875 99999 468999999999999999887 46665554 4789998862 4577778888999999
Q ss_pred ccccCCCccceee
Q 011198 96 IELIPGHHFFKYV 108 (491)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (491)
|.+ |...+.|.
T Consensus 123 i~~--G~~~~~f~ 133 (140)
T 2jpe_A 123 VSF--GASTRAYT 133 (140)
T ss_dssp BBC--SSCCCCBC
T ss_pred EEE--CCceEEEE
Confidence 998 44444443
No 15
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=96.64 E-value=0.0019 Score=55.60 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=60.1
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccCCccc
Q 011198 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (491)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~ 97 (491)
-..++|..+..+|||. +|++.|..+||+|.+|... +|.+.|.=- .+|...|+ ++ ++. .+.+.+||+|.
T Consensus 23 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~--~i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 23 GSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE-GGEFQVVDVGSLNGTYVN--RE--PVD---SAVLANGDEVQ 94 (115)
T ss_dssp TCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE-TTEEEEEECSCSSCEEET--TE--ECS---EEEECTTCEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE-CCEEEEEECCCCCCeEEC--CE--Ecc---eEECCCCCEEE
Confidence 4568888999999996 7999999999999999987 566656554 59999886 33 333 46799999999
Q ss_pred ccCCCccceeeee
Q 011198 98 LIPGHHFFKYVTL 110 (491)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (491)
+ |..-+.|...
T Consensus 95 i--G~~~l~~~~~ 105 (115)
T 2xt9_B 95 I--GKFRLVFLTG 105 (115)
T ss_dssp E--TTEEEEEEC-
T ss_pred E--CCEEEEEEeC
Confidence 8 5555555543
No 16
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=96.59 E-value=0.0055 Score=53.11 Aligned_cols=97 Identities=24% Similarity=0.359 Sum_probs=70.6
Q ss_pred cceeeeeeCCCCccCC-CCCCcccCCCCCccccC-----CCccccccccccceeEEEecCCccEEEEEec-CCceEeecC
Q 011198 4 TKIGYLVPLDNNLRED-NSLPKLPLSQGPNVIGR-----TNIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSG 76 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (491)
....|||-|+.+-... ...-.++|..|..+||| ++|++.|..+||.|..|+.. +|.+.|.-.| +|.+.|+
T Consensus 9 ~~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~-~~~~~l~dl~S~ngt~vN-- 85 (120)
T 1wln_A 9 EKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM-DGVVTVTPRSMDAETYVD-- 85 (120)
T ss_dssp GGCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES-SSCEEEEESCSSSCEEET--
T ss_pred CCcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc-CCEEEEEECCCCCCEEEC--
Confidence 4567899887643221 11346889999999996 38999999999999999986 7777787776 8999885
Q ss_pred CcccccccccccccccCCcccccCCCccceee
Q 011198 77 DQRKKLSSNEHVSIADGDIIELIPGHHFFKYV 108 (491)
Q Consensus 77 ~~~~k~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (491)
|+| +. +.+.+.+||.|.+=.. ..|+|.
T Consensus 86 g~~--i~--~~~~L~~GD~I~iG~~-~~~~f~ 112 (120)
T 1wln_A 86 GQR--IS--ETTMLQSGMRLQFGTS-HVFKFV 112 (120)
T ss_dssp SCB--CS--SCEEECTTCEEEETTT-EEEEEE
T ss_pred CEE--cC--CCEECCCCCEEEECCc-eEEEEE
Confidence 332 32 3457899999988442 455654
No 17
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=96.58 E-value=0.0041 Score=54.83 Aligned_cols=93 Identities=20% Similarity=0.336 Sum_probs=69.5
Q ss_pred eeeeeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecCCccEEEEEecCCceEeecCCccccc
Q 011198 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKL 82 (491)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 82 (491)
.-|||=|+++..... .--.+|.+| .+||| ++|++.|..+||+|-.++...+|.+.|.-.++|.+.|+- +| +
T Consensus 26 ~PhLvnLn~Dp~~s~-~l~y~L~~~-t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VNG--~~--V 99 (124)
T 3fm8_A 26 KCFLVNLNADPALNE-LLVYYLKEH-TLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNG--SS--V 99 (124)
T ss_dssp -CEEEETTCCTTSSC-CCEEECCSE-EEEESSTTCSEECCSTTCCSSCEEEEECTTSCEEEEECTTCCEEETT--EE--C
T ss_pred ccEEEEeCCCCccCc-eEEEECCCC-eEECCCCCCCEEECCCCeecceEEEEECCCCeEEEEECCCCCEEECC--EE--c
Confidence 458898888764333 334566676 89999 579999999999999999877899999888999998863 32 2
Q ss_pred ccccccccccCCcccccCCCcccee
Q 011198 83 SSNEHVSIADGDIIELIPGHHFFKY 107 (491)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~ 107 (491)
. +.+...+||.|.+=.. ++|+|
T Consensus 100 ~--~~~~L~~GD~I~lG~~-~~FrF 121 (124)
T 3fm8_A 100 S--SPIQLHHGDRILWGNN-HFFRL 121 (124)
T ss_dssp C--SCEEECTTCEEEETTT-EEEEE
T ss_pred C--CcEECCCCCEEEECCC-eEEEE
Confidence 2 3566889999887543 45555
No 18
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=96.51 E-value=0.0023 Score=55.16 Aligned_cols=92 Identities=25% Similarity=0.339 Sum_probs=65.5
Q ss_pred eeeeeeCCCCccCCCCCCcccCCCCC-ccccCC----CccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcc
Q 011198 6 IGYLVPLDNNLREDNSLPKLPLSQGP-NVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQR 79 (491)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (491)
...|+-++.... --.++|..|. -+|||. +|.+.|..+||+|.+|+.. +|.+.|.-- .+|...|+.
T Consensus 12 ~l~L~v~~g~~~----g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGT~vng---- 82 (118)
T 1uht_A 12 SLRLVFVKGPRE----GDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD-SGNWVIQDLGSSNGTLLNS---- 82 (118)
T ss_dssp EEEEEESSSTTT----TCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC-SSSEEEECCCCSSCCEESS----
T ss_pred eEEEEEEeCCCC----CcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE-CCEEEEEECCCCCCeEECC----
Confidence 345555543321 2367888774 689997 7899999999999999986 455656655 499998862
Q ss_pred cccccccccccccCCcccccCCCccceee
Q 011198 80 KKLSSNEHVSIADGDIIELIPGHHFFKYV 108 (491)
Q Consensus 80 ~k~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (491)
+++.+.+.+.+.+||+|.+ |..-+.+.
T Consensus 83 ~~l~~~~~~~L~~gd~i~l--G~~~~~~~ 109 (118)
T 1uht_A 83 NALDPETSVNLGDGDVIKL--GEYTSILV 109 (118)
T ss_dssp SBCCTTCEEECCTTEEEEE--TTTEEEEE
T ss_pred EECCCCCeEEcCCCCEEEE--CCeEEEEE
Confidence 3577777888999999988 44433333
No 19
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=96.42 E-value=0.0064 Score=54.01 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=65.5
Q ss_pred CcccCC-CCCccccCC---Cccccccc----cccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccC
Q 011198 23 PKLPLS-QGPNVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADG 93 (491)
Q Consensus 23 ~~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~ 93 (491)
..++|. .+.-+|||+ +|.+.|.. +||.|..|....+|.+.|.=- .+|...|+. +++.....+.+.+|
T Consensus 20 ~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg----~~l~~~~~~~L~~G 95 (138)
T 2pie_A 20 GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNR----ARLEPLRVYSIHQG 95 (138)
T ss_dssp CBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETT----EECCTTCCEECCTT
T ss_pred CEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECC----EEcCCCCcEECCCC
Confidence 367887 456799995 68888988 999999999977888877665 699999964 56777778889999
Q ss_pred CcccccCC-----Cccceeeee
Q 011198 94 DIIELIPG-----HHFFKYVTL 110 (491)
Q Consensus 94 ~~~~~~~~-----~~~~~~~~~ 110 (491)
|+|.+=.. ..-|.|+..
T Consensus 96 D~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 96 DYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp CEEEESCCCTTCSSCSEEEEEE
T ss_pred CEEEECCCCCCCceEEEEEEec
Confidence 99999762 234555554
No 20
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=96.36 E-value=0.0034 Score=52.51 Aligned_cols=72 Identities=31% Similarity=0.425 Sum_probs=56.1
Q ss_pred CCCcccCCCCCccccC---CCccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccCCcc
Q 011198 21 SLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (491)
Q Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~ 96 (491)
+--.++|..|..+||| ++|.+.|..+||.|..|... +|...|.-- .+|.+.|+ +++ +. ++.+.+||.+
T Consensus 14 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~~--i~---~~~L~~gd~i 85 (100)
T 3po8_A 14 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD-GQVALLADLNSTNGTTVN--NAP--VQ---EWQLADGDVI 85 (100)
T ss_dssp SCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC-SSCEEEEECSCSSCCEET--TEE--CS---EEECCTTCEE
T ss_pred CCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe-CCEEEEEECCCCCCEEEC--CEE--Cc---eEECCCCCEE
Confidence 3557899999999999 57999999999999999976 555656554 48999886 332 32 4679999999
Q ss_pred cccC
Q 011198 97 ELIP 100 (491)
Q Consensus 97 ~~~~ 100 (491)
.+=.
T Consensus 86 ~iG~ 89 (100)
T 3po8_A 86 RLGH 89 (100)
T ss_dssp EETT
T ss_pred EECC
Confidence 8854
No 21
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=96.34 E-value=0.0062 Score=56.96 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=64.1
Q ss_pred CcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------ccEEEEEecCCceEeecCCcccccc
Q 011198 23 PKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVDGTNPVVVKSGDQRKKLS 83 (491)
Q Consensus 23 ~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~k~~ 83 (491)
..|+|..|. .+|||+ +|++.|..+||.|..|.... + |.+.|.=-.+|-..|+. +++.
T Consensus 42 ~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VNg----~ri~ 117 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNN----NRMI 117 (182)
T ss_dssp SCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEETT----EECC
T ss_pred eEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEECC----EEcC
Confidence 578888887 899997 69999999999999999754 1 44444433788888862 4677
Q ss_pred cccccccccCCcccc---cCCCccceeeee
Q 011198 84 SNEHVSIADGDIIEL---IPGHHFFKYVTL 110 (491)
Q Consensus 84 ~~~~~~i~~~~~~~~---~~~~~~~~~~~~ 110 (491)
.+..+.+.+||+|.| .+|...+.|...
T Consensus 118 ~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~ 147 (182)
T 1qu5_A 118 QGTKFLLQDGDEIKIIWDKNNKFVIGFKVE 147 (182)
T ss_dssp SSEEEECCTTBCCEEEEEGGGTEEEECCEE
T ss_pred CCcceEcCCCCEEEEEEcCCCCEEEEEEEE
Confidence 777788999999999 557666566544
No 22
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=96.32 E-value=0.0083 Score=53.75 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=64.1
Q ss_pred CcccCCCCC-ccccCC---Cccccccc----cccceeEEEecCCccEEEEE-ecCCceEeecCCcccccccccccccccC
Q 011198 23 PKLPLSQGP-NVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADG 93 (491)
Q Consensus 23 ~~~~~~~~~-~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~i~~~ 93 (491)
..+++..+. -+|||+ +|.+.|.. +||+|..|....+|...|.= ..+|...|+ .+++..++.+.+.+|
T Consensus 28 ~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vN----g~~i~~~~~~~L~~G 103 (145)
T 2csw_A 28 GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLN----RARLEPLRVYSIHQG 103 (145)
T ss_dssp CBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEES----SCBCCBTCCEECCSS
T ss_pred CeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEEC----CEECCCCccEECCCC
Confidence 367776665 489995 68888887 99999999997788776665 478999997 235777778889999
Q ss_pred CcccccCC----C-ccceeeee
Q 011198 94 DIIELIPG----H-HFFKYVTL 110 (491)
Q Consensus 94 ~~~~~~~~----~-~~~~~~~~ 110 (491)
|+|.+=.. . .-|.|+..
T Consensus 104 D~I~iG~~~~~g~~~~f~~~~~ 125 (145)
T 2csw_A 104 DYIQLGVPLENKENAEYEYEVT 125 (145)
T ss_dssp CCEEESCCCTTCSSCSCCCCEE
T ss_pred CEEEECCCCCCCceEEEEEEec
Confidence 99999763 2 33555544
No 23
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=96.31 E-value=0.0035 Score=56.45 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=59.7
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccCCccc
Q 011198 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (491)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~ 97 (491)
-..++|..+..+|||. +|.+.|..+||+|..|... +|.+.|.=- .+|.+.|+ ++ ++. .+.+.+||+|.
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~-~~~~~l~DlgS~NGT~VN--g~--~i~---~~~L~~GD~I~ 129 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN-EGEFEVVDVGSLNGTYVN--RE--PRN---AQVMQTGDEIQ 129 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE-TTEEEEEESCCSSCCEET--TE--ECS---EEECCTTEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE-CCEEEEEECCCcCCeEEC--CE--Ecc---eEECCCCCEEE
Confidence 3467888899999995 7999999999999999985 566666654 48999885 33 333 46799999998
Q ss_pred ccCCCccceeeee
Q 011198 98 LIPGHHFFKYVTL 110 (491)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (491)
+ |..-+.|...
T Consensus 130 i--G~~~l~f~~~ 140 (143)
T 2kb3_A 130 I--GKFRLVFLAG 140 (143)
T ss_dssp E--TTEEEEEEEC
T ss_pred E--CCEEEEEEeC
Confidence 8 5555555443
No 24
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=96.30 E-value=0.0035 Score=54.80 Aligned_cols=93 Identities=26% Similarity=0.376 Sum_probs=67.8
Q ss_pred eeeeeeCCCCccCCCCCCcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEEec-CCceEeecCCcccc
Q 011198 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSGDQRKK 81 (491)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k 81 (491)
.+.|+-+..+... -..++|..+..+|||+ +|.+.|..+||+|..|... +|.+.|.--| +|.+.|+ +++
T Consensus 12 ~~~L~v~~~~~~~---g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vN--g~~-- 83 (128)
T 1r21_A 12 TRRLVTIKRSGVD---GPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH-EQEAILHNFSSTNPTQVN--GSV-- 83 (128)
T ss_dssp CEEEEEEEETTEE---EEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC-SSCEEECCCCSSSCCEET--TEE--
T ss_pred ceEEEEEeCCCCC---ceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEE-CCEEEEEECCCCCCEEEC--CEE--
Confidence 5677766642211 2358888899999995 7999999999999999986 4666666554 8999885 333
Q ss_pred cccccccccccCCcccccCCCccceeeee
Q 011198 82 LSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (491)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (491)
+. ..+.+.+||+|.+ |..-|.|...
T Consensus 84 i~--~~~~L~~Gd~i~i--G~~~~~~~~~ 108 (128)
T 1r21_A 84 ID--EPVRLKHGDVITI--IDRSFRYENE 108 (128)
T ss_dssp CS--SCEECCTTEEEEC--SSCEEEEEEC
T ss_pred CC--CcEEcCCCCEEEE--CCEEEEEEeC
Confidence 33 3577999999998 5666666554
No 25
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=96.15 E-value=0.0068 Score=53.92 Aligned_cols=81 Identities=30% Similarity=0.417 Sum_probs=62.3
Q ss_pred cccCCCC-----CccccCC---CccccccccccceeEEEecCCc-cEEEEEec-CCceEeecCCcccccc--------cc
Q 011198 24 KLPLSQG-----PNVIGRT---NIPVSDKRLSRKHITLTASADG-SASLVVDG-TNPVVVKSGDQRKKLS--------SN 85 (491)
Q Consensus 24 ~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~k~~--------~~ 85 (491)
.++|..| ..+|||+ +|.+.|..+||+|.+|+...++ .+.|.=-| +|-..|+. +++. ++
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg----~~i~~~~~~~~~~~ 96 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNS----HSISHPDLGSRKWG 96 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETT----EESSCCCTTTCCCC
T ss_pred EEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECC----EECcCcccccccCC
Confidence 5677776 5699994 7999999999999999999875 67676664 89998863 2333 35
Q ss_pred cccccccCCcccccCCCccceeeee
Q 011198 86 EHVSIADGDIIELIPGHHFFKYVTL 110 (491)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (491)
+.+.+.+||+|.+ |..-+.|...
T Consensus 97 ~~~~L~~GD~I~i--G~~~~~~~~~ 119 (139)
T 1mzk_A 97 NPVELASDDIITL--GTTTKVYVRI 119 (139)
T ss_dssp CCEECCTTEEEEC--SSSCEEEEEE
T ss_pred ceEECCCCCEEEE--CCEEEEEEEc
Confidence 6788999999988 6666666555
No 26
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=96.12 E-value=0.0055 Score=51.84 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=59.8
Q ss_pred CCcccCCCCCc-cccCC----CccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccCCc
Q 011198 22 LPKLPLSQGPN-VIGRT----NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (491)
Q Consensus 22 ~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~~~ 95 (491)
--.++|..|.. +|||+ +|++.|..+||+|.+|....+|...|.=- .+|.+.|+. + ++.. .+.+.+||+
T Consensus 16 g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng--~--~i~~--~~~L~~Gd~ 89 (106)
T 3gqs_A 16 GAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEG--R--KIEH--QSTLSANQV 89 (106)
T ss_dssp TCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETT--E--ECSS--EEECCTTCC
T ss_pred cEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECC--E--ECCC--CeECCCCCE
Confidence 34688888876 79996 58999999999999999988887766655 689988852 2 2332 356899999
Q ss_pred ccccCCCccceeee
Q 011198 96 IELIPGHHFFKYVT 109 (491)
Q Consensus 96 ~~~~~~~~~~~~~~ 109 (491)
|.+ |..-+++..
T Consensus 90 i~~--G~~~~~~~~ 101 (106)
T 3gqs_A 90 VAL--GTTLFLLVD 101 (106)
T ss_dssp EEE--TTEEEEEEE
T ss_pred EEE--CCEEEEEEc
Confidence 987 555555543
No 27
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=96.07 E-value=0.0051 Score=56.41 Aligned_cols=72 Identities=31% Similarity=0.435 Sum_probs=54.9
Q ss_pred CCCCcccCCCCCccccC---CCccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccCCc
Q 011198 20 NSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (491)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~~~ 95 (491)
++--.++|..+..+||| ++|++.|..+||+|.+|.... +.+.|.=- .+|.+.|+ ++ ++. ++.+.+||+
T Consensus 75 g~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~-~~~~l~DlgStNGT~VN--G~--~i~---~~~L~~GD~ 146 (157)
T 3oun_A 75 GSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG-QVALLADLNSTNGTTVN--NA--PVQ---EWQLADGDV 146 (157)
T ss_dssp TTCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS-SCEEEEECSCSSCCEET--TE--ECS---EEECCTTCE
T ss_pred CCCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC-CEEEEEECCCCCCeEEC--CE--ECc---eEECCCCCE
Confidence 34567899999999999 479999999999999999864 44545444 58999885 32 232 467899999
Q ss_pred cccc
Q 011198 96 IELI 99 (491)
Q Consensus 96 ~~~~ 99 (491)
|.|=
T Consensus 147 I~lG 150 (157)
T 3oun_A 147 IRLG 150 (157)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8873
No 28
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=96.01 E-value=0.004 Score=57.08 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=69.7
Q ss_pred eeeeeeCCCCccCCCCCCcccCCCC-----------CccccCC---Ccccccc-ccccceeEEEecCCccEEEEEecCCc
Q 011198 6 IGYLVPLDNNLREDNSLPKLPLSQG-----------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDGTNP 70 (491)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (491)
++.|+.+..... -..++|..+ ..+|||+ +|++.|. ++||+|..|....+|.+.|.--.+|.
T Consensus 33 ~~~L~v~~G~~~----g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g~~~l~DlS~NG 108 (164)
T 1g3g_A 33 VCRVICTTGQIP----IRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNG 108 (164)
T ss_dssp CEEEECSSSSSC----CEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTTCEEEEECCSSC
T ss_pred cEEEEEecCCCC----CeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCCCEEEEECCCCC
Confidence 566666653321 224555544 7899994 6888886 79999999999778887777669999
Q ss_pred eEeecCCcccccccccccccccCCcccccCCC--ccceeeee
Q 011198 71 VVVKSGDQRKKLSSNEHVSIADGDIIELIPGH--HFFKYVTL 110 (491)
Q Consensus 71 ~~~~~~~~~~k~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~ 110 (491)
..|+. +++..+..+.+.+||+|.+=... .-++|+..
T Consensus 109 T~vNg----~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~ 146 (164)
T 1g3g_A 109 TWLNG----QKVEKNSNQLLSQGDEITVGVGVESDILSLVIF 146 (164)
T ss_dssp EEETT----EEECTTEEEECCTTCEEEESCSSTTSCEEEEEE
T ss_pred eEECC----EEcCCCCceEcCCCCEEEECCCCCCCcEEEEEE
Confidence 99973 56777777889999999996652 23344444
No 29
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=95.97 E-value=0.0068 Score=55.76 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=58.3
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEEe-cCCceEeecCCcccccccccccccccCCcccc
Q 011198 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (491)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~ 98 (491)
..++|..+..+|||+ +|++.|..+||+|..|... +|.+.|.=- .+|...|+ ++| +. .+.+.+||+|.|
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~-~~~~~l~DlgS~NGT~VN--g~~--i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE-NNEFNVVDVGSLNGTYVN--REP--VD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE-TTEEEEECCCCSSCEEET--TBC--CS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE-CCEEEEEECCCCCCeEEC--CEE--cc---eEECCCCCEEEE
Confidence 467788889999996 7999999999999999986 556656554 48999886 332 33 467999999988
Q ss_pred cCCCccceeee
Q 011198 99 IPGHHFFKYVT 109 (491)
Q Consensus 99 ~~~~~~~~~~~ 109 (491)
|..-+.|..
T Consensus 140 --G~~~l~f~~ 148 (162)
T 2kfu_A 140 --GKFRLVFLT 148 (162)
T ss_dssp --TTEEEEEEC
T ss_pred --CCEEEEEEe
Confidence 555555543
No 30
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=95.64 E-value=0.017 Score=52.47 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=68.8
Q ss_pred eeeeeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCCc----cEEEEEecCCceEeec
Q 011198 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASADG----SASLVVDGTNPVVVKS 75 (491)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (491)
.-|||-|+++....+ +=-..|.+|..+|||. +|++.|..+||+|-.++...++ .+-+....+|.+.|+-
T Consensus 38 ~PhLvnLn~Dp~ls~-~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG 116 (154)
T 4ejq_A 38 TPHLVNLNEDPLMSE-CLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNG 116 (154)
T ss_dssp SCEEEECCCCTTCSS-EEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETT
T ss_pred CceEEEecCCcccCc-eEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECC
Confidence 457888887754322 2235788999999994 6999999999999999987765 3445556789988863
Q ss_pred CCcccccccccccccccCCcccccCCCccceeee
Q 011198 76 GDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (491)
Q Consensus 76 ~~~~~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (491)
+ ++ .+.+.+.+||.|.+= .+++|.|..
T Consensus 117 --~--~i--~~~~~L~~GD~I~~G-~~~~Frf~~ 143 (154)
T 4ejq_A 117 --K--KV--TEPSILRSGNRIIMG-KSHVFRFNH 143 (154)
T ss_dssp --E--EC--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred --E--Ec--CCceECCCCCEEEEC-CcEEEEEcC
Confidence 2 23 235678999999873 245677764
No 31
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.35 E-value=0.013 Score=60.10 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=60.3
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEE-ecCCceEeecCCcccccccccccccccCCcccc
Q 011198 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (491)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~ 98 (491)
..++|..+.++|||+ +|++.|..+||+|..|... +|.+.|.= ..+|.+.|+ |+ ++. ..+.+.+||+|.+
T Consensus 299 ~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~--~i~--~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 299 RGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT-GTNYVINDLRSSNGVHVQ--HE--RIR--SAVTLNDGDHIRI 371 (388)
T ss_dssp CEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC-SSCEEEEECSCSSCCEET--TE--ECS--SEEEECTTCEEEE
T ss_pred cEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE-CCEEEEEECCCCCCeEEC--CE--ECC--CceECCCCCEEEE
Confidence 468899999999995 7999999999999999986 45555554 359999996 33 332 4677999999988
Q ss_pred cCCCccceeeee
Q 011198 99 IPGHHFFKYVTL 110 (491)
Q Consensus 99 ~~~~~~~~~~~~ 110 (491)
|..-++|...
T Consensus 372 --G~~~~~~~~~ 381 (388)
T 2ff4_A 372 --CDHEFTFQIS 381 (388)
T ss_dssp --TTEEEEEECS
T ss_pred --CCEEEEEEeC
Confidence 5555555544
No 32
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=95.28 E-value=0.019 Score=50.68 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=56.8
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecC--Ccc--EEEEEe------cCCceEeecCCcccccccccccc
Q 011198 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASA--DGS--ASLVVD------GTNPVVVKSGDQRKKLSSNEHVS 89 (491)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~------~~~~~~~~~~~~~~k~~~~~~~~ 89 (491)
-.++|..+..+|||. +|++.|..+||+|.+|.... ||. ..|.=- .+|.+.|+ |+| +.. +.
T Consensus 23 ~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vN--g~~--i~~---~~ 95 (131)
T 3hx1_A 23 REVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMIN--GKK--VQE---HI 95 (131)
T ss_dssp EEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEET--TEE--ESE---EE
T ss_pred EEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEEC--CEE--eEe---EE
Confidence 468888899999994 89999999999999998763 453 544442 68999884 332 332 77
Q ss_pred cccCCcccccCCCccceeeeeccccccccc
Q 011198 90 IADGDIIELIPGHHFFKYVTLSRSQKRVSN 119 (491)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (491)
+.+||+|.+=.- .+..|....+..+|--.
T Consensus 96 L~~GD~I~iG~~-~~~~~~~~~~d~~~~~~ 124 (131)
T 3hx1_A 96 IQTGDEIVMGPQ-VSVRYEYRRRDQFGTML 124 (131)
T ss_dssp CCTTCEEECSTT-CEEEEEEECC-------
T ss_pred CCCCCEEEECCE-EEEEEEEecCCCCcccc
Confidence 999999998443 33344444444444333
No 33
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=94.82 E-value=0.041 Score=48.54 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=56.6
Q ss_pred CCcccCCCCC-ccccC---CCccccccccccceeEEEec----------CCccEEEE-EecCCceEeecCCccccccccc
Q 011198 22 LPKLPLSQGP-NVIGR---TNIPVSDKRLSRKHITLTAS----------ADGSASLV-VDGTNPVVVKSGDQRKKLSSNE 86 (491)
Q Consensus 22 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~ 86 (491)
+..++|.+.+ =+||| ++|++.|..+||+|-.|.-. .++...|. ..-+|-..|+. +++.++.
T Consensus 32 ~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg----~ri~~~~ 107 (130)
T 4h87_A 32 LGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNK----TRIPPRT 107 (130)
T ss_dssp EEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETT----EECCTTC
T ss_pred eeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECC----EECCCCc
Confidence 3467776655 47999 57999999999999999521 22223222 12477777742 4677777
Q ss_pred ccccccCCcccccCCCccceeeee
Q 011198 87 HVSIADGDIIELIPGHHFFKYVTL 110 (491)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~ 110 (491)
.+.+.+||+|.+ |..-..|+..
T Consensus 108 ~~~L~~GD~I~~--G~str~yvl~ 129 (130)
T 4h87_A 108 YCRVHVGHVVRF--GGSTRLFILQ 129 (130)
T ss_dssp CEECCTTCEEEE--TTCSEEEEEE
T ss_pred eeECCCCCEEEE--CCceEEEEEc
Confidence 788999999988 6655566654
No 34
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.03 Score=51.12 Aligned_cols=90 Identities=16% Similarity=0.296 Sum_probs=63.6
Q ss_pred eeeCCCCccCCCCCCcccCCCCCc-cccCC------------------CccccccccccceeEEEecCCc-c--EEEE-E
Q 011198 9 LVPLDNNLREDNSLPKLPLSQGPN-VIGRT------------------NIPVSDKRLSRKHITLTASADG-S--ASLV-V 65 (491)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~ 65 (491)
|+.++.+.+.+..+..+.|..+.- +|||+ +|++.|..+||.|..|....++ . ..|. .
T Consensus 34 l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl 113 (158)
T 3els_A 34 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 113 (158)
T ss_dssp EEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeC
Confidence 555555544444677888988764 78995 6777889999999999987665 1 2222 2
Q ss_pred ecCCceEeecCCcccccccccccccccCCcccccCCC
Q 011198 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (491)
Q Consensus 66 ~~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~~~~~ 102 (491)
..||...|+. +++..+..+.+.+||+|.+=...
T Consensus 114 ~StNGT~VNg----~ri~~~~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 114 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEFE 146 (158)
T ss_dssp SCSSCCEETT----EECCTTCCEECCTTEEEESSSCG
T ss_pred CCCCccEECC----EEcCCCceEEcCCCCEEEECCCC
Confidence 3688888853 46666667789999999885443
No 35
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=93.94 E-value=0.046 Score=55.97 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=58.1
Q ss_pred ceeeeeeCCCCccCCCCCCcccCCCCCccccC---CCcccccc---------ccccceeEEEecC--Cc--cEEEEEecC
Q 011198 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDK---------RLSRKHITLTASA--DG--SASLVVDGT 68 (491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~--~~--~~~~~~~~~ 68 (491)
..|.|+++..+.. .|+|.++.++||| .++++.|. ++||+|..|.... ++ .+.|.--.+
T Consensus 9 ~~g~l~~~~~~~~------~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~ 82 (419)
T 3i6u_A 9 PWARLWALQDGFA------NLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 82 (419)
T ss_dssp CSEEEEECSSSSC------CEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCS
T ss_pred CceEeeecCCCCC------ceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCc
Confidence 5799999987653 7899999999999 67888885 4599999996542 22 244555567
Q ss_pred CceEeecCCcccccccccccccccCCccccc
Q 011198 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELI 99 (491)
Q Consensus 69 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~~ 99 (491)
|...|+. .++....+..+.++|.+.+-
T Consensus 83 nGt~vn~----~~~~~~~~~~l~~~d~i~~~ 109 (419)
T 3i6u_A 83 NGTFVNT----ELVGKGKRRPLNNNSEIALS 109 (419)
T ss_dssp SCEEETT----EECCTTCEEECCTTEEEEES
T ss_pred CCceECc----ccccCCCcccCCCCCEeeee
Confidence 8877743 22333334445566655553
No 36
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=93.16 E-value=0.11 Score=49.60 Aligned_cols=91 Identities=15% Similarity=0.283 Sum_probs=62.9
Q ss_pred eeeCCCCccCCCCCCcccCCCC-CccccCC------------------CccccccccccceeEEEecCCc-c--EEEE-E
Q 011198 9 LVPLDNNLREDNSLPKLPLSQG-PNVIGRT------------------NIPVSDKRLSRKHITLTASADG-S--ASLV-V 65 (491)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~ 65 (491)
|.-++.+.+.+..+..++|.++ .=+|||+ +|++.|..+||.|..|....++ . ..|. .
T Consensus 81 L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DL 160 (205)
T 3elv_A 81 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 160 (205)
T ss_dssp EEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeC
Confidence 3334333333345678999764 4699995 8899999999999999876544 2 2222 1
Q ss_pred ecCCceEeecCCcccccccccccccccCCcccccCCCc
Q 011198 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHH 103 (491)
Q Consensus 66 ~~~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~~~~~~ 103 (491)
..||-..|+. +++.+...+.+.+||+|.+=....
T Consensus 161 gStNGTfVNG----~rI~~~~~~~L~~GD~I~fG~s~r 194 (205)
T 3elv_A 161 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEFEE 194 (205)
T ss_dssp SCSSCCEETT----EECCBTSCEECCTTCEEESSSSGG
T ss_pred CCCCCCeECC----EECCCCceeECCCCCEEEECCCCC
Confidence 3678888863 467777777899999999876553
No 37
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=90.99 E-value=0.45 Score=44.36 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=70.0
Q ss_pred ceeeeeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCC----ccEEEEEecCCceEee
Q 011198 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASAD----GSASLVVDGTNPVVVK 74 (491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (491)
..-|||-||++...++. =-..|.+|...|||. +|+...-.+++.|-.++...+ |.+.|.....+.+.|+
T Consensus 67 ~~PhLvnLn~Dp~ls~~-l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VN 145 (184)
T 4egx_A 67 KTPHLVNLNEDPLMSEC-LLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVN 145 (184)
T ss_dssp SSCEEEECCCCTTCSSC-SEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEET
T ss_pred CCceEEeccCCcccCce-EEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEc
Confidence 45689999888654433 356788999999995 589999999999999988654 5566666666677775
Q ss_pred cCCcccccccccccccccCCcccccCCCccceeee
Q 011198 75 SGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (491)
Q Consensus 75 ~~~~~~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (491)
- . .+ .+.+...+||.|-|= .+++|.|..
T Consensus 146 G--~--~I--~~~~~L~~GDrI~lG-~~h~Frfn~ 173 (184)
T 4egx_A 146 G--K--KV--TEPSILRSGNRIIMG-KSHVFRFNH 173 (184)
T ss_dssp T--E--EC--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred C--E--Ec--cccEEcCCCCEEEEC-CCCEEEECC
Confidence 3 2 23 245668889988554 456777764
No 38
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=84.07 E-value=0.74 Score=40.50 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=41.2
Q ss_pred cccCCCCCccccCC----CccccccccccceeEEEecCCccEEEEEecCCceEeec
Q 011198 24 KLPLSQGPNVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKS 75 (491)
Q Consensus 24 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (491)
.++|.+|.=+||.+ +|+..|..+||.|..|....+|.. |. ..+|+..++.
T Consensus 18 ~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g~~-L~-~s~ngt~vdG 71 (123)
T 4a0e_A 18 EVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIR-LT-DSAEPLLQEG 71 (123)
T ss_dssp EEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTEEE-EE-EESSCCEETT
T ss_pred EEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCeEE-EE-eccCCEEECC
Confidence 46777888889985 699999999999999999877755 54 7889987763
No 39
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=79.08 E-value=1.8 Score=37.43 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCChhccc-ccCCeEEeec
Q 011198 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 293 (491)
Q Consensus 251 ~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~-~~tQ~vWiqD 293 (491)
+.+.+|+|++|. |+-.++|.|+|+...... +.+.++.+.+
T Consensus 89 ~~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 89 NFPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred CcccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 467899999998 788899999999876432 3455665554
No 40
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=61.30 E-value=8.2 Score=32.83 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=46.8
Q ss_pred CcccCCCCCc-cccCC---CccccccccccceeEEEecCCccEEEEEecCCc-eEeecCCcccccccccccccccCCcc
Q 011198 23 PKLPLSQGPN-VIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDGTNP-VVVKSGDQRKKLSSNEHVSIADGDII 96 (491)
Q Consensus 23 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~~~~~~i~~~~~~ 96 (491)
|-+-|-.+.+ -|||+ ++.+.|+-+||.|-++.-..+|..-+. -+|- |-|+ |+|- ..+.|..||.|
T Consensus 13 p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G~~~l~--S~nGtVFVN--Gqrv-----~~~~I~~gDtI 82 (102)
T 3uv0_A 13 PAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRGVVRLA--ALVGKIFVN--DQEE-----TVVDIGMENAV 82 (102)
T ss_dssp CCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETTEEEEE--ESSSCEEET--TEEE-----SEEEECGGGCB
T ss_pred ccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCceEEEE--eccCcEEEC--CEEe-----eeEEccCCccc
Confidence 4444444544 37886 688999999999999999999988665 6777 7774 3332 34567777764
No 41
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=57.53 E-value=7.7 Score=35.71 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCCCCccceeEEEEeCCccEEEEeCCCCChhccc-ccCCeEEee
Q 011198 250 ISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQ 292 (491)
Q Consensus 250 ~~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~-~~tQ~vWiq 292 (491)
.+.|.+|.|+||. ||-.+++.|+|++..-+. +.+.++.+.
T Consensus 118 ~~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~ 158 (196)
T 4ggj_A 118 QDLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIME 158 (196)
T ss_dssp CSSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEEC
T ss_pred cccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEE
Confidence 3568899999999 888899999999876543 345566554
No 42
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=53.30 E-value=13 Score=37.65 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=28.4
Q ss_pred cccCCCCCccccCCC------ccccccccccceeEEEec
Q 011198 24 KLPLSQGPNVIGRTN------IPVSDKRLSRKHITLTAS 56 (491)
Q Consensus 24 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 56 (491)
++.|..|.-+|||.+ |++.|+-+||+|.+|+..
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~ 53 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTIL 53 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEEC
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEe
Confidence 577778889999984 478999999999999876
No 43
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=45.32 E-value=17 Score=38.20 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCCccceeEEEEeCCccEEEEeCCCCChhcccccCCeEEeec
Q 011198 252 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 293 (491)
Q Consensus 252 fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~~tQ~vWiqD 293 (491)
-+..|+|+||. |+-.++|.|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 46899999998 788899999999877774 55777764
No 44
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=30.43 E-value=29 Score=36.41 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCChhcccc-cCCeEEeec
Q 011198 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN-KSQGLWMQD 293 (491)
Q Consensus 251 ~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~-~tQ~vWiqD 293 (491)
..|.+|+|+|++ |+-.++|.|+||.+.-+.. .+.++.+.|
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~ 399 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYD 399 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEEC
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeC
Confidence 568999999999 7778999999999876643 567777764
No 45
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=30.36 E-value=27 Score=32.21 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=38.2
Q ss_pred ccEEEEEecCCc----eEeecCCcccccccccccccccCCcccccCCCc
Q 011198 59 GSASLVVDGTNP----VVVKSGDQRKKLSSNEHVSIADGDIIELIPGHH 103 (491)
Q Consensus 59 ~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~i~~~~~~~~~~~~~ 103 (491)
|.++|.++|... |.|. +|.++.+.+.+...+..||.+-|+||.+
T Consensus 89 G~v~l~~~g~~~~~~~v~v~-dg~~~~~~a~~~i~L~pGesvtIppg~~ 136 (175)
T 2y0o_A 89 GKVYLYVEGEKTPLPKVLPP-QEDREHYTVWHEIELEPGGQYTIPPNTK 136 (175)
T ss_dssp EEEEEEESSSCCSSCSCCCC-GGGGGGCCCCEEEEECTTCEEEECTTCC
T ss_pred CEEEEEECCccccCcceecc-CCceeeecCCcEEEECCCCEEEECCCCc
Confidence 778899988653 6666 9999999999999999999999999954
No 46
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=24.34 E-value=45 Score=34.92 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=26.7
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCChhccccc
Q 011198 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNK 285 (491)
Q Consensus 251 ~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~~ 285 (491)
.++.||.|+++. ||-.++|.++|++..+|-..
T Consensus 162 ~~~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~~~ 193 (506)
T 1v0w_A 162 AFSWNHSKILVV---DGQSALTGGINSWKDDYLDT 193 (506)
T ss_dssp TTBCBCCCEEEE---TTTEEEEESCCCCHHHHTSS
T ss_pred ccccceeeEEEE---CCcEEEeeccccCccccccC
Confidence 578999999999 89889999999986666443
No 47
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=23.06 E-value=55 Score=32.41 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=31.7
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCChhcccccCCeEEee
Q 011198 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ 292 (491)
Q Consensus 251 ~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~~tQ~vWiq 292 (491)
.--.+|+|..+.+-.+|.-+||.|+||+..- +.|-|=++
T Consensus 100 rkRi~HaK~Yg~~~n~g~~LIV~SgNfT~pG---msQNvE~s 138 (358)
T 2c1l_A 100 RKRILHAKLYGTSNNLGESLVVSSGNFTGPG---MSQNIEAS 138 (358)
T ss_dssp CSSCBCCEEEEEEETTEEEEEEESCCBSTTT---TTTSBEEE
T ss_pred eeeecchhhhcccCCCceEEEEecCCccccc---cccceeEE
Confidence 5667899999999999999999999998764 45544444
Done!