Query 011201
Match_columns 491
No_of_seqs 681 out of 3058
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 22:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.9E-61 6.3E-66 495.0 52.7 387 89-490 386-774 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-60 6.9E-65 487.4 51.3 377 89-481 422-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-59 3.2E-64 479.7 43.7 376 89-490 103-514 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8.5E-55 1.8E-59 444.7 45.0 374 90-491 140-549 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-54 3.1E-59 453.3 44.5 386 90-490 138-645 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.4E-53 2.9E-58 446.0 41.0 372 91-490 104-475 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-23 5E-28 222.5 48.4 359 109-490 533-891 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-22 2.4E-27 217.2 48.9 357 107-485 463-819 (899)
9 PRK11788 tetratricopeptide rep 99.9 4.1E-23 8.9E-28 198.4 34.4 303 161-471 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.8E-21 6E-26 185.7 35.4 304 116-436 42-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1E-18 2.2E-23 176.3 44.5 332 112-464 45-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-17 3.9E-22 167.8 45.9 360 111-490 129-562 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 5.2E-19 1.1E-23 163.4 30.5 357 108-490 115-476 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 3.9E-17 8.3E-22 165.4 46.2 357 89-464 143-571 (615)
15 PRK15174 Vi polysaccharide exp 99.9 1.1E-17 2.5E-22 168.7 39.9 322 157-490 45-372 (656)
16 PRK11447 cellulose synthase su 99.8 6.4E-17 1.4E-21 174.4 44.9 358 116-490 276-731 (1157)
17 KOG4626 O-linked N-acetylgluco 99.8 2.9E-17 6.3E-22 152.0 31.1 362 90-480 133-500 (966)
18 PRK10049 pgaA outer membrane p 99.8 1.1E-15 2.3E-20 157.8 46.1 399 66-490 10-447 (765)
19 PRK11447 cellulose synthase su 99.8 1E-15 2.3E-20 165.1 45.8 364 90-463 286-739 (1157)
20 PRK10049 pgaA outer membrane p 99.8 1.5E-14 3.4E-19 149.3 48.6 367 90-480 66-470 (765)
21 PRK14574 hmsH outer membrane p 99.8 8.3E-14 1.8E-18 141.4 45.2 378 90-490 51-504 (822)
22 KOG4422 Uncharacterized conser 99.7 2.9E-13 6.3E-18 120.6 38.1 309 150-465 203-552 (625)
23 PRK14574 hmsH outer membrane p 99.7 1.5E-12 3.2E-17 132.5 46.1 359 114-490 39-470 (822)
24 KOG4422 Uncharacterized conser 99.7 5.5E-14 1.2E-18 125.1 30.5 345 110-484 117-482 (625)
25 PRK09782 bacteriophage N4 rece 99.7 2.1E-12 4.7E-17 134.0 40.6 324 123-470 356-710 (987)
26 KOG2076 RNA polymerase III tra 99.7 2.8E-12 6.1E-17 124.6 38.4 362 111-488 141-544 (895)
27 PRK09782 bacteriophage N4 rece 99.7 6.9E-12 1.5E-16 130.3 42.3 357 108-486 375-760 (987)
28 PRK10747 putative protoheme IX 99.7 1.3E-12 2.9E-17 124.5 34.5 283 167-463 97-389 (398)
29 TIGR00540 hemY_coli hemY prote 99.7 2.5E-12 5.4E-17 123.4 36.4 299 157-462 85-397 (409)
30 PRK10747 putative protoheme IX 99.6 2.2E-12 4.8E-17 123.1 34.1 283 122-428 97-389 (398)
31 TIGR00540 hemY_coli hemY prote 99.6 4.9E-12 1.1E-16 121.4 36.3 301 111-428 84-398 (409)
32 KOG2002 TPR-containing nuclear 99.6 3.8E-12 8.2E-17 124.6 35.1 388 86-490 249-736 (1018)
33 COG2956 Predicted N-acetylgluc 99.6 4.1E-12 8.9E-17 109.4 30.2 288 166-464 47-347 (389)
34 PF13429 TPR_15: Tetratricopep 99.6 3.6E-15 7.8E-20 135.9 12.1 255 161-422 15-270 (280)
35 KOG2003 TPR repeat-containing 99.6 3.6E-13 7.8E-18 120.8 23.9 100 117-225 245-344 (840)
36 PF13429 TPR_15: Tetratricopep 99.6 4.7E-15 1E-19 135.1 12.4 262 195-463 13-276 (280)
37 KOG1155 Anaphase-promoting com 99.6 3.4E-11 7.3E-16 108.7 33.2 285 197-490 234-527 (559)
38 COG2956 Predicted N-acetylgluc 99.6 1.5E-11 3.3E-16 106.0 28.9 273 203-482 48-327 (389)
39 COG3071 HemY Uncharacterized e 99.6 5E-10 1.1E-14 99.7 38.6 290 167-468 97-394 (400)
40 KOG1126 DNA-binding cell divis 99.6 4E-12 8.6E-17 119.9 25.5 285 168-464 333-620 (638)
41 KOG2076 RNA polymerase III tra 99.5 8.8E-11 1.9E-15 114.4 34.9 330 154-490 140-503 (895)
42 COG3071 HemY Uncharacterized e 99.5 4E-10 8.7E-15 100.3 35.5 296 113-429 86-390 (400)
43 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.5E-16 116.8 26.2 282 124-430 334-621 (638)
44 KOG2003 TPR repeat-containing 99.5 1.6E-10 3.5E-15 104.0 29.9 378 91-487 255-711 (840)
45 KOG1155 Anaphase-promoting com 99.5 2.9E-10 6.4E-15 102.8 30.4 312 161-484 234-554 (559)
46 KOG2002 TPR-containing nuclear 99.5 2E-09 4.4E-14 105.9 37.7 361 90-471 147-530 (1018)
47 KOG0547 Translocase of outer m 99.4 1E-09 2.2E-14 100.0 30.9 329 112-462 118-564 (606)
48 KOG4318 Bicoid mRNA stability 99.4 1.4E-11 3E-16 119.4 19.9 264 185-485 20-286 (1088)
49 PRK12370 invasion protein regu 99.4 4E-10 8.7E-15 112.4 31.3 233 108-358 255-501 (553)
50 KOG0495 HAT repeat protein [RN 99.4 6.1E-09 1.3E-13 98.3 36.6 367 103-487 473-868 (913)
51 KOG1915 Cell cycle control pro 99.4 2.7E-08 5.9E-13 90.6 38.9 365 90-478 90-548 (677)
52 KOG0495 HAT repeat protein [RN 99.4 7.2E-09 1.6E-13 97.8 36.3 330 109-464 550-880 (913)
53 PRK12370 invasion protein regu 99.4 2.1E-10 4.6E-15 114.4 28.3 216 170-393 277-501 (553)
54 PF13041 PPR_2: PPR repeat fam 99.4 8.4E-13 1.8E-17 84.8 6.8 50 433-482 1-50 (50)
55 PF13041 PPR_2: PPR repeat fam 99.4 9.5E-13 2.1E-17 84.5 6.5 49 223-271 1-49 (50)
56 TIGR02521 type_IV_pilW type IV 99.4 4.9E-10 1.1E-14 99.3 26.5 198 154-356 31-229 (234)
57 TIGR02521 type_IV_pilW type IV 99.4 4.9E-10 1.1E-14 99.2 26.5 199 189-391 30-229 (234)
58 PF12569 NARP1: NMDA receptor- 99.4 3.8E-09 8.1E-14 102.1 33.4 295 158-463 8-333 (517)
59 KOG0547 Translocase of outer m 99.3 6E-09 1.3E-13 95.1 29.2 323 156-490 117-557 (606)
60 KOG1129 TPR repeat-containing 99.3 6.9E-10 1.5E-14 96.0 21.0 228 158-393 227-457 (478)
61 KOG1129 TPR repeat-containing 99.3 6.7E-10 1.5E-14 96.1 20.5 233 229-470 227-462 (478)
62 PF12569 NARP1: NMDA receptor- 99.3 4.7E-08 1E-12 94.6 33.5 298 111-428 6-333 (517)
63 KOG1173 Anaphase-promoting com 99.3 3.2E-08 7E-13 92.1 29.6 284 189-483 243-535 (611)
64 KOG1915 Cell cycle control pro 99.3 6.1E-07 1.3E-11 82.0 37.0 360 108-489 72-490 (677)
65 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.9E-12 88.8 35.3 309 151-464 3-336 (355)
66 KOG1840 Kinesin light chain [C 99.2 9E-09 1.9E-13 98.3 25.5 172 151-322 196-394 (508)
67 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.8E-13 97.2 24.7 244 109-355 199-475 (508)
68 KOG1173 Anaphase-promoting com 99.2 1E-07 2.2E-12 88.9 28.9 286 152-446 242-533 (611)
69 KOG4318 Bicoid mRNA stability 99.2 6.3E-09 1.4E-13 101.5 21.5 246 103-380 19-286 (1088)
70 KOG1174 Anaphase-promoting com 99.2 4.3E-07 9.2E-12 81.6 31.2 294 166-471 208-505 (564)
71 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-07 3.2E-12 86.1 29.4 218 168-394 40-265 (296)
72 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.7E-12 86.7 27.7 223 123-362 40-268 (296)
73 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.3E-11 83.5 34.9 305 111-429 8-336 (355)
74 KOG2376 Signal recognition par 99.1 2.5E-06 5.4E-11 80.3 34.8 349 114-484 17-506 (652)
75 KOG1174 Anaphase-promoting com 99.1 7.8E-06 1.7E-10 73.7 35.1 288 193-489 197-490 (564)
76 COG3063 PilF Tfp pilus assembl 99.1 3.3E-07 7.1E-12 76.1 23.7 200 155-359 36-236 (250)
77 KOG2047 mRNA splicing factor [ 99.0 1.1E-05 2.4E-10 76.8 36.5 363 91-469 156-583 (835)
78 COG3063 PilF Tfp pilus assembl 99.0 4.3E-07 9.2E-12 75.5 24.1 184 234-421 44-228 (250)
79 KOG1156 N-terminal acetyltrans 99.0 6.5E-06 1.4E-10 78.4 33.8 175 108-299 74-256 (700)
80 KOG4162 Predicted calmodulin-b 99.0 7.9E-06 1.7E-10 79.4 34.2 371 105-490 319-774 (799)
81 KOG3785 Uncharacterized conser 98.9 5.4E-06 1.2E-10 73.2 28.1 160 116-289 29-214 (557)
82 KOG4340 Uncharacterized conser 98.9 8.6E-07 1.9E-11 76.3 21.8 193 157-360 13-208 (459)
83 PRK04841 transcriptional regul 98.9 1.2E-05 2.5E-10 86.5 36.1 329 161-490 381-751 (903)
84 KOG1156 N-terminal acetyltrans 98.9 1.8E-05 4E-10 75.5 32.4 200 109-324 41-248 (700)
85 PRK04841 transcriptional regul 98.9 1.9E-05 4.2E-10 84.8 37.6 307 159-465 414-761 (903)
86 PLN02789 farnesyltranstransfer 98.9 4E-06 8.7E-11 76.7 27.0 216 154-376 37-266 (320)
87 PF04733 Coatomer_E: Coatomer 98.9 2.4E-07 5.2E-12 83.6 18.0 251 162-429 9-265 (290)
88 KOG0548 Molecular co-chaperone 98.9 2.9E-05 6.2E-10 72.7 31.5 362 89-482 18-471 (539)
89 KOG4340 Uncharacterized conser 98.9 5.2E-06 1.1E-10 71.6 24.6 291 112-425 13-335 (459)
90 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 85.1 16.2 252 200-469 11-268 (290)
91 PLN02789 farnesyltranstransfer 98.9 6E-06 1.3E-10 75.6 27.0 215 111-342 39-267 (320)
92 PF12854 PPR_1: PPR repeat 98.8 3.9E-09 8.5E-14 60.7 3.8 32 220-251 2-33 (34)
93 PF12854 PPR_1: PPR repeat 98.8 4.5E-09 9.8E-14 60.4 3.9 33 429-461 1-33 (34)
94 KOG0985 Vesicle coat protein c 98.8 7E-05 1.5E-09 75.1 34.8 203 225-462 1104-1306(1666)
95 KOG1914 mRNA cleavage and poly 98.8 0.00011 2.3E-09 68.9 34.7 367 106-489 17-491 (656)
96 KOG1125 TPR repeat-containing 98.8 1.1E-06 2.3E-11 82.6 21.3 243 234-487 294-559 (579)
97 KOG3785 Uncharacterized conser 98.8 6E-06 1.3E-10 72.9 23.6 202 263-473 288-497 (557)
98 KOG0624 dsRNA-activated protei 98.8 0.0001 2.2E-09 65.1 33.3 302 111-430 40-371 (504)
99 KOG3616 Selective LIM binding 98.8 3.7E-06 7.9E-11 81.1 23.2 135 267-423 739-873 (1636)
100 KOG2047 mRNA splicing factor [ 98.8 6.9E-05 1.5E-09 71.6 30.7 298 155-463 103-453 (835)
101 KOG1125 TPR repeat-containing 98.7 4E-06 8.6E-11 78.9 22.1 255 161-422 292-564 (579)
102 KOG1128 Uncharacterized conser 98.7 8.3E-06 1.8E-10 78.9 23.3 233 111-375 400-633 (777)
103 KOG1128 Uncharacterized conser 98.7 1.2E-05 2.5E-10 77.9 24.2 231 229-481 402-634 (777)
104 KOG0985 Vesicle coat protein c 98.7 0.00013 2.9E-09 73.2 31.7 320 108-487 935-1266(1666)
105 KOG1070 rRNA processing protei 98.7 1.2E-05 2.7E-10 82.9 25.3 229 190-422 1458-1693(1710)
106 KOG2376 Signal recognition par 98.7 0.00013 2.8E-09 69.1 30.0 194 159-361 17-255 (652)
107 KOG0624 dsRNA-activated protei 98.7 0.0002 4.3E-09 63.4 28.7 302 154-464 38-370 (504)
108 PRK14720 transcript cleavage f 98.7 1.5E-05 3.3E-10 81.3 25.4 225 104-376 25-268 (906)
109 KOG4162 Predicted calmodulin-b 98.7 0.00054 1.2E-08 67.2 35.4 342 108-464 356-783 (799)
110 TIGR03302 OM_YfiO outer membra 98.7 9.1E-06 2E-10 72.0 21.2 187 154-359 33-232 (235)
111 KOG3617 WD40 and TPR repeat-co 98.6 0.00017 3.7E-09 70.9 30.0 166 118-321 809-993 (1416)
112 PRK14720 transcript cleavage f 98.6 3.7E-05 8.1E-10 78.6 26.9 171 151-359 28-198 (906)
113 KOG1070 rRNA processing protei 98.6 4.8E-05 1E-09 78.8 27.1 230 224-458 1457-1694(1710)
114 KOG3617 WD40 and TPR repeat-co 98.6 2.5E-05 5.3E-10 76.5 23.5 241 109-393 726-995 (1416)
115 TIGR03302 OM_YfiO outer membra 98.6 2.5E-05 5.4E-10 69.2 21.4 191 106-324 30-232 (235)
116 KOG3081 Vesicle coat complex C 98.6 6.2E-05 1.3E-09 64.2 22.0 258 188-464 8-271 (299)
117 PRK10370 formate-dependent nit 98.5 2.9E-05 6.2E-10 66.2 20.2 121 166-290 51-174 (198)
118 PRK10370 formate-dependent nit 98.5 4E-05 8.6E-10 65.3 20.5 119 343-464 52-173 (198)
119 COG5010 TadD Flp pilus assembl 98.5 1.7E-05 3.6E-10 67.6 17.8 165 151-321 64-228 (257)
120 KOG3616 Selective LIM binding 98.5 7.2E-05 1.6E-09 72.5 23.7 168 231-423 738-905 (1636)
121 COG5010 TadD Flp pilus assembl 98.5 2.9E-05 6.2E-10 66.2 17.6 160 113-287 70-229 (257)
122 KOG1127 TPR repeat-containing 98.4 0.00023 4.9E-09 71.6 25.4 163 111-288 494-658 (1238)
123 KOG0548 Molecular co-chaperone 98.4 0.0003 6.6E-09 66.0 24.5 104 162-270 10-114 (539)
124 PRK15179 Vi polysaccharide bio 98.4 0.00029 6.3E-09 71.4 26.3 181 292-482 83-267 (694)
125 KOG3081 Vesicle coat complex C 98.4 0.00057 1.2E-08 58.5 23.7 251 161-429 15-271 (299)
126 KOG2053 Mitochondrial inherita 98.4 0.0032 6.9E-08 63.0 32.1 226 164-395 19-256 (932)
127 PRK15179 Vi polysaccharide bio 98.4 0.00026 5.7E-09 71.7 25.9 239 151-413 24-268 (694)
128 COG4783 Putative Zn-dependent 98.4 0.001 2.3E-08 62.0 26.4 209 240-473 252-462 (484)
129 PRK15359 type III secretion sy 98.3 4.2E-05 9E-10 61.6 15.7 115 351-473 14-128 (144)
130 PRK15359 type III secretion sy 98.3 6.4E-05 1.4E-09 60.5 16.6 93 159-254 29-121 (144)
131 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.2E-11 50.8 4.6 33 437-469 2-34 (35)
132 COG4783 Putative Zn-dependent 98.3 0.00073 1.6E-08 63.0 23.9 243 159-429 207-454 (484)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 0.00011 2.4E-09 68.8 18.5 126 155-287 170-295 (395)
134 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.6E-11 50.6 4.2 31 228-258 3-33 (35)
135 PF13812 PPR_3: Pentatricopept 98.2 2.3E-06 5.1E-11 49.5 4.2 33 436-468 2-34 (34)
136 KOG1127 TPR repeat-containing 98.2 0.0015 3.3E-08 65.9 25.6 167 151-323 489-658 (1238)
137 TIGR02552 LcrH_SycD type III s 98.2 9.7E-05 2.1E-09 59.0 14.7 108 365-476 17-124 (135)
138 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.8E-11 49.0 4.3 31 227-257 3-33 (34)
139 KOG3060 Uncharacterized conser 98.2 0.003 6.5E-08 53.9 23.1 189 237-430 24-221 (289)
140 TIGR02552 LcrH_SycD type III s 98.2 0.00013 2.9E-09 58.1 15.1 99 153-254 16-114 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0003 6.4E-09 66.0 18.1 123 264-392 173-295 (395)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00034 7.4E-09 56.5 15.4 126 333-461 15-144 (145)
143 PF10037 MRP-S27: Mitochondria 98.0 9E-05 2E-09 69.7 12.8 120 364-483 65-186 (429)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00034 7.3E-09 56.5 14.5 126 157-285 15-143 (145)
145 PF10037 MRP-S27: Mitochondria 98.0 0.00012 2.6E-09 68.9 13.3 124 255-378 61-186 (429)
146 KOG3060 Uncharacterized conser 98.0 0.0073 1.6E-07 51.6 22.9 188 202-394 24-220 (289)
147 KOG1914 mRNA cleavage and poly 98.0 0.016 3.4E-07 55.1 35.3 152 311-464 347-501 (656)
148 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.2E-10 45.6 3.5 30 437-466 2-31 (31)
149 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.5E-10 45.3 3.6 27 228-254 3-29 (31)
150 PF08579 RPM2: Mitochondrial r 97.9 0.00017 3.7E-09 53.1 10.0 85 371-482 31-116 (120)
151 PF08579 RPM2: Mitochondrial r 97.9 0.00018 3.8E-09 53.0 9.9 75 196-270 31-114 (120)
152 PRK10866 outer membrane biogen 97.9 0.015 3.3E-07 51.3 23.8 56 371-426 181-238 (243)
153 KOG2053 Mitochondrial inherita 97.8 0.044 9.5E-07 55.3 36.7 228 117-362 17-258 (932)
154 PF06239 ECSIT: Evolutionarily 97.8 0.00042 9.1E-09 57.8 12.1 51 187-237 44-99 (228)
155 PF14938 SNAP: Soluble NSF att 97.8 0.0038 8.3E-08 56.8 19.4 173 155-358 36-224 (282)
156 PF04840 Vps16_C: Vps16, C-ter 97.8 0.025 5.5E-07 51.9 24.4 112 330-461 177-288 (319)
157 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0012 2.7E-08 51.0 14.2 100 156-255 4-106 (119)
158 KOG2041 WD40 repeat protein [G 97.8 0.0096 2.1E-07 58.1 21.1 107 191-320 797-903 (1189)
159 cd00189 TPR Tetratricopeptide 97.7 0.00065 1.4E-08 49.8 11.3 94 157-253 3-96 (100)
160 PRK02603 photosystem I assembl 97.7 0.0022 4.8E-08 53.5 15.3 89 189-278 34-124 (172)
161 cd00189 TPR Tetratricopeptide 97.7 0.00065 1.4E-08 49.8 11.0 94 193-288 3-96 (100)
162 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0021 4.5E-08 49.7 13.7 99 192-290 4-106 (119)
163 PF12895 Apc3: Anaphase-promot 97.7 0.00012 2.5E-09 52.8 5.8 82 167-250 2-83 (84)
164 PRK02603 photosystem I assembl 97.7 0.0027 5.9E-08 53.0 14.9 96 153-249 34-130 (172)
165 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.8E-08 54.7 12.8 96 189-285 34-138 (168)
166 PF05843 Suf: Suppressor of fo 97.6 0.0025 5.5E-08 57.7 14.9 131 110-254 2-136 (280)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00012 2.7E-09 52.7 5.0 80 204-285 3-83 (84)
168 PLN03088 SGT1, suppressor of 97.6 0.0023 5E-08 60.2 14.8 91 337-429 9-99 (356)
169 PF13525 YfiO: Outer membrane 97.6 0.018 3.9E-07 49.5 19.1 165 234-419 14-197 (203)
170 PF05843 Suf: Suppressor of fo 97.6 0.0018 4E-08 58.6 13.5 130 297-429 3-136 (280)
171 PRK10866 outer membrane biogen 97.6 0.047 1E-06 48.2 22.7 26 159-184 74-99 (243)
172 PRK15363 pathogenicity island 97.6 0.0028 6.1E-08 50.5 12.6 96 156-254 37-132 (157)
173 CHL00033 ycf3 photosystem I as 97.6 0.0026 5.7E-08 52.9 13.1 121 365-486 35-167 (168)
174 PF14938 SNAP: Soluble NSF att 97.5 0.02 4.4E-07 52.1 19.8 178 111-325 37-226 (282)
175 PRK15363 pathogenicity island 97.5 0.0038 8.2E-08 49.8 12.5 91 231-323 41-131 (157)
176 KOG2796 Uncharacterized conser 97.5 0.024 5.2E-07 48.8 17.6 131 263-394 180-315 (366)
177 KOG0550 Molecular chaperone (D 97.5 0.033 7.1E-07 51.2 19.5 161 159-325 54-233 (486)
178 PF06239 ECSIT: Evolutionarily 97.5 0.0021 4.6E-08 53.7 11.2 102 259-379 46-152 (228)
179 PLN03088 SGT1, suppressor of 97.5 0.0044 9.5E-08 58.3 14.8 93 160-255 8-100 (356)
180 PF13525 YfiO: Outer membrane 97.4 0.037 8E-07 47.5 19.0 65 155-219 6-71 (203)
181 PRK10153 DNA-binding transcrip 97.3 0.016 3.5E-07 57.2 17.4 61 400-462 420-480 (517)
182 KOG0553 TPR repeat-containing 97.3 0.0038 8.2E-08 54.7 11.5 97 377-478 93-190 (304)
183 PRK10153 DNA-binding transcrip 97.3 0.021 4.5E-07 56.4 17.8 137 105-254 333-482 (517)
184 KOG2280 Vacuolar assembly/sort 97.3 0.24 5.2E-06 49.3 25.0 128 114-253 442-574 (829)
185 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3.1E-08 44.8 6.7 53 165-219 2-54 (68)
186 KOG1538 Uncharacterized conser 97.2 0.039 8.5E-07 53.5 17.9 88 157-250 559-657 (1081)
187 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.19 4.2E-06 46.9 30.8 144 331-480 398-545 (660)
188 PF12688 TPR_5: Tetratrico pep 97.2 0.024 5.2E-07 43.6 13.3 104 372-481 8-117 (120)
189 KOG1130 Predicted G-alpha GTPa 97.2 0.012 2.6E-07 53.8 13.2 264 161-426 24-341 (639)
190 KOG0553 TPR repeat-containing 97.2 0.0071 1.5E-07 53.1 11.3 87 270-358 91-177 (304)
191 COG4235 Cytochrome c biogenesi 97.1 0.0095 2.1E-07 52.6 12.0 101 187-289 153-256 (287)
192 COG4235 Cytochrome c biogenesi 97.1 0.048 1E-06 48.3 15.6 121 353-478 145-268 (287)
193 KOG2796 Uncharacterized conser 97.1 0.17 3.8E-06 43.7 21.8 131 298-429 180-315 (366)
194 KOG2041 WD40 repeat protein [G 97.1 0.27 5.9E-06 48.5 21.7 178 294-484 851-1071(1189)
195 PF14559 TPR_19: Tetratricopep 97.1 0.0027 5.9E-08 43.4 6.6 64 411-477 2-65 (68)
196 PF13432 TPR_16: Tetratricopep 97.1 0.0054 1.2E-07 41.5 7.9 55 162-218 5-59 (65)
197 PF09205 DUF1955: Domain of un 97.0 0.081 1.8E-06 40.5 14.4 65 366-431 87-151 (161)
198 KOG1130 Predicted G-alpha GTPa 97.0 0.015 3.2E-07 53.3 12.2 272 116-394 24-344 (639)
199 PF12688 TPR_5: Tetratrico pep 97.0 0.058 1.3E-06 41.4 14.0 53 270-322 11-65 (120)
200 PF13414 TPR_11: TPR repeat; P 97.0 0.0041 8.8E-08 42.7 7.0 60 227-287 5-65 (69)
201 PF13432 TPR_16: Tetratricopep 97.0 0.0045 9.7E-08 41.9 7.0 52 235-287 7-58 (65)
202 PF03704 BTAD: Bacterial trans 97.0 0.022 4.8E-07 46.0 12.2 119 163-299 15-140 (146)
203 PF03704 BTAD: Bacterial trans 96.9 0.039 8.4E-07 44.5 13.1 70 192-262 64-138 (146)
204 PF13414 TPR_11: TPR repeat; P 96.9 0.0069 1.5E-07 41.5 7.5 63 154-218 3-66 (69)
205 PRK10803 tol-pal system protei 96.9 0.024 5.1E-07 50.6 12.6 94 193-288 146-245 (263)
206 PF13281 DUF4071: Domain of un 96.9 0.34 7.3E-06 45.2 20.2 32 433-464 303-334 (374)
207 PRK10803 tol-pal system protei 96.9 0.031 6.7E-07 49.8 13.2 98 154-254 143-246 (263)
208 PF12921 ATP13: Mitochondrial 96.9 0.031 6.7E-07 43.4 11.5 101 364-484 1-102 (126)
209 KOG0550 Molecular chaperone (D 96.8 0.41 8.9E-06 44.3 22.0 257 117-394 57-350 (486)
210 PF13281 DUF4071: Domain of un 96.8 0.43 9.3E-06 44.5 20.5 31 364-394 304-334 (374)
211 PF04840 Vps16_C: Vps16, C-ter 96.8 0.4 8.7E-06 44.1 22.5 105 228-352 180-284 (319)
212 COG4700 Uncharacterized protei 96.8 0.21 4.6E-06 40.9 18.2 119 301-421 95-214 (251)
213 PF13424 TPR_12: Tetratricopep 96.8 0.0064 1.4E-07 42.9 6.8 66 152-217 3-73 (78)
214 PRK15331 chaperone protein Sic 96.8 0.042 9.2E-07 44.2 11.8 93 159-254 42-134 (165)
215 COG4700 Uncharacterized protei 96.8 0.24 5.1E-06 40.6 18.2 133 325-461 84-219 (251)
216 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.54 1.2E-05 44.1 27.1 119 365-487 397-519 (660)
217 KOG1585 Protein required for f 96.7 0.19 4.2E-06 43.0 15.5 208 107-352 29-249 (308)
218 PF12921 ATP13: Mitochondrial 96.5 0.051 1.1E-06 42.2 10.6 98 294-411 1-99 (126)
219 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.12 2.5E-06 48.9 14.7 69 148-219 69-141 (453)
220 PF07079 DUF1347: Protein of u 96.5 0.77 1.7E-05 43.2 34.9 145 118-271 15-178 (549)
221 PF09205 DUF1955: Domain of un 96.5 0.2 4.4E-06 38.4 12.7 139 307-467 14-152 (161)
222 COG3898 Uncharacterized membra 96.4 0.77 1.7E-05 42.3 35.9 295 156-468 84-396 (531)
223 COG4105 ComL DNA uptake lipopr 96.4 0.59 1.3E-05 40.7 21.0 58 371-429 173-233 (254)
224 PRK15331 chaperone protein Sic 96.3 0.18 3.9E-06 40.7 12.8 87 235-323 47-133 (165)
225 PF13371 TPR_9: Tetratricopept 96.3 0.033 7.2E-07 38.5 7.8 54 339-393 4-57 (73)
226 PF13371 TPR_9: Tetratricopept 96.3 0.024 5.2E-07 39.3 6.9 55 163-219 4-58 (73)
227 KOG3941 Intermediate in Toll s 96.2 0.044 9.6E-07 47.7 9.3 100 187-286 64-185 (406)
228 PF13424 TPR_12: Tetratricopep 96.1 0.016 3.5E-07 40.8 5.6 25 262-286 48-72 (78)
229 KOG1538 Uncharacterized conser 96.0 0.44 9.5E-06 46.7 15.8 87 296-393 748-845 (1081)
230 COG1729 Uncharacterized protei 96.0 0.13 2.9E-06 45.0 11.2 100 111-219 144-244 (262)
231 PF04053 Coatomer_WDAD: Coatom 95.9 0.25 5.3E-06 47.8 14.0 160 161-355 268-427 (443)
232 PF04053 Coatomer_WDAD: Coatom 95.9 0.33 7.2E-06 46.9 14.8 158 116-320 268-427 (443)
233 PF08631 SPO22: Meiosis protei 95.9 1.3 2.9E-05 40.1 25.8 124 165-289 4-150 (278)
234 KOG2280 Vacuolar assembly/sort 95.6 2.8 6.1E-05 42.2 25.5 307 159-490 442-790 (829)
235 KOG3941 Intermediate in Toll s 95.6 0.12 2.5E-06 45.2 9.2 98 224-321 66-185 (406)
236 COG4649 Uncharacterized protei 95.6 1 2.2E-05 36.5 14.1 126 164-289 68-196 (221)
237 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.27 5.8E-06 46.6 12.1 66 187-254 72-141 (453)
238 KOG1920 IkappaB kinase complex 95.5 4.2 9.1E-05 43.3 25.7 31 187-218 788-820 (1265)
239 smart00299 CLH Clathrin heavy 95.5 1 2.2E-05 35.9 15.1 11 449-459 110-120 (140)
240 KOG2114 Vacuolar assembly/sort 95.4 0.43 9.3E-06 48.2 13.6 176 157-356 337-516 (933)
241 KOG1941 Acetylcholine receptor 95.4 1.2 2.7E-05 40.6 15.0 156 201-356 17-188 (518)
242 smart00299 CLH Clathrin heavy 95.4 1.1 2.4E-05 35.7 15.7 41 266-307 13-53 (140)
243 COG4105 ComL DNA uptake lipopr 95.2 2 4.3E-05 37.5 23.7 80 157-236 37-117 (254)
244 KOG0543 FKBP-type peptidyl-pro 95.1 0.67 1.4E-05 43.0 13.0 141 159-323 213-354 (397)
245 KOG1920 IkappaB kinase complex 95.1 3.5 7.6E-05 43.8 19.2 129 113-253 681-820 (1265)
246 COG3898 Uncharacterized membra 95.0 2.9 6.3E-05 38.7 34.2 307 92-429 72-392 (531)
247 COG1729 Uncharacterized protei 94.9 0.72 1.6E-05 40.5 12.1 97 367-464 144-244 (262)
248 PF10300 DUF3808: Protein of u 94.9 2.8 6.1E-05 41.2 17.8 161 299-462 192-374 (468)
249 COG0457 NrfG FOG: TPR repeat [ 94.8 2.4 5.2E-05 36.5 27.6 120 168-288 37-158 (291)
250 PF13512 TPR_18: Tetratricopep 94.7 1.4 3.1E-05 34.7 12.1 82 157-238 13-95 (142)
251 PF04184 ST7: ST7 protein; In 94.6 4.4 9.6E-05 39.0 20.7 57 335-391 264-321 (539)
252 PF13512 TPR_18: Tetratricopep 94.6 1 2.2E-05 35.5 11.1 69 307-375 22-92 (142)
253 KOG1941 Acetylcholine receptor 94.6 1.1 2.4E-05 40.9 12.7 232 162-393 14-274 (518)
254 COG0457 NrfG FOG: TPR repeat [ 94.5 2.9 6.2E-05 36.0 29.8 118 204-322 37-157 (291)
255 COG3118 Thioredoxin domain-con 94.3 3.7 8E-05 36.7 17.0 141 304-449 143-286 (304)
256 KOG4555 TPR repeat-containing 94.3 1.2 2.6E-05 34.3 10.5 90 339-430 52-145 (175)
257 KOG1258 mRNA processing protei 94.3 5.9 0.00013 39.0 28.8 132 110-254 46-180 (577)
258 KOG2610 Uncharacterized conser 94.3 1.5 3.2E-05 39.6 12.7 155 164-322 113-274 (491)
259 PF10300 DUF3808: Protein of u 94.3 6 0.00013 38.9 22.0 45 205-251 248-293 (468)
260 COG3629 DnrI DNA-binding trans 94.3 0.62 1.3E-05 41.5 10.4 76 228-304 156-236 (280)
261 KOG0543 FKBP-type peptidyl-pro 94.1 2.1 4.6E-05 39.8 13.8 140 301-464 214-355 (397)
262 KOG4555 TPR repeat-containing 94.0 0.84 1.8E-05 35.1 9.2 94 116-220 50-145 (175)
263 KOG2114 Vacuolar assembly/sort 94.0 1.4 3E-05 44.8 13.2 216 156-394 370-590 (933)
264 COG3118 Thioredoxin domain-con 93.9 4.5 9.7E-05 36.2 17.8 53 234-287 143-195 (304)
265 PF08631 SPO22: Meiosis protei 93.9 4.8 0.0001 36.5 26.4 164 296-462 85-273 (278)
266 PF13428 TPR_14: Tetratricopep 93.9 0.22 4.8E-06 30.3 5.1 39 156-196 3-41 (44)
267 PF07079 DUF1347: Protein of u 93.7 6.6 0.00014 37.3 28.0 141 163-307 15-179 (549)
268 COG3629 DnrI DNA-binding trans 93.6 0.86 1.9E-05 40.7 10.1 76 333-409 156-236 (280)
269 PF04184 ST7: ST7 protein; In 93.5 7.5 0.00016 37.5 17.1 77 367-443 261-339 (539)
270 PF13170 DUF4003: Protein of u 93.4 6.1 0.00013 36.1 22.2 49 277-325 79-133 (297)
271 PF13428 TPR_14: Tetratricopep 93.3 0.37 7.9E-06 29.3 5.4 17 235-251 11-27 (44)
272 PF10602 RPN7: 26S proteasome 93.2 1.7 3.6E-05 36.3 10.8 61 227-287 38-100 (177)
273 PF07035 Mic1: Colon cancer-as 93.2 4 8.7E-05 33.4 14.6 23 253-275 22-44 (167)
274 COG4785 NlpI Lipoprotein NlpI, 93.2 4.8 0.0001 34.2 16.6 67 151-219 96-162 (297)
275 PF09613 HrpB1_HrpK: Bacterial 93.2 3.8 8.3E-05 33.1 12.9 56 162-219 18-73 (160)
276 PF13170 DUF4003: Protein of u 93.1 6.9 0.00015 35.7 21.2 86 241-328 78-176 (297)
277 PF13176 TPR_7: Tetratricopept 92.7 0.31 6.7E-06 28.1 4.1 26 437-462 1-26 (36)
278 PF09613 HrpB1_HrpK: Bacterial 92.5 4.8 0.0001 32.5 13.4 119 191-316 8-130 (160)
279 PRK11906 transcriptional regul 92.5 11 0.00023 36.3 17.3 161 110-285 252-432 (458)
280 KOG4570 Uncharacterized conser 92.5 1.3 2.8E-05 39.6 9.3 96 157-254 67-164 (418)
281 KOG1464 COP9 signalosome, subu 92.4 7.3 0.00016 34.2 18.6 202 186-388 22-254 (440)
282 PF00637 Clathrin: Region in C 92.3 0.0088 1.9E-07 48.1 -3.8 129 336-486 13-141 (143)
283 COG4649 Uncharacterized protei 92.3 5.4 0.00012 32.6 13.6 20 374-393 176-195 (221)
284 KOG0276 Vesicle coat complex C 92.2 2 4.4E-05 42.0 11.0 43 202-250 649-691 (794)
285 PF13929 mRNA_stabil: mRNA sta 92.2 8.3 0.00018 34.5 15.7 119 364-482 163-290 (292)
286 PF07035 Mic1: Colon cancer-as 92.2 5.7 0.00012 32.5 15.8 30 213-242 17-46 (167)
287 PRK11906 transcriptional regul 91.9 12 0.00027 35.9 16.8 116 241-358 274-400 (458)
288 KOG2610 Uncharacterized conser 91.9 9.8 0.00021 34.7 20.6 154 201-357 114-274 (491)
289 PF04097 Nic96: Nup93/Nic96; 91.8 17 0.00037 37.3 18.2 59 159-219 116-181 (613)
290 PF10602 RPN7: 26S proteasome 91.6 2.1 4.6E-05 35.7 9.5 95 366-462 37-140 (177)
291 KOG1550 Extracellular protein 91.4 17 0.00038 36.7 22.5 84 203-290 262-358 (552)
292 PF13176 TPR_7: Tetratricopept 91.2 0.55 1.2E-05 27.0 4.1 23 193-215 2-24 (36)
293 TIGR02561 HrpB1_HrpK type III 90.7 6.6 0.00014 31.2 10.6 54 165-220 21-74 (153)
294 PRK09687 putative lyase; Provi 90.7 13 0.00028 33.8 27.5 138 329-482 141-279 (280)
295 PF13929 mRNA_stabil: mRNA sta 90.6 12 0.00027 33.5 15.7 115 170-284 144-262 (292)
296 PF02284 COX5A: Cytochrome c o 90.1 5.6 0.00012 29.2 9.0 60 383-443 28-87 (108)
297 KOG1924 RhoA GTPase effector D 90.0 0.55 1.2E-05 47.0 5.1 12 297-308 840-851 (1102)
298 TIGR02561 HrpB1_HrpK type III 89.6 9.1 0.0002 30.5 12.5 63 191-255 8-74 (153)
299 KOG1585 Protein required for f 89.5 13 0.00029 32.3 17.7 207 155-388 32-250 (308)
300 KOG1550 Extracellular protein 89.3 27 0.00058 35.4 27.9 181 205-395 227-427 (552)
301 KOG0276 Vesicle coat complex C 89.2 4.9 0.00011 39.5 10.6 98 236-354 648-745 (794)
302 KOG4570 Uncharacterized conser 88.9 5.3 0.00012 35.9 9.8 45 380-424 115-159 (418)
303 COG1747 Uncharacterized N-term 88.8 24 0.00053 34.3 25.2 180 187-374 63-248 (711)
304 PF11207 DUF2989: Protein of u 88.7 5.4 0.00012 33.6 9.4 72 242-314 123-197 (203)
305 PF13374 TPR_10: Tetratricopep 87.8 1.5 3.2E-05 25.9 4.4 29 435-463 2-30 (42)
306 PF13431 TPR_17: Tetratricopep 87.8 1.1 2.4E-05 25.4 3.5 24 187-210 10-33 (34)
307 PF00515 TPR_1: Tetratricopept 87.5 2.2 4.8E-05 23.8 4.8 29 155-183 2-30 (34)
308 PF00515 TPR_1: Tetratricopept 87.4 1.1 2.4E-05 25.1 3.5 28 436-463 2-29 (34)
309 PF10345 Cohesin_load: Cohesin 87.4 38 0.00082 34.9 30.3 64 411-474 372-451 (608)
310 PHA02875 ankyrin repeat protei 87.1 23 0.0005 34.3 14.5 51 194-248 36-88 (413)
311 COG2909 MalT ATP-dependent tra 87.0 42 0.00092 35.1 28.3 225 236-460 426-684 (894)
312 KOG2063 Vacuolar assembly/sort 87.0 28 0.00061 36.8 15.2 26 263-288 507-532 (877)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 6.5 0.00014 28.6 7.5 46 383-428 25-70 (103)
314 PF13431 TPR_17: Tetratricopep 86.8 0.93 2E-05 25.7 2.8 20 260-279 13-32 (34)
315 PF07719 TPR_2: Tetratricopept 86.5 2.7 5.8E-05 23.3 4.8 28 156-183 3-30 (34)
316 PF13762 MNE1: Mitochondrial s 86.5 8 0.00017 30.7 8.7 80 156-235 41-125 (145)
317 PF07719 TPR_2: Tetratricopept 86.1 1.4 3.1E-05 24.5 3.5 27 437-463 3-29 (34)
318 PF07163 Pex26: Pex26 protein; 85.6 9.1 0.0002 34.0 9.3 89 230-318 88-181 (309)
319 PF11207 DUF2989: Protein of u 85.4 9.7 0.00021 32.1 9.1 17 436-452 179-195 (203)
320 PF13374 TPR_10: Tetratricopep 85.4 2.3 4.9E-05 25.0 4.3 26 262-287 4-29 (42)
321 KOG1924 RhoA GTPase effector D 85.4 1.7 3.7E-05 43.7 5.4 56 220-276 796-854 (1102)
322 PF00637 Clathrin: Region in C 84.8 0.39 8.5E-06 38.5 0.8 85 370-461 12-96 (143)
323 COG2909 MalT ATP-dependent tra 84.5 57 0.0012 34.2 27.8 225 201-425 426-684 (894)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 84.5 9.8 0.00021 27.7 7.5 61 347-408 24-84 (103)
325 PF02284 COX5A: Cytochrome c o 84.4 7.5 0.00016 28.6 6.9 47 208-254 28-74 (108)
326 KOG2066 Vacuolar assembly/sort 84.3 54 0.0012 33.8 27.1 105 116-237 363-467 (846)
327 KOG0890 Protein kinase of the 84.1 97 0.0021 36.6 25.9 318 114-464 1388-1731(2382)
328 COG4455 ImpE Protein of avirul 83.7 11 0.00023 32.2 8.6 76 157-234 4-81 (273)
329 PF13174 TPR_6: Tetratricopept 83.7 2.6 5.7E-05 23.1 3.8 26 158-183 4-29 (33)
330 PF07163 Pex26: Pex26 protein; 83.0 34 0.00074 30.5 13.7 86 161-248 90-181 (309)
331 KOG1258 mRNA processing protei 82.8 54 0.0012 32.7 32.6 351 111-484 81-489 (577)
332 KOG4648 Uncharacterized conser 81.9 5.8 0.00013 36.1 6.9 89 338-428 105-193 (536)
333 PF14669 Asp_Glu_race_2: Putat 81.9 29 0.00063 29.0 13.6 25 400-424 181-205 (233)
334 KOG1464 COP9 signalosome, subu 81.7 37 0.0008 30.1 19.1 203 219-421 20-252 (440)
335 COG4455 ImpE Protein of avirul 81.4 12 0.00026 32.0 8.0 78 193-271 4-83 (273)
336 PRK09687 putative lyase; Provi 81.4 42 0.00091 30.5 29.0 234 188-446 35-278 (280)
337 PF02259 FAT: FAT domain; Int 80.7 50 0.0011 30.9 23.9 55 196-254 4-58 (352)
338 PF13181 TPR_8: Tetratricopept 80.5 5.4 0.00012 22.1 4.4 28 436-463 2-29 (34)
339 TIGR03504 FimV_Cterm FimV C-te 80.5 4.3 9.4E-05 24.6 3.9 24 441-464 5-28 (44)
340 KOG2066 Vacuolar assembly/sort 80.2 77 0.0017 32.8 21.8 151 160-322 362-532 (846)
341 COG2976 Uncharacterized protei 80.0 35 0.00076 28.7 15.3 89 372-465 96-189 (207)
342 KOG0890 Protein kinase of the 79.6 1.4E+02 0.003 35.4 23.3 154 159-319 1388-1542(2382)
343 PRK15180 Vi polysaccharide bio 79.4 20 0.00043 34.5 9.6 122 305-430 299-421 (831)
344 PF13181 TPR_8: Tetratricopept 79.3 6.2 0.00013 21.9 4.4 29 155-183 2-30 (34)
345 KOG4234 TPR repeat-containing 79.2 33 0.00072 29.0 9.8 90 338-429 103-197 (271)
346 COG1747 Uncharacterized N-term 78.9 68 0.0015 31.4 25.2 95 224-323 65-159 (711)
347 COG5159 RPN6 26S proteasome re 78.2 45 0.00098 29.9 10.8 34 439-472 129-166 (421)
348 PF07721 TPR_4: Tetratricopept 78.0 4.3 9.2E-05 21.2 3.1 21 439-459 5-25 (26)
349 COG0790 FOG: TPR repeat, SEL1 77.2 58 0.0012 29.6 22.2 151 166-326 53-222 (292)
350 KOG4234 TPR repeat-containing 76.5 41 0.0009 28.4 9.6 56 268-324 142-197 (271)
351 PF13174 TPR_6: Tetratricopept 76.2 5.5 0.00012 21.8 3.5 25 440-464 5-29 (33)
352 PF06552 TOM20_plant: Plant sp 75.9 45 0.00097 27.7 10.4 25 419-445 99-123 (186)
353 COG3947 Response regulator con 75.8 61 0.0013 29.2 18.0 42 206-249 149-190 (361)
354 COG4785 NlpI Lipoprotein NlpI, 75.8 51 0.0011 28.3 15.9 29 226-254 100-128 (297)
355 KOG2297 Predicted translation 75.7 63 0.0014 29.3 15.7 21 260-280 321-341 (412)
356 KOG0403 Neoplastic transformat 75.6 79 0.0017 30.4 16.1 57 405-464 514-572 (645)
357 PF10345 Cohesin_load: Cohesin 75.4 1E+02 0.0023 31.7 34.1 132 113-251 104-251 (608)
358 KOG0687 26S proteasome regulat 75.2 67 0.0015 29.4 15.6 22 299-320 108-129 (393)
359 PF10579 Rapsyn_N: Rapsyn N-te 74.5 12 0.00025 26.1 5.1 47 412-458 18-66 (80)
360 PRK15180 Vi polysaccharide bio 74.1 27 0.00058 33.6 9.0 117 202-322 301-418 (831)
361 KOG3636 Uncharacterized conser 74.1 84 0.0018 30.0 14.6 185 190-376 55-271 (669)
362 COG3947 Response regulator con 73.9 69 0.0015 28.9 17.3 72 401-473 280-356 (361)
363 TIGR03504 FimV_Cterm FimV C-te 73.7 7.8 0.00017 23.5 3.7 21 267-287 6-26 (44)
364 KOG0687 26S proteasome regulat 72.9 77 0.0017 29.1 14.4 97 226-324 105-210 (393)
365 PF11848 DUF3368: Domain of un 72.8 17 0.00036 22.6 5.2 33 446-478 13-45 (48)
366 COG2976 Uncharacterized protei 72.2 59 0.0013 27.4 13.6 87 198-289 97-188 (207)
367 PF10475 DUF2450: Protein of u 71.8 41 0.00089 30.7 9.8 52 196-253 104-155 (291)
368 KOG0991 Replication factor C, 71.5 69 0.0015 27.9 12.3 138 298-445 133-282 (333)
369 cd08819 CARD_MDA5_2 Caspase ac 71.1 30 0.00066 24.7 6.6 34 343-381 49-82 (88)
370 smart00028 TPR Tetratricopepti 70.0 9.8 0.00021 19.8 3.7 27 437-463 3-29 (34)
371 cd08819 CARD_MDA5_2 Caspase ac 68.8 40 0.00086 24.1 7.0 64 280-349 22-85 (88)
372 KOG2063 Vacuolar assembly/sort 68.7 1.7E+02 0.0037 31.3 18.4 115 228-342 507-638 (877)
373 PF10579 Rapsyn_N: Rapsyn N-te 68.2 20 0.00044 25.0 5.2 46 377-422 18-65 (80)
374 PF11846 DUF3366: Domain of un 68.0 28 0.00061 29.4 7.5 33 186-218 140-172 (193)
375 KOG1114 Tripeptidyl peptidase 67.9 1.8E+02 0.0038 31.2 14.7 51 434-484 1230-1281(1304)
376 PF02259 FAT: FAT domain; Int 67.9 1.1E+02 0.0023 28.7 23.5 194 115-324 4-213 (352)
377 KOG2659 LisH motif-containing 67.7 82 0.0018 27.3 10.1 97 187-285 23-128 (228)
378 PF04097 Nic96: Nup93/Nic96; 67.5 1.6E+02 0.0034 30.5 16.6 63 190-254 112-181 (613)
379 KOG1498 26S proteasome regulat 66.4 1.2E+02 0.0026 28.7 17.0 170 103-290 46-242 (439)
380 PF14669 Asp_Glu_race_2: Putat 66.2 79 0.0017 26.6 14.6 27 434-460 180-206 (233)
381 PF14689 SPOB_a: Sensor_kinase 66.1 18 0.00039 23.9 4.6 29 434-462 22-50 (62)
382 COG5108 RPO41 Mitochondrial DN 65.9 40 0.00087 34.0 8.5 91 195-288 33-131 (1117)
383 COG2178 Predicted RNA-binding 65.4 83 0.0018 26.5 9.1 26 193-218 32-57 (204)
384 PF11848 DUF3368: Domain of un 65.2 25 0.00053 21.8 4.8 27 274-300 16-42 (48)
385 PF14561 TPR_20: Tetratricopep 65.2 50 0.0011 23.9 7.4 55 151-205 19-73 (90)
386 TIGR02508 type_III_yscG type I 64.8 54 0.0012 24.2 8.6 51 338-394 47-97 (115)
387 PF04910 Tcf25: Transcriptiona 64.6 1.3E+02 0.0028 28.5 19.2 110 108-218 39-167 (360)
388 KOG2396 HAT (Half-A-TPR) repea 64.5 1.5E+02 0.0032 29.1 33.9 88 397-487 456-547 (568)
389 KOG2908 26S proteasome regulat 64.4 97 0.0021 28.6 10.0 55 339-393 84-143 (380)
390 PF07575 Nucleopor_Nup85: Nup8 63.9 71 0.0015 32.5 10.6 31 378-408 508-538 (566)
391 KOG1114 Tripeptidyl peptidase 63.9 2.1E+02 0.0046 30.7 15.1 80 382-462 1213-1293(1304)
392 KOG2582 COP9 signalosome, subu 63.4 1.3E+02 0.0028 28.1 19.5 130 106-253 72-211 (422)
393 PHA02875 ankyrin repeat protei 62.5 1.5E+02 0.0033 28.6 16.3 20 195-214 70-89 (413)
394 PF06552 TOM20_plant: Plant sp 62.2 88 0.0019 26.1 8.6 76 170-256 51-138 (186)
395 PF13762 MNE1: Mitochondrial s 61.6 82 0.0018 25.2 12.3 81 193-273 42-128 (145)
396 PF14689 SPOB_a: Sensor_kinase 61.5 29 0.00063 22.9 4.9 28 191-218 24-51 (62)
397 KOG4077 Cytochrome c oxidase, 61.2 75 0.0016 24.6 7.5 59 383-442 67-125 (149)
398 COG0735 Fur Fe2+/Zn2+ uptake r 61.0 62 0.0014 25.9 7.7 58 321-379 12-69 (145)
399 COG5187 RPN7 26S proteasome re 60.7 1.3E+02 0.0028 27.2 14.0 171 277-449 55-241 (412)
400 KOG4648 Uncharacterized conser 60.6 60 0.0013 29.9 8.1 53 268-321 105-157 (536)
401 cd00280 TRFH Telomeric Repeat 60.3 74 0.0016 26.5 7.9 65 381-448 85-156 (200)
402 PRK11619 lytic murein transgly 59.8 2.2E+02 0.0048 29.6 28.1 253 193-462 102-373 (644)
403 PF14853 Fis1_TPR_C: Fis1 C-te 59.8 28 0.00061 22.2 4.4 34 442-477 8-41 (53)
404 KOG2471 TPR repeat-containing 59.6 1.8E+02 0.0039 28.5 13.0 106 375-482 250-381 (696)
405 TIGR02508 type_III_yscG type I 59.5 69 0.0015 23.7 8.2 50 410-465 49-98 (115)
406 PRK10564 maltose regulon perip 59.5 20 0.00043 32.4 5.0 36 223-258 254-290 (303)
407 PF11846 DUF3366: Domain of un 59.4 54 0.0012 27.7 7.6 32 397-428 141-172 (193)
408 KOG0128 RNA-binding protein SA 59.3 2.4E+02 0.0051 29.7 29.4 340 108-469 112-531 (881)
409 KOG4567 GTPase-activating prot 58.6 59 0.0013 29.5 7.6 71 245-320 263-343 (370)
410 PF12862 Apc5: Anaphase-promot 56.7 74 0.0016 23.1 7.0 77 119-197 8-84 (94)
411 PF04762 IKI3: IKI3 family; I 56.3 3E+02 0.0066 30.1 16.7 24 157-180 697-720 (928)
412 COG5108 RPO41 Mitochondrial DN 56.0 82 0.0018 32.0 8.8 75 300-377 33-115 (1117)
413 KOG0686 COP9 signalosome, subu 55.5 1.9E+02 0.0042 27.6 14.0 179 297-478 152-352 (466)
414 KOG4567 GTPase-activating prot 55.0 83 0.0018 28.6 7.9 58 350-412 263-320 (370)
415 PRK10564 maltose regulon perip 54.4 28 0.00061 31.5 5.1 42 397-438 253-295 (303)
416 COG0735 Fur Fe2+/Zn2+ uptake r 53.2 74 0.0016 25.5 7.0 57 250-307 11-67 (145)
417 PRK09857 putative transposase; 53.2 1.8E+02 0.004 26.6 10.8 65 404-469 210-274 (292)
418 KOG2659 LisH motif-containing 52.4 1.6E+02 0.0034 25.6 9.4 21 372-392 71-91 (228)
419 KOG1586 Protein required for f 52.2 1.6E+02 0.0036 25.8 18.9 239 164-442 24-272 (288)
420 PF11663 Toxin_YhaV: Toxin wit 51.9 19 0.00042 28.0 3.2 30 238-269 108-137 (140)
421 KOG4279 Serine/threonine prote 51.8 3E+02 0.0066 28.7 13.8 96 154-253 201-315 (1226)
422 PRK13342 recombination factor 51.8 2.4E+02 0.0051 27.4 19.4 37 378-414 243-279 (413)
423 PF11663 Toxin_YhaV: Toxin wit 51.7 16 0.00035 28.4 2.7 33 446-480 106-138 (140)
424 PRK10941 hypothetical protein; 51.4 1.9E+02 0.004 26.1 10.5 80 155-236 182-262 (269)
425 PRK08691 DNA polymerase III su 50.2 2.3E+02 0.005 29.6 11.2 47 346-394 180-227 (709)
426 KOG0991 Replication factor C, 49.8 1.8E+02 0.0039 25.5 15.8 138 262-409 132-281 (333)
427 PRK07003 DNA polymerase III su 49.7 3.5E+02 0.0075 28.8 14.9 84 171-257 181-277 (830)
428 KOG2034 Vacuolar sorting prote 49.5 3.5E+02 0.0076 28.8 24.4 55 114-182 363-417 (911)
429 PF08424 NRDE-2: NRDE-2, neces 49.1 2.2E+02 0.0049 26.4 17.3 23 409-431 163-185 (321)
430 PF07304 SRA1: Steroid recepto 49.1 43 0.00093 27.2 5.0 30 109-138 90-119 (157)
431 PF11817 Foie-gras_1: Foie gra 49.0 91 0.002 27.7 7.6 21 160-180 184-204 (247)
432 PF11817 Foie-gras_1: Foie gra 49.0 90 0.0019 27.7 7.6 56 231-286 184-244 (247)
433 COG5178 PRP8 U5 snRNP spliceos 49.0 17 0.00036 38.9 3.2 29 10-38 2-30 (2365)
434 KOG4507 Uncharacterized conser 48.7 1.5E+02 0.0033 29.8 9.2 88 306-394 618-705 (886)
435 PF10475 DUF2450: Protein of u 48.6 1.7E+02 0.0037 26.7 9.5 53 230-288 103-155 (291)
436 PF09670 Cas_Cas02710: CRISPR- 48.5 2.5E+02 0.0054 26.9 10.9 51 202-253 143-197 (379)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 48.4 1.3E+02 0.0028 23.4 9.5 44 418-461 81-125 (126)
438 PRK07003 DNA polymerase III su 47.9 3.3E+02 0.0072 28.9 11.9 47 346-394 180-227 (830)
439 PF09986 DUF2225: Uncharacteri 47.8 1.8E+02 0.004 25.1 9.7 25 441-465 171-195 (214)
440 PF04190 DUF410: Protein of un 47.4 2.1E+02 0.0046 25.6 19.2 25 259-283 89-113 (260)
441 PF15297 CKAP2_C: Cytoskeleton 47.2 2.4E+02 0.0053 26.3 9.9 46 436-481 141-186 (353)
442 KOG4507 Uncharacterized conser 47.2 1.3E+02 0.0028 30.2 8.4 137 292-430 568-706 (886)
443 PRK14956 DNA polymerase III su 47.1 3E+02 0.0065 27.3 11.7 100 347-470 183-283 (484)
444 KOG4077 Cytochrome c oxidase, 47.1 1.4E+02 0.0029 23.3 9.9 47 348-394 67-113 (149)
445 KOG2297 Predicted translation 46.3 2.4E+02 0.0051 25.9 18.4 21 365-385 321-341 (412)
446 COG5159 RPN6 26S proteasome re 45.8 2.3E+02 0.005 25.6 16.5 53 231-283 9-68 (421)
447 PF14853 Fis1_TPR_C: Fis1 C-te 45.1 80 0.0017 20.1 5.2 29 371-401 7-35 (53)
448 KOG1923 Rac1 GTPase effector F 44.6 37 0.00081 34.7 4.7 48 91-139 369-417 (830)
449 PF12862 Apc5: Anaphase-promot 44.6 1.2E+02 0.0026 21.9 7.8 23 441-463 47-69 (94)
450 PF10366 Vps39_1: Vacuolar sor 44.6 1.3E+02 0.0029 22.5 7.7 27 367-393 41-67 (108)
451 PRK09857 putative transposase; 44.5 2.5E+02 0.0055 25.7 10.3 15 383-397 258-272 (292)
452 PF02847 MA3: MA3 domain; Int 43.9 1.1E+02 0.0024 22.9 6.5 21 196-216 8-28 (113)
453 PF03745 DUF309: Domain of unk 43.5 95 0.0021 20.5 5.5 15 203-217 12-26 (62)
454 PF09454 Vps23_core: Vps23 cor 43.4 45 0.00098 22.3 3.6 29 402-430 10-38 (65)
455 PF00244 14-3-3: 14-3-3 protei 43.3 2E+02 0.0043 25.4 8.7 163 196-358 7-197 (236)
456 PF09868 DUF2095: Uncharacteri 43.2 94 0.002 23.4 5.4 25 196-220 67-91 (128)
457 PF04190 DUF410: Protein of un 42.9 2.5E+02 0.0054 25.2 18.8 25 294-318 89-113 (260)
458 KOG0989 Replication factor C, 42.3 2.8E+02 0.0061 25.6 10.4 48 350-399 195-242 (346)
459 PF02847 MA3: MA3 domain; Int 42.2 1.4E+02 0.003 22.4 6.8 18 268-285 10-27 (113)
460 PF08311 Mad3_BUB1_I: Mad3/BUB 42.2 1.6E+02 0.0035 22.8 9.6 43 208-250 81-124 (126)
461 PRK11639 zinc uptake transcrip 41.9 1.6E+02 0.0034 24.3 7.4 37 238-274 38-74 (169)
462 PF10366 Vps39_1: Vacuolar sor 41.8 1.5E+02 0.0032 22.3 8.1 26 263-288 42-67 (108)
463 PRK11639 zinc uptake transcrip 41.6 1.5E+02 0.0033 24.4 7.3 60 251-311 17-76 (169)
464 COG2178 Predicted RNA-binding 41.2 2.2E+02 0.0048 24.1 10.7 18 446-463 132-149 (204)
465 PF12926 MOZART2: Mitotic-spin 41.2 1.3E+02 0.0029 21.5 7.9 43 421-463 29-71 (88)
466 PF11768 DUF3312: Protein of u 41.1 3.9E+02 0.0083 26.8 11.3 61 158-218 412-472 (545)
467 PRK10941 hypothetical protein; 40.9 2.7E+02 0.0059 25.1 10.7 79 193-272 184-263 (269)
468 PRK09462 fur ferric uptake reg 40.8 1.7E+02 0.0036 23.5 7.3 35 451-485 33-67 (148)
469 PHA02537 M terminase endonucle 40.7 2.5E+02 0.0055 24.6 10.0 17 448-464 191-207 (230)
470 PF09454 Vps23_core: Vps23 cor 40.2 67 0.0015 21.5 4.0 27 193-219 11-37 (65)
471 KOG4521 Nuclear pore complex, 40.1 5.7E+02 0.012 28.5 13.5 164 159-324 925-1131(1480)
472 PF12926 MOZART2: Mitotic-spin 40.0 1.4E+02 0.003 21.4 8.0 42 281-322 29-70 (88)
473 PRK14958 DNA polymerase III su 39.8 4.1E+02 0.0088 26.7 12.1 45 348-394 182-227 (509)
474 KOG0376 Serine-threonine phosp 39.5 49 0.0011 32.0 4.5 51 341-393 15-66 (476)
475 PF07575 Nucleopor_Nup85: Nup8 39.5 4.3E+02 0.0094 27.0 22.2 24 111-134 150-173 (566)
476 smart00638 LPD_N Lipoprotein N 39.4 4.3E+02 0.0094 27.0 24.0 248 152-406 308-573 (574)
477 cd07153 Fur_like Ferric uptake 39.2 75 0.0016 24.0 4.9 46 442-487 7-52 (116)
478 COG0790 FOG: TPR repeat, SEL1 38.9 3E+02 0.0065 24.9 25.4 85 237-327 53-145 (292)
479 PF04910 Tcf25: Transcriptiona 38.8 3.5E+02 0.0076 25.7 21.0 124 187-323 37-167 (360)
480 smart00386 HAT HAT (Half-A-TPR 38.5 63 0.0014 17.0 4.0 29 449-478 1-29 (33)
481 COG2256 MGS1 ATPase related to 37.7 3.8E+02 0.0082 25.8 15.0 49 297-345 248-299 (436)
482 PRK09462 fur ferric uptake reg 37.3 2.2E+02 0.0047 22.8 7.5 35 275-309 32-66 (148)
483 PF08424 NRDE-2: NRDE-2, neces 37.2 3.5E+02 0.0075 25.2 18.3 138 187-326 16-185 (321)
484 KOG0414 Chromosome condensatio 37.0 6.3E+02 0.014 28.1 16.0 115 373-489 531-656 (1251)
485 cd00280 TRFH Telomeric Repeat 36.6 2.6E+02 0.0056 23.5 10.6 23 266-288 117-139 (200)
486 KOG2005 26S proteasome regulat 36.2 5E+02 0.011 26.8 17.1 28 149-176 234-261 (878)
487 KOG0292 Vesicle coat complex C 36.2 2.3E+02 0.005 30.1 8.6 129 165-324 654-782 (1202)
488 PF04762 IKI3: IKI3 family; I 36.1 6.2E+02 0.014 27.8 16.2 132 112-254 697-843 (928)
489 PHA03100 ankyrin repeat protei 35.9 4.1E+02 0.0089 26.2 10.9 116 200-329 80-203 (480)
490 PRK13341 recombination factor 35.9 5.6E+02 0.012 27.2 17.6 47 367-414 261-307 (725)
491 KOG3364 Membrane protein invol 35.8 2.2E+02 0.0048 22.5 9.3 66 329-394 31-100 (149)
492 PF15297 CKAP2_C: Cytoskeleton 35.7 3.3E+02 0.0072 25.5 8.9 64 381-446 119-186 (353)
493 KOG0292 Vesicle coat complex C 35.5 1.4E+02 0.0031 31.5 7.2 111 154-289 672-782 (1202)
494 PF07064 RIC1: RIC1; InterPro 35.0 3.3E+02 0.0073 24.4 16.1 26 112-137 85-110 (258)
495 KOG1923 Rac1 GTPase effector F 34.8 5.6E+02 0.012 26.9 16.8 23 231-253 513-535 (830)
496 KOG0307 Vesicle coat complex C 34.7 4.2E+02 0.0092 28.9 10.5 118 8-136 907-1024(1049)
497 PF12793 SgrR_N: Sugar transpo 34.5 2.1E+02 0.0045 21.8 7.1 73 385-459 3-94 (115)
498 KOG2062 26S proteasome regulat 34.4 5.7E+02 0.012 26.8 21.4 302 170-488 39-358 (929)
499 PRK06645 DNA polymerase III su 34.4 4.9E+02 0.011 26.1 11.1 86 380-468 188-290 (507)
500 cd07153 Fur_like Ferric uptake 34.3 1.2E+02 0.0025 23.0 5.3 45 230-274 5-49 (116)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-61 Score=495.04 Aligned_cols=387 Identities=18% Similarity=0.226 Sum_probs=301.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+++|++|....-+.++..+++.++..|.+.|.+++|..+++.|.. .+..+|+.++.+|++.|
T Consensus 386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--------------pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--------------PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHhCc
Confidence 3558888888887655666777777777777777777777777777643 11467777777777778
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 248 (491)
++++|.++|++|.+. |..||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 452 ~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 452 DIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 888888887777775 6677777788888888888888888888888777777777778888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 249 REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE--LGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 249 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 8877777777777888888888877888888888877765 46777777788888878888888888888877777777
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCL 406 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 406 (491)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777788888888888888888888888777777777777888888887777777888888877777777777788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 011201 407 LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKS 486 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 486 (491)
|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888888887777777777777777778888888888888888888888777777777888888887888777777
Q ss_pred cccc
Q 011201 487 VRQT 490 (491)
Q Consensus 487 ~~A~ 490 (491)
++|.
T Consensus 771 e~A~ 774 (1060)
T PLN03218 771 DVGL 774 (1060)
T ss_pred HHHH
Confidence 7764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-60 Score=487.40 Aligned_cols=377 Identities=20% Similarity=0.304 Sum_probs=363.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+.+|..+.. |+..+|+.++.+|++.|+++.|..+|+.|.+.|..++ ..+|+.+|.+|++.|
T Consensus 422 ~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD----------~~tynsLI~~y~k~G 486 (1060)
T PLN03218 422 VKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD----------CKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCc
Confidence 3457888887754 8999999999999999999999999999999886544 689999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 248 (491)
++++|.++|++|.+. |..||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 487 ~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 487 KVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999986 7789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 249 REMRE--KGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 249 ~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 99986 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCL 406 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 406 (491)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 407 LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|++++..|.
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-59 Score=479.69 Aligned_cols=376 Identities=18% Similarity=0.253 Sum_probs=345.0
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+.+|.|+....++.|+..+|+.++.+|++.++++.+.+++..|.+.|..++ ..+++.++.+|++.|
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~----------~~~~n~Li~~y~k~g 172 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD----------QYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc----------hHHHHHHHHHHhcCC
Confidence 3568999999987777889999999999999999999999999999998876533 577888888888888
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------------------------
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP------------------------- 223 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p------------------------- 223 (491)
++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 173 ~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 173 MLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 88888888888863 788888888888888888888888888887666555
Q ss_pred ----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 011201 224 ----------DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 224 ----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 293 (491)
|..+||.||++|++.|++++|.++|++|.+ +|.++|+.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 455667888999999999999999999975 499999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE 373 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 373 (491)
|..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.||++|+++|++++|.++|++|.+ +|..+||+||.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999964 58999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 011201 374 GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST-KGLDPDGMTYHILVSGYTRENRRK 452 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~ 452 (491)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999976 699999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
+|.+++++| ++.|+..+|++|+.+|...|+++.|.
T Consensus 480 eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999887 78999999999999999999998774
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.5e-55 Score=444.68 Aligned_cols=374 Identities=16% Similarity=0.244 Sum_probs=344.3
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..+..++..+.. .++.||..+|+.++..|++.|+++.|..+|++|...+ ..+|+.++.+|++.|+
T Consensus 140 ~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~--------------~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 140 RCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN--------------LASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCC--------------eeeHHHHHHHHHHCcC
Confidence 346777777766 5788999999999999999999999999999986422 3579999999999999
Q ss_pred hhHHHHHHHHHHHhc----------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLI----------------------------------DGRPSVSIYNVLINGFVKCREFDKALGFYDR 215 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~----------------------------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 215 (491)
+++|+++|++|.+.+ |..+|..+||+||++|+++|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999997541 2345666778999999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh
Q 011201 216 MVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS 295 (491)
Q Consensus 216 m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 295 (491)
|.. +|..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 964 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
.+|+.++.+|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999965 588899999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011201 376 RRLRKGVEASGLMEKMLK-EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEG 454 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 454 (491)
++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++.| ++.|+..+|++|+.+|+..|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999987 499999999999999999999999999998754 6789999999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcccccC
Q 011201 455 ENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQTR 491 (491)
Q Consensus 455 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~r 491 (491)
.++++++. ++.|+ ..+|..+++.|++.|++++|.+
T Consensus 514 ~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 514 RLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999997 56675 6799999999999999999863
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-54 Score=453.34 Aligned_cols=386 Identities=20% Similarity=0.229 Sum_probs=243.8
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCc----------------------
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGI---------------------- 147 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------- 147 (491)
..|.++|..+.. +|..+|+.+|.+|++.|++++|..+|++|...|..++....
T Consensus 138 ~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 138 VHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred HHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 346777777753 57788999999999999999999999999887765542100
Q ss_pred ---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 011201 148 ---FSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD 224 (491)
Q Consensus 148 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 224 (491)
.....+..+++.++.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 00011234556666666666666666666666642 4556666666666666666666666666666555555
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------------------------CHHHHHHHHHHHHcC
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNP-------------------------------NVVSFNTLIRGFFGE 273 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-------------------------------~~~~~~~li~~~~~~ 273 (491)
..||+.++.+|++.|+++.|.+++..|.+.|+.| |.++|+.+|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 5555555555555555555555555554444444 445555555555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 353 (491)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.||++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666667777777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---------------------------------
Q 011201 354 DELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS--------------------------------- 400 (491)
Q Consensus 354 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------------------------------- 400 (491)
++|.+. |..+||.+|.+|++.|+.++|+++|++|.+ ++.||.
T Consensus 448 ~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 776442 445555555555555555555555555543 244443
Q ss_pred --------------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 401 --------------------------------VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE 448 (491)
Q Consensus 401 --------------------------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 448 (491)
.+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 345555555666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 449 NRRKEGENLVNEML-DEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 449 g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
|++++|.++|++|. +.|+.|+..+|++++.+|+++|++++|.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 66666666666666 4566666666666666666666666664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-53 Score=446.01 Aligned_cols=372 Identities=16% Similarity=0.171 Sum_probs=336.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCCh
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRM 170 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (491)
.+..++..+.. .+..++...++.++..|++.|+++.|+.+|++|.... ..+|+.++.+|++.|++
T Consensus 104 ~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d--------------~~~~n~li~~~~~~g~~ 168 (857)
T PLN03077 104 EGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD--------------LFSWNVLVGGYAKAGYF 168 (857)
T ss_pred HHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC--------------eeEHHHHHHHHHhCCCH
Confidence 35555655544 3445667777888888888888888888887775422 35788899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 171 NDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
++|+++|++|... |..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus 169 ~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 169 DEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 9999999998876 778999999999999988888999999999998889999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011201 251 MREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD 330 (491)
Q Consensus 251 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 330 (491)
|.+ ||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||.
T Consensus 248 m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 248 MPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred CCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 975 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 331 FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDL 410 (491)
Q Consensus 331 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 410 (491)
.+|+.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 9999999999999999999999999864 588999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 411 CDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.|++++|.++++.+.+.|+.|+..+|+.||++|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999995 468899999999999999999885
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.3e-23 Score=222.47 Aligned_cols=359 Identities=11% Similarity=0.036 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
..++..+...+.+.|++++|..+++++.... |.....+..++..+.+.|++++|+.+++.+.+.. +.
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 599 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-----------PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PD 599 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CC
Confidence 3444455555555555555555555544332 2223445556666777777777777777766532 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...|..+..+|.+.|++++|.+.|+.+.+... .+...+..+..++.+.|++++|.++|+++.+.... +..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 566777777777777777777777777765432 24556667777777777777777777777665322 5667777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
.+...|++++|.++++.+.+.+. .+...+..+...+...|++++|.+.++.+.+.+.. ..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHH
Confidence 77777777777777777776653 35666777777888888888888888887776533 3566777888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
|.+.++++.+.... +...++.+...|...|+.++|.++|+++.+.. ..+...+..+...+...|+ .+|..+++.+.+
T Consensus 755 A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 88888888776543 67788888888888888888888888888764 3467778888888888888 778888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
.. +-+...+..+...|.+.|++++|.++++++++.+.. +..++..+..++.+.|++++|.
T Consensus 832 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 832 LA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 53 335667778888999999999999999999987643 8899999999999999999986
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.1e-22 Score=217.16 Aligned_cols=357 Identities=11% Similarity=0.058 Sum_probs=202.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 107 HDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
.+..++..+...+...|++++|...++++.... |.....+..+...+...|++++|.+.|+++.+..
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 529 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-----------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-- 529 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 455567777777777777777777777766532 2223455556666666666666666666666542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
+.+..++..+...+.+.|+.++|..+++++.+.+. .+...+..++..+.+.|++++|.++++++.+.. ..+...|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 34556666666666666666666666666655432 244455556666666666666666666665542 2245566666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
..++.+.|++++|...|+++.+... .+...+..+...+.+.|++++|..+++.+.+.... +...+..++..+...|++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666655432 24455555666666666666666666666554322 344555555556666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
++|.++++.+.+.+.. +...+..+...+...|++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+.++.+
T Consensus 686 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666655554322 4445555555555556666666666555553 233344444555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 427 STKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 427 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 485 (491)
.+.. +.+...+..+...|.+.|++++|.+.|+++.+.. ..+...+..+...+.+.|+
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 4432 2344555555555555555555555555555432 2234444444444444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.1e-23 Score=198.39 Aligned_cols=303 Identities=17% Similarity=0.141 Sum_probs=256.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHh
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD---VVTFNILISGFCR 237 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 237 (491)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.++++.+...+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999863 45677899999999999999999999999987542222 2567888999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS----VTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~ 313 (491)
.|++++|.++|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999987632 36788999999999999999999999999887644322 245567778889999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|+.++|.+.++++.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999876533 45677888999999999999999999999865443356788999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR---ENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
. .|+...+..+...+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.+++++|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 567677788999999999999999999998876 5899999988888775 56999999999999998877766
Q ss_pred H
Q 011201 471 A 471 (491)
Q Consensus 471 ~ 471 (491)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.8e-21 Score=185.69 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=253.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC--CHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP--SVSIY 193 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 193 (491)
...+...|++++|...|+++.... |.+..++..+...+...|++++|+.+++.+.......+ ....+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-----------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-----------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 445667799999999999998764 44467888999999999999999999999887522111 13568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRG 269 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~ 269 (491)
..+...|.+.|++++|.++|+++.+.. ..+..+++.++..+.+.|++++|.+.++++.+.+..++. ..+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 899999999999999999999998753 346788999999999999999999999999987544322 245667788
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
+.+.|++++|.++|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|++.|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999987653 246677888899999999999999999998765443356688899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD---VGRTVDADRLRLLA 426 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~ 426 (491)
.+.++++.+.. |+...+..++..+.+.|++++|.++++++.+. .|+..++..++..++. .|+.+++..+++.+
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 99999998865 45566788999999999999999999999885 6899999988887775 45899999999999
Q ss_pred HHCCCCCCHH
Q 011201 427 STKGLDPDGM 436 (491)
Q Consensus 427 ~~~g~~p~~~ 436 (491)
.+.++.|+..
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 9887777665
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1e-18 Score=176.33 Aligned_cols=332 Identities=11% Similarity=0.029 Sum_probs=273.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
...++..+.+.|++++|..+++...... |....++..++.+....|++++|+..|+++.+.. +.+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~ 111 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPE 111 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChH
Confidence 4456778889999999999999988754 4445778888888889999999999999999863 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
.+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+.
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 889999999999999999999999987532 25678888999999999999999999988776443 33344333 3478
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH---
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI--- 348 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--- 348 (491)
+.|++++|...++.+.+.....+...+..+...+.+.|++++|+..++.+.+.... +...+..+...|...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHH
Confidence 89999999999999887654445555666678889999999999999999987644 56778889999999999986
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 349 -ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 349 -a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
|...|++..+..+. +...+..+...+.+.|++++|+..+++..+.... +...+..+..++.+.|++++|...++.+.
T Consensus 268 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999887654 6788999999999999999999999999985322 45667778889999999999999999998
Q ss_pred HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 428 TKGLDPDG-MTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 428 ~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+.. |+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 346 ~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 346 REK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 763 444 33444567889999999999999999865
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.8e-17 Score=167.78 Aligned_cols=360 Identities=12% Similarity=-0.051 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.+......+.+.|++++|...|++.+... |. ...|..+..+|.+.|++++|++.+++..+.. +.+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~ 194 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK-----------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYS 194 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCH
Confidence 35567788889999999999999987653 22 3568888999999999999999999999863 4567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----------------------------CC-ChhhHHHHHH--------
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRV----------------------------KP-DVVTFNILIS-------- 233 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----------------------------~p-~~~~~~~li~-------- 233 (491)
.+|..+..+|...|++++|+..|......+. .| +...+..+..
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 8899999999999999999876654322110 00 1001110000
Q ss_pred ----------------------HH------HhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 011201 234 ----------------------GF------CRNKKFDLALGLFREMREKG-CNP-NVVSFNTLIRGFFGERKFDEGVNMA 283 (491)
Q Consensus 234 ----------------------~~------~~~~~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 283 (491)
.. ...+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 11257889999999998764 223 4567888888899999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011201 284 YEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP 363 (491)
Q Consensus 284 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 363 (491)
++..+.... ....|..+...+...|++++|...++...+.... +..++..+...+...|++++|...|++..+....
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~- 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD- 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-
Confidence 999876432 4567888888999999999999999999877543 5678888999999999999999999999887643
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------H
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGM------T 437 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~------~ 437 (491)
+...+..+...+.+.|++++|+..|++.++.. .-+...++.+...+...|++++|...++...+..-..+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 56778888889999999999999999998752 2347788889999999999999999999988753221111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++..+..+...|++++|.+++++.+... |+ ...+..+...+.+.|++++|.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHH
Confidence 2222233445699999999999988654 44 457888999999999999985
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=5.2e-19 Score=163.38 Aligned_cols=357 Identities=15% Similarity=0.089 Sum_probs=275.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
-.++|..+...+-..|++++|+.+++.+++.. |.....|-.+..++...|+.+.|...|.+..+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-----------p~fida~inla~al~~~~~~~~a~~~~~~alqln--- 180 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-----------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--- 180 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---
Confidence 45688889999999999999999999998764 5667889999999999999999999999988863
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHH
Q 011201 188 PSVSI-YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN-VVSFNT 265 (491)
Q Consensus 188 ~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ 265 (491)
|+... .+.+...+-..|++++|...|.+..+.... =...|+.|...+-..|+...|++-|++..+. .|+ ...|-.
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiN 257 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYIN 257 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhh
Confidence 65443 334445555678899998888887765321 2457888888888889999999999888875 343 567888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGN 345 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 345 (491)
|...|...+.+++|...|.+....... ..+++..+...|...|+++.|+..+++.++.... -...|+.|..++-..|+
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccc
Confidence 888888888888888888887765322 4566777777888888888888888888776543 24468888888888888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
+.+|...+++....... .....+.|...|...|.+++|..+|....+ +.|. ....+.|...|-++|++++|..-++
T Consensus 336 V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred hHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 88888888888776543 466777788888888888888888888777 4444 4567778888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccc
Q 011201 425 LASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL-ATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 425 ~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~ 490 (491)
+.... +|+ ...|+.+...|-..|+.++|.+.+.+.+. +.|.. ..++.|...|..+|++.+|.
T Consensus 413 ealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 413 EALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 87763 555 46778888888888888888888888773 45554 46677778888888877764
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3.9e-17 Score=165.39 Aligned_cols=357 Identities=11% Similarity=-0.029 Sum_probs=276.0
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+..|..+... .|+...|..+..++.+.|++++|+..++..+... |....++..+..+|...|
T Consensus 143 ~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-----------p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 143 FNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-----------PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----------CCCHHHHHHHHHHHHHcC
Confidence 34588889887763 5677889999999999999999999999988754 555688999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCC----------------------------CCHHHHHHH------------------------
Q 011201 169 RMNDGLLAFEAMRKLIDGR----------------------------PSVSIYNVL------------------------ 196 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~----------------------------~~~~~~~~l------------------------ 196 (491)
++++|+..|..+....+.. .+...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 9999987665543221110 000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHhhCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 011201 197 ------INGF------VKCREFDKALGFYDRMVRDR-VKP-DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVS 262 (491)
Q Consensus 197 ------i~~~------~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 262 (491)
+..+ ...+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+.... +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHH
Confidence 0000 11257889999999988764 223 4567888888999999999999999999876322 4668
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
|..+...+...|++++|+..|+++.+... -+..++..+...+...|++++|...|+...+.... +...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHH
Confidence 88999999999999999999999988753 36788889999999999999999999999887643 56678888999999
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCh
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS------VTFNCLLEDLCDVGRT 416 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~ 416 (491)
.|++++|+..|++..+.... +...|+.+...+...|++++|++.|++..+.....+. ..++..+..+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 99999999999999876433 6788999999999999999999999998875221111 1122222234446999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 417 VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 417 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
++|..++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 525 ~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999988764 234567888999999999999999999998755
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.1e-17 Score=168.71 Aligned_cols=322 Identities=11% Similarity=0.022 Sum_probs=264.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
...++..+.+.|++++|+.+++.+.... +-+...+..++.++...|++++|.+.|+++...... +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3456777889999999999999998853 445667777778888899999999999999886433 5677888899999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+.|++++|.+.++++.+.... +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999999886332 57788899999999999999999999887765433 3333333 34788999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHH
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE----ASGLMEKML 392 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~ 392 (491)
.++.+.+.....+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887754445555566678899999999999999999987644 67888889999999999986 899999998
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 393 KEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 393 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
+. .| +...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|.+.++++.+. .|+..
T Consensus 278 ~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 278 QF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 85 34 56788889999999999999999999998864 335667788899999999999999999999865 46654
Q ss_pred H-HHHHHHHHHhcCCccccc
Q 011201 472 T-YNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 472 ~-~~~ll~~~~~~g~~~~A~ 490 (491)
. +..+..++...|+.++|.
T Consensus 353 ~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHH
Confidence 4 344567899999999885
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=6.4e-17 Score=174.42 Aligned_cols=358 Identities=12% Similarity=0.039 Sum_probs=250.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH-
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN- 194 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 194 (491)
...+...|++++|...|++.++.. |.+..++..+..++.+.|++++|+..|++..+.....+....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-----------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-----------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 456677899999999999988754 44568889999999999999999999999987642222222222
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 195 -----------VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 195 -----------~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
.+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|++.|++..+.... +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 224567788999999999999988643 25667788889999999999999999998875322 23333
Q ss_pred HHH------------------------------------------HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 264 NTL------------------------------------------IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 264 ~~l------------------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
..+ ...+...|++++|++.|++..+.... +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 322 23344678888888888888776533 55666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----------------------
Q 011201 302 VDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK---------------------- 359 (491)
Q Consensus 302 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------- 359 (491)
...|.+.|++++|...++.+.+.... +...+..+...+...|+.++|...++.+...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888888888888888887765432 2222222222333344444444443322110
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 360 -----------------GNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 360 -----------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
....+...+..+...+.+.|+.++|++.|++..+.. .-+...+..+...+...|+.++|.+.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 012244556667777888888899999888888753 22567788888888888999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCccccc
Q 011201 423 RLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGF--IP---DLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 423 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.+.+.. +.+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|+.++|+
T Consensus 660 l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 660 LAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 88777642 23456667777888888999999999998876421 12 2245666677888888888775
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=2.9e-17 Score=151.96 Aligned_cols=362 Identities=14% Similarity=0.091 Sum_probs=300.0
Q ss_pred hhHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 90 HYDFHIFAWASTIDSFRH-DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
..|+.+++.+.+. +| ....|..+..++...|+.+.|...|.+.++.. |....+...+...+-..|
T Consensus 133 ~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqln-----------P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 133 QDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-----------PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-----------cchhhhhcchhHHHHhhc
Confidence 3478888887764 34 45689999999999999999999999887764 444445556677777899
Q ss_pred ChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~ 246 (491)
++++|...+.+..+. .|. ..+|+.|...+-.+|+...|++.|++.... .|+ ...|-.|...|...+.+++|+.
T Consensus 199 rl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 199 RLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred ccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 999999998888765 344 567999999999999999999999998765 344 4578889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 247 LFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
.|.+....... ..+.+..+...|...|.+|.|+..|++.++.... -...|+.|..++-..|++.+|.+.+...+....
T Consensus 274 ~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 274 CYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99988765322 4678889999999999999999999999987543 357899999999999999999999999988754
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNC 405 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ 405 (491)
. -....+.|...|...|.+++|..+|....+-... -...+|.|...|-++|+.++|+.-|++.++ ++|+ ...|+.
T Consensus 352 ~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 N-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred c-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 4 3456788999999999999999999998875432 356788899999999999999999999988 6787 568899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 011201 406 LLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA-TYNSYMDGL 480 (491)
Q Consensus 406 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~ 480 (491)
+...|-..|+.+.|.+.+.+.+.. .|. .+..+.|...|-..|++.+|+.-|++.+ .++||.. .|-.++.++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCL 500 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHH
Confidence 999999999999999999988875 344 5778899999999999999999999998 5677753 444444444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.1e-15 Score=157.81 Aligned_cols=399 Identities=9% Similarity=-0.001 Sum_probs=271.9
Q ss_pred CCCCChHHHHHHHHhhhcCCCCchhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCC
Q 011201 66 NNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSND 145 (491)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (491)
...++|..+...+.. .. ..+-...|+.++...... -..+...+..+...+.+.|++++|..++++.+...
T Consensus 10 ~~~~~~~~~~d~~~i-a~-~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~------ 79 (765)
T PRK10049 10 KSALSNNQIADWLQI-AL-WAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE------ 79 (765)
T ss_pred ccCCCHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 446677777766652 21 222234467777766542 13455578899999999999999999999987653
Q ss_pred CcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 011201 146 GIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV 225 (491)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 225 (491)
|.....+..++.++.+.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +.
T Consensus 80 -----P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~ 150 (765)
T PRK10049 80 -----PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQ 150 (765)
T ss_pred -----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 4445677788899999999999999999998863 44566 888899999999999999999999887433 55
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----cCCCH---HHHHHHHHHHHHc-C
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREKGCNPNV------VSFNTLIRGFF-----GERKF---DEGVNMAYEMIEL-G 290 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~ 290 (491)
..+..+...+.+.++.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. .
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 5666778888888999999988876553 1221 11122222222 22234 6677777777754 2
Q ss_pred CCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-
Q 011201 291 CEFSSV-TCE----ILVDGLCNEGRVLKACELVIDFSRRGVL-PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP- 363 (491)
Q Consensus 291 ~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 363 (491)
..|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.......
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 222221 111 1133445668888888888888776532 322 22335667888888888888888877643221
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 364 --SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI-----------LPD---SVTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 364 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
....+..+..++...|++++|.++++++.+... .|+ ...+..+...+...|++++|+.+++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 134455666677888888888888888876421 123 1234556667778888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 428 TKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 428 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
... +-+...+..+...+...|++++|++.+++.++. .|+ ...+......+.+.|++++|+
T Consensus 387 ~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 387 YNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 753 445777788888888888888888888888854 455 456666667778888888775
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=1e-15 Score=165.10 Aligned_cols=364 Identities=12% Similarity=0.003 Sum_probs=260.3
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcc-cCCchHH--HHHHHHHHHHH
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIF-SCPEMER--IFHFAVNAFVK 166 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~ 166 (491)
..|...|+.+.... +.+..++..+...+.+.|++++|...|++..+........... ..-.... ........+.+
T Consensus 286 ~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 286 GKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34777888776642 2367789999999999999999999999988754321100000 0000000 11223456778
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH----------------
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI---------------- 230 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---------------- 230 (491)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 364 ~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999998863 456777888889999999999999999998765322 2222222
Q ss_pred --------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011201 231 --------------------------LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAY 284 (491)
Q Consensus 231 --------------------------li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (491)
+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 223455679999999999999887543 56778889999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------------------C
Q 011201 285 EMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR---------------------------------------G 325 (491)
Q Consensus 285 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------------------~ 325 (491)
++.+.... +...+..+...+...++.++|...++.+... .
T Consensus 520 ~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 520 RLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 98875432 3333322222333444444444443322110 1
Q ss_pred CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 011201 326 VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFN 404 (491)
Q Consensus 326 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~ 404 (491)
.+.+...+..+...+.+.|+.++|++.|++..+..+. +...+..++..|...|++++|++.++...+. .| +...+.
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~ 675 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQR 675 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 1234456677888999999999999999999987654 7888999999999999999999999988764 33 455667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTKGLD--P---DGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.+..++...|++++|.++++.+...... + +...+..+...+...|++++|++.|++...
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999999998875321 1 234666678889999999999999999864
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.5e-14 Score=149.26 Aligned_cols=367 Identities=11% Similarity=0.038 Sum_probs=271.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|..+++.+.... +.+...+..+...+...|++++|...++++.... |.... +..+..++...|+
T Consensus 66 ~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-----------P~~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 66 QNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-----------PDKAN-LLALAYVYKRAGR 131 (765)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHH-HHHHHHHHHHCCC
Confidence 45788888876642 3456677788899999999999999999998753 44456 8888999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHH-----hc
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV------VTFNILISGFC-----RN 238 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~ 238 (491)
.++|+..++++.+.. +.+...+..+...+...+..++|++.++.... .|+. .....++.... ..
T Consensus 132 ~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 132 HWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 999999999999863 44677777788889899999999999987654 2221 01122222222 22
Q ss_pred CCh---hHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhc
Q 011201 239 KKF---DLALGLFREMREK-GCNPNVV-SF----NTLIRGFFGERKFDEGVNMAYEMIELGCE-FSSVTCEILVDGLCNE 308 (491)
Q Consensus 239 ~~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 308 (491)
+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. ....+...|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 334 7788899988864 2223221 11 11134556779999999999999987632 322 223357789999
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-----------CCC---HHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLP---KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN-----------LPS---VIACTTL 371 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~l 371 (491)
|++++|+.+|+.+.+..... .......+..++.+.|++++|.+.++.+..... .|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999988654321 123466677788999999999999999987632 122 2345667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRR 451 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 451 (491)
...+...|+.++|+++++++.... .-+...+..+...+...|+.++|++.++.+.+.. +-+...+..++..+.+.|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCH
Confidence 778899999999999999998862 3357788888889999999999999999998863 33466777777889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 452 KEGENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 452 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
++|..+++++++. .|+......+-..+
T Consensus 444 ~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 444 RQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999964 56666555554444
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=8.3e-14 Score=141.44 Aligned_cols=378 Identities=11% Similarity=-0.007 Sum_probs=278.3
Q ss_pred hhHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc
Q 011201 90 HYDFHIFAWASTIDSFRHDH--TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA 167 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (491)
..|+..|..+... .|+. ..+ .++..+...|+.++|+..+++..... +.....+..+...+...
T Consensus 51 ~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-----------n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 51 APVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-----------NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-----------CCCHHHHHHHHHHHHHc
Confidence 3588888888764 2332 233 77888888899999999999887211 11223444457788899
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 247 (491)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999864 445677778889999999999999999998776 45555565555555556677679999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH----------------------------------------------
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN---------------------------------------------- 281 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~---------------------------------------------- 281 (491)
++++.+.... +...+..++.++.+.|-...|++
T Consensus 192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999887433 55566666666655554433333
Q ss_pred --HHHHHHHc-CCCCCh-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHH
Q 011201 282 --MAYEMIEL-GCEFSS-V----TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 282 --~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 353 (491)
-++.+... +..|.. . ...-.+-++...|++.++++.++.+...+......+-.++.++|...++.++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 23333221 111221 1 112345577788999999999999998887666678899999999999999999999
Q ss_pred HHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhcC
Q 011201 354 DELWKKG-----NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI-----------LP--DS-VTFNCLLEDLCDVG 414 (491)
Q Consensus 354 ~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p--~~-~~~~~ll~~~~~~g 414 (491)
+++.... ..++......|..+|...+++++|..+++++.+... .| |- ..+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9987643 123444567899999999999999999999988311 12 22 23445566788899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 415 RTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 415 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.+|++.++.+.... +-|......+.+.+...|.+.+|.+.++..... .|+ ..+......++...|++++|.
T Consensus 431 dl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 431 DLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999998764 558899999999999999999999999887744 454 567778888889999999874
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.9e-13 Score=120.57 Aligned_cols=309 Identities=15% Similarity=0.194 Sum_probs=231.8
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
-|.+.+++.++|.++++--..+.|.+++++.... ..+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 3667789999999999999999999999998776 4478999999999764432 2278999999999999999999
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHc--C--CC---C-Chh
Q 011201 230 ILISGFCRNKKFDL----ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDE-GVNMAYEMIEL--G--CE---F-SSV 296 (491)
Q Consensus 230 ~li~~~~~~~~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~--~--~~---~-~~~ 296 (491)
+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... | +. | |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998764 67788899999999999999999999999888754 44444444321 2 22 2 445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRRG----VLPK---DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACT 369 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (491)
.|...+..|.+..+.+.|.++..-+.... +.++ .+-|..+....|+....+.-...|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 66778888989999999998887665331 2222 2345677788888889999999999998777778888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------HHH-----HHHH-------HHHHH
Q 011201 370 TLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVG-RT--------VDA-----DRLR-------LLAST 428 (491)
Q Consensus 370 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~--------~~a-----~~~~-------~~~~~ 428 (491)
.++++..-.|+++-.-+++..++..|..-+...-.-++..+|+.. .. ..+ ..++ .++.+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 899998889999988899988888776555555555555555543 11 111 1111 11222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
.+......+.+.-.+.+.|+.++|.+++..+.+++
T Consensus 518 --~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 518 --QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred --ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 23445667777788889999999999999886654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1.5e-12 Score=132.46 Aligned_cols=359 Identities=12% Similarity=0.029 Sum_probs=260.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
.-+-...+.|+++.|+..|++..+.. |........++..+...|+.++|+..+++... .........
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~-----------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~l 105 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG-----------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGL 105 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC-----------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHH
Confidence 33446678899999999999998764 22222233778888899999999999999883 112334444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
..+...|...|++++|+++|+++.+.... |...+..++..+.+.++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 44467889999999999999999987544 5667778889999999999999999999876 44555565555555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH----------------------------------
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI---------------------------------- 319 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---------------------------------- 319 (491)
++..+|++.++++.+.... +...+..++.++.+.|-...|.++..
T Consensus 183 ~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7776799999999987533 55666666666666665544443332
Q ss_pred --------------HHHhC-CCCCCH-----hhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 320 --------------DFSRR-GVLPKD-----FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 320 --------------~~~~~-~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.+... +..|.. ....-.+-++...|+..++++.|+.+...+......+--.+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 22221 111211 1122345667788999999999999998886645667788899999999
Q ss_pred ChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC--CH-HHHHH
Q 011201 380 KGVEASGLMEKMLKEG-----ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL-----------DP--DG-MTYHI 440 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----------~p--~~-~~~~~ 440 (491)
+.++|+.+|+++.... ..++......|..++...+++++|..+++.+.+.-. .| |- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999987652 122344457788899999999999999999887311 12 21 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++..+...|+..+|.+.++++.... .-|......+...+...|...+|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 5677888999999999999998653 347778888888888888888775
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.5e-14 Score=125.06 Aligned_cols=345 Identities=16% Similarity=0.134 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHH-HHHHHHHHHhcCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDG-LLAFEAMRKLIDGRP 188 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~ 188 (491)
.+=+.+++. ..+|.+.++.-+++.|...+++.+ +.....+-.++..| ...++--| .+.|-.|...+ ..
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS-------~kvq~~L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~--E~ 185 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVS-------EKVQLELFRLVTYY-NSSNVPFAEWEEFVGMRNFG--ED 185 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhh-cCCCCcchhHHHHhhccccc--cc
Confidence 344555544 456889999999999999887644 11111222222222 22332222 23444454432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+..+| +.|.+.+ -+|+... -+..+|.+||.++|+--..+.|.+++++-.....+.+..+||.+|.
T Consensus 186 S~~sW--------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~ 250 (625)
T KOG4422|consen 186 STSSW--------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIG 250 (625)
T ss_pred ccccc--------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhh
Confidence 34444 3344333 2333222 2566778888888888778888888887777766777778887776
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK----ACELVIDFSRRGVLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 344 (491)
+-.-.. ..+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..+|..+++.+
T Consensus 251 ~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 251 ASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 543322 25677778777778888888888888888776654 4567777777788888888888887777776
Q ss_pred CHhH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC---HHHHHHHHH
Q 011201 345 NAGI-ALEVVDELWK----KGNLP----SVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPD---SVTFNCLLE 408 (491)
Q Consensus 345 ~~~~-a~~~~~~m~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~---~~~~~~ll~ 408 (491)
+..+ +..++.++.. +..+| |...|...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 6543 4444444332 22222 3445566666677777777777665544432 12222 233556666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
..|.....+.-...++.|+-.-+-|+..+...++++..-.|+++-..++|..++..|..-+...-..++.-+++..
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 7777777777777787777766667777777777777778888888888888877775555555555555555443
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=2.1e-12 Score=133.98 Aligned_cols=324 Identities=13% Similarity=0.067 Sum_probs=229.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-IDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~ 201 (491)
+...++...++.+.+.. |.+......+.-..++.|+.++|..+|+..... .+...+....+-|+..|.
T Consensus 356 ~~~~~~~~~~~~~y~~~-----------~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-----------PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred CchhHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 55666666666665542 333456666677778888899999988887762 222345555667788887
Q ss_pred hcCC---HHHHHHH----------------------HHHHhhC-CC-CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 202 KCRE---FDKALGF----------------------YDRMVRD-RV-KP--DVVTFNILISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 202 ~~~~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 252 (491)
+.+. ..++..+ .+..... +. .+ +...|..+..++.. ++.++|+..+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 7766 3333222 1111111 11 22 55677777777776 78888999888877
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 253 EKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 253 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
.. .|+......+...+.+.|++++|...|+++... .++...+..+...+.+.|+.++|...++...+.+.. +...
T Consensus 504 ~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l 578 (987)
T PRK09782 504 QR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNAL 578 (987)
T ss_pred Hh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHH
Confidence 65 355544444455556899999999999987654 334445566677888899999999999988876532 2233
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLC 411 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 411 (491)
+..+.......|++++|...+++..+.. |+...|..+...+.+.|+.++|+..+++..+. .| +...+..+..++.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3334444556699999999999988765 46778888889999999999999999998885 34 4566777777889
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011201 412 DVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
..|+.++|...++...+.. +-+...+..+..++...|++++|...+++..+. .|+.
T Consensus 655 ~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999888863 346778888999999999999999999999854 4543
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2.8e-12 Score=124.59 Aligned_cols=362 Identities=12% Similarity=0.048 Sum_probs=275.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
........+.-.|++++|..++.++++.. |.....|..|...|-+.|+.+++...+-.+-... +.|.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~ 207 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-----------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDY 207 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCh
Confidence 33444455555599999999999998865 4445789999999999999999998888777653 5577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFN----TL 266 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~----~l 266 (491)
..|..+.....+.|.+++|.-.|.+.++.... +...+---+..|-+.|+...|.+.|.++.......|..-+. .+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999887533 44444455677889999999999999999874432333333 34
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------
Q 011201 267 IRGFFGERKFDEGVNMAYEMIEL-GCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP----------------- 328 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 328 (491)
+..+...++.+.|.+.++..... +-..+...+++++..|.+..+++.|......+......+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 55677778889999998887762 234466788899999999999999998888776622211
Q ss_pred ----------CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 329 ----------KDFDYFGLVEKLCGEGNAGIALEVVDELWKKG--NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 329 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
+..+ ..++-++...+..+....+.......+ +.-+...|.-+..+|...|++.+|+.+|..+.....
T Consensus 367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1112 123334444455555555555555554 444677889999999999999999999999998755
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCC
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML--------DEGFIP 468 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p 468 (491)
.-+...|-.+..+|...|..++|.+.++.++... +-+...-..|...+.+.|+.++|.+.+..|. ..+..|
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 5578899999999999999999999999998863 2345556677788999999999999999954 334667
Q ss_pred CHHHHHHHHHHHHhcCCccc
Q 011201 469 DLATYNSYMDGLSNARKSVR 488 (491)
Q Consensus 469 ~~~~~~~ll~~~~~~g~~~~ 488 (491)
+..........+.+.|+.++
T Consensus 525 e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777778888888888765
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=6.9e-12 Score=130.26 Aligned_cols=357 Identities=9% Similarity=-0.058 Sum_probs=258.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC------------------
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR------------------ 169 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------ 169 (491)
+......+.-...+.|+.++|..+++........ + . . +.....-++..|.+.+.
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~--~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----A-R--L-SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----c-c--c-CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 4555666666778889999999999988763211 0 0 0 12334456666666555
Q ss_pred -------hhHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 170 -------MNDGLLAFEAMRKLIDG-RP--SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 170 -------~~~a~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
..++....+......+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 22222223333332222 34 67788888888887 8899999988887765 356544444455557899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
++++|...|+++... .|+...+..+...+.+.|+.++|..++++..+.+.. +...+..+.......|++++|...++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998654 345556777788899999999999999999886522 23333334444456699999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
+..+... +...+..+..++.+.|+.++|++.+++..+..+. +...++.+...+...|+.++|++.+++..+... -+
T Consensus 601 ~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~ 676 (987)
T PRK09782 601 RSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DD 676 (987)
T ss_pred HHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 9987754 5778899999999999999999999999998654 677888888899999999999999999998532 25
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
...+..+..++...|++++|...++...+.. |+ ..+.-.......+..+++.|.+-+++.. .+.|+..+....-.
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~--~~~~~~~a~~~~g~ 752 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRW--TFSFDSSIGLRSGA 752 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHh--hcCccchhccccch
Confidence 6788889999999999999999999998863 44 3555556666777778888888887776 34555554444444
Q ss_pred HHHhcCCc
Q 011201 479 GLSNARKS 486 (491)
Q Consensus 479 ~~~~~g~~ 486 (491)
.+...+++
T Consensus 753 ~~~~~~~~ 760 (987)
T PRK09782 753 MSTANNNV 760 (987)
T ss_pred Hhhhcccc
Confidence 44444433
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.3e-12 Score=124.53 Aligned_cols=283 Identities=10% Similarity=-0.006 Sum_probs=216.2
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCChhH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSI-YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN--ILISGFCRNKKFDL 243 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~ 243 (491)
.|++++|.+.+....+.. ++... |-.......+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 699999998888766531 22333 333344557889999999999999875 44543332 33667889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHH
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-------VTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~ 316 (491)
|.+.++++.+.... +......+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988654 6788889999999999999999999999988755322 133333444444455666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
+++.+.+. .+.+......+...+...|+.++|.+++++..+.. ++... .++.+....++.+++++..++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66665433 23466778889999999999999999999988853 34421 23444556699999999999998863
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.-|...+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+.+++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 225667888899999999999999999999886 68999999999999999999999999998764
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=2.5e-12 Score=123.39 Aligned_cols=299 Identities=10% Similarity=-0.003 Sum_probs=214.8
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 157 FHFAVNAF--VKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 157 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+. ...|+++.|.+.+.+..+. .|+ ...+-.....+.+.|+.+.|.+.+.+..+....++....-....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 33444443 3589999999999887765 344 33344456778888999999999999876532222233344577
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHH---HhcC
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE-ILVDGL---CNEG 309 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~---~~~g 309 (491)
.+...|+++.|.+.++++.+.... +...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998654 6778889999999999999999999999998754 333332 111222 2233
Q ss_pred CHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHH
Q 011201 310 RVLKACELVIDFSRRGVL---PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIA-CTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~ 385 (491)
..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 333334455555544321 3677888899999999999999999999998754322211 122222234457788888
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 386 GLMEKMLKEGILPDS---VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 386 ~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+.+++..+. .|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888775 3443 45668888999999999999999964444457898889999999999999999999999864
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.2e-12 Score=123.07 Aligned_cols=283 Identities=12% Similarity=0.058 Sum_probs=218.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHH-HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH--HHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERI-FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN--VLIN 198 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~ 198 (491)
.|+++.|...+........ .+.. +-.......+.|+++.|.+.+.++.+. .|+...+. ....
T Consensus 97 eGd~~~A~k~l~~~~~~~~------------~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~ 161 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE------------QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVR 161 (398)
T ss_pred CCCHHHHHHHHHHHHhccc------------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHH
Confidence 4999999988876544321 1223 333355558899999999999999875 35543322 3367
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 011201 199 GFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV-------VSFNTLIRGFF 271 (491)
Q Consensus 199 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~ 271 (491)
.+...|++++|.+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999887643 6778889999999999999999999999988665322 13334444444
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALE 351 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 351 (491)
...+.+...++++.+-+. .+.+......+...+...|+.++|.+++++..+... +. -..++.+.+..++.+++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~--~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DE--RLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CH--HHHHHHhhccCCChHHHHH
Confidence 455556666666665432 234677888899999999999999999999988533 33 2224455556799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 352 VVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 352 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
..+...+.... |...+.++...+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 316 ~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999887654 777888999999999999999999999998 579999999999999999999999999987654
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=4.9e-12 Score=121.39 Aligned_cols=301 Identities=11% Similarity=0.025 Sum_probs=219.7
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 111 TFLFIVRSLA--SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 111 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
.+..+.+++. ..|+++.|.+.+....+.. |.....+-....+..+.|+.++|.+.+++..+.. |
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-----------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p 149 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA-----------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---G 149 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C
Confidence 3444444444 4499999999998876543 2222344455778888999999999999987753 4
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-H
Q 011201 189 SV--SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFN-T 265 (491)
Q Consensus 189 ~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ 265 (491)
+. ...-.....+...|+++.|.+.++.+.+.... +...+..+...+.+.|++++|.+++..+.+.+.. +...+. .
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l 227 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADL 227 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 43 34444588889999999999999999988633 6678889999999999999999999999998765 333332 1
Q ss_pred HHH---HHHcCCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 011201 266 LIR---GFFGERKFDEGVNMAYEMIELGCE---FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDY-FGLVE 338 (491)
Q Consensus 266 li~---~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~ 338 (491)
-.. +....+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+.........+ .....
T Consensus 228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI 307 (409)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHh
Confidence 112 223333444444555555554321 37788888999999999999999999999987544322111 11222
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSV--IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT 416 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 416 (491)
.....++.+.+.+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 234457888899999888776433 44 667788899999999999999999644444679999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011201 417 VDADRLRLLAST 428 (491)
Q Consensus 417 ~~a~~~~~~~~~ 428 (491)
++|.++|++...
T Consensus 387 ~~A~~~~~~~l~ 398 (409)
T TIGR00540 387 AEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.8e-12 Score=124.58 Aligned_cols=388 Identities=10% Similarity=0.016 Sum_probs=263.6
Q ss_pred CCchhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH
Q 011201 86 PQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV 165 (491)
Q Consensus 86 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (491)
+.-...++..+..+-..++ .++.+.+.|...+.--|++..++.+...+.... ...+...+.|..+.++|-
T Consensus 249 ~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t--------~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT--------ENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHH
Confidence 3334556777777766544 456678888999999999999999999887653 112334567889999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----C
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK----K 240 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~ 240 (491)
..|++++|...|.+..+.. ..+ +..+-.|...|.+.|+++.+...|+...+... -+..+..+|...|+..+ .
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHH
Confidence 9999999999999888753 122 45566788999999999999999999887632 25556666766676664 4
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM----IELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
.+.|..++.+..+.-. .|...|-.+...+....-+.. +.+|... ...+-.+.....|.+.......|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 5677777777666543 267777777766655544433 6655543 344555677888888888888888888888
Q ss_pred HHHHHHhC---CCCCCH------hhHHHHHHHHHcCCC----------------------------------HhHHHHHH
Q 011201 317 LVIDFSRR---GVLPKD------FDYFGLVEKLCGEGN----------------------------------AGIALEVV 353 (491)
Q Consensus 317 ~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~----------------------------------~~~a~~~~ 353 (491)
.|...... ...++. .+-..+...+-..++ ..+|...+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 88777654 112222 111222222233333 44444445
Q ss_pred HHHHHcC-CCCCHHHHHH----------------------------------HHHHHH------------hcCChHHHHH
Q 011201 354 DELWKKG-NLPSVIACTT----------------------------------LIEGLR------------RLRKGVEASG 386 (491)
Q Consensus 354 ~~m~~~~-~~~~~~~~~~----------------------------------li~~~~------------~~g~~~~a~~ 386 (491)
+...... ..|+..++-. |...|. ..+..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 4444322 2232222111 111111 1234556777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE-G 465 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~ 465 (491)
+|.+.++... -|...-+.+.-+++..|++.+|..+|....+... -+..+|-.+.++|...|++..|+++|+...+. +
T Consensus 634 ~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777776532 2566666777778888999999999999888743 35678889999999999999999999987765 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCccccc
Q 011201 466 FIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 466 ~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
-.-+..+.+.|.+++.+.|++.+|.
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 4667889999999999999988774
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.1e-12 Score=109.43 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=224.6
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcC
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV------VTFNILISGFCRNK 239 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~ 239 (491)
-.++.++|++.|-+|.+. .+-+..+--+|.+.|-+.|.+|.|+++.+.+.++ ||. .....|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 357789999999999984 3456777888999999999999999999998875 332 23345667788999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS----VTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~ 315 (491)
-+|.|+++|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999986432 4567788999999999999999999999887654332 23444555555668899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
.++....+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999887654 4444556778889999999999999999998776667788899999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 011201 396 ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR---ENRRKEGENLVNEMLDE 464 (491)
Q Consensus 396 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 464 (491)
. ....-..+...-......+.|..++.+-... +|+...+..+|..-.. .|+..+-+.+++.|+..
T Consensus 280 ~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 T--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred C--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 3333344444445556677777776655554 6999999999987643 46778888888888754
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3.6e-15 Score=135.92 Aligned_cols=255 Identities=17% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
...+.+.|++++|++++++.......+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44444555555555555332221101223333444444444445555555555555443322 33334444433 34445
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-CEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
+++|.+++.+..+.. ++...+..++..+.+.|+++++.++++.+.+.. ...+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555444433321 233334444444444455554444444443221 12233334444444444444444444444
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
...+.... |......++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++..+.. +-|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 44443322 23333344444444444444444443333321 1122233334444444444444444444433321 113
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
..+...+..++...|+.++|.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHHT-----------
T ss_pred ccccccccccccccccccccccc
Confidence 33333334444444444444443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=3.6e-13 Score=120.81 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=68.5
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 117 RSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
..+.+.+.|.+|+..++-.+..-.... ...-..+.+.+.-.|.+.|.++.|+.-|+.+.+. .|+..+--.|
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsin------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl 315 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSIN------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNL 315 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccc------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhh
Confidence 344555667777777766554322211 0112345667777788999999999999998775 4887776566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDV 225 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 225 (491)
+-++..-|+-++..+.|.+|......+|.
T Consensus 316 ~i~~f~i~d~ekmkeaf~kli~ip~~~dd 344 (840)
T KOG2003|consen 316 IICAFAIGDAEKMKEAFQKLIDIPGEIDD 344 (840)
T ss_pred hhhheecCcHHHHHHHHHHHhcCCCCCCc
Confidence 66677779999999999999875444443
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.7e-15 Score=135.13 Aligned_cols=262 Identities=16% Similarity=0.094 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDR-VKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
.+...+.+.|++++|++++++..... ..-|...|..+...+...++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997654443 2335566666777778899999999999999987654 56677777777 799
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHcCCCHhHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG-VLPKDFDYFGLVEKLCGEGNAGIALEV 352 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 352 (491)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876543 456777888899999999999999999987543 345777888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD 432 (491)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 432 (491)
+++..+..+. |....+.++..+...|+.+++.++++...+.. ..|...+..+..++...|+.++|..+++...+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999997654 67888999999999999999999998887763 3455677888999999999999999999998863 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.|......+.+++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4888889999999999999999999887753
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.4e-11 Score=108.74 Aligned_cols=285 Identities=14% Similarity=0.080 Sum_probs=219.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCC
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLIRGFFGER 274 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g 274 (491)
..++....+.+++.+-.+.....|+.-+...-+....+.-...|+++|+.+|+++.+...- -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455566677888888888888887655555555555666778999999999999887321 16677777765443322
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++ .++.+-.-.--+....|+.++.+-|+-.++.++|...|+..++.+.. ....|+.+.+-|....+...|.+.++
T Consensus 314 kL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21 12222111111334578888999999999999999999999988765 55678999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 355 ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP 433 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 433 (491)
...+.++. |...|-.|.++|.-.+...-|+-+|++..+ ++| |...|.+|..+|.+.++.++|++.|......| ..
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 99998655 899999999999999999999999999988 455 67899999999999999999999999999876 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH--HHHHHHHHHhcCCccccc
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLDE----GFIPDLAT--YNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~--~~~ll~~~~~~g~~~~A~ 490 (491)
+...|..|.+.|-+.++.++|...|++.++. |..-+... ..=|..-+.+.+++++|.
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 6788999999999999999999999887752 43333222 222556678888888873
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.5e-11 Score=106.01 Aligned_cols=273 Identities=14% Similarity=0.120 Sum_probs=210.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHH
Q 011201 203 CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN---VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a 279 (491)
+++.++|.+.|-+|.+.... +..+.-+|.+.|.+.|..|.|+++.+.+.++---+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 47899999999999885322 444556788999999999999999999987611111 22345667788999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD----FDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
+++|..+.+.+. .-......|+..|....+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988653 35677889999999999999999999999888765542 3466677777788999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 356 LWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435 (491)
Q Consensus 356 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 435 (491)
..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...++..+.+.. ++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8886533 3333344566788999999999999999998665557788899999999999999999999988864 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
..-..+-..-....-.+.|...+.+-+.. +|+...+..++..-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 44445555444455566677766666644 6999999999886543
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=5e-10 Score=99.72 Aligned_cols=290 Identities=12% Similarity=0.016 Sum_probs=207.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++.+|.+...+-.+.. .-....|-.-..+.-..|+.+.+-.++.+..+..-.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 688888888887766542 223444555556667778888888888887765334455566666777778888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 247 LFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-------VTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
-++++.+.+.. +.........+|.+.|++.+...++..|.+.|.--+. .+|+.++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888777655 5667778888888888888888888888888765544 456666666555555565555666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE-GILP 398 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p 398 (491)
+...+ .+-+...-.+++.-+.++|+.++|.++.++..+.+..+. -...-.+.+-++.+.-++..++-.+. +.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--
Confidence 55432 233445567778888888999999988888888776554 22233456677777777777766654 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011201 399 DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIP 468 (491)
Q Consensus 399 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 468 (491)
+...+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.++.++....-.+|
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 3467778888888889999999998877765 5888899999999999999999998888876443333
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4e-12 Score=119.86 Aligned_cols=285 Identities=13% Similarity=0.052 Sum_probs=213.9
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRV--KPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
-+.++|+..|+++...- .-+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+.- ++
T Consensus 333 y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----AL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HH
Confidence 35678999999866642 23446677788999999999999999999877521 126778888776553322 12
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 246 GLF-REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 246 ~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
..+ +++.+.. +-...+|.++.++|.-+++.+.|++.|++.++.+.. ...+|+.+..-+.....+|+|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 2222221 125789999999999999999999999999876533 6788888888888889999999999887765
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN 404 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 404 (491)
... +-..|..+.-.|.+.++++.|+-.|++..+.++. +.+....+...+-+.|+.++|++++++......+ |...--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 333 2334555677899999999999999999887765 6777777888888999999999999998875433 444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.-...+...++.++|...++++++. ++-+...|..+...|.+.|+.+.|+.-|-.|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4455667789999999999999886 2334566777888999999999999999888854
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=8.8e-11 Score=114.43 Aligned_cols=330 Identities=12% Similarity=0.046 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+...-..+++ |++++|.+++.++.+.. +.+...|.+|...|-..|+.+++...+-..-.... -|...|..+..
T Consensus 140 ~~ll~eAN~lfar-g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 3344444445555 99999999999999863 56788999999999999999999988765544432 26688999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSV----TCEILVDGLCNEG 309 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g 309 (491)
...+.|.++.|.-.|.+.++.... +...+---+..|-+.|+...|.+-|.++.......|.. ....++..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987433 55555566788999999999999999998875433332 2334566677788
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHH--------------------
Q 011201 310 RVLKACELVIDFSRR-GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIAC-------------------- 368 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------------------- 368 (491)
+.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-|
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887763 23345667899999999999999999988887763222222211
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 369 ------TTLIEGLRRLRKGVEASGLMEKMLKEGI--LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHI 440 (491)
Q Consensus 369 ------~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 440 (491)
--+.-++.+.+..+....+...+.+..+ .-+...|.-+..+|...|++.+|..++..+......-+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 1223344455555555666666666653 33567888999999999999999999999988765667789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccc
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDL-ATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~ 490 (491)
+..+|...|.+++|.+.|+..+.. .|+. ..-.+|...+-+.|+.|+|.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHH
Confidence 999999999999999999999854 4544 45566777888999998874
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=4e-10 Score=100.32 Aligned_cols=296 Identities=13% Similarity=0.085 Sum_probs=235.1
Q ss_pred HHHHHHHHhc--CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 113 LFIVRSLASS--YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 113 ~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
..+..++.+. |+|.+|..++.+-.+.+.. ..-.|-....+--+.|+.+.+-..+.+.-+..+ .++.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-----------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l 153 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-----------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTL 153 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-----------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchH
Confidence 3455555554 9999999999886655432 123455567777789999999999999988732 4677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV-------VSF 263 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~ 263 (491)
..+-+........|+.+.|..-++++.+.+.. +........++|.+.|++.....++.+|.+.|.--+. .+|
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 77888889999999999999999999887644 6778899999999999999999999999999876554 367
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 343 (491)
+.++.-....+..+.-...+++.-.. .+-+...-..++.-+.++|+.++|.+++.+..+++..++. ...-.+.+-
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~ 307 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRP 307 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCC
Confidence 77888777777777766677765433 3446677788888999999999999999999999887762 222345566
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
++.+.-.+..++-.+.... ++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..+|.++.
T Consensus 308 ~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 7777777777766554322 568889999999999999999999997777 5899999999999999999999999998
Q ss_pred HHHHHC
Q 011201 424 LLASTK 429 (491)
Q Consensus 424 ~~~~~~ 429 (491)
++....
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 876643
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.1e-11 Score=116.84 Aligned_cols=282 Identities=12% Similarity=0.026 Sum_probs=219.6
Q ss_pred ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHh
Q 011201 124 RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG-RPSVSIYNVLINGFVK 202 (491)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 202 (491)
+..+|...|..+.... +.+..+...+..+|...+++++|.++|+.+.+.... ..+.+.|.+.+-.+-+
T Consensus 334 ~~~~A~~~~~klp~h~-----------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-----------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHhhHHhc-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 4567777777743321 223367788899999999999999999999987433 2468889988866543
Q ss_pred cCCH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011201 203 CREF-DKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN 281 (491)
Q Consensus 203 ~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 281 (491)
.=.. -.|.++.+.+. -.+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|..
T Consensus 403 ~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred hHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHH
Confidence 2111 12333333332 26789999999999999999999999999876332 67889998888999999999999
Q ss_pred HHHHHHHcCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 282 MAYEMIELGCEFSSVTCE---ILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
.|+..+.- |...|+ -+.-.|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.++|++++++...
T Consensus 477 ~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 477 SFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 99987643 455555 4567899999999999999999887765 667778888889999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 359 KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 359 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.+.+ |+..---.+..+...+++++|+..++++++ +.|+ ...|..+.+.|.+.|+.+.|..-|..+.+..
T Consensus 552 ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 552 LDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7665 444444456667778999999999999998 5666 5567778889999999999999888887753
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.6e-10 Score=104.03 Aligned_cols=378 Identities=11% Similarity=0.092 Sum_probs=227.4
Q ss_pred hHHHHHHHhhcC-CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc
Q 011201 91 YDFHIFAWASTI-DSFRHD--HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA 167 (491)
Q Consensus 91 ~a~~~f~~~~~~-~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (491)
.|+.|++.+..+ +.+.-+ ....+.+.-.+.+.|+++.|+..|+...+.. |.....++.++ ++...
T Consensus 255 kaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-----------pn~~a~~nl~i-~~f~i 322 (840)
T KOG2003|consen 255 KAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-----------PNFIAALNLII-CAFAI 322 (840)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-----------ccHHhhhhhhh-hheec
Confidence 478888877654 222222 2345556666788899999999999887654 44444555544 44557
Q ss_pred CChhHHHHHHHHHHHhcCC-----------CCCHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHhhCCCCCChh---
Q 011201 168 NRMNDGLLAFEAMRKLIDG-----------RPSVSIYNVLIN-----GFVKCR--EFDKALGFYDRMVRDRVKPDVV--- 226 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~li~-----~~~~~~--~~~~A~~~~~~m~~~~~~p~~~--- 226 (491)
|+-++..+.|.+|....+. .|+....|.-|. -.-+.+ +.++++-.-.++..--+.|+-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 8888889999998765432 133333333331 111111 1222222222222222223211
Q ss_pred hH----------H--------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------------
Q 011201 227 TF----------N--------ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG------------------- 269 (491)
Q Consensus 227 ~~----------~--------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~------------------- 269 (491)
-| . .-..-+.+.|+++.|+++++-+.+..-+.-...-+.|-..
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 01 0 0122367899999999999887665322111111111110
Q ss_pred -----------------HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 270 -----------------FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 270 -----------------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
....|++++|.+.|++.....-.-....|++ .-.+-..|++++|++.|-.+..- +.-+..+
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 1133677777777777766543322233332 22345667778887777655332 1124556
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 412 (491)
...+.+.|-...+..+|++++.+.... +..|+....-|...|-+.|+-..|.+.+-+--+- +.-+..|...|..-|..
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHh
Confidence 666777777777778888877766554 3346777777888888888877777765443332 34456677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 413 VGRTVDADRLRLLASTKGLDPDGMTYHILVSGY-TRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 413 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
..-+++++.+|++..- +.|+..-|..+|..| .+.|++++|+++|++...+ +.-|...+.-|++.+...|..+
T Consensus 639 tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 7778888888877654 478888888887544 5678999999999888765 5667777777777777766543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-10 Score=102.79 Aligned_cols=312 Identities=11% Similarity=0.033 Sum_probs=232.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhc
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILISGFCRN 238 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 238 (491)
..++......++++.-.+..... |.+-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++..--..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45555666777777776666665 44444444444455666778999999999999887321 2667787776543322
Q ss_pred CChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 239 KKFDL-ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 239 ~~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
..+.- |..++ ++.+ . -..|..++.+-|.-.++.++|..+|++..+.+.. ....|+.+..-|....+...|.+-
T Consensus 313 skLs~LA~~v~-~idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH-Hhcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22221 22221 1121 2 4567778888888899999999999999988654 567889999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 318 VIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGIL 397 (491)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 397 (491)
++...+-+.. |-..|..|.++|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++-|++....|-.
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 9999887655 7778999999999999999999999999886544 8999999999999999999999999999987533
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 398 PDSVTFNCLLEDLCDVGRTVDADRLRLLAST----KGLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
+...+..|.+.|.+.++.++|...++..++ .|..-+ .....-|..-+.+.+++++|.......... .+...
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 678899999999999999999998877654 233222 222333556778899999998887777643 66777
Q ss_pred HHHHHHHHHHhcC
Q 011201 472 TYNSYMDGLSNAR 484 (491)
Q Consensus 472 ~~~~ll~~~~~~g 484 (491)
--..|++.+.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7777877776543
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=2e-09 Score=105.91 Aligned_cols=361 Identities=15% Similarity=0.066 Sum_probs=246.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
+.|..-|..+..+. ++|...+.--.......+++..|..+|..+......+.+| ..-.+..++.+.|+
T Consensus 147 ~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD----------~rIgig~Cf~kl~~ 214 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD----------VRIGIGHCFWKLGM 214 (1018)
T ss_pred HHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC----------ccchhhhHHHhccc
Confidence 45677777776642 2343334334444555689999999999977655433221 12234577889999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR---EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.+.|+..|.+..+.. +-++.++-.|...-.... .+..+..++........ -|+...+.|.+.|.-.|++..++.
T Consensus 215 ~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 215 SEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred hhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHH
Confidence 999999999999873 234444444433333333 35566666666544432 377788889999999999999999
Q ss_pred HHHHHHHcCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 247 LFREMREKGCN--PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 247 ~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+...+...... .-...|..+.++|-..|++++|..+|.+..+..-.--...+.-+...|.+.|+++.+...|+.+.+.
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 99988876321 1244688899999999999999999988876543222334456788999999999999999998877
Q ss_pred CCCCCHhhHHHHHHHHHcCC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCC
Q 011201 325 GVLPKDFDYFGLVEKLCGEG----NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML----KEGI 396 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~ 396 (491)
... +..+...|...|...+ ..+.|..++.+..+..+. |...|-.+...+....- ..++.+|.... ..+-
T Consensus 372 ~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 LPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGK 448 (1018)
T ss_pred Ccc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCC
Confidence 433 4556666666666664 456777777777766433 77778777777765444 34466665443 4455
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK---GLDPDGM-------TYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
.+-....|.+.......|++.+|...|...... ...+|.. -|| +...+-..++.+.|.+.|+.+.+.
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke-- 525 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE-- 525 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--
Confidence 678888999999999999999999998887655 2233331 233 455666778999999999999865
Q ss_pred CCCHH
Q 011201 467 IPDLA 471 (491)
Q Consensus 467 ~p~~~ 471 (491)
.|..+
T Consensus 526 hp~YI 530 (1018)
T KOG2002|consen 526 HPGYI 530 (1018)
T ss_pred CchhH
Confidence 35443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1e-09 Score=100.01 Aligned_cols=329 Identities=12% Similarity=-0.014 Sum_probs=189.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-H
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-V 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 190 (491)
+-....-+.+.|.+++|+..+.+.+... |+-+..|.....+|...|+|++.++.-.+..+. .|+ +
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~ 183 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC-----------PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYV 183 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC-----------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHH
Confidence 3445667888999999999999988753 332456888889999999999988777666654 343 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHH----------------------HHHH---------HhhCC--CCCChhhHHHHHHH---
Q 011201 191 SIYNVLINGFVKCREFDKALG----------------------FYDR---------MVRDR--VKPDVVTFNILISG--- 234 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~----------------------~~~~---------m~~~~--~~p~~~~~~~li~~--- 234 (491)
.++..-..++-..|++++|+. +++. |.+.+ +-|.....++....
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 444444555555555555432 2211 11011 12222211111110
Q ss_pred ------------------------------------------------------------------------HHhcCChh
Q 011201 235 ------------------------------------------------------------------------FCRNKKFD 242 (491)
Q Consensus 235 ------------------------------------------------------------------------~~~~~~~~ 242 (491)
+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 11224444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.|.+-|+..+.....+ ...|--+...|.+..+.++..+.|++..+.+.. +..+|..-...+.-.+++++|..=|+...
T Consensus 344 ~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555544443221 122555555666666666666666666665533 55566666666666666677766666666
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 011201 323 RRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--- 399 (491)
Q Consensus 323 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--- 399 (491)
..... +...|-.+..+..+.+.+++++..|++..++-+. -+..|+.....+...+++++|.+.|+..++. .|+
T Consensus 422 ~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~ 497 (606)
T KOG0547|consen 422 SLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHL 497 (606)
T ss_pred hcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccccc
Confidence 55433 4445555555566666777777777777665332 4566777777777777777777777766653 222
Q ss_pred ----HH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 400 ----SV--TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 400 ----~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
.. +--.++.. .-.+++..|..+++...+... -....|..|...-.+.|+.++|+++|++..
T Consensus 498 ~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 11111111 122667777777776666421 134556777777777777777777777654
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=1.4e-11 Score=119.43 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=155.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 185 DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFN 264 (491)
Q Consensus 185 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 264 (491)
|..|+..+|..+|.-||..|+.+.|- +|.-|.-+....+...++.++.+..+.++.+.+. .|-..||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 66788888888888888888888777 7777777666667777888888877777777665 56777888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHcC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS-RRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~ 343 (491)
.|..+|.+.||+.. ++..++ -...++..+...|-...-..++..+. ..+..||. ...+.-....
T Consensus 88 ~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHH
Confidence 88888888887655 222222 11122223333333333333332221 11222222 2223333344
Q ss_pred CCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRRLR-KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
|-++.+.+++..+...... |..+ +++-+.... .+++...+.+...+ .|+..+|.+++++-...|+.+.|..
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHH
Confidence 5555555555444322111 1111 133222211 22222222222222 4777777777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 485 (491)
++.+|.+.|++.+.+-|..|+-+ .|....+..+++-|.+.|+.|+..|+.-.+..+...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777777777777766666655 66777777777777777777777777777777766444
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=4e-10 Score=112.40 Aligned_cols=233 Identities=11% Similarity=0.015 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH---------cCChhHH
Q 011201 108 DHTTFLFIVRSLASS-----YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK---------ANRMNDG 173 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a 173 (491)
+...|...++..... +++++|...+++..+.. |.....+..+..++.. .+++++|
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-----------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A 323 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-----------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKA 323 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-----------CccHHHHHHHHHHHHHHHHcCCcccchHHHHH
Confidence 344555555553222 34567888888877653 4445566666555442 2346788
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 174 LLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
...+++..+.. +.+..++..+...+...|++++|...|++..+.+.. +...|..+...+...|++++|...+++..+
T Consensus 324 ~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 324 KEHAIKATELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888877753 446677777777777888888888888887766422 455677777777888888888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011201 254 KGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDY 333 (491)
Q Consensus 254 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 333 (491)
.... +...+..++..+...|++++|...++++.+....-+...+..+..++...|+.++|...+..+...... +....
T Consensus 401 l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~ 478 (553)
T PRK12370 401 LDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAV 478 (553)
T ss_pred cCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHH
Confidence 6433 222333344445567777888887777765432223444566666677777777777777765444221 22333
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 334 FGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 334 ~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+.+...|+..| +.|...++.+.+
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHH
Confidence 44445555555 355555555544
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=6.1e-09 Score=98.30 Aligned_cols=367 Identities=8% Similarity=-0.038 Sum_probs=240.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 103 DSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
.++.-+...|..=...|-..|..-.+..++...+..|+... +-..+|..-...|.+.+.++-|..+|....+
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee--------d~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE--------DRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc--------hhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 46677788888888888888888888888888877665422 2245677777778888888888888888777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 011201 183 LIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVS 262 (491)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 262 (491)
.+ +.+...|......--..|..++...+|++....-. -....|-....-+-..||+..|..++.+..+.... +...
T Consensus 545 vf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 545 VF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred hc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 54 44566676666666666777777777777766522 23445555556666777888888887777776444 5667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
|-.-+..-....+++.|..+|.+.... .++..+|.--+..---.+..++|.+++++.++.-.. -...|..+.+.+-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHH
Confidence 777777777777778887777777653 345556655555555567777777777776655221 22345556666666
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
.++++.|.+.|..-.+. +.-.+..|-.+...-.+.|..-.|..++++..-++.+ +...|...|+.=.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 67777776666554433 2224455655555556666666666666666655432 556666666666666666666655
Q ss_pred HHHHHHC----C-------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 423 RLLASTK----G-------------------------LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 423 ~~~~~~~----g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
..+..+. | ...|..+...+...+....+++.|.+.|.+.++.+ .-+..+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 4443322 1 12355666667777778888888888888888654 2244677
Q ss_pred HHHHHHHHhcCCcc
Q 011201 474 NSYMDGLSNARKSV 487 (491)
Q Consensus 474 ~~ll~~~~~~g~~~ 487 (491)
.-+..-+.+.|.-+
T Consensus 855 a~fykfel~hG~ee 868 (913)
T KOG0495|consen 855 AWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHhCCHH
Confidence 77777777777433
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.7e-08 Score=90.57 Aligned_cols=365 Identities=16% Similarity=0.098 Sum_probs=240.8
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|-++|..+.... ..+...|...+..-.+.+.+..|..+++..+..- |-....|..-+.+=-..|+
T Consensus 90 ~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-----------PRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 90 QRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-----------PRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHhcc
Confidence 34778888877643 2344567778888888899999999999887653 3334566666666667899
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
+..|.++|++-... .|+..+|++.|+.-.+.+.++.|..+|++..-. .|++.+|---...=-++|....|..+|+
T Consensus 157 i~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 157 IAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999988765 699999999999999999999999999998764 5888888666665556666666555555
Q ss_pred HHHHc-------------------------------------------------------------CC------------
Q 011201 250 EMREK-------------------------------------------------------------GC------------ 256 (491)
Q Consensus 250 ~m~~~-------------------------------------------------------------g~------------ 256 (491)
...+. |+
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 44221 00
Q ss_pred -------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHH---HhcCCHHHHHHHHHH
Q 011201 257 -------NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS------VTCEILVDGL---CNEGRVLKACELVID 320 (491)
Q Consensus 257 -------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~---~~~g~~~~a~~~~~~ 320 (491)
.-|-.+|--.++.-...|+.+...++|++.+..-.+... .+|--+=-++ ....+.+.+.++++.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 113334444444444556666666666665543211111 1111111111 234556666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHH----HcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 321 FSRRGVLPKDFDYFGLVEKL----CGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
.++. ++-..+|+..+--+| .++.++..|.+++.... |.-|...+|...|..-.+.++++.+..+|++.++-+.
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 5552 222334444333333 34566777777776654 4557778888888888888899999999998888643
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG-LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNS 475 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 475 (491)
. |..+|......=...|+.+.|..+|..+++.. +.--...|...|+-=...|.++.|..+++++++. .+...+|-+
T Consensus 469 e-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWis 545 (677)
T KOG1915|consen 469 E-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWIS 545 (677)
T ss_pred H-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHh
Confidence 3 66777777777778899999999998887752 1222455777777777889999999999998865 334445555
Q ss_pred HHH
Q 011201 476 YMD 478 (491)
Q Consensus 476 ll~ 478 (491)
...
T Consensus 546 FA~ 548 (677)
T KOG1915|consen 546 FAK 548 (677)
T ss_pred HHH
Confidence 443
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=7.2e-09 Score=97.84 Aligned_cols=330 Identities=11% Similarity=0.030 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
...|......--..|..+....++++.+. .||..+..|-....-+-..|++..|..++..+.+.. +.
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~-----------~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pn 616 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVE-----------QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PN 616 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----------hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CC
Confidence 33444444444444555555555555433 344445555555666666677777777777766642 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN-VVSFNTLI 267 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li 267 (491)
+...|-.-+.....+..++.|..+|.+.... .|+...|.--+..-.-.+..++|++++++..+. -|+ .-.|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 5666767777777777777777777665543 455555655555555556777777777666654 223 33455555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
..+-+.++++.|.+.|..=.+. ++-....|-.+...=-+.|.+-+|..+++...-++.. +...|...|++-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHH
Confidence 6666666666666666543322 2223445555555555666777777777776666554 5666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
.|..++.+..+.-. -+...|..-|....+.++-....+.+++ +.-|......+...+....++++|.+.|...+
T Consensus 771 ~a~~lmakALQecp-~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQECP-SSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHhCC-ccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665422 2455666666666555554444443332 34577778888888999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 428 TKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 428 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+.+ +-+..+|.-+...+.++|.-+.-.++++.....
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 875 335788888999999999999999999988754
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=2.1e-10 Score=114.40 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK---------CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
+++|+..|++..+.. +.+...|..+..+|.. .+++++|...+++..+.... +...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 456666666666542 2234445444444332 12355666666655554322 44455555555555666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+++|...|++..+.+.. +...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666665554322 3445555555566666666666666665554322 111222223334445555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+.+....-+...+..+..++...|+.++|...++++...... +....+.+...|+..| ++|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 544322112223444444555555555555555554333111 2233333333444444 244444444433
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=8.4e-13 Score=84.78 Aligned_cols=50 Identities=40% Similarity=0.695 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888875
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=9.5e-13 Score=84.52 Aligned_cols=49 Identities=51% Similarity=1.007 Sum_probs=23.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 223 PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 223 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=4.9e-10 Score=99.26 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4566667777777888888888887776642 344666777777777777888887777777665322 4455666667
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCN-PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|.+.+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 777777777777777776654211 12334555556666666666666666666554322 3344555555555566666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
+|...+++..+.. ..+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666555555441 223333334444444555555555544444
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=4.9e-10 Score=99.24 Aligned_cols=199 Identities=14% Similarity=0.022 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
....+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 355667777777788888888888887765432 24556666777777777777777777777765432 4556666667
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCE-FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|.+.+.+..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 777777777777777776653211 12233444445555555555555555555543322 2233444444455555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
+|.+.+++..... ..+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555444431 123333334444444444444444444443
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=3.8e-09 Score=102.06 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=213.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHH
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVT-FNILISGFC 236 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~ 236 (491)
--....+...|++++|++.++..... +.............+.+.|+.++|..+|..+.+++ |+... |..+..+..
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 33456678999999999999887764 23446667778899999999999999999999985 45544 455555542
Q ss_pred h-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 237 R-----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF-DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 237 ~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
- ..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 2 235788889999987763 3443333333333332233 2455566777788865 567777777776666
Q ss_pred HHHHHHHHHHHHhC----C----------CCCCH--hhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 311 VLKACELVIDFSRR----G----------VLPKD--FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEG 374 (491)
Q Consensus 311 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 374 (491)
.+-..+++...... + -.|+. .++.-+...|-..|++++|++.+++.++..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 66666666665432 1 12333 35566778888999999999999999987543 47788888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------H--HHHHHHHHH
Q 011201 375 LRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGM------T--YHILVSGYT 446 (491)
Q Consensus 375 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~------~--~~~li~~~~ 446 (491)
+-+.|++.+|.+.++...+.+.. |...-+.....+.+.|++++|.+++......+..|-.. + ......+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987544 77777788888899999999999999887766433221 1 234467899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011201 447 RENRRKEGENLVNEMLD 463 (491)
Q Consensus 447 ~~g~~~~A~~~~~~m~~ 463 (491)
+.|++..|++.|....+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999888776654
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=6e-09 Score=95.13 Aligned_cols=323 Identities=14% Similarity=0.069 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV-VTFNILIS 233 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~ 233 (491)
.+....+-|.+.|++++|++.+.+.... .|| ...|.....+|...|+|+++.+.-...++. .|+- ..+.--..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 3555678889999999999999999986 577 788999999999999999998877776654 2321 12222223
Q ss_pred HHHhcCChhHHH----------------------HHHHHH---------HHcC--CCCCHHHHHHHHHHH----------
Q 011201 234 GFCRNKKFDLAL----------------------GLFREM---------REKG--CNPNVVSFNTLIRGF---------- 270 (491)
Q Consensus 234 ~~~~~~~~~~A~----------------------~~~~~m---------~~~g--~~p~~~~~~~li~~~---------- 270 (491)
++-..|++++|+ +++++. .+.+ +-|......+....+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 333334443332 222211 1000 112221111111110
Q ss_pred -----------------------------------------------------------------HcCCCHHHHHHHHHH
Q 011201 271 -----------------------------------------------------------------FGERKFDEGVNMAYE 285 (491)
Q Consensus 271 -----------------------------------------------------------------~~~g~~~~a~~~~~~ 285 (491)
.-.|+...+..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 112334444444444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH
Q 011201 286 MIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV 365 (491)
Q Consensus 286 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 365 (491)
.++....++ ..|--+..+|....+.++..+.|....+.+.. +..+|..-..++.-.+++++|..=|++..+.... +.
T Consensus 352 ~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 352 AIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 444433222 22555566677777777777777777766544 5556777777777777888888888887776533 45
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHH--
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD-----PDGMTY-- 438 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----p~~~~~-- 438 (491)
..|-.+-.+..+.+++++++..|++.+++ +.-....|+.....+...+++++|.+.|+..++..-. .+...+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 55666666666778888888888888776 4445677888888888888888888888887764211 112111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 439 HILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 439 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
..++..-. .+++..|.+++++.++. .|. ...|..|...-.+.|+.++|+
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHH
Confidence 12222222 37888888888888754 333 356788888888888888774
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=6.9e-10 Score=96.04 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=182.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH-HHHHHHHH
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF-NILISGFC 236 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~ 236 (491)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.+|-.|-++|.+-.+.+.|+.+|.+-.+. .|-.+|| ..+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 56789999999999999999988776 478888888999999999999999999987765 3444444 55667778
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
..++.++|.++|+...+.... ++.....+..+|.-.++.+-|+.+|+++.+-|+. +...|+.+.-+|.-.+++|.++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 889999999999998876433 6777777888888899999999999999999976 77888888888888899999998
Q ss_pred HHHHHHhCCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 317 LVIDFSRRGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 317 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
-|+.....-..++ ..+|..+-......||+..|.+.|+-....+.. +...+|.|...-.+.|+.++|..++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8888775433332 335666777778888999998888887776544 567788887777888888888888887765
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=6.7e-10 Score=96.08 Aligned_cols=233 Identities=13% Similarity=-0.026 Sum_probs=181.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHh
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCN 307 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~ 307 (491)
+-+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778888888888888888887765 456778888888888888888888888887654 3444444 445567777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.++.++|.++++...+.... ++.....+...|.-.++.+.|+..++.+...|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888999999888776433 5555666667777888999999999999998877 788888888888888999999998
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 388 MEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 388 ~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
|.+....--.|+ ...|-.+-......|++..|.+.|+...... ..+.+.+|.|...-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-- 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS-- 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--
Confidence 888876533344 3456666666778899999999999888764 33678899998888999999999999998874
Q ss_pred CCCCH
Q 011201 466 FIPDL 470 (491)
Q Consensus 466 ~~p~~ 470 (491)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 34543
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=4.7e-08 Score=94.59 Aligned_cols=298 Identities=16% Similarity=0.045 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
........+...|++++|+..++.....- .+...........+.+.|+.++|..++..+.+.+ +.|.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I-----------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~ 72 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI-----------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNY 72 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC-----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcH
Confidence 34455677889999999999998755432 2334567778999999999999999999999874 3455
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHHcCCCCCHHHHH
Q 011201 191 SIYNVLINGFVKC-----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD-LALGLFREMREKGCNPNVVSFN 264 (491)
Q Consensus 191 ~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~g~~p~~~~~~ 264 (491)
.-|..+..+..-. .+.+...++|+++...- |.......+.-.+.....+. .+...+..+..+|++ .+|+
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~ 147 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFS 147 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHH
Confidence 5566666665222 35788889999887653 44333333322232222333 455666777778864 3566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIEL----G----------CEFSS--VTCEILVDGLCNEGRVLKACELVIDFSRRGVLP 328 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (491)
.+-..|......+-..+++..+... + -.|.. .++..+...|...|++++|+++++..+++...
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt- 226 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT- 226 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-
Confidence 7767777666666666666665432 1 12233 34566678888999999999999999988643
Q ss_pred CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------
Q 011201 329 KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSV------- 401 (491)
Q Consensus 329 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------- 401 (491)
....|..-.+.+-..|++.+|.+.++........ |-..-+-.+..+.+.|+.++|.+++....+.+..|-..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3667888899999999999999999999987654 77777788888999999999999999998876544322
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 402 -TFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 402 -~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
.......+|.+.|++..|++.|..+.+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 124555688899999999886655543
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.2e-08 Score=92.12 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
++...-...+-+...+++.+..++++...+.. ++....+..-|.++.+.|+..+-..+=.+|.+.-.. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44555555666777899999999999988763 446666677777999999999988888888886433 6789999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCCHhhHHHHHHHHHcCCC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR--G-VLPKDFDYFGLVEKLCGEGN 345 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~ 345 (491)
-|.-.|+..+|.++|.+....+.. -...|-.....|+-.|..|+|+..+....+. | ..| +.-+.--|.+.++
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n 395 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNN 395 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhcc
Confidence 888899999999999988755433 2467888889999999999999988776553 2 223 3334556788999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCChHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE--GI---L-PDSVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~-p~~~~~~~ll~~~~~~g~~~~a 419 (491)
.+.|.++|.+.....+. |+..++.+.......+.+.+|..+|+..... .+ . -...+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998887544 7888888877777889999999999887632 11 1 2456788999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNA 483 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 483 (491)
+..++...... +.|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+-..++..+...
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 99999998874 5589999999999999999999999999998 7889998888887766443
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.1e-07 Score=82.02 Aligned_cols=360 Identities=11% Similarity=0.006 Sum_probs=212.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...|-.....-...+++..|.++|+..+..... +...|-.-+.+=.+...+..|..++++.....
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-----------~itLWlkYae~Emknk~vNhARNv~dRAvt~l--- 137 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-----------NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--- 137 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-----------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---
Confidence 3344555556666678899999999998765422 13456667888889999999999999988763
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 188 PSV-SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 188 ~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
|-+ ..|--.+..--..|++..|.++|++..+- .|+...|++.|+.=.+-+.++.|..+|+...-. .|++.+|-..
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wiky 213 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKY 213 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHH
Confidence 443 34555555556679999999999998764 899999999999999999999999999998864 5899999888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------
Q 011201 267 IRGFFGERKFDEGVNMAYEMIEL-GC-EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV------------------ 326 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------ 326 (491)
..-=.+.|....+..+|+...+. |- ..+...+.+....-.++..++.|.-+++..+.+=.
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 88888889988888888877653 10 01112222222222233444444444443322211
Q ss_pred -------------------------CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-HHHHHHH--------
Q 011201 327 -------------------------LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV-IACTTLI-------- 372 (491)
Q Consensus 327 -------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li-------- 372 (491)
..|-.+|.-.++.-...|+.+...++|+.....-..... ..|.-.|
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 112234444555555667777777777776654221110 1111111
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 373 EGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCL----LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE 448 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 448 (491)
-.-....+.+.+.++|+..++. +.-...||..+ ..--.++.++..|.+++...+. .-|...+|...|..=.+.
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 1112345555566666555542 11122232221 1122334455555555544432 234555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 011201 449 NRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQ 489 (491)
Q Consensus 449 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 489 (491)
+.++...+++++.++-+- -|..+|......-...|++|+|
T Consensus 451 ~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred hhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHH
Confidence 555555555555553321 1334455444444455555444
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.8e-07 Score=88.78 Aligned_cols=309 Identities=12% Similarity=0.053 Sum_probs=196.2
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
|+....+..+...+...|+.+++...+.+..+......+. .........+...|++++|.+.+++..+.... |...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 5556777788888888899999888888776653222332 22223344567789999999999998876322 444444
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011201 230 ILISGFCR----NKKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG 304 (491)
Q Consensus 230 ~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 304 (491)
. ...+.. .+..+.+.+.++. .....|+ ......+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 2 222222 4455555555554 1122333 344456667888999999999999999987633 56777888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHh
Q 011201 305 LCNEGRVLKACELVIDFSRRGVL-PK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKGN-LPSVIAC-T--TLIEGLRR 377 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~ 377 (491)
+...|++++|..+++........ ++ ...|..+...+...|++++|..++++...... .+..... + .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 99999999999999988765432 22 23456788899999999999999999865432 1122211 2 23333444
Q ss_pred cCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHH
Q 011201 378 LRKGVEASGL--MEKMLKEGI--LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD---P-----DGMTYHILVSGY 445 (491)
Q Consensus 378 ~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---p-----~~~~~~~li~~~ 445 (491)
.|....+.++ +........ ............++...|+.++|..+++.+...... - .+........++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 5544433333 211111111 111122235566778889999999999887653221 0 122222233456
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011201 446 TRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~ 464 (491)
...|+.++|.+.+.+....
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6899999999999888754
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=9e-09 Score=98.31 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=90.3
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL----ID-GRPSVSI-YNVLINGFVKCREFDKALGFYDRMVRD----- 219 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~----- 219 (491)
|....++..+...|...|+++.|+.+++...+. .| ..|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444566667788888888888888888776553 11 1233322 333556666677777777777766441
Q ss_pred CC-CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHc-
Q 011201 220 RV-KPD-VVTFNILISGFCRNKKFDLALGLFREMREK-----GCN-PNV-VSFNTLIRGFFGERKFDEGVNMAYEMIEL- 289 (491)
Q Consensus 220 ~~-~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 289 (491)
|- .|. ..+++.|...|.+.|++++|...+++..+- |.. |.+ ..++.+...|+..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 11 111 234555566667777766666666554321 111 111 12344455555666666666665544321
Q ss_pred --CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 290 --GCEFS----SVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 290 --~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
-+.++ ..+++.|...|...|++++|.++++.++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 01111 2344455555555555555555554443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1.3e-08 Score=97.22 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----c
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL----I 184 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 184 (491)
..++..+...|...|+++.|..+++...+.-+... + ...+......+.+...|...+++++|+.+|+++... .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~--G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS--G-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc--C-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 35677799999999999999999998876511100 0 234555667777889999999999999999998654 1
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 011201 185 D-GRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRD-----RV-KPDVV-TFNILISGFCRNKKFDLALGLFREMREK- 254 (491)
Q Consensus 185 ~-~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~- 254 (491)
| ..|. ..+++.|..+|.+.|++++|...+++..+- |. .|.+. .++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1222 456888888999999999999888875441 21 12222 3566777888999999999999876543
Q ss_pred ----CCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 255 ----GCN--PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----C---EFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 255 ----g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
|.. --..+++.|...|...|++++|.+++++.++.. - .-....++.+...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 221 123578999999999999999999999886531 1 112345667777777888888787777654
Q ss_pred HhC----CC--CCCHhhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 322 SRR----GV--LPKDFDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 322 ~~~----~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
..- |. +-...+|..|...|...|+++.|.++.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 321 11 11123344444444444444444444443
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-07 Score=88.94 Aligned_cols=286 Identities=13% Similarity=-0.004 Sum_probs=222.8
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNIL 231 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 231 (491)
.+..+.......+-..+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.+|.+.-+ -...+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhH
Confidence 345566677788889999999999999999865 56667777778899999998888888888877633 267799999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 232 ISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
.-.|.-.|+..+|.+.|.+....... -...|-.....|+-.|..|+|+..|...-+.=.. ...-+--+.--|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence 98888899999999999987765222 3568999999999999999999998877654111 112223344467788999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK----G--NLPSVIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~ 385 (491)
+.|.+.|.+....... |..+.+-+.-.....+.+.+|...|+..... + ...-..+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988765433 5666777777777789999999999887631 1 1124567888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 386 GLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 386 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
..+++.+... .-+..++.++.-.|...|+++.|.+.|.+..- +.||-.+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998863 44888999999999999999999999998775 4788777666665443
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.17 E-value=6.3e-09 Score=101.45 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=165.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 103 DSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
.|..|+..||..+|.-|+..|+.+.|- +|..|..... |.....|+.++....+.++.+.+.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL----------pv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL----------PVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc----------cccchhHHHHHhcccccccccCCC--------
Confidence 678899999999999999999999997 8887765432 333567888898888888887763
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----hCCCCCChhhH--------------HHHHHHHHhcCCh
Q 011201 183 LIDGRPSVSIYNVLINGFVKCREFDK---ALGFYDRMV----RDRVKPDVVTF--------------NILISGFCRNKKF 241 (491)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~~~~~~---A~~~~~~m~----~~~~~p~~~~~--------------~~li~~~~~~~~~ 241 (491)
.|...+|..|..+|...||+.. +.+.+..+. ..|+.--...+ ...+....-.|-+
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4888999999999999998654 333222221 12322111111 1122223333444
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 242 DLALGLFREMREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+.+++++..+...... . ++...++-+.... .+++-..+.....+ .++..+|..+++.-.-.|+++.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 5555555444332111 0 1111233333322 23333333333332 57889999999999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
|.+.|+..+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888777777655 78888889999999999999999999888877777554
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.3e-07 Score=81.60 Aligned_cols=294 Identities=15% Similarity=0.022 Sum_probs=206.6
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLA 244 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A 244 (491)
-.++...|...+-.+....-.+.|+.....+.+++...|+.++|...|+.....+ |+ +.....-...+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence 3455555555555444443446788999999999999999999999999876542 22 22222223345677888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 245 LGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 245 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
..+...+....- -+...|-.-........+++.|+.+-++.++.... +...|-.-...+...|+.++|.--|+.....
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 888877765421 14555666666677788999999998888765432 4445544456778889999999999887655
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHCCCCCC-HH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI-EGLRR-LRKGVEASGLMEKMLKEGILPD-SV 401 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~ 401 (491)
.. .+...|..|+.+|...|.+.+|.-+-++..+.- .-+..+.+.+. ..+.. -..-++|.+++++-.. +.|+ ..
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 32 256789999999999999999887766654421 11444444442 22222 2233678888887766 4566 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
..+.+...|...|..+.+..+++..... .||....+.|.+.+...+.+++|++.|...... .|+..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 5667777888899999999999987764 689999999999999999999999999988844 45443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=1.5e-07 Score=86.12 Aligned_cols=218 Identities=10% Similarity=-0.053 Sum_probs=147.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777754322232 456888888899999999999999998876533 6788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
+.|++..+.... +..+|..+..++...|++++|++.|+...+... +..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999876433 567888888889999999999999999887643 32222222223445678899999887655332
Q ss_pred CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc---CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 326 VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK---GNL---PSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 326 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
.++... ..+. ....|+...+ +.++.+.+. .+. .....|..+...+.+.|+.++|+..|++..+.
T Consensus 196 -~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 -DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222221 2222 2334555443 344444321 110 12346777778888888888888888888774
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=1.2e-07 Score=86.69 Aligned_cols=223 Identities=12% Similarity=-0.014 Sum_probs=157.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK 202 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 202 (491)
+..+.++.-+.+++..... ..+.....|......|.+.|+.++|+..|++..+.. +.+..+|+.+...+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccC-------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 4556666777777654311 112234668888889999999999999999998863 4578999999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011201 203 CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM 282 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 282 (491)
.|++++|.+.|++..+.... +..+|..+...+...|++++|++.|++..+.. |+..........+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999999876433 56778888888999999999999999998864 3332222223334567889999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---CCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 283 AYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR---GVL---PKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 283 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
|.+..... .++...+ .+. ....|+...+ +.+..+.+. .+. .....|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97765432 2232222 222 2335555443 344444322 111 12357888999999999999999999999
Q ss_pred HHcCCC
Q 011201 357 WKKGNL 362 (491)
Q Consensus 357 ~~~~~~ 362 (491)
.+.++.
T Consensus 263 l~~~~~ 268 (296)
T PRK11189 263 LANNVY 268 (296)
T ss_pred HHhCCc
Confidence 987643
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=1.1e-06 Score=83.51 Aligned_cols=305 Identities=10% Similarity=-0.067 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.|..+...+...++.+.+...+.......... .+..+........+...|++++|.+.+++..+.. +.+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~ 77 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAAR--------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDL 77 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcH
Confidence 45555666666677777666666654433210 1112334444556778999999999999988753 3444
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 191 SIYNVLINGFV----KCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 191 ~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
..++. ...+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.... +...+..
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~ 153 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHA 153 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 45542 22222 245555666665541 122233 334445667888999999999999999987543 5677888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhH-H--HHHH
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCE-FSS--VTCEILVDGLCNEGRVLKACELVIDFSRRGV-LPKDFDY-F--GLVE 338 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~ 338 (491)
+...+...|++++|..++++..+.... ++. ..|..+...+...|++++|..++++...... ....... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 899999999999999999998865322 222 3455678889999999999999999864432 1112111 1 3333
Q ss_pred HHHcCCCHhHHHHH--HHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--------CHHHHHHH
Q 011201 339 KLCGEGNAGIALEV--VDELWKKGNLPSVIAC--TTLIEGLRRLRKGVEASGLMEKMLKEGILP--------DSVTFNCL 406 (491)
Q Consensus 339 ~~~~~g~~~~a~~~--~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--------~~~~~~~l 406 (491)
-+...|....+.+. +..............+ .....++...|+.++|..+++.+....... ........
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 44444543333332 1111111101011222 245667788999999999999887642220 11111222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 011201 407 LEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.-++...|+.++|.+.+......
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 22456889999999988776653
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.5e-06 Score=80.30 Aligned_cols=349 Identities=13% Similarity=0.092 Sum_probs=200.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
+=+......+++++|.....++...+ |+...++.+-+-++++.+++++|+.+.+.-.... .-+...
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-----------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~- 82 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-----------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFF- 82 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-----------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhh-
Confidence 34566777889999999999988764 4446778888888889999999886554433210 011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----------------
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCN---------------- 257 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~---------------- 257 (491)
---..+..+.+..++|+..++-... -|..+...-...+.+.|++++|+++|+.+.+.+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 1112333456778888877772211 12334445556677788888888888877443211
Q ss_pred -----------CCHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHcC-------CCCCh-------hhHHHHHHHHHhcC
Q 011201 258 -----------PNVVSFNTLI---RGFFGERKFDEGVNMAYEMIELG-------CEFSS-------VTCEILVDGLCNEG 309 (491)
Q Consensus 258 -----------p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~ll~~~~~~g 309 (491)
....+|..+. ..+...|++.+|+++++...+.+ -.-+. .+-..+.-.+...|
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 0111333332 34456788888888887772211 00001 11123444556678
Q ss_pred CHHHHHHHHHHHHhCCCCCCHh----hHH-----------------------------------------------HHHH
Q 011201 310 RVLKACELVIDFSRRGVLPKDF----DYF-----------------------------------------------GLVE 338 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~----~~~-----------------------------------------------~li~ 338 (491)
+.++|..++..+++.... |.. .-| .++.
T Consensus 239 qt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777665432 110 000 0111
Q ss_pred HHHcC--------------------------------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 339 KLCGE--------------------------------GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 339 ~~~~~--------------------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
.|... .....+.+++....+....-...+.-.++......|+++.|++
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 11100 1122333333333333222234455566677778889999888
Q ss_pred HHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCHH
Q 011201 387 LME--------KMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK--GLDPDGM----TYHILVSGYTRENRRK 452 (491)
Q Consensus 387 ~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~----~~~~li~~~~~~g~~~ 452 (491)
++. ...+.+..|- +...+...+.+.++.+.|..++...... .-.+... ++.-+...-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 888 4444444444 4455666677777777777666655432 0011222 2333344445789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
+|..+++++.+. ..+|..+...++.+|++..
T Consensus 476 ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 476 EASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 999999999975 3578889999999998753
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.8e-06 Score=73.75 Aligned_cols=288 Identities=11% Similarity=0.015 Sum_probs=196.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 193 YNVLINGFVK--CREFDKALGFYDRMVRD-RVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 193 ~~~li~~~~~--~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
....+.+++. .++...|...+-.+... -+.-|+.....+.+++...|+.++|+..|++..-.+.. +........-.
T Consensus 197 ls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~L 275 (564)
T KOG1174|consen 197 LSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHH
Confidence 3334444443 34444444444433332 23446777888889999999999999999987765221 22233333445
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
+.+.|+++....+...+.... .-+...|..-.......++++.|+.+.+..++.+.. +...|-.-...+...|+.++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHH
Confidence 567888888888877776542 123333444445555678888998888887766543 344455555677788999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCChHHHHHHHHHHH
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLL-EDL-CDVGRTVDADRLRLLAS 427 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~ 427 (491)
.-.|+......+. +...|..|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..| .....-++|.++++...
T Consensus 354 ~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 9999998775433 7889999999999999999999888776664 333555555442 222 23344678888888766
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 011201 428 TKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQ 489 (491)
Q Consensus 428 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 489 (491)
.. .|+ ....+.+...+...|+.++++.++++... ..||....+.|.+.+.-.....+|
T Consensus 432 ~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 432 KI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred cc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHH
Confidence 54 454 34566777888999999999999999884 578999999998888777666655
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=3.3e-07 Score=76.11 Aligned_cols=200 Identities=12% Similarity=0.010 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+.-.+.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|..+.|.+.|+...+.... +....|.-...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 445567778889999999999999988863 456778888889999999999999999988776433 56677888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGC-NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|..|++++|...|++....-. .--..+|..+.-+..+.|+.+.|.++|++..+.... ...+...+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 8889999999999988877522 123567888888888889999999988888877543 34555667777777888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
|...++.....+. ++..+....|+.--..|+.+.+.+.=..+...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877777665 56666666666666677777666665555443
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=1.1e-05 Score=76.83 Aligned_cols=363 Identities=12% Similarity=0.066 Sum_probs=208.3
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCCh
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRM 170 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (491)
.++++++.-.+ .++..-+-.|..++..+++++|.+.+..++......+ ...+.+-..|..+.+..++.-+.
T Consensus 156 ts~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s----k~gkSn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 156 TSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS----KKGKSNHQLWLELCDLISQNPDK 226 (835)
T ss_pred HHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh----hcccchhhHHHHHHHHHHhCcch
Confidence 35555554433 2334467778899999999999999988876543222 12244456677776766665554
Q ss_pred hHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---------
Q 011201 171 NDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--------- 239 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------- 239 (491)
-..+.+=.-|+...+.-+| -..|++|.+.|.+.|.+++|..+|++.... ..++.-|..+.+.|+...
T Consensus 227 ~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4333332223322122244 356999999999999999999999987664 224444555555554221
Q ss_pred -------------ChhHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--
Q 011201 240 -------------KFDLALGLFREMREKGC-----------NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-- 293 (491)
Q Consensus 240 -------------~~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-- 293 (491)
+++-.+.-|+.+...+. .-++..|..-+.. ..|+..+....|.+..+. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc
Confidence 22333444444433311 1133344433332 346677777777777654 222
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC------
Q 011201 294 ----SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK---DFDYFGLVEKLCGEGNAGIALEVVDELWKKG------ 360 (491)
Q Consensus 294 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------ 360 (491)
-...|..+.+.|-..|+++.|..+|+...+...+.- ..+|.....+-.+..+++.|+++++.....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 124567778888889999999999988877654422 3455666666667778888888877664321
Q ss_pred ----CC-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 361 ----NL-------PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 361 ----~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.. -+...|...++..-..|-++....+|+++++..+. ++.........+....-++++.+++++-+..
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 11 13445666666666667777777888887775433 2221111111223444456666666543332
Q ss_pred CCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 011201 430 GLDPD-GMTYHILVSGYTR---ENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 430 g~~p~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
--.|+ ...|+..+.-+.+ .-+.+.|..+|++.++ |..|.
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 11233 2445554444332 2356677777777766 44444
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=4.3e-07 Score=75.46 Aligned_cols=184 Identities=12% Similarity=-0.025 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|...|+...|.+-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 344444444444444444443221 2333444444444444444444444444433221 23333334444444444444
Q ss_pred HHHHHHHHHhCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 314 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
|.+.|+.....-. .--..+|..+.-+..+.|+.+.|.+.|++..+.... .......+.....+.|++-.|..+++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4444444333211 111122333333333444444444444443333222 12223333333344444444444444443
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 393 KEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 393 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
..+. ++....-..|+.-...|+.+.+-+
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 3322 343333333333334444444433
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=6.5e-06 Score=78.45 Aligned_cols=175 Identities=9% Similarity=0.034 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+.+.|+.+.-.....+++++|...++.....+ +++..++.-+.-.=++.|+++.....-....+.. +
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-----------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~ 140 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-----------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--P 140 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--h
Confidence 34456666555555677777777777666543 4445566665555556666666666666655542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHH------HHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDR-VKPDVVTFNIL------ISGFCRNKKFDLALGLFREMREKGCNPNV 260 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 260 (491)
.....|..+..++.-.|+...|..++++..+.. -.|+...|.-. .....+.|..++|.+.+..-... +. |.
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dk 218 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DK 218 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HH
Confidence 234456666666666777777777777766543 13444433221 12344566666666665544332 11 22
Q ss_pred HH-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011201 261 VS-FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE 299 (491)
Q Consensus 261 ~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 299 (491)
.. -..-...+.+.+++++|..++..++... ||..-|.
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy 256 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYY 256 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHH
Confidence 22 2334455666677777777777776653 3444443
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=7.9e-06 Score=79.43 Aligned_cols=371 Identities=12% Similarity=0.015 Sum_probs=237.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 011201 105 FRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI 184 (491)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (491)
+.-+...|..+.-++.+.|+|..+.+.|++....- -...+.|..+...|...|.-..|+.+++......
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-----------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-----------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 55677888889889999999999999998876432 1124678888899999999999999998876653
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHH
Q 011201 185 DGRPSVSIYNVLINGFVKC-REFDKALGFYDRMVRD--RV--KPDVVTFNILISGFCRN-----------KKFDLALGLF 248 (491)
Q Consensus 185 ~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~-----------~~~~~A~~~~ 248 (491)
..++|...+-..-..|.+. +.+++++++-.+.... +. ......|-.+.-+|... ....++++.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3234455554444555543 6677777766666551 11 12333444444444321 2245778888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 011201 249 REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR-GVL 327 (491)
Q Consensus 249 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~ 327 (491)
++..+.+.. |......+.--|+..++++.|++...+..+.+-..+...|..+.-.+...+++.+|+.+++...+. |..
T Consensus 468 e~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 468 EEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 888776543 333333444557778899999999999998866678888998888888899999999998876533 221
Q ss_pred C------------------CHhhHHHHHHHHHc---------C--------------CCHhHHHHHHHHHH--------H
Q 011201 328 P------------------KDFDYFGLVEKLCG---------E--------------GNAGIALEVVDELW--------K 358 (491)
Q Consensus 328 ~------------------~~~~~~~li~~~~~---------~--------------g~~~~a~~~~~~m~--------~ 358 (491)
. ...|...++...-. . ++..+|.+..+.+. .
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 0 00111112111110 0 01111111111110 0
Q ss_pred cC---------C--CCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 359 KG---------N--LPS------VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 359 ~~---------~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
.| . .|+ ...|......+.+.+..++|..-+.+.... ..-....|......+...|..++|.+
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 00 0 011 223445556666777777777666655543 22344556666566777888899988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN--LVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
.|....... +-++....++..++.+.|+..-|.. ++.++.+.+ .-+...|..+...+.+.|+.++|.
T Consensus 706 af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 706 AFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 888777653 2246777888899999988777777 899998765 347789999999999999998874
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=5.4e-06 Score=73.22 Aligned_cols=160 Identities=9% Similarity=0.123 Sum_probs=90.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (491)
+.-+...+++..|.++++.-...+.... ..+--.+..++...|++++|+.++..+.... .++...+-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE----------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vn 96 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE----------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVN 96 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh----------HHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchh
Confidence 4555667888888888887654432211 1334456788889999999999999887743 456666655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC-----------CChhhH--------------HHHHHHHHhcCChhHHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVK-----------PDVVTF--------------NILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~-----------p~~~~~--------------~~li~~~~~~~~~~~A~~~~~~ 250 (491)
|.-++.-.|.+.+|..+-....+..+. -|..-+ -+|.......-.+++|+++|..
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 665555567777777665443221000 011100 1122222223346677777776
Q ss_pred HHHcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHc
Q 011201 251 MREKGCNPNVVSFNTL-IRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 251 m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.... .|+-...|.. .-+|.+..-++-+.++++-..+.
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 6654 2233333333 33555666667777777666554
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=8.6e-07 Score=76.30 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=106.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI-LISGF 235 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~ 235 (491)
|...+..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-+.++++... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 5567777888888999998888776642 337777888888999999999999999888664 344444432 23455
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLI--RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+.+.+..|+++...|.+. ++...-..-+ ....+.+++..+..++++.-..| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6677788888887777542 1111111111 11223445545544444443222 22222233333344555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
|.+-|+...+-+---....|+.-+ +..+.|+.+.|++...++.++|
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 555555554432222233343322 2334455555555555555544
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1.2e-05 Score=86.53 Aligned_cols=329 Identities=8% Similarity=-0.088 Sum_probs=189.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCCh--hhHHHHH
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRV------KPDV--VTFNILI 232 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------~p~~--~~~~~li 232 (491)
.......|+++.+..+++.+.... ...+..........+...|++++|..++......-- .+.. .....+.
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 344555677777666666553210 011222223444555677888888888877644210 1111 1122233
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRGFFGERKFDEGVNMAYEMIELGCE---F--SSVTCEILVD 303 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll~ 303 (491)
..+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.....-. + ...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4456788999999988887653111121 23455666677889999998888877643111 1 1233445566
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 011201 304 GLCNEGRVLKACELVIDFSRR----GVL--P-KDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPSVIACTTLI 372 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li 372 (491)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 777889999998888776542 211 1 1223445556667779999998888876542 1111233444455
Q ss_pred HHHHhcCChHHHHHHHHHHHHC--CCCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011201 373 EGLRRLRKGVEASGLMEKMLKE--GILPDSV--TF--NCLLEDLCDVGRTVDADRLRLLASTKGLDPD---GMTYHILVS 443 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~ 443 (491)
..+...|+.++|.+.+.+.... ....... .. ...+..+...|+.+.|..++........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6677889999998888877542 1111110 00 1112334457888888887665443211111 111345566
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 444 GYTRENRRKEGENLVNEMLDE----GFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++...|+.++|...+++.... |...+ ..++..+..++.+.|+.++|.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888888887653 32222 235666777788888887764
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=1.8e-05 Score=75.46 Aligned_cols=200 Identities=10% Similarity=0.101 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
..+.....-.+...|+-++|....+...+... .+...|+.+.-.+....++++|++.|....+.. +.
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~-----------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~d 107 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-----------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KD 107 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCc-----------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CC
Confidence 34444444445555566666555555444221 112345555555555556666666666655542 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG-CNPNVVSFNTLI 267 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li 267 (491)
|...|.-|.-.-++.++++.....-..+.+.... ....|..+..++.-.|+...|..++++..+.. -.|+...|....
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSE 186 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 5555555555555555555555555554443211 33445555555555566666666666555442 134444444333
Q ss_pred HHH------HcCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 268 RGF------FGERKFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 268 ~~~------~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
..+ .+.|..++|++.+..-... ..|...+ ..-...+.+.+++++|..++..++.+
T Consensus 187 ~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 187 LLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 322 2344555555444433222 1122222 23344555566666666666666555
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=1.9e-05 Score=84.85 Aligned_cols=307 Identities=10% Similarity=-0.005 Sum_probs=198.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCC-----CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hh
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGR-----PS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV----VT 227 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~ 227 (491)
.....+...|++++|...+.......... +. ......+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34455567899999999998876532111 11 122233345566789999999999987653111121 24
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC--C-Ch
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK----GCN-PNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL----GCE--F-SS 295 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~ 295 (491)
.+.+...+...|++++|...+++.... |-. .-..++..+...+...|++++|...+++..+. +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455666778899999999999887653 111 11234556677788999999999998877642 211 1 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHH--
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRG--VLP--KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-SVIAC-- 368 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~-- 368 (491)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|.+.+++........ ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455566777899999999988775431 111 23344456667888999999999998875421110 11111
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHH
Q 011201 369 ---TTLIEGLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTK----GLDPD-GMT 437 (491)
Q Consensus 369 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~ 437 (491)
...+..+...|+.+.|.+++........... ...+..+..++...|+.++|...++..... |...+ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122445567899999999876554221111 112345666788899999999998877553 32222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
...+..++.+.|+.++|.+.+.+..+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667788899999999999999998753
No 86
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=4e-06 Score=76.73 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
..++..+-..+...++.++|+.+.+++.+.. +-+..+|+....++...| +++++++.++++.+...+ +..+|+...
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~ 113 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHH
Confidence 3455555555667788999999999998863 345667877777777777 679999999998887544 555676555
Q ss_pred HHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--
Q 011201 233 SGFCRNKK--FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE-- 308 (491)
Q Consensus 233 ~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-- 308 (491)
..+.+.|+ .++++++++++.+...+ |..+|+...-++...|+++++++.++++++.++. +...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc
Confidence 55555665 36788889888887655 7888998888888899999999999999988755 566666655554443
Q ss_pred -CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 309 -GRV----LKACELVIDFSRRGVLPKDFDYFGLVEKLCGE----GNAGIALEVVDELWKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 309 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 376 (491)
|.. ++.++....++..... |...|+.+...+... ++..+|.+.+.+....++. +......|+..|+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 222 3455555555554433 455555555555542 2334455555555443322 4445555555554
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=2.4e-07 Score=83.60 Aligned_cols=251 Identities=15% Similarity=0.100 Sum_probs=153.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF 241 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 241 (491)
+-+.-.|++..++.-.+ .... ....+......+.+++...|+.+.++ .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 34445688888876555 2221 11223445566778888888877544 3443333 66666666665555444555
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 242 DLALGLFREMREKGCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+.++.-+++....+... +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56655555544333332 2222233334566789999988887652 2566677788888889999999999988
Q ss_pred HHhCCCCCCHhhHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 321 FSRRGVLPKDFDYFGLVEKLC----GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
|.+.+ +..+...+..++. ..+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87653 2334444444433 344688888888887665 345778888888888888888888888888766432
Q ss_pred CCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 011201 397 LPDSVTFNCLLEDLCDVGRT-VDADRLRLLASTK 429 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 429 (491)
. +..+...++.+....|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2 456666677766777776 5666777776654
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.9e-05 Score=72.65 Aligned_cols=362 Identities=11% Similarity=0.033 Sum_probs=192.9
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+..|..+.... ++|+..|..-..+++..|+|.+|.+--.+.++. +|.....|.-...++.-.|
T Consensus 18 ~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-----------~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-----------NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-----------CCchhhHHHHhHHHHHhcc
Confidence 345777777776653 347788888899999999999998877666554 3667788999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHhhC---CCCCChhhH--------------
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKAL---GFYDRMVRD---RVKPDVVTF-------------- 228 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~---~~~~~m~~~---~~~p~~~~~-------------- 228 (491)
++++|+..|.+-.+.. +.+...++.|..++.......+.. .++..+... ........|
T Consensus 85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999877752 345566666666662110000000 000000000 000000111
Q ss_pred -----------------------------------------------------------------HHHHHHHHhcCChhH
Q 011201 229 -----------------------------------------------------------------NILISGFCRNKKFDL 243 (491)
Q Consensus 229 -----------------------------------------------------------------~~li~~~~~~~~~~~ 243 (491)
..+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 122233333334444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHH
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE-------ILVDGLCNEGRVLKACE 316 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~ll~~~~~~g~~~~a~~ 316 (491)
|++-++...+.. -+..-++....+|...|.+.+.........+.|-. ...-|+ .+..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 444444433332 12222333333444444444444443333333211 011111 11223333344444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
.|...+.....|+.. .+....+++.+..+...-.+...-.. ...-...+.+.|++..|+..|.++++..
T Consensus 320 ~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred HHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 444433322222111 11112222222222221111111001 1111345667889999999999988875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSY 476 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 476 (491)
+-|...|..-.-+|.+.|.+..|..=.+...+.. ++....|..-..++....++++|.+.|++..+. .|+..-+..-
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~ 465 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDG 465 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 3367788888888889999888888766666652 233455655566666677888888888888855 3666555555
Q ss_pred HHHHHh
Q 011201 477 MDGLSN 482 (491)
Q Consensus 477 l~~~~~ 482 (491)
+.-|..
T Consensus 466 ~~rc~~ 471 (539)
T KOG0548|consen 466 YRRCVE 471 (539)
T ss_pred HHHHHH
Confidence 555544
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=5.2e-06 Score=71.59 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
+.+++..+.+..++..|++++....+.. |.+...+..+..+|-...++..|-+.++++... .|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-----------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~ 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-----------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELE 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHH
Confidence 5677788889999999999998776543 334567888899999999999999999999876 36655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 192 IYNVL-INGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG--FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 192 ~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
-|..- ...+.+.+.+.+|+++...|... ++...-..-+.+ ....+|+..+..++++....| +..+.+....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 55432 35666789999999999988653 222222222222 235688888888888877432 5555556666
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHh----
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP-------------KDF---- 331 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~---- 331 (491)
...+.|++++|.+-|+...+-+---....|+..+..| +.|+++.|++...++.++|++- |..
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 6678999999999999887754333567788766554 5689999999999998887541 111
Q ss_pred ----hHHHHHH-------HHHcCCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 332 ----DYFGLVE-------KLCGEGNAGIALEVVDELWKK-GNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 332 ----~~~~li~-------~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
.-+.++. .+.+.|+.+.|.+.+-.|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+.+. .-
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1223333 345678888888888877532 2334666665544322 23445555555555555432 34
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
..||..++-.||+..-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 67888888889998888888887654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.4e-07 Score=85.07 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=163.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011201 200 FVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 279 (491)
+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334588888886555 222221223445566778888889877654 3443332 56666665565555444555555
Q ss_pred HHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 280 VNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 280 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+.-+++....+... +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554443333222 2223333335666789999999888542 3455667788999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 359 KGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD 434 (491)
Q Consensus 359 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 434 (491)
.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.. +-+
T Consensus 160 ~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 64 33344445554432 33688999999998765 66788999999999999999999999999987754 346
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC
Q 011201 435 GMTYHILVSGYTRENRR-KEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 435 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~ 469 (491)
..+...+|.+....|+. +.+.+++.++... .|+
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 77777788887888887 7788899988754 454
No 91
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=6e-06 Score=75.58 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCCC
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN-RMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 189 (491)
++..+-..+...++.++|+.+..+++... |....+|+.-..++.+.| ++++++..++++.+.. +.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-----------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pkn 105 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-----------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKN 105 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--Ccc
Confidence 34455566667789999999999988754 555677777777777777 5899999999998863 456
Q ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREF--DKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
..+|+.....+.+.|+. ++++++++.+.+...+ |..+|+.....+.+.|+++++++.++++++.+.. |..+|+...
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 77788776666667763 6789999999887644 7888998888888999999999999999998776 778888777
Q ss_pred HHHHcC---CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 268 RGFFGE---RKF----DEGVNMAYEMIELGCEFSSVTCEILVDGLCNE----GRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 268 ~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
..+.+. |.. ++.+++..++++.... +...|+.+...+... +...+|.+.+.+..+.++. +......|
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l 261 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDL 261 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHH
Confidence 666554 222 4677777777776543 778888888877773 4456688888777665433 55667777
Q ss_pred HHHHHc
Q 011201 337 VEKLCG 342 (491)
Q Consensus 337 i~~~~~ 342 (491)
++.|+.
T Consensus 262 ~d~~~~ 267 (320)
T PLN02789 262 LDLLCE 267 (320)
T ss_pred HHHHHh
Confidence 777775
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=3.9e-09 Score=60.70 Aligned_cols=32 Identities=50% Similarity=0.937 Sum_probs=16.1
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 220 RVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 220 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=4.5e-09 Score=60.45 Aligned_cols=33 Identities=39% Similarity=0.759 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+|+.||..+|++||++||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367788888888888888888888888888877
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=7e-05 Score=75.07 Aligned_cols=203 Identities=13% Similarity=-0.000 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG 304 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 304 (491)
...|..+..+-.+.|.+.+|++-|-+.. |...|..++....+.|.+++-.+++...++..-.|... +.+|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4456666666666666666665554322 55566666666666666666666666655554444332 456666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 305 LCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
|++.++..+.++++ .-||......+.+-|...|.++.|.-+|.. +.-|.-|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 66666665554443 224555555555666666666666555543 34466666667777777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
.+--++.- +..||..+-.+|...+.+.-|. |....+.....-..-+|.-|-..|-++|.+.+++...
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 65544321 4456666655655544443221 2222223334445556666666666666666666554
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=0.00011 Score=68.94 Aligned_cols=367 Identities=11% Similarity=0.097 Sum_probs=195.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID 185 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (491)
+-|..+|..||+-+... .++++.+.++++... .|.....|..-+..-.+.++++....+|.+....
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-- 82 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-- 82 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--
Confidence 45778899999887666 899999999998763 2555678888899999999999999999998775
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHH----HHHHHHHH-hhCCCCCCh-hhHHHHHHH---------HHhcCChhHHHHHHH
Q 011201 186 GRPSVSIYNVLINGFVKC-REFDK----ALGFYDRM-VRDRVKPDV-VTFNILISG---------FCRNKKFDLALGLFR 249 (491)
Q Consensus 186 ~~~~~~~~~~li~~~~~~-~~~~~----A~~~~~~m-~~~~~~p~~-~~~~~li~~---------~~~~~~~~~A~~~~~ 249 (491)
..+...|..-++.--+. ++... ..+.|+-. .+.|+.+-. ..|+.-+.. +....+++...++|+
T Consensus 83 -vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 83 -VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred -HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 46778787777644332 33222 22333332 233433322 234333332 333445556666666
Q ss_pred HHHHcCCCC------CHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHH--cCCCCCh-------------------
Q 011201 250 EMREKGCNP------NVVSFNTLIRGF-------FGERKFDEGVNMAYEMIE--LGCEFSS------------------- 295 (491)
Q Consensus 250 ~m~~~g~~p------~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~~~~~~~------------------- 295 (491)
++...-+.- |-.+|..=|+.. -+...+..|.++++++.. .|+....
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 664321110 111111111000 011122223333222211 1111000
Q ss_pred ------------------------hhHHHHH---------------------HHHHhcCC-------HHHHHHHHHHHHh
Q 011201 296 ------------------------VTCEILV---------------------DGLCNEGR-------VLKACELVIDFSR 323 (491)
Q Consensus 296 ------------------------~~~~~ll---------------------~~~~~~g~-------~~~a~~~~~~~~~ 323 (491)
.+|...+ +.+...|+ .+++..+++....
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 0111111 01111222 2233333333322
Q ss_pred CCCCCCHhhHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 011201 324 RGVLPKDFDYFGLVEKLCGEG---NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-D 399 (491)
Q Consensus 324 ~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~ 399 (491)
.-..-+..+|..+.+.--..- ..+.....++++......--..+|..++..-.+..-.+.|..+|.+..+.+..+ +
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 211222222332222111111 234444455554443222223456667777777777778888888888776666 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL--ATYNSYM 477 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll 477 (491)
...+++++.-+| .++.+-|.++|+.-.++ +.-+..--...++-+...|+-..|..+|++.+..++.||. .+|..+|
T Consensus 402 VfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 402 VFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 667777777655 46777788887765443 2223344455667777777777788888888777655554 5777777
Q ss_pred HHHHhcCCcccc
Q 011201 478 DGLSNARKSVRQ 489 (491)
Q Consensus 478 ~~~~~~g~~~~A 489 (491)
.-=+.-|+.+.+
T Consensus 480 ~yES~vGdL~si 491 (656)
T KOG1914|consen 480 EYESNVGDLNSI 491 (656)
T ss_pred HHHHhcccHHHH
Confidence 777777776543
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.1e-06 Score=82.61 Aligned_cols=243 Identities=16% Similarity=0.036 Sum_probs=186.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
-+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+..+++..+.... +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 366889999999999999988655 7889999999999999999999999999987644 67788888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHH-----------HHHcCCCHhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCh
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVE-----------KLCGEGNAGIALEVVDELWK-KGNLPSVIACTTLIEGLRRLRKG 381 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~-----------~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~ 381 (491)
|...++..+...++ |..+.. .+.....+....++|-++.. .+..+|......|--.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999888665432 111111 11122223445555555544 45457888888898889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVN 459 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 459 (491)
++|.+-|+..+.. +| |..+||.|...++...+.++|+..|.++++. +|+ +.+.-.|...|...|.+++|.+.|=
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999984 55 5678999999999999999999999999986 565 4555567778999999999999887
Q ss_pred HHHHC---------CCCCCHHHHHHHHHHHHhcCCcc
Q 011201 460 EMLDE---------GFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 460 ~m~~~---------~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
+.+.. +-.++..+|..|=.++.-.++.|
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 66532 11234568888888887777766
No 97
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=6e-06 Score=72.92 Aligned_cols=202 Identities=8% Similarity=-0.018 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG-----LCNEGRVLKACELVIDFSRRGVLPKDF-DYFGL 336 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 336 (491)
-..|+--|.+.+++.+|..+.+++.- ..|-......++.+ ........-|.+.|+..-+.+..-|.. --.++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 34555667788888888877766531 12222222222211 111223455666666655555443322 22334
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCC
Q 011201 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNC-LLEDLCDVGR 415 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~ 415 (491)
...+.-..++++.+-.++.+..--..-|..-| .+.++++..|.+.+|+++|-+.....++ |..+|.. +.++|.+.+.
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 44455556677777777776664333344434 3667777778888888887666544444 5555544 4456677777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 416 TVDADRLRLLASTKGLDPDGMTYHI-LVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
.+.|+.++ .+..-+.+..+.-. +.+-|.+.+.+--|-+.|+++... .|+..-|
T Consensus 444 P~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 444 PQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred chHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 77776554 33322223333333 335666777777777777777643 3444433
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=0.0001 Score=65.11 Aligned_cols=302 Identities=13% Similarity=0.038 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
-..-+...+...|++..|+.-+...+... |.+-.++..-...|...|+-..|+.-+++..+. +||.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-----------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF 105 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-----------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDF 105 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccH
Confidence 34566777888899999999988887653 444455555677888899999998888888875 6775
Q ss_pred HHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------------hhhH--HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 191 SIY-NVLINGFVKCREFDKALGFYDRMVRDRVKPD------------VVTF--NILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 191 ~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------------~~~~--~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
..- -.-...+.+.|.+++|..-|+..++....-+ ...| ...+..+...|+...|+.....+.+-.
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 442 2234667889999999999998887633111 1111 223444667789999999998888765
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-hhH
Q 011201 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK-D-FDY 333 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~ 333 (491)
+- |...|..-..+|...|+...|+.-++...+..-. +..++--+-..+...|+.+.++..+++.++.+..-- . ..|
T Consensus 186 ~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 186 PW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 44 7778888888999999999888877776655432 455555667778888999998888888877643211 1 112
Q ss_pred HHH---------HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 011201 334 FGL---------VEKLCGEGNAGIALEVVDELWKKGNLPSVIACT---TLIEGLRRLRKGVEASGLMEKMLKEGILPD-S 400 (491)
Q Consensus 334 ~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~ 400 (491)
..+ +......+++.++.+-.+...+.........|| .+-.++...|++.+|++...+..+ +.|| .
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHH
Confidence 111 222345567777777777776665443333333 344556677888899998888887 4555 6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.++.--..+|.-...+|.|+.-|+...+..
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 677777777777788888888777776653
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=3.7e-06 Score=81.06 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=78.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
|.+......|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+.. .++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566677777777776665533 23445666677777777777777774421 245566777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
+.|.++-++.. |.......|-+-..-+-++|++.+|.++|-... .|+. .|..|-+.|..+...++.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHH
Confidence 77777665543 233345555555555666677766666653321 1222 234455555555555443
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.76 E-value=6.9e-05 Score=71.61 Aligned_cols=298 Identities=10% Similarity=0.034 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+|-.-+..+.++|++......|+..............|...+......+-++-+..++++.++. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777788888999999999999988776444445677888888888889999999999998864 45557777888
Q ss_pred HHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHcCCCCCh--hhHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREK------GCNPNVVSFNTLIRGFFGERKFDE---GVNMAYEMIELGCEFSS--VTCEILVD 303 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~--~~~~~ll~ 303 (491)
+++.+++++|.+.+...... ..+.+-..|..+-....+.-+.-. ...+++.+... -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999998877543 122355566666665555444322 23334443322 2232 56788889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC----------------C------CHhHHHHHHHHHHHcCC
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE----------------G------NAGIALEVVDELWKKGN 361 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~m~~~~~ 361 (491)
-|.+.|.+++|..++++....-. +...|+.+.++|..- | +++-.+.-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999988776532 333344444444321 1 12333344444443321
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 362 -----------LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD------SVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 362 -----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
..++..|..-+. +..|+..+-...|.+.++. +.|- ...|..+.+.|...|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112333333332 2356777888888888775 3333 3467888889999999999999999
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 425 LASTKGLDPD---GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 425 ~~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
...+-..+-- ..+|..-..+=.++.+++.|+++.++...
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 8877543321 34566666667788899999999888763
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=4e-06 Score=78.89 Aligned_cols=255 Identities=13% Similarity=0.023 Sum_probs=177.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
..-+.+.|++.+|.-.|+...+.. +-+..+|.-|......+++-..|+..+.+..+.... |....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 344667888888888888887752 457888888888888888888888888888776433 56677777778888888
Q ss_pred hhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCCH
Q 011201 241 FDLALGLFREMREKGCN--------PNVVSFNTLIRGFFGERKFDEGVNMAYEMI-ELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
-..|++.+++-+....+ ++...-.. ..+.....+....++|-++. +.+..+|..+...|.-.|.-.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888888887553210 00000000 12223334445555665554 445557888888888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
++|...|+..+..... |...||.|.-.++...+.++|+..|.+..+..+.- +.+..-|.-.|...|.+++|.+.|-..
T Consensus 447 draiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999988877544 67788999999999999999999999988864332 233444566688889999998888655
Q ss_pred HH---C------CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 392 LK---E------GILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 392 ~~---~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
+. . +..++...|..|=.++.-.++.|.+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 43 2 1223456777776677777777755544
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=8.3e-06 Score=78.85 Aligned_cols=233 Identities=9% Similarity=-0.011 Sum_probs=157.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.-..+...+...|-...|..++++. ..+..++.+|...|+..+|..+..+..+. +||.
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~ 457 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDP 457 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcc
Confidence 3445566666677777777777664 45667777888888777777777666552 5777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
..|..+.+.....--+++|.++++....+ .-..+.....+.++++++.+.|+.-.+...- ...+|-.+-.+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHH
Confidence 77777777776666677788777764322 1111222233467888888888765554221 456777777777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIAL 350 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 350 (491)
.+.++++.|.+.|......... +...||.+-.+|.+.|+-.+|...+.+..+-+ .-+...|...+....+.|.+++|+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 8888888888888887765322 56788888888888888888888888888776 335556667777778888888888
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHH
Q 011201 351 EVVDELWKKG-NLPSVIACTTLIEGL 375 (491)
Q Consensus 351 ~~~~~m~~~~-~~~~~~~~~~li~~~ 375 (491)
+.+.++.... ..-|..+...++...
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHH
Confidence 8888776521 111444444444443
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.2e-05 Score=77.86 Aligned_cols=231 Identities=14% Similarity=0.029 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
..+...+.+.|-..+|..+|+++. .|.-+|.+|+..|+..+|..+..+..+ -+||...|..+.+...+.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 445667788899999999998654 578899999999999999999988887 367889999888888777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLM 388 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 388 (491)
.-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+.- -..+|-.+-.+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788999888775443 1112222233478999999999987776432 5788888888889999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 011201 389 EKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG-F 466 (491)
Q Consensus 389 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 466 (491)
..... ..|| ...||.+-.+|.+.|+..+|...+.+..+.. .-+...|...+....+.|.+++|++.+.++.+.. .
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 98877 4565 6789999999999999999999999999987 4567788888888999999999999999987542 1
Q ss_pred CCCHHHHHHHHHHHH
Q 011201 467 IPDLATYNSYMDGLS 481 (491)
Q Consensus 467 ~p~~~~~~~ll~~~~ 481 (491)
.-|......++....
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 125555555544443
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00013 Score=73.17 Aligned_cols=320 Identities=14% Similarity=0.127 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHH-----------HHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHH
Q 011201 108 DHTTFLFIVRSLASSYRFSELH-----------SVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLA 176 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (491)
....|....+.+.+..+.+-=. .++++.++.+.+-. .+++-....+.++...+-..+-+++
T Consensus 935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~--------~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPET--------QDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCcc--------CChHHHHHHHHHHHhcCCcHHHHHH
Confidence 3445667777777766654322 33344444333211 2245566788999999999999999
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 177 FEAMRKLID-GRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
++++.-... ..-+...-|.|+-...+. +...+.+..+++-.-. .|+ +...+...+-+++|+.+|++...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~-- 1076 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM-- 1076 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc--
Confidence 999875311 112333445555444443 3455666666654321 112 23334555667777777776432
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011201 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (491)
+....+.||.- -+.++.|.++-++.. ...+|+.+..+-.+.|.+.+|.+-|-.. -|...|..
T Consensus 1077 ---n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1077 ---NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred ---cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 44444444442 244555554444332 2356666666666666666665544221 13345666
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 415 (491)
+++...+.|.+++..+.+...+++.-.|.+. +.||-+|++.++..+.++++ .-||......+.+-|...|.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhh
Confidence 6666667777776666666655554443332 45666666666665554443 23555555666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 416 TVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
++.|.-++. ++.-|..|...+...|.++.|....++.- +..||..+-.+|...+.+.
T Consensus 1210 y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1210 YEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhh
Confidence 666655543 33445555555555666666555544441 4455555555555554443
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=1.2e-05 Score=82.85 Aligned_cols=229 Identities=11% Similarity=-0.001 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKPD---VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
...|-..|......++.++|.+++++.+.. ++.-. .-.|.++++.-..-|.-+...++|+++.+.. . .-..|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHHH
Confidence 344555555555555555555555554432 11111 1234444444444445555555555555431 0 1233445
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCC
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP-KDFDYFGLVEKLCGEG 344 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 344 (491)
|...|.+.+..++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++.+.++.=.+- ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555555555555555555555431 1234455555555555555555555555554432110 1223344444455566
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
+.+.+..+|+.....-++ -...|+..|+.-.++|+.+.+..+|++.+..++.|- ...|...+..=-+.|+-..++.+
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 666666666666554333 345566666666666666666666666666655543 23455555443444554444443
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00013 Score=69.13 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=126.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.=++.+...|++++|+....++.... +.+..++..-+-++++.+++++|+.+.+.-.. ...+..-+--=..+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHc
Confidence 44677888999999999999999853 56777888888899999999999976654221 011111111123345578
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC------------------------
Q 011201 239 KKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF------------------------ 293 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------------------ 293 (491)
+..|+|+..++ |..++ ..+...-...+.+.|++++|+++|+.+.+++..-
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 99999999998 33333 3366666778899999999999999996654321
Q ss_pred ---ChhhHHHHH---HHHHhcCCHHHHHHHHHHHHhCC-------CCCCHh-------hHHHHHHHHHcCCCHhHHHHHH
Q 011201 294 ---SSVTCEILV---DGLCNEGRVLKACELVIDFSRRG-------VLPKDF-------DYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 294 ---~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~li~~~~~~g~~~~a~~~~ 353 (491)
...+|..+. ..+...|++.+|+++++...+.+ -.-+.. +-..+...+-..|+.++|.+++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 112333333 23445678888888877763221 111111 1223445555678888888888
Q ss_pred HHHHHcCC
Q 011201 354 DELWKKGN 361 (491)
Q Consensus 354 ~~m~~~~~ 361 (491)
..+.....
T Consensus 248 ~~~i~~~~ 255 (652)
T KOG2376|consen 248 VDIIKRNP 255 (652)
T ss_pred HHHHHhcC
Confidence 77776543
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=0.0002 Score=63.42 Aligned_cols=302 Identities=13% Similarity=0.059 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN-ILI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li 232 (491)
+.-.--+.+.+...|++.+|+.-|....+. .+.+-.++-.-...|...|+-..|+.-+.+.++. +||-..-. .-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344456678888999999999999998873 2233344444456788889988898888888775 56643221 223
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC--CHHH----------H--HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNP--NVVS----------F--NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTC 298 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~----------~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 298 (491)
..+.+.|.+++|..-|+...+....- .... | ...+..+.-.|+...|++....+.+.. ..|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45779999999999999998763311 1111 1 223455667899999999999999874 4588889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHH----HHHHH---
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVI----ACTTL--- 371 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~l--- 371 (491)
..-..+|...|++..|+.=+....+..-. +...+..+-..+...|+.+.++...++..+.+ ||.. .|..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHH
Confidence 99999999999999998887777665443 44456667777888999999999999888754 3322 12211
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 372 ------IEGLRRLRKGVEASGLMEKMLKEGILPDSVT---FNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 372 ------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
+......+++.++++-.+...+......... +..+-.++...|++.+|++.-.++.+.. +.|+.++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 1234566778888888888777533322333 3445556677789999999888888752 23478887778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 011201 443 SGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+|.-...+++|+.=|+...+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 8888888888888888887754
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.67 E-value=1.5e-05 Score=81.30 Aligned_cols=225 Identities=9% Similarity=0.047 Sum_probs=118.3
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 104 SFRH-DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 104 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
++.| +...+..|+..+...+++++|..+++...+.. |.....|..+...+.+.++.+++..+ .+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-----------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-----------KKSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----------CcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 3444 45678899999999999999999999776643 33344555555577777777766555 3322
Q ss_pred hcCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 011201 183 LIDGR-----------------PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 183 ~~~~~-----------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
..... -+-.++..+..+|-+.|+.++|..+++++.+.... |+...|.+...|+.. ++++|.
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHH
Confidence 21100 01133344444444445555555555554444322 444444444444444 445554
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR- 324 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 324 (491)
+++.+.... +...+++.++.++|.++..... .+++.-.++.+.+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhh
Confidence 444444332 2233333444444444433221 1222222333333322
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 376 (491)
|..--..++-.+-..|-+.++++++.++++.+.+.... |.....-++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222334555566677777788888888887776544 5555666666665
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=0.00054 Score=67.16 Aligned_cols=342 Identities=16% Similarity=0.085 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV-KANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~ 186 (491)
....|..+...+...|.-..|+.+++........ |.....+-..-..|. +.+.+++++++-.++....+.
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~---------ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~ 426 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ---------PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG 426 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC---------CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh
Confidence 4456788888888889888999999876654322 211233333334444 467788887777776653222
Q ss_pred ---CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 187 ---RPSVSIYNVLINGFVKC-----------REFDKALGFYDRMVRDRV-KPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 187 ---~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
......|..+.-+|... ....++++.+++..+.+. .|++..| +.--|+..++++.|.+...+.
T Consensus 427 ~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 427 QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREA 504 (799)
T ss_pred hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHH
Confidence 12345566666665432 124667788888877643 3433333 444577788999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCC------------------ChhhHHHHHHHHHh-----
Q 011201 252 REKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL-GCEF------------------SSVTCEILVDGLCN----- 307 (491)
Q Consensus 252 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~------------------~~~~~~~ll~~~~~----- 307 (491)
.+.+-.-+...|..+.-.+.-.+++.+|+.+.+...+. |... -..|+..++..+-.
T Consensus 505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 98866668999999999999999999999998876543 2200 01222222222210
Q ss_pred -cCC-----------------HHHHHHHHHHH--------HhCC---------C--CCC------HhhHHHHHHHHHcCC
Q 011201 308 -EGR-----------------VLKACELVIDF--------SRRG---------V--LPK------DFDYFGLVEKLCGEG 344 (491)
Q Consensus 308 -~g~-----------------~~~a~~~~~~~--------~~~~---------~--~~~------~~~~~~li~~~~~~g 344 (491)
.++ ..++.+....+ ...| . .++ ...|......+.+.+
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 000 00111100000 0001 0 011 113445566677788
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHH--
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADR-- 421 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~-- 421 (491)
..++|...+.+...... .....|......+...|..++|.+.|..... +.|+ .....++..++.+.|+..-|..
T Consensus 665 ~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 665 NDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred CchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 88888877777766532 2556666666777888999999999988877 4555 5678888899999998888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|....+.
T Consensus 742 ~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 742 LLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 899998876 457899999999999999999999999988754
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=9.1e-06 Score=72.05 Aligned_cols=187 Identities=12% Similarity=0.045 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV--VTFNI 230 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ 230 (491)
...+......+.+.|++++|+..|+++.+.....+. ..++..+..++.+.|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 466778888899999999999999999876421121 246788889999999999999999999876432111 13445
Q ss_pred HHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 231 LISGFCRN--------KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 231 li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
+..++.+. |+.++|.+.|+++.+.... +...+..+..... ... ... .....+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHHHH
Confidence 55555544 7788999999998876332 2223322211110 000 000 1112455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 303 DGLCNEGRVLKACELVIDFSRRGV--LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
..+.+.|++++|...++...+... ......+..+..++.+.|+.++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667888999999998888876632 123457788888899999999999988887665
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=0.00017 Score=70.89 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=97.7
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI 197 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 197 (491)
.....|.+++|..++++..+ |..+=..|-..|.+++|+++-+.-.+. .=..+|..-.
T Consensus 809 LAieLgMlEeA~~lYr~ckR-------------------~DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA 865 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-------------------YDLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYA 865 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------------------HHHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHH
Confidence 34456888888888877643 555666677788888887775543221 1123344444
Q ss_pred HHHHhcCCHHHHHHHHHHH----------hhCC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 198 NGFVKCREFDKALGFYDRM----------VRDR---------VKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~m----------~~~~---------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
..+-..++.+.|++.|++- .... -..|...|......+-..|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 4445556666666665532 1110 012445555556656667888888888876554
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
|-.+++..|-.|+.++|-++-++- | |....-.+.+.|-+.|++.+|..+|...
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666666666666666554442 2 4455555666666666666666666543
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=3.7e-05 Score=78.56 Aligned_cols=171 Identities=13% Similarity=0.041 Sum_probs=106.0
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|....++..++..+...+++++|.++.+...+.... ....|-.+...+...++.+++.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 556788999999999999999999999987776422 233333344466677776555554 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
++.......++.-+..+...|.+.+- +...+..+..+|-+.|+.+++..+|+++.+.. .-|..+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22223333334333333444444322 44466677777777777777777777777766 33666777777777777 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
.++|++++...... +...+++..+.++|.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 77777776655443 33344555555555555543
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=4.8e-05 Score=78.76 Aligned_cols=230 Identities=9% Similarity=-0.060 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhH
Q 011201 224 DVVTFNILISGFCRNKKFDLALGLFREMREKGCNP-----NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTC 298 (491)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 298 (491)
....|-.-|......++.++|.+++++.... +.+ -...|.++++.-..-|.-+...++|+++.+.- . .-.+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHH
Confidence 3456777777788888888888888887654 211 12356666666666677778888888887653 1 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRR 377 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 377 (491)
..|...|.+.+.+++|.++++.|.++-- -...+|...+..+.+.++-+.|..++.+..+.-.+ -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 7888888888888888888888887633 35567888888888888888888888887664222 123344445555567
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 011201 378 LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG--MTYHILVSGYTRENRRKEGE 455 (491)
Q Consensus 378 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~ 455 (491)
.|+.+.+..+|+.....- .--...|+..++.-.++|+.+.++.+|+++...++.+.. ..|...+..=-+.|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888887752 225667888888888888888888888888888776643 34555555445556655444
Q ss_pred HHH
Q 011201 456 NLV 458 (491)
Q Consensus 456 ~~~ 458 (491)
.+=
T Consensus 1692 ~VK 1694 (1710)
T KOG1070|consen 1692 YVK 1694 (1710)
T ss_pred HHH
Confidence 443
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=2.5e-05 Score=76.52 Aligned_cols=241 Identities=12% Similarity=0.123 Sum_probs=160.6
Q ss_pred HHHHHHHHH--HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 109 HTTFLFIVR--SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 109 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
..|-..+++ .|...|+.+.|..-++.+... .+|..+.+.|++..+++-|.-.+..|....|.
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~----------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD----------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHhhh----------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 334444443 355668888888887776543 57889999999999888887776666543221
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 187 --------RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 187 --------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
.++ ..=....-.....|.+++|+.+|++-++ |..|=..|-..|.|++|+++-+.=.+-.
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--- 856 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH--- 856 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---
Confidence 122 1112223334567999999999998765 4455567778899999999876432221
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH----------HcC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMI----------ELG---------CEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
=..||.....-+-..++.+.|+++|++.. ... -..|...|......+-..|+.+.|+.++.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 23567777777777888888888887532 111 11233444545555555677777777776
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.... |..+++..|-.|+.++|-++-++ .| |......+.+.|...|++.+|..+|.+...
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5433 66777888888888888877664 33 566666788889999999999999877643
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=2.5e-05 Score=69.22 Aligned_cols=191 Identities=10% Similarity=0.026 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID 185 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (491)
......+..+...+.+.|++++|...++++...... .+....++..+..++.+.|++++|+..++++.+...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 345667788888999999999999999998775421 122345777889999999999999999999988643
Q ss_pred CCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 186 GRPSV-SIYNVLINGFVKC--------REFDKALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 186 ~~~~~-~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
..+.. .++..+..++.+. |+.++|.+.|+.+.... |+. ..+..+.... . .. ...
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~------~~~---- 165 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LR------NRL---- 165 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HH------HHH----
Confidence 22322 2455566666654 78899999999988763 332 2222221110 0 00 000
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC--EFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
......+...+.+.|++++|+..++...+... ......+..+..++.+.|++++|..+++.+...
T Consensus 166 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122455678888999999988888876632 123567778888888899999998888877654
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=6.2e-05 Score=64.22 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
|+...|+. +-+.-.|.+..++..-....... -+...-..+-++|.-.|.+..... ++.. |-.|.......+.
T Consensus 8 ~~d~LF~i--Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFNI--RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLA 79 (299)
T ss_pred cchhHHHH--HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHH
Confidence 44444553 33333477877777665543331 244444456677777777655433 2222 2244455555555
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 268 RGFFGERKFDEGVN-MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 268 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
......++.++-+. +.+.+......-+......-...|+..|++++|++...... +......=+..+.+..++
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 55555555554443 44444444333333444444567888999999988876521 222334445666778889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
+-|.+.+++|.+.. +..+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 99999999998864 67777777777764 34677899999998775 678889999998888999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 011201 423 RLLASTKGLDPDGMTYHILVSGYTRENRR-KEGENLVNEMLDE 464 (491)
Q Consensus 423 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 464 (491)
++...++.. .+..+...+|.+-...|.. +-..+.+.+++..
T Consensus 230 L~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 230 LEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 998887643 3566666666555555555 4455566777644
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=2.9e-05 Score=66.22 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=97.0
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhcCC--hh
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF-CRNKK--FD 242 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~--~~ 242 (491)
..++.++++..++...+.. +.|...|..|...|...|++++|...|++..+.... +...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 3566677877888777753 568888999999999999999999999988876533 667777777764 66676 48
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+|.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+..
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999887655 77888888889999999999999999988765
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=4e-05 Score=65.35 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=77.1
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDL-CDVGR--TVDA 419 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~a 419 (491)
.++.+++...++...+.+.. +...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666665433 6667777777777777777777777777764321 455555555543 45555 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+++++..+.. +-+...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777654 235666677777777777777777777777654
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.7e-05 Score=67.61 Aligned_cols=165 Identities=14% Similarity=0.091 Sum_probs=110.0
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.+..+ ..+-..+...|+-+....+....... ...|....+..+....+.|++.+|...|++..... .+|...|+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 333444 55566666677777776666665442 23455666667777777788888887777775543 447777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 777777777777777777777765333 4556667777777777777777777777665433 55566666666777777
Q ss_pred HHHHHHHHHHH
Q 011201 311 VLKACELVIDF 321 (491)
Q Consensus 311 ~~~a~~~~~~~ 321 (491)
+++|..+...-
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 77777766443
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=7.2e-05 Score=72.49 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=112.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
.+.+.....+|.+|+.+++.+.++.. -..-|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34455667788888888888877632 2334667778889999999998888763 234567888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 390 (491)
++.|.++-++. .|.......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 99998886654 34455566677777777788888888877654422 22 346677788888877777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 391 MLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 391 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
-.-.. -..|-..+..-|...|++..|..-|
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 43221 1234444555566667776666544
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=2.9e-05 Score=66.23 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=129.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHH
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSI 192 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (491)
..+-..+...|+-+....+....... .+......+..+....+.|++.+|+..|.+.... .++|...
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-----------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~ 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-----------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEA 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-----------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhh
Confidence 44556666667766666666554322 2344567777899999999999999999999885 3789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
||.+.-+|.+.|++++|..-|.+..+.... +...+|.|...+.-.|+.+.|..++......+.. |...-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh
Confidence 999999999999999999999998876333 5667788888888999999999999998887554 77788889999999
Q ss_pred CCCHHHHHHHHHHHH
Q 011201 273 ERKFDEGVNMAYEMI 287 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~ 287 (491)
.|++++|.++...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 999999998876644
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=0.00023 Score=71.58 Aligned_cols=163 Identities=9% Similarity=0.063 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.|..+...|+...+..+|...|++..+.. +........+...|++..+++.|..+.-..-+......-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-----------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-----------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 67777777777777777777777776543 3334566677777888888888777633222211000112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT--LIR 268 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--li~ 268 (491)
..|....-.|.+.++...|..-|+...+..+. |...|..+..+|.++|++..|+++|.+.... .|+ .+|.. ...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~ 638 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAV 638 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHH
Confidence 22334445566677777777777777665443 6778888888888888888888888887765 222 22222 222
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 011201 269 GFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~ 288 (491)
.-+..|.+.+++..+.....
T Consensus 639 ~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34567788888777776543
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.0003 Score=66.02 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCC
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKK 240 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 240 (491)
++.+..|+++.|+..|.+..... ++|-..|..-..+|+..|++++|++=-.+-++. .|+ ...|+-...++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 44567788888888888877753 457777888888888888888887766555443 343 3467777777777788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
+++|+.-|.+-.+.... |...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 88888888876665322 455555555555
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=0.00029 Score=71.43 Aligned_cols=181 Identities=6% Similarity=-0.016 Sum_probs=128.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 292 EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTL 371 (491)
Q Consensus 292 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (491)
..+...+..|.....+.|.+++|+.+++...+.... +......+...+.+.+++++|+...++....... +....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 345778888888888889999999999888877544 4556777888888888999999888888887655 67777778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRR 451 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 451 (491)
..++.+.|++++|..+|+++...+ .-+..++..+..++...|+.++|...|+...+.. .+...-|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 888888899999999998888742 2246778888888888899999988888887752 34555555443 334
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHh
Q 011201 452 KEGENLVNEMLDE----GFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 452 ~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~ 482 (491)
..-..+++++.-. |...........|.-+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 4445556655433 222233444445444433
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00057 Score=58.53 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=164.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
++-+.-.|++..++..-+..... +.+...-..+-++|...|.+.....- +.... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcch
Confidence 45555678888887766655543 23444444566777777776544333 22222 3333333333333333444
Q ss_pred hhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 241 FDL-ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 241 ~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
.++ -.++.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+++.|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34555666655444344444445567899999999999887721 23334444455667889999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
.|.+-+ +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 998764 55677766666654 46799999999999875 46789999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHC
Q 011201 396 ILPDSVTFNCLLEDLCDVGRTVDA-DRLRLLASTK 429 (491)
Q Consensus 396 ~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 429 (491)
.. +..+...++.+-...|.-.++ .+.+..++..
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44 667776666665666665444 4455555543
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.0032 Score=63.05 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=142.1
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDL 243 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 243 (491)
....+++.+|+.-.+++.+..+..+-..++.++ ...+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 346677888888888877764222222233333 245778888888888877666555 78888888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------CHHH
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG----------RVLK 313 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----------~~~~ 313 (491)
|..+|+..... .|+......+..+|.+.+.+.+-.+.--+|-+. ..-+...+=.+++.+.+.- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999888765 556777777778888888776555444444432 2223344444444443321 1233
Q ss_pred HHHHHHHHHhCC-CCCCHhhHHHHHHHHHcCCCHhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 314 ACELVIDFSRRG-VLPKDFDYFGLVEKLCGEGNAGIALEVVD-ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 314 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-..-+...-+--+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666666554 22222222333344556777888888883 3444433334555556667777888888888888888
Q ss_pred HHCC
Q 011201 392 LKEG 395 (491)
Q Consensus 392 ~~~~ 395 (491)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8765
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=0.00026 Score=71.70 Aligned_cols=239 Identities=13% Similarity=0.088 Sum_probs=162.4
Q ss_pred CchHHHHHHH-HHHHHHcCChhHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 151 PEMERIFHFA-VNAFVKANRMNDG-LLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 151 ~~~~~~~~~l-~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
|.+-.+.-.+ =.+....|.-++| .+++.+..+ ++.....-....+++.-....... ...++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQ 89 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHH
Confidence 3333333333 3445566777766 344444433 333333333333333322222222 33468889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
-.|.....+.|++++|..+++...+.... +...+..+..++.+.+++++|+..+++....... +......+..++.+.
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999999999987433 5667888999999999999999999999987644 667777888899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLM 388 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 388 (491)
|++++|..+|+++...+. -+..++..+...+.+.|+.++|...|+...+.. .+....|+..+. +...-..++
T Consensus 168 g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~ 239 (694)
T PRK15179 168 GQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAAL 239 (694)
T ss_pred cchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHH
Confidence 999999999999998543 357788999999999999999999999988753 234566665543 344455566
Q ss_pred HHHHHCC----CCCCHHHHHHHHHHHHhc
Q 011201 389 EKMLKEG----ILPDSVTFNCLLEDLCDV 413 (491)
Q Consensus 389 ~~m~~~~----~~p~~~~~~~ll~~~~~~ 413 (491)
+++.-.+ ...........|.-|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 240 RRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 6554442 222334445555555443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.001 Score=61.99 Aligned_cols=209 Identities=12% Similarity=0.045 Sum_probs=135.3
Q ss_pred ChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 240 KFDLALGLFREMREK--GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
++.++...-++|... .-.|+...+...+.+......-..+..++.+..+. .-...-|...+ .+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 344444444444432 12345555666666555444433333333333221 11223333333 34567888899998
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 318 VIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGIL 397 (491)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 397 (491)
++.+.+... -|........+.+.+.|+.++|.+.++.+....+. ....+-.+..+|.+.|+..+|+.+++..... .+
T Consensus 329 l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p 405 (484)
T COG4783 329 LQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DP 405 (484)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CC
Confidence 888776643 36666777788888899999999999988886533 2566667778888899999999998888776 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 398 PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
-|...|..|.++|...|+..++..-. ..+|...|++++|...+....+. ++.+..+|
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 47888899999998888877776543 23456678888888888877765 23344443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=4.2e-05 Score=61.62 Aligned_cols=115 Identities=5% Similarity=-0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 351 EVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 351 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.++++..+. ++..+..+...+...|++++|...|+...... ..+...|..+..++...|++++|...|+...+..
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344554444 23335556667778888888888888887753 2256677777778888888888888888888754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 431 LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 431 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
+.+...+..+..++.+.|++++|.+.|+..++. .|+...+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 346777888888888888888888888888754 4554433
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=6.4e-05 Score=60.53 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=57.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.....+.+.|++++|...|+...... +.+..+|..+..++.+.|++++|...|+....... .+...+..+..++.+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 34555566666666666666665542 34566666666666666666666666666665432 2555566666666666
Q ss_pred CChhHHHHHHHHHHHc
Q 011201 239 KKFDLALGLFREMREK 254 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~ 254 (491)
|++++|.+.|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666554
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.5e-06 Score=50.80 Aligned_cols=33 Identities=39% Similarity=0.716 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999998887
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.00073 Score=62.96 Aligned_cols=243 Identities=14% Similarity=0.054 Sum_probs=138.6
Q ss_pred HHHHHHHHcCChhH-HHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHH
Q 011201 159 FAVNAFVKANRMND-GLLAFEAMRK--LIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR--VKPDVVTFNILIS 233 (491)
Q Consensus 159 ~l~~~~~~~~~~~~-a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~ 233 (491)
.-+..+.+.|---. -.+.|+++.. ..+..|... ++..=.-..++.++...-+.|...+ -.|+...+...+.
T Consensus 207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~ 282 (484)
T COG4783 207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIR 282 (484)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHH
Confidence 34566667775444 3577777764 223333322 2222222344555555555554321 1344444555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+......-..+..++.+-.+. --...+......+...|++++|+..++.+.+.-. -|..........+.+.++..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~ 358 (484)
T COG4783 283 AKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKE 358 (484)
T ss_pred HHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHH
Confidence 444333333333333332221 1222333334445567777777777777776532 244555556677777777778
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.++.+....... ......+.++|.+.|+..+|+.+++........ |...|..|..+|...|+..++..-..++.
T Consensus 359 A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~- 435 (484)
T COG4783 359 AIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGY- 435 (484)
T ss_pred HHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHH-
Confidence 877777777664332 445566677777778888777777777665443 77778888888888887777776665543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
...|++++|...+....+.
T Consensus 436 -----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 -----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HhCCCHHHHHHHHHHHHHh
Confidence 3356677777666666554
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=0.00011 Score=68.83 Aligned_cols=126 Identities=14% Similarity=0.228 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.....++..+...++++.|+.+|+++.+. .|++. -.++..+...++-.+|.+++++..+.. +-+......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44556677777788889999999888875 25543 457777878888888888888877653 2255666666777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
+.+.++.+.|+++.+++.+.... +..+|..|..+|.+.|++++|+..++.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888898888888876332 45688888888888899888888777653
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.6e-06 Score=50.58 Aligned_cols=31 Identities=45% Similarity=0.926 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
||.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444443
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.3e-06 Score=49.53 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIP 468 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 468 (491)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.21 E-value=0.0015 Score=65.91 Aligned_cols=167 Identities=8% Similarity=0.041 Sum_probs=125.8
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PDVVTFN 229 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~ 229 (491)
+.....|..+...|+...+...|.+.|++..+.. .-+..++....+.|++..+++.|..+.-..-+.... --...|.
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 4456789999999999889999999999998863 457888999999999999999999984433322110 0112222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHh
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEI--LVDGLCN 307 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~ 307 (491)
-..-.|.+.++...|+.-|+...+..++ |...|..+..+|.+.|++..|+++|.+..... |+ .+|.. ..-.-|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECD 642 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHH
Confidence 3334577889999999999998887665 88899999999999999999999999887654 32 23322 2334577
Q ss_pred cCCHHHHHHHHHHHHh
Q 011201 308 EGRVLKACELVIDFSR 323 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~ 323 (491)
.|.+.++...++.+..
T Consensus 643 ~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8999999998887754
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=9.7e-05 Score=58.97 Aligned_cols=108 Identities=12% Similarity=-0.017 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSG 444 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 444 (491)
......+...+...|++++|.+.|+++...+ ..+...+..+...+...|++++|..+++...+.. +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444555566667777777777777776643 2255666666777777777777777777766653 3356666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 445 YTRENRRKEGENLVNEMLDEGFIPDLATYNSY 476 (491)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 476 (491)
|...|++++|.+.|++..+. .|+...+..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 77777777777777777744 4555554433
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3.1e-06 Score=48.99 Aligned_cols=31 Identities=39% Similarity=0.625 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCN 257 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 257 (491)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.003 Score=53.88 Aligned_cols=189 Identities=15% Similarity=0.000 Sum_probs=130.8
Q ss_pred hcCChhHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 237 RNKKFDLALGLFREMREK---G-CNPNVV-SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345778888888887653 4 555554 35566777778889999999999887653 21222222222233456889
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
++|+++++.+++.+. .|..++..-+-..-..|+--+|++-+.+..+.-+ .|...|..+...|...|++++|.--++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999888773 3666777666667777777788888877777633 48889999999999999999999888888
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHHCC
Q 011201 392 LKEGILPDS-VTFNCLLEDLCDVG---RTVDADRLRLLASTKG 430 (491)
Q Consensus 392 ~~~~~~p~~-~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g 430 (491)
+-. .|.. ..+..+...+.-.| +++.+.+++....+..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 874 4544 44455555444443 4566777888777753
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=0.00013 Score=58.14 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
.......+...+.+.|++++|.+.|+.+.... +.+...|..+...+.+.|++++|...++...+.+ +.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 34455566666777777777777777776642 3456667777777777777777777777765553 22455566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 011201 233 SGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
..+...|++++|.+.|++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777766664
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.0003 Score=65.98 Aligned_cols=123 Identities=14% Similarity=0.033 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 343 (491)
..|+..+...++++.|+++++++.+.. | .....++..+...++-.+|.+++.+..+.... +..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 345555556667777777777776654 2 23344566666666667777777766654332 444455556667777
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
++.+.|.++.+++.+..+. +..+|..|..+|.+.|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777765433 55677778888888888888877776654
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00034 Score=56.53 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPS--VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLE 408 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~ 408 (491)
|..++..+ ..++...+.+.++.+......-. ....-.+...+...|++++|...|+........++ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 36677777777777776543211 22233344667777888888888888877652222 123444566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
.+...|++++|...++...... .....+....+.|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888876644332 23455666777888888888888888764
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=9e-05 Score=69.69 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKE--GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHIL 441 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 441 (491)
+......++..+....+.+++..++.+.... ....-..|..++++.|.+.|..+++..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555666665555544 11122334446666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 442 VSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNA 483 (491)
Q Consensus 442 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 483 (491)
|+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666665555545555555555555443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00034 Score=56.54 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGR-PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV--VTFNILIS 233 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~li~ 233 (491)
|..++..+ ..++...+...++.+.+..+.. ....+.-.+...+...|++++|...|+........++. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33334433 3556666666666665542111 01122333445555666666666666666554422211 12233445
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYE 285 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 285 (491)
.+...|++++|+..++......+ ....+......|.+.|+.++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55556666666666654332222 233444455556666666666665554
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.00012 Score=68.92 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 255 GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 255 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
+...+......+++.+....+++++..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||.++
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557778888888888888888899888888765 3333445667899999999999999999988888899999999
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
++.||+.+.+.|++..|.++..+|...+...+..++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888877666777777777666654
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0073 Score=51.60 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=140.7
Q ss_pred hcCCHHHHHHHHHHHhhC---C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcCCC
Q 011201 202 KCREFDKALGFYDRMVRD---R-VKPDVV-TFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI-RGFFGERK 275 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~ 275 (491)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++.++- |.+.-...|= --+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 346789999999888653 4 555655 45566777888999999999999998873 3433222222 22345699
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 276 FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 276 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
+++|+++|+.+.+.+ +-|..++---+...-..|+--+|++-+.+..+.- ..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999887 3367777766667777788888888888777763 44888999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 011201 356 LWKKGNLPSVIACTTLIEGLRRLR---KGVEASGLMEKMLKE 394 (491)
Q Consensus 356 m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 394 (491)
+.-..+. +...+..+...+.-.| +.+-+.++|.+..+.
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9886543 5566666666655544 455688889888874
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.00 E-value=0.016 Score=55.06 Aligned_cols=152 Identities=13% Similarity=0.028 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-SVIACTTLIEGLRRLRKGVEASGLME 389 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 389 (491)
.+....+++.++..-..--..+|..+++.-.+..-++.|..+|.+..+.+..+ ++..+++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666677777655433334568889999999999999999999999987766 78889999998875 77789999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 390 KMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 390 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.-.+. ..-+..--...+.-+...++-..+..+|+.....++.+| ..+|..+|.-=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77665 222344445677778889999999999999999866655 588999999989999999999998888654
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1e-05 Score=45.62 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887764
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.2e-05 Score=45.34 Aligned_cols=27 Identities=52% Similarity=1.003 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
|+.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.94 E-value=0.00017 Score=53.10 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKEGI-LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--.. .-.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~---------------------------~ie~ 83 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE---------------------------DIEN 83 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch---------------------------hHHH
Confidence 34444444555555555555555555 5555555555555443211000 0011
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 450 RRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 450 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
+.-+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 333456666666666666666666666666654
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.92 E-value=0.00018 Score=53.02 Aligned_cols=75 Identities=16% Similarity=0.393 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRV-KPDVVTFNILISGFCRNK--------KFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
.|.-+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666555432 122344455555555555555555555
Q ss_pred HHHH
Q 011201 267 IRGF 270 (491)
Q Consensus 267 i~~~ 270 (491)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 5443
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=0.015 Score=51.28 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=32.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKE--GILPDSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
+..-|.+.|.+..|..-++.+++. +..........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344466666666666666666664 33333445556666666666666666655443
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.044 Score=55.30 Aligned_cols=228 Identities=15% Similarity=0.130 Sum_probs=153.5
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH--HHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 117 RSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA--FVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
--....++|..|.+....+.+.... ..+..++.+ +.+.|+.++|..+++......+ .|..+..
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn-------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq 81 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPN-------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQ 81 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCC-------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHH
Confidence 3445668899999999888775422 224444444 4579999999988888876543 4889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+-.+|.+.++.++|..+|++..+. .|+......+..+|.+.+++.+-.+.--+|-+. +.-+...+=++++...+.-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 9999999999999999999998765 567777788888999988876544443333332 1113333334444443321
Q ss_pred C----------HHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 275 K----------FDEGVNMAYEMIELG-CEFSSVTCEILVDGLCNEGRVLKACELV-IDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 275 ~----------~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
. ..-|.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++ ....+.-...+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 234556666666554 2112222222233445678899999998 444455444455555677888899
Q ss_pred CCCHhHHHHHHHHHHHcCCC
Q 011201 343 EGNAGIALEVVDELWKKGNL 362 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~ 362 (491)
.+++.+..++-.++...|..
T Consensus 239 l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGND 258 (932)
T ss_pred hcChHHHHHHHHHHHHhCCc
Confidence 99999999999999998754
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.84 E-value=0.00042 Score=57.83 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 187 RPSVSIYNVLINGFVKC-----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
..+-.+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 46777888888887754 6788888888899999999999999999988754
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.0038 Score=56.77 Aligned_cols=173 Identities=15% Similarity=0.190 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP----SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
..|......|...|++++|.+.|.+........- -...|.....+|.+. ++++|.+.+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH--------------
Confidence 4566677788888999998888887654311000 112233333333333 555555555443
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE-RKFDEGVNMAYEMIEL----GCE-FSSVTCEILVDG 304 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~ 304 (491)
+..|.+.|++..|-+++.++- ..|... |++++|++.|++..+. |-. --...+..+...
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345666677666655555433 345555 7777777777766432 210 012344556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----Hh-hHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 305 LCNEGRVLKACELVIDFSRRGVLPK-----DF-DYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+.+.|++++|.++|+++.......+ .. .+...+-++...||...|.+.+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777665432211 11 122223344445666666666666554
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.025 Score=51.88 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED 409 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 409 (491)
..+.+.-|.-+...|+...|.++-.+. -.|+-.-|-..+.+++..++|++..++... . -.+.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 345566677778889888888876655 236888899999999999999988876542 1 134678889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 410 LCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
|.+.|+..+|..+... ..+..-+..|.+.|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888755 22255677888999999988776554
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.0012 Score=51.05 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILI 232 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li 232 (491)
++..++..+.+.|++++|.+.|+.+.+.....+ ....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566667777778888777777766431111 1345566777777777777777777777654211 1234556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC
Q 011201 233 SGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66777777777777777777653
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.0096 Score=58.06 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
.+|+.+.+.++....|++|.+.|..-.. . ...+.++.+..++++-+.+...+.+ |....-.+..++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHH
Confidence 4566666666666666666666554221 1 1234444444445444444433332 445556666777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
.+.|.-++|.+.|-+.- .+ ...+..|...+++.+|.++-+.
T Consensus 863 ~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777766554421 11 2345556666666666665443
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00065 Score=49.78 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+..+...+...|++++|+..++.+.+.. +.+...+..+...+...+++++|.+.|+........ +...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 3445556666777777777777766542 233455666666666777777777777766554322 3345556666666
Q ss_pred hcCChhHHHHHHHHHHH
Q 011201 237 RNKKFDLALGLFREMRE 253 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~ 253 (491)
..|++++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666544
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0022 Score=53.51 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD--VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455677777788888888888888888776533222 356777778888888888888888887775332 45566666
Q ss_pred HHHHHcCCCHHH
Q 011201 267 IRGFFGERKFDE 278 (491)
Q Consensus 267 i~~~~~~g~~~~ 278 (491)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 667777666443
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00065 Score=49.79 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 344555555666666666666665544211 2344555555566666666666666665554322 33455555555556
Q ss_pred CCCHHHHHHHHHHHHH
Q 011201 273 ERKFDEGVNMAYEMIE 288 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~ 288 (491)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666665555443
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.0021 Score=49.75 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLI 267 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li 267 (491)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.|+++...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666667777777777666554211 01234455666666667777777777666654211 1134455566
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666553
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=0.00012 Score=52.84 Aligned_cols=82 Identities=10% Similarity=0.215 Sum_probs=43.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++++|+.+|+++.+.....++...+-.+..+|.+.|++++|.++++. .+.+.. +....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566677777777666532111333444466666777777777777665 221111 22333344566666667777666
Q ss_pred HHHH
Q 011201 247 LFRE 250 (491)
Q Consensus 247 ~~~~ 250 (491)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0027 Score=52.99 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNIL 231 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 231 (491)
....+..+...+...|++++|+..|++..+.....++ ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 3456788888999999999999999998875322222 467889999999999999999999998875322 45667777
Q ss_pred HHHHHhcCChhHHHHHHH
Q 011201 232 ISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~ 249 (491)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 778888777655444333
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0013 Score=54.67 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP--DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
....|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|++.+++....... ...++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 35566777777778888888888888876543222 2346777777888888888888888877765221 34455555
Q ss_pred HHHHH-------cCCCHHHHHHHHHH
Q 011201 267 IRGFF-------GERKFDEGVNMAYE 285 (491)
Q Consensus 267 i~~~~-------~~g~~~~a~~~~~~ 285 (491)
...+. ..|++++|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 55555 55565555444443
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0025 Score=57.72 Aligned_cols=131 Identities=8% Similarity=0.083 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA-FVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
.+|..+++.+.+.+..+.|..+|.+....+.. .-.+|...... |.-.++.+.|..+|+...+.+ ..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-----------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-----------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CC
Confidence 35677777777877788888888888754311 12344444444 223455666888888877765 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+...|..-++.+.+.|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777888888888888888888887655 22222 36777777777777777777777777664
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00012 Score=52.69 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011201 204 REFDKALGFYDRMVRDRVK-PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM 282 (491)
Q Consensus 204 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 282 (491)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+.+.. +......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555443221 1222333345555555555555555544 111111 222222334455555555555555
Q ss_pred HHH
Q 011201 283 AYE 285 (491)
Q Consensus 283 ~~~ 285 (491)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0023 Score=60.19 Aligned_cols=91 Identities=7% Similarity=-0.070 Sum_probs=57.9
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 011201 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT 416 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 416 (491)
...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++++++.. ..+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 44455667777777777777665443 55666666666677777777777777766642 11455566666666677777
Q ss_pred HHHHHHHHHHHHC
Q 011201 417 VDADRLRLLASTK 429 (491)
Q Consensus 417 ~~a~~~~~~~~~~ 429 (491)
++|...++...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666654
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.59 E-value=0.018 Score=49.46 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=72.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---
Q 011201 234 GFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE--- 308 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 308 (491)
.+...|++++|.+.|+++...... --....-.++.++.+.|++++|...++++.+.-......-+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 344556666666666666554211 112334455556666666666666666665543222222222222222111
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 309 ----------GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 309 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
+...+|... +..++.-|-.+.-..+|.+.+..+.+. =...--.+..-|.+.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred ccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 111222222 233333344444455555544444332 011112244556666
Q ss_pred CChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 011201 379 RKGVEASGLMEKMLKEGILPD----SVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 379 g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a 419 (491)
|.+..|..-++.+++. -|+ ......++.++.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777666666664 222 23445555566666665533
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0018 Score=58.63 Aligned_cols=130 Identities=10% Similarity=0.004 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEK-LCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
+|..++...-+.+..+.|.++|.+..+.+. .+..+|...... |...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455556666666666666666666653321 122233333333 22234455566666665553 222455555556666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 376 RRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.+.|+.+.|..+|++.+.. +.++ ...|...+.-=.+.|+++.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666655543 2211 135555555555555555555555555543
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.047 Score=48.24 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=13.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLI 184 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (491)
.++.++.+.+++++|+..|++..+..
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34444555555555555555555443
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.58 E-value=0.0028 Score=50.54 Aligned_cols=96 Identities=7% Similarity=0.005 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
.+..+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34445556667788888888888777652 345666777777777778888888888877666543 666777777777
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 011201 236 CRNKKFDLALGLFREMREK 254 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~ 254 (491)
...|+.+.|.+-|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888877766654
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0026 Score=52.86 Aligned_cols=121 Identities=9% Similarity=-0.074 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP--DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|+.++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666777777777777776542222 12456666667777777777777777766542 22344455555
Q ss_pred HHHH-------hcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCc
Q 011201 443 SGYT-------RENRRKEGENLVNEMLDE---GFIPDLATYNSYMDGLSNARKS 486 (491)
Q Consensus 443 ~~~~-------~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~ 486 (491)
..+. ..|++++|...+++.... .+..+...+......+...|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 5555 677777555555443221 1222333334444444444444
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.02 Score=52.06 Aligned_cols=178 Identities=9% Similarity=0.095 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.|......+-..+++++|...|........... ........|.....+|.+. ++++|+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-----~~~~Aa~~~~~Aa~~~k~~-~~~~Ai---------------- 94 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG-----DKFEAAKAYEEAANCYKKG-DPDEAI---------------- 94 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-THHHHH----------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhh-CHHHHH----------------
Confidence 466667777788888888777765532110000 0001112233333333222 333333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCC-CHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN-KKFDLALGLFREMREK----GCNP-NVVSFN 264 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~----g~~p-~~~~~~ 264 (491)
..|...+..|.+.|++..|-+.+.++- ..|-+. |++++|++.|++..+. |-.- -...+.
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 345555667788888888877776653 335555 7888888888776543 2100 133456
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-----h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIELGCEFS-----S-VTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
.+...+.+.|++++|.++|++....-...+ . ..+...+-++...||...|.+.+++.....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 677788899999999999998876533211 1 122223335556789999999998887653
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.51 E-value=0.0038 Score=49.80 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=50.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
+...+...|++++|.++|+-+...... +..-|..|..++-..|++++|+..|......++ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 333445556666666666655554333 445555555555566666666666666655543 245555555556666666
Q ss_pred HHHHHHHHHHHHh
Q 011201 311 VLKACELVIDFSR 323 (491)
Q Consensus 311 ~~~a~~~~~~~~~ 323 (491)
.+.|.+-|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 176
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.024 Score=48.79 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-----
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLV----- 337 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 337 (491)
.+.++..+.-.|.+.-....+.+.++...+.+......+.+.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345556666666777777777777766655566666777777777777777777777665543333333333322
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
..|...+++..|...++++...+.. ++..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556666666666666655433 3444443333334456666677666666663
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.033 Score=51.20 Aligned_cols=161 Identities=16% Similarity=0.070 Sum_probs=80.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.....+.+..++.+|+..+....+.. +.+...|..-...+...+++++|.--.+.-.+.... ......-.-+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 33455677788888888888888763 345666776777777778888877666554332100 111222223333333
Q ss_pred CChhHHHHHHH---------------HHHHcCC-CCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 239 KKFDLALGLFR---------------EMREKGC-NPNVVSFNTL-IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 239 ~~~~~A~~~~~---------------~m~~~g~-~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
++..+|.+.++ ....... +|...+|..+ ..++.-.|++++|...--...+... ...+...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHH
Confidence 44444443333 1111111 1222333332 2244456666666665555544331 1222233
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHhCC
Q 011201 302 VD--GLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 302 l~--~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
++ ++.-.++.+.+...|++.++.+
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC
Confidence 32 2233456666666666655543
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.0021 Score=53.75 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011201 259 NVVSFNTLIRGFFGE-----RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDY 333 (491)
Q Consensus 259 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 333 (491)
|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 777777777777643 5666666677777777777777777777776543 2221 11111111110
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 334 FGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 334 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.-.+.+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 115 --------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 --------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 11234556777777777777777777777777775444
No 179
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0044 Score=58.31 Aligned_cols=93 Identities=6% Similarity=0.011 Sum_probs=77.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
....+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 3556678899999999999998863 456788888899999999999999999998876432 6677888888999999
Q ss_pred ChhHHHHHHHHHHHcC
Q 011201 240 KFDLALGLFREMREKG 255 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g 255 (491)
++++|+..|++..+..
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999988764
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.43 E-value=0.037 Score=47.53 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..+-.....+.+.|++.+|++.|+.+.......+ -..+.-.++.++.+.|++++|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556667788999999999999988643322 2455667788889999999999999998775
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.34 E-value=0.016 Score=57.15 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
...|.++.-.....|++++|...++++.+.. |+...|..+...|...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444566666666666666543 455566666666666666666666666655
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0038 Score=54.74 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=45.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGE 455 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 455 (491)
+.+++.+|+..|.+.++. .| |.+-|..=..+|++.|.++.|++-.+..+... +--...|..|..+|...|++++|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 445555555555555542 22 33334444445555555555555444444321 112344555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 011201 456 NLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 456 ~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
+.|++.+ .+.|+..+|..=+.
T Consensus 170 ~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhh--ccCCCcHHHHHHHH
Confidence 5555554 34455554444333
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.021 Score=56.40 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC--------hh
Q 011201 105 FRHDHTTFLFIVRSLASSY-----RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR--------MN 171 (491)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~ 171 (491)
.+.+..+|...+++..... .+..|..+|++.++.. |+...++..+..++..... +.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-----------P~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-----------PDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 3557788888888865543 3678999999988754 4445556555444432211 12
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
.+.+..++.........+...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222222222211112333445555444444555666666555555543 34555555555555555555555555555
Q ss_pred HHc
Q 011201 252 REK 254 (491)
Q Consensus 252 ~~~ 254 (491)
...
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 443
No 184
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.24 Score=49.29 Aligned_cols=128 Identities=9% Similarity=0.107 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CCCHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG-RPSVSI 192 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 192 (491)
.+|.-+...+.+..|.++...+...-... ..+|......+.+..+..+ .++++.+.+..+. .-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-----------~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iS 509 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-----------DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGIS 509 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-----------cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCcee
Confidence 45666667777777777776664321110 2456666666666543221 2344444433222 123345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVK----PDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
|..+......+|+++.|..+++.=...+.. .+..-+...+.-+.+.||.+-...++-.|..
T Consensus 510 y~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 510 YAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 666666667778888888877643222110 1222334445556666777766666666554
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.0014 Score=44.80 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
.+.|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677778888887777653 346677777777777888888888877777665
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.039 Score=53.53 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCChhHHHHHH---------HHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCh
Q 011201 157 FHFAVNAFVKANRMNDGLLAF---------EAMRKLIDGRPSVSIYNVLINGFVKCRE--FDKALGFYDRMVRDRVKPDV 225 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 225 (491)
+..-+..|...|.+++|.++- +.+-.. ..+.-.++..-++|.+-.+ +-+...-+++|+++|-.|+.
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 444566788888888875531 111110 1233334555556665544 33344445567777766776
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 226 VTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
.. +...++-.|.+.+|-++|.+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH
Confidence 53 33445556777777777764
No 187
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.20 E-value=0.19 Score=46.87 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHcCCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 011201 331 FDYFGLVEKLCGEGNAGIALEVVDELWKKG-NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTF-NCLLE 408 (491)
Q Consensus 331 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~ 408 (491)
.+|...++.-.+..-++.|..+|-++.+.+ +.+++..++++|..++. |+..-|..+|+.-... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356667777777888999999999999888 56788889999987764 7778899999876654 3454443 45556
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
-+...++-+.|..+|+..+++ +..+ ...|..+|.--..-|+...+..+=++|.+. .|-..+-.....-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 667889999999998865543 2223 577888898888889998888888888743 45554444444433
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.024 Score=43.57 Aligned_cols=104 Identities=22% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD----GMTYHILVSGY 445 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~ 445 (491)
..++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445556666666666666666655433 2344455556666677777776666665531 22 12222233355
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 446 TRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
...|+.++|++.+-.... ++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 566777777666655442 23335555444443
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.012 Score=53.83 Aligned_cols=264 Identities=17% Similarity=0.106 Sum_probs=151.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HhhC--CCC-CChhhHHHH
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDR--MVRD--RVK-PDVVTFNIL 231 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~--m~~~--~~~-p~~~~~~~l 231 (491)
...+++.|+....+.+|+...+.+ .-|. ..|..|.++|.-.+++++|+++... ...+ |-+ -...+-..|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 456899999999999999999874 3343 3477777788888899999886542 1111 100 011222233
Q ss_pred HHHHHhcCChhHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHcCCC--------------------HHHHHHHHHHH
Q 011201 232 ISGFCRNKKFDLALGLFRE----MREKGCN-PNVVSFNTLIRGFFGERK--------------------FDEGVNMAYEM 286 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m 286 (491)
.+.+--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 3344445666665433221 1111110 123345556666654442 23344444332
Q ss_pred H----HcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 287 I----ELGCE-FSSVTCEILVDGLCNEGRVLKACELVIDFS----RRGVL-PKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 287 ~----~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
. +.|-. .--..|..|.+.|.-.|+++.|+...+.-+ +.|-. .....+..+.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 1 11100 012455666666777788888887665432 22322 22345677888888888898888888764
Q ss_pred HH----cCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 357 WK----KGN-LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE-----GILPDSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 357 ~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
.. .|- .....+..+|...|.-..++++|+.++.+-..- ...-....+-+|..+|...|..++|..+.+..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 221 123445566777777778888888887654331 11123456667777888888888887765543
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0071 Score=53.08 Aligned_cols=87 Identities=16% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
..+.+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+..+..+.. -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 44455666666666666554322 4455555555555666555555555444443322 233445555555555555555
Q ss_pred HHHHHHHHH
Q 011201 350 LEVVDELWK 358 (491)
Q Consensus 350 ~~~~~~m~~ 358 (491)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555544443
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0095 Score=52.58 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR---NKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+-|...|-.|...|...|+++.|..-|.+..+.. ..|...+..+..++.. ..+..++.++|+++...... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3456666666666666666666666666655432 1133333333333222 22345566666666655333 45555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666666666666666666654
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.048 Score=48.29 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 011201 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDV---GRTVDADRLRLLASTK 429 (491)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 429 (491)
++.-...++. |...|-.|...|...|+++.|..-|.+..+. -..+...+..+..++... ....++..+++++...
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333344433 7788888888888888888888888888775 122455555555554433 2356777788888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 430 GLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 430 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
. +-|+....-|...+...|++++|...|+.|.+. -|....+..+++
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 3 335666666777888888888888888888854 344444444443
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.17 Score=43.74 Aligned_cols=131 Identities=11% Similarity=-0.047 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH----
Q 011201 298 CEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE---- 373 (491)
Q Consensus 298 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~---- 373 (491)
.+.++..+.-.|.+.-....+.+.++...+.+......+.+.-.+.||.+.|...|+...+..-..+..+++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444444445555656666666666655555555566666666666666666666665554333334344433332
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 374 -GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 374 -~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.|.-.+++.+|...+.+....+-+ |....|.-.-+..-.|+...|.+.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233444555555555555544211 2222222222223345666666666666554
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.27 Score=48.50 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=91.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHH-----
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIAC----- 368 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----- 368 (491)
+....-.+..++.+.|.-++|.+.+-. .+.+ .+-+..|...+++.+|.++-+...-. .+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~----qv~tliak~a 917 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLP----QVQTLIAKQA 917 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccch----hHHHHHHHHH
Confidence 444555566667777776666655422 2111 23345555666666666655443211 11111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH----HHHHHHHH-H----------HHhcCChHHHH
Q 011201 369 ---------TTLIEGLRRLRKGVEASGLMEKMLKE----GILPDS----VTFNCLLE-D----------LCDVGRTVDAD 420 (491)
Q Consensus 369 ---------~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~----~~~~~ll~-~----------~~~~g~~~~a~ 420 (491)
-.-|..+.+.|+.-+|.+++.+|-+. +.++-. ....+++- - --..|..++|.
T Consensus 918 aqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat 997 (1189)
T KOG2041|consen 918 AQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDAT 997 (1189)
T ss_pred HHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhh
Confidence 11244566677777777777777654 332221 11222211 1 11235566666
Q ss_pred HHHHHHHHC-------CCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 011201 421 RLRLLASTK-------GLDPDGMTYHILV--SGYTRENRRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 421 ~~~~~~~~~-------g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g 484 (491)
.+++...-. +.-...+.|..+| .--...|.++.|++..-.+.+. .+-|...+|..+.-+-+...
T Consensus 998 ~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 998 DLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred hhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhh
Confidence 544332110 0011234454444 4456679999998876665543 56777888877766555443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.0027 Score=43.38 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=38.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 411 CDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYM 477 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 477 (491)
.+.|++++|..+++.+.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 34566777777777666553 225566666677777777777777777776643 45544444443
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.05 E-value=0.0054 Score=41.47 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
..+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555532 22445555555555555555555555555544
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.05 E-value=0.081 Score=40.47 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
......+..+...|+-+...+++.++.+ +-+++......+..+|.+.|+..++.+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555666666666666666554 2345555666666666666666666666666666554
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.015 Score=53.30 Aligned_cols=272 Identities=14% Similarity=0.032 Sum_probs=163.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH---HH-hcCCCCCHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAM---RK-LIDGRPSVS 191 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~-~~~~~~~~~ 191 (491)
..-++++|+....+.+|+..++.|.. .......+|..+.++|.-.+++++|+++...= .+ .++..-...
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 45688999999999999999887743 11223457888888999999999998865421 11 111111223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH----HhhCCC-CCChhhHHHHHHHHHhcCC--------------------hhHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDR----MVRDRV-KPDVVTFNILISGFCRNKK--------------------FDLALG 246 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~-~p~~~~~~~li~~~~~~~~--------------------~~~A~~ 246 (491)
+...|.+.+--.|.+++|...-.+ ..+.|- ......+..|...|...|+ ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 333444455555666666543221 111110 0123344445555544432 234555
Q ss_pred HHHHHHH----cCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCCHHHHHH
Q 011201 247 LFREMRE----KGCN-PNVVSFNTLIRGFFGERKFDEGVNMAYEMI----ELGCE-FSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 247 ~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+|.+-.+ .|-. ..-..|..|-+.|.-.|+++.|+...+.-. +-|-+ .....+..+.+++.-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5543221 1100 012345566666677789999987765432 22311 123567778888889999999999
Q ss_pred HHHHHH----hCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 317 LVIDFS----RRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK-----GNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 317 ~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
.++... +.|- ........+|.+.|.-..++++|+..+.+-... ...-....+-+|..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 887643 2221 223456677888888888899999887764321 111145677788999999999999998
Q ss_pred HHHHHHHC
Q 011201 387 LMEKMLKE 394 (491)
Q Consensus 387 ~~~~m~~~ 394 (491)
+.+.-.+.
T Consensus 337 fae~hl~~ 344 (639)
T KOG1130|consen 337 FAELHLRS 344 (639)
T ss_pred HHHHHHHH
Confidence 88766553
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.058 Score=41.44 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444443322 1222233344444444444444444443
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.00 E-value=0.0041 Score=42.68 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMI 287 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 287 (491)
.|..+...+.+.|++++|+..|++..+.... +...|..+..++.+.| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443221 3334444444444444 3444444444433
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.98 E-value=0.0045 Score=41.87 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=22.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
+.+.|++++|.+.|+++.+.... +...+..+..++.+.|++++|..+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444443321 33444444444444444444444444443
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.96 E-value=0.022 Score=45.95 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
.....|+.+.+...++++....... ++... ..=.......++.+. ......++..+...|+
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccC
Confidence 3456778888888888877653221 12111 011111222222221 1234556666777788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----HcCCCCChhhHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI-----ELGCEFSSVTCE 299 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 299 (491)
+++|.++.+.+.....- |...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 78 ~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 78 YEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 88888888877776443 66777888888888888888888777664 347777765543
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.039 Score=44.53 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE-----KGCNPNVVS 262 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~ 262 (491)
+...++..+...|++++|.++.+.+....+. |...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445556666666666666666666654322 556666666666666666666666666532 366666554
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.0069 Score=41.51 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVR 218 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~ 218 (491)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567777778888888888888888877763 346677777778888887 68888888777654
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.024 Score=50.57 Aligned_cols=94 Identities=15% Similarity=0.024 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDV----VTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTL 266 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l 266 (491)
|+..+..+.+.|++++|...|+.+.+.- |+. ..+..+...|...|++++|...|+.+.+.-.. .....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344445555555555544431 211 23334444444555555555555554433110 012233333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~ 288 (491)
...+...|+.++|..+|+.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555554444
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.88 E-value=0.34 Score=45.19 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35566677888888888999999988888855
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.87 E-value=0.031 Score=49.83 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVT 227 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~ 227 (491)
...|...+..+.+.|++++|+..|+.+.+.. |+ ..++-.+...|...|++++|...|+.+.+.-.. .....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567777777778899999999999999874 43 356778889999999999999999999865211 12344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+-.+...+.+.|+.++|.++|+++.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555667788999999999999999886
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.87 E-value=0.031 Score=43.41 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
|..++..+|.++++.|+.+....+++..= |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777776666665432 2221110 00000 1122334566666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 011201 444 GYTRENRRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g 484 (491)
+|+..|++..|+++.+...+. ++..+..+|..|++-+...-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 777777777777776666544 56666666666666554433
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.41 Score=44.34 Aligned_cols=257 Identities=13% Similarity=0.035 Sum_probs=151.0
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 117 RSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
..+.+..++..|+..+...+.. ||++..-|..-...+...|++++|..-.+.-.+... -....+.-.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~-----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~ 123 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM-----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLRE 123 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh-----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCC--Cccccccch
Confidence 3444555666666666666553 355556666667777777777777655544433211 011112222
Q ss_pred HHHHHhcCCHHHHHHHHH---------------HHhhCCC-CCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011201 197 INGFVKCREFDKALGFYD---------------RMVRDRV-KPDVVTFNIL-ISGFCRNKKFDLALGLFREMREKGCNPN 259 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~---------------~m~~~~~-~p~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g~~p~ 259 (491)
-.++...++..+|.+.++ ....... +|.-.+|..+ ..++.-.|+.++|.+.--...+.. .
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~ 200 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---A 200 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---c
Confidence 222222223333332222 2211111 1333444433 245667789999888877776652 1
Q ss_pred HHHHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCChhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 260 VVSFNTLIR--GFFGERKFDEGVNMAYEMIELGCEFSSVT-------------CEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 260 ~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
...+..+++ ++.-.++.+.+...|++.+..+. +... +..-.+-..+.|.+.+|.+.+.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 223344444 34457788888888888776542 2211 111233456789999999999988865
Q ss_pred C---CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHC
Q 011201 325 G---VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI--EGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 325 ~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+ ..++...|........+.|+..+|+.--++..+.+ +......+. .++...+++++|.+-|++..+.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 55667778888888889999999999888887753 233333333 3455678899999999888775
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.43 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.054 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555666666666666666666666653
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.82 E-value=0.4 Score=44.15 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. .-++..|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444455555555555443332 13555555555555555555554433211 1123455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEV 352 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 352 (491)
.|...+|..++.. ..+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 5555555555433 1123445555555555555443
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.82 E-value=0.21 Score=40.87 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRRLR 379 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g 379 (491)
|..+..+.|+..+|...|++...--..-|......+.++....++...|...++++.+.... -++.+...+...|...|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 33334444444444444444333222333333333444444444444444444444332110 01112223344455555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
+..+|..-|+.... .-|+...-......+.++|+.+++..
T Consensus 175 ~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 175 KYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55555555555554 23333322222333344554444443
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.79 E-value=0.0064 Score=42.92 Aligned_cols=66 Identities=14% Similarity=0.353 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI---DG-RPS-VSIYNVLINGFVKCREFDKALGFYDRMV 217 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 217 (491)
....+++.+...|...|++++|+..|++..+.. |. .++ ..+++.+..+|...|++++|++.+++..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677888888888888888888888776431 11 122 4567777778888888888888877654
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.77 E-value=0.042 Score=44.18 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
....-+-..|++++|..+|..+.... .-+..-|..|..++-..+++++|...|......+.. |...+-....++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 33444557888999988888877642 346666777888888888888888888876554432 555555677788888
Q ss_pred CChhHHHHHHHHHHHc
Q 011201 239 KKFDLALGLFREMREK 254 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~ 254 (491)
|+.+.|.+.|....++
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888877763
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.75 E-value=0.24 Score=40.59 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=104.7
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE---GILPDSV 401 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~ 401 (491)
...|+...-..|..++...|+..+|...|.+....-..-|......+.++....+++.+|...++++.+. +-.||
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 3457777778899999999999999999999887555568888889999999999999999999999886 33444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+...+.+.+...|+..+|+.-|+...+. .|+...-......+.+.|+.++|..-+.++
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3456677889999999999999999886 455555444556677888777765544443
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.54 Score=44.08 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEG-ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTY-HILV 442 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li 442 (491)
...|...+..-.+....+.|..+|-++.+.| +.++...+++++.-+| .|+..-|..+|+.-..+ -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3467778888888888999999999999988 6688889999998765 58888899998875554 2454444 4456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcc
Q 011201 443 SGYTRENRRKEGENLVNEMLDEGFIPD--LATYNSYMDGLSNARKSV 487 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~ 487 (491)
.-+.+-++-+.|..+|+..+.+ +.-+ ..+|..+|.--+.-|+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 6777889989999999966543 2223 467888887777777664
No 217
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.19 Score=42.97 Aligned_cols=208 Identities=15% Similarity=0.067 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 107 HDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
--...|.....++..+++|++|...+.+...-. ..=-..+-...-++.|..+.+++.+.
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~y------------------EnnrslfhAAKayEqaamLake~~kl--- 87 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY------------------ENNRSLFHAAKAYEQAAMLAKELSKL--- 87 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH------------------HhcccHHHHHHHHHHHHHHHHHHHHh---
Confidence 334567777788888889998888777664211 00011122233345666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCCCHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK---G--CNPNVV 261 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g--~~p~~~ 261 (491)
.--+..|+--..+|..+|..+-|-..+++.-+ ..+..+.++|+++|++...- + .+.-..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 12244566777778888888777777666433 12334455555555543221 0 000122
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGC----EFSS-VTCEILVDGLCNEGRVLKACELVIDFSRRG---VLPKDFDY 333 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 333 (491)
.+..+-+++.+...+++|-..+.+-..... .++. ..|...|-.+.-..++..|..+++.-.+.+ -.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 334444555566666665544443221100 0011 122333334444456666666665533321 11123344
Q ss_pred HHHHHHHHcCCCHhHHHHH
Q 011201 334 FGLVEKLCGEGNAGIALEV 352 (491)
Q Consensus 334 ~~li~~~~~~g~~~~a~~~ 352 (491)
..|+.+| ..||.+++.++
T Consensus 232 enLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHh-ccCCHHHHHHH
Confidence 4444444 23444444443
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.53 E-value=0.051 Score=42.20 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE 373 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 373 (491)
|..++..+|.++++.|+.+....+++..- |+..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666666777777666666665443 22211100 0000 0112234577777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 011201 374 GLRRLRKGVEASGLMEKMLKE-GILPDSVTFNCLLEDLC 411 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 411 (491)
+|+..|++..|+++.+...+. ++..+..+|..|++-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777665 66666777777776443
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.12 Score=48.93 Aligned_cols=69 Identities=19% Similarity=0.082 Sum_probs=60.5
Q ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 148 FSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
-..|.....++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999999988873 553 45899999999999999999999998874
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.49 E-value=0.77 Score=43.20 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMER-IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
.+-+.+++.++..+|.++.......+ + .-..+ .-+.++++|.. ++.+.-...+....+..|..+-...+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~----f--~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSP----F--LLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcch----H--HHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 45677899999999988865432110 0 00112 23455666654 44555555666666654322322223222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC--CCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC
Q 011201 197 INGFVKCREFDKALGFYDRMVRD--RVKP------------DVVTFNILISGFCRNKKFDLALGLFREMREKG----CNP 258 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~p 258 (491)
.+.+.+.+++|.+.+....+. +-.+ |-..=+..++++.+.|++.++..++++|..+= ..-
T Consensus 88 --~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 88 --VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred --HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 244678888888888776554 2221 11122566788889999999998888887642 335
Q ss_pred CHHHHHHHHHHHH
Q 011201 259 NVVSFNTLIRGFF 271 (491)
Q Consensus 259 ~~~~~~~li~~~~ 271 (491)
+..+|+.++-.+.
T Consensus 166 ~~d~yd~~vlmls 178 (549)
T PF07079_consen 166 NSDMYDRAVLMLS 178 (549)
T ss_pred cHHHHHHHHHHHh
Confidence 7778877554443
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.45 E-value=0.2 Score=38.41 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=79.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
-.|.+++..+++.+..... +..-+|.+|--....-+-+...++++.+-+ ..|... .|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchh----------hcchHHHHH
Confidence 3577777788777776553 333455555444444444444444444332 122221 223322222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
-+-.+ ..+...+...+..+...|+-|+-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+..++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22111 1244556677788899999999999999887643 67888899999999999999999999999999987
Q ss_pred C
Q 011201 467 I 467 (491)
Q Consensus 467 ~ 467 (491)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.41 E-value=0.77 Score=42.31 Aligned_cols=295 Identities=13% Similarity=0.096 Sum_probs=186.6
Q ss_pred HHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCChhhHHH-
Q 011201 156 IFHFAVNAFVK--ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV--KCREFDKALGFYDRMVRDRVKPDVVTFNI- 230 (491)
Q Consensus 156 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~- 230 (491)
-|..|-.++.. .|+-..|.++-.+..+.. .-|....-.|+.+.. -.|+++.|.+-|+.|.. |..+--.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence 34455445444 577777877776665432 344444444554433 35999999999999986 4444333
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCChh--hHHHHHHH
Q 011201 231 ---LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-CEFSSV--TCEILVDG 304 (491)
Q Consensus 231 ---li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~ 304 (491)
|.-..-+.|+.+.|.+.-+..-..... -...+...+...|..|+++.|+++++.-++.. +.++.. .-..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 333345678888888888877665332 35678899999999999999999999776543 333321 12233322
Q ss_pred HH---hcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 305 LC---NEGRVLKACELVIDFSRRGVLPKDF-DYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 305 ~~---~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
-. -..+...|...-.+..+. .|+.. .-..-..++.+.|++.++-.+++.+.+....|++. ..|.+...
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~ 307 (531)
T COG3898 236 KAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARS 307 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcC
Confidence 11 123455555554444332 33321 12234567889999999999999999987665542 23333333
Q ss_pred hHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 011201 381 GVEASGLMEKMLKE-GILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR-ENRRKEGENL 457 (491)
Q Consensus 381 ~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~ 457 (491)
.+.+..-+++..+. .++|| ......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-.++...
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHH
Confidence 34455544444332 35555 556666777777889988887766655553 6888888888776544 4999999999
Q ss_pred HHHHHHCCCCC
Q 011201 458 VNEMLDEGFIP 468 (491)
Q Consensus 458 ~~~m~~~~~~p 468 (491)
+-+.++..-.|
T Consensus 386 lAqav~APrdP 396 (531)
T COG3898 386 LAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCCCCC
Confidence 99888764444
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.39 E-value=0.59 Score=40.68 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
+..-|.+.|.+..|..-+++|++. ..-+ ...+-.+..+|...|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445677788888888888888776 2222 334555666777777777777765555443
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=96.35 E-value=0.18 Score=40.69 Aligned_cols=87 Identities=13% Similarity=-0.056 Sum_probs=48.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
+...|++++|..+|.-+...+.. |..-|..|..++-..+++++|+..|......+. -|...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34556666666666665554433 444455555556566666666666665544432 2334444455556666666666
Q ss_pred HHHHHHHHh
Q 011201 315 CELVIDFSR 323 (491)
Q Consensus 315 ~~~~~~~~~ 323 (491)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.033 Score=38.54 Aligned_cols=54 Identities=19% Similarity=0.041 Sum_probs=27.1
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555544332 444444445555555555555555555554
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.024 Score=39.27 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
.|.+.+++++|+++++.+.+.. +.+...|.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455555555555555555542 234444555555555555555555555555543
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.21 E-value=0.044 Score=47.71 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------ChhHHH
Q 011201 187 RPSVSIYNVLINGFVKC-----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK----------------KFDLAL 245 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------~~~~A~ 245 (491)
+.|-.+|-+.+..+... +.++-....++.|.+-|++-|..+|+.|++.+-|.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555555555555432 456666667777878888888888888877654432 234577
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKF-DEGVNMAYEM 286 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m 286 (491)
+++++|...|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888888777653 3334444444
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.016 Score=40.78 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
++..+..+|...|++++|++++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.03 E-value=0.44 Score=46.70 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH----------
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV---------- 365 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---------- 365 (491)
.+...+...+.+...+..|-++|..|-. ...+++.....+++++|..+-+...+.- +|+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcccc--ccccchHHHHhhh
Confidence 3344444444455566666677766532 3445666677777777777766554421 111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 366 -IACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 366 -~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.-|...-.+|.+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1122223445566666666666666544
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.13 Score=44.96 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS- 189 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 189 (491)
.|+..+..+ ++|++..|...|...+...... +-...++..|..++...|++++|..+|..+.+..+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s--------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNS--------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC--------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 455554433 4555777777776666654321 122355666677777777777777777666665433332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..++--|..+..+.|+.++|...|+++.++
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 355556666666666777777777666654
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.92 E-value=0.25 Score=47.78 Aligned_cols=160 Identities=14% Similarity=0.022 Sum_probs=97.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
.....-.|+++++.+....-.-... -| ..-.+.++..+.+.|..+.|+++...-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 4555667888887666642111101 12 4457888888888898888888765432 23455667888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
++.|.++.++.. +...|..|.....+.|+++-|++.|++... +..|+-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 888887765432 677888888888888888888888887532 45566677778888777777766
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
...+|- ++....++...|++++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666542 44455555556777766666554
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.89 E-value=0.33 Score=46.89 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=105.9
Q ss_pred HHHHHhcCChhHHHHHHH--HHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 116 VRSLASSYRFSELHSVLN--FISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
.+...-.++++++..+++ .+... -| ......++.-+-+.|..+.|+.+-..-.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~-----------i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------ 322 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN-----------IP--KDQGQSIARFLEKKGYPELALQFVTDPD------------ 322 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG---------------HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc-----------CC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------
Confidence 344455678888766664 11110 01 3446777888888999999988743322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
.-.+...+.|+++.|.++.++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.
T Consensus 323 -~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~ 386 (443)
T PF04053_consen 323 -HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST 386 (443)
T ss_dssp -HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC
T ss_pred -HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh
Confidence 3366678899999999886554 2778999999999999999999999997664 56777788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
|+.+...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 387 g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999888888877776652 45556666677888888777654
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.87 E-value=1.3 Score=40.09 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=69.2
Q ss_pred HHcCChhHHHHHHHHHHHhc-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCh----
Q 011201 165 VKANRMNDGLLAFEAMRKLI-DGRPSV------SIYNVLINGFVKCREFDKALGFYDRMVRD--------RVKPDV---- 225 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~p~~---- 225 (491)
.+.|+++.|..++.++.... ...|+. ..||.-...+.+..+++.|..++++..+- ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999887753 223332 23444444443333777777766654332 112222
Q ss_pred -hhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 226 -VTFNILISGFCRNKKFD---LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 226 -~~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.++..++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24455666666665543 455555555443222 2444445555555567777777777777665
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=2.8 Score=42.19 Aligned_cols=307 Identities=9% Similarity=0.090 Sum_probs=176.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE--FDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
.++..+...+.+..|+++-..+..... ....+|.....-+.+..+ -+++.+.+++=.+... -...+|..+..-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 457888888999999998877754211 125667777777777632 2334443333222222 34557777787778
Q ss_pred hcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----------CCCChhhHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCN----PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-----------CEFSSVTCEIL 301 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~~~~~~~~~l 301 (491)
.+|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+...- .......|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 899999998887643222111 122234555666777888887777766665431 01111222222
Q ss_pred HH--------HHHhcCCHHHHHHHH--HHHH----hCCCCCCHhhHHHHHHHHHcCCCHhHHH----------HHHHHHH
Q 011201 302 VD--------GLCNEGRVLKACELV--IDFS----RRGVLPKDFDYFGLVEKLCGEGNAGIAL----------EVVDELW 357 (491)
Q Consensus 302 l~--------~~~~~g~~~~a~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~----------~~~~~m~ 357 (491)
++ .+.+.++-.++...| +... ..+..|+ .....+.+.+.....-.. ++.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 21 011111111111111 1100 0122222 233344444443322111 1122222
Q ss_pred H-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 011201 358 K-KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGM 436 (491)
Q Consensus 358 ~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 436 (491)
. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+..+ .+.
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPI 745 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPI 745 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCC
Confidence 1 2323344456666777788899889888876653 4688888888888999999988777644322 256
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
-|.-.+.+|.+.|+.+||.+++.+.- |.. -...+|.+.|++.+|.
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAA 790 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHH
Confidence 77888899999999999999988773 221 5677888888888774
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.57 E-value=0.12 Score=45.20 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------CHHHHHHH
Q 011201 224 DVVTFNILISGFCR-----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER----------------KFDEGVNM 282 (491)
Q Consensus 224 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~~~ 282 (491)
|-.+|-..+..+.. .+.++-....++.|.+.|++-|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44445444444432 3556666667888999999999999999998765442 33467888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 011201 283 AYEMIELGCEFSSVTCEILVDGLCNEGRV-LKACELVIDF 321 (491)
Q Consensus 283 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 321 (491)
+++|...|+-||..+-..+++++.+.+-. .+..++.-.|
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 99999999999999999999998877653 2333333333
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=1 Score=36.53 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh-hHHHH--HHHHHhcCC
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVV-TFNIL--ISGFCRNKK 240 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~~~ 240 (491)
+.+.++.++|+..|..+.+.+-..--+-..-.........|+...|...|+++-.....|-.. -..-| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677777777777777652211112222233445566677777777777776543333322 11111 122445666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
++......+.+...|-..-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666665554443333444455555666667777777777666543
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.52 E-value=0.27 Score=46.60 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV----VTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999998876 4453 35899999999999999999999999885
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.52 E-value=4.2 Score=43.31 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 011201 187 RPSVSIYNVLINGFVKCR--EFDKALGFYDRMVR 218 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~ 218 (491)
.|+ .-.-.+|..|++.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345 44556778888877 67777777777654
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=1 Score=35.87 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=4.5
Q ss_pred CCHHHHHHHHH
Q 011201 449 NRRKEGENLVN 459 (491)
Q Consensus 449 g~~~~A~~~~~ 459 (491)
++++.|.++++
T Consensus 110 ~d~~~a~~~~~ 120 (140)
T smart00299 110 GNYEKAIEYFV 120 (140)
T ss_pred cCHHHHHHHHH
Confidence 34444444443
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=0.43 Score=48.23 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI----NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
...-+..+.+...++-|+.+-+.- ..+......+. +.+.+.|++++|...|-+-... ++| ..+|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 344455556666666655543221 12222222222 3334456666666655543321 111 1244
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.-|.+..++.+-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5555555566666666666666665 55555666666666666665555444432 2211 011234444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
+|..+-..... +...... .+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55444333222 1111222 223445666666666554
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.37 E-value=1.2 Score=40.61 Aligned_cols=156 Identities=11% Similarity=0.052 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcC
Q 011201 201 VKCREFDKALGFYDRMVRD--RVKPDVVTFNILISGFCRNKKFDLALGLFREMREK--GCNPN---VVSFNTLIRGFFGE 273 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~ 273 (491)
....+.++|+..+..-..+ ...---.+|..+..+.++.|.+++++..--.-.+. ..+-. -..|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667776666655442 01111234555666666666666554432211111 00100 12233333333333
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHcCC
Q 011201 274 RKFDEGVNMAYEMIEL-GCEFS---SVTCEILVDGLCNEGRVLKACELVIDFSRRG-----VLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g 344 (491)
-++.+++.+-..-... |..+. -....++..+....+.++++++.|+...+.. ......+|..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3344444333332221 11111 1122234444555555666666665544321 1122344555555566666
Q ss_pred CHhHHHHHHHHH
Q 011201 345 NAGIALEVVDEL 356 (491)
Q Consensus 345 ~~~~a~~~~~~m 356 (491)
|+++|.-+..+.
T Consensus 177 D~~Kal~f~~kA 188 (518)
T KOG1941|consen 177 DYEKALFFPCKA 188 (518)
T ss_pred hhhHHhhhhHhH
Confidence 666655544443
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.36 E-value=1.1 Score=35.67 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=17.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
++..+.+.+.......+++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33333334444444444444444332 233444444444443
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.18 E-value=2 Score=37.54 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
+-.-+..-.+.|++++|.+.|+.+.......| ...+.-.++.++.+.+++++|+..+++....-..-...-|-.-|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33444555688999999999999987643222 34555666778888899999999999887763332233344445554
Q ss_pred H
Q 011201 236 C 236 (491)
Q Consensus 236 ~ 236 (491)
+
T Consensus 117 s 117 (254)
T COG4105 117 S 117 (254)
T ss_pred H
Confidence 4
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.67 Score=43.00 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=73.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.-.+.|.+.|++..|...|+++....... +.-+.++...... .-..+++.|..+|.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYR--------------RSFDEEEQKKAEA--------LKLACHLNLAACYLKL 270 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhcc--------------ccCCHHHHHHHHH--------HHHHHhhHHHHHHHhh
Confidence 34567888899999988888866542210 0011111111111 0123455566666666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHH
Q 011201 239 KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV-LKACEL 317 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~ 317 (491)
+++..|++.-++....+.. |+-....-..+|...|+++.|...|+++++.... |..+-+.++..-.+.... +...++
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655332 5555555556666666667776666666654322 333333333333333332 233455
Q ss_pred HHHHHh
Q 011201 318 VIDFSR 323 (491)
Q Consensus 318 ~~~~~~ 323 (491)
|..|..
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 555543
No 245
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.08 E-value=3.5 Score=43.85 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCCCCHH
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA-NRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
..-++.+...+++.+|..+.++-.- ..+ +........|..-+.++.+. ++.+--..++..+... + -+..
T Consensus 681 La~vr~~l~~~~y~~AF~~~RkhRi---dln----ii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~e-D--vtk~ 750 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKHRI---DLN----IIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEE-D--VTKT 750 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---Ccc----chhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccc-h--hhhh
Confidence 4445666677778877766654322 111 11111134455555565553 3344333333333321 0 1111
Q ss_pred HHHHHH----HHHHhc----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 011201 192 IYNVLI----NGFVKC----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--KFDLALGLFREMRE 253 (491)
Q Consensus 192 ~~~~li----~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~ 253 (491)
.|.... ..|... +.+....+.+.....+ ..|+ .....+|..|.+.+ .+++|+....+...
T Consensus 751 ~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 751 MYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hccccccccceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 111110 111111 2233334444433333 2345 44456788888887 77888877777764
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.05 E-value=2.9 Score=38.75 Aligned_cols=307 Identities=14% Similarity=0.062 Sum_probs=189.1
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHH-HHHHHHcC
Q 011201 92 DFHIFAWASTIDSFRHDHTTFLFIVRSLASS--YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFA-VNAFVKAN 168 (491)
Q Consensus 92 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 168 (491)
+.+.|+...+.++ |..|-..+... |+-..|..+-.+....- + .+.+...+.| .++-.-.|
T Consensus 72 ~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~ll---------s-sDqepLIhlLeAQaal~eG 134 (531)
T COG3898 72 ARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLL---------S-SDQEPLIHLLEAQAALLEG 134 (531)
T ss_pred HHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhh---------h-ccchHHHHHHHHHHHHhcC
Confidence 4455555555443 45555555444 66666766655443211 0 0111222222 34455689
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSI--YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
+++.|.+-|+.|... |.... ...|.-.-.+.|..+.|.+.-++....-.. -...+...+...|..|+|+.|++
T Consensus 135 ~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 135 DYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred chHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 999999999999862 43332 333444445678899998888876654221 34578889999999999999999
Q ss_pred HHHHHHHc-CCCCCHHH--HHHHHHHHH---cCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHH
Q 011201 247 LFREMREK-GCNPNVVS--FNTLIRGFF---GERKFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 247 ~~~~m~~~-g~~p~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~ 319 (491)
+++.-... -+.+++.- -..|+.+-. -..+...|...-.+..+ +.||..-- .....++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 99987654 23444332 222332221 12334455555444443 34443322 234578899999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIAL-EVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP 398 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 398 (491)
.+-+....|+.. .+..+.+.|+..... +-.+.+..... .+..+...+..+-...|++..|..--+.... ..|
T Consensus 288 ~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~p 360 (531)
T COG3898 288 TAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAP 360 (531)
T ss_pred HHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCc
Confidence 999988777643 334456667643221 11122222211 1566666777788888999888777766665 578
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC
Q 011201 399 DSVTFNCLLEDLC-DVGRTVDADRLRLLASTK 429 (491)
Q Consensus 399 ~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 429 (491)
....|..+.+.-. ..|+-.++...+.+..+.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888888887544 449999999988887765
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=0.72 Score=40.52 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKMLKEG--ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK-GLDP-DGMTYHILV 442 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p-~~~~~~~li 442 (491)
.|+.-+..+ +.|++.+|...|...++.. -.-....+-.|..++...|++++|..+|..+.+. +-.| -...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 3445555555555555541 0111223334555555555555555555554442 1111 123444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 011201 443 SGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555555556666655555543
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.89 E-value=2.8 Score=41.21 Aligned_cols=161 Identities=16% Similarity=0.030 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-----hhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHH
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRG-VLPKD-----FDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIAC 368 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-----~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 368 (491)
..+++...=.||-+.+++.+.+..+.+ +.... ..|..++..++. ..+.+.|.++++.+..+- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 344455555667777776666654432 22111 123344443333 345677888888887753 455555
Q ss_pred HHHH-HHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 011201 369 TTLI-EGLRRLRKGVEASGLMEKMLKEG---ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS- 443 (491)
Q Consensus 369 ~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~- 443 (491)
...- +.+...|+.++|++.|++..... -+.....+--+...+.-.+++++|.+.+..+.+.. ......|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4332 34556788888888888655321 11223344455556677788888888888877643 234444444433
Q ss_pred HHHhcCCH-------HHHHHHHHHHH
Q 011201 444 GYTRENRR-------KEGENLVNEML 462 (491)
Q Consensus 444 ~~~~~g~~-------~~A~~~~~~m~ 462 (491)
++...|+. ++|.++|++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34456766 77777777664
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.78 E-value=2.4 Score=36.54 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
+....+...+...............+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555443210012456666677777777777777777766542 122344455555566666666777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHH
Q 011201 247 LFREMREKGCNPNVVSFNTLIR-GFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~ 288 (491)
.+.........+ ......... .+...|+++.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777666543332 112222222 55666666666666666643
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.67 E-value=1.4 Score=34.73 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
+-.-.....+.|++++|++.|+.+.......+ ...+.-.|+.+|.+.+++++|...++++++....---.-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33445556688999999999999998753322 35566778899999999999999999998875443334565556665
Q ss_pred Hhc
Q 011201 236 CRN 238 (491)
Q Consensus 236 ~~~ 238 (491)
+.-
T Consensus 93 ~~~ 95 (142)
T PF13512_consen 93 SYY 95 (142)
T ss_pred HHH
Confidence 443
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.65 E-value=4.4 Score=38.98 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 335 GLVEKLCGEGNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 335 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
.+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445556666666666665543221 12234445555666666666666665554
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.59 E-value=1 Score=35.54 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGV--LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
+.|++++|.+.|+.+..+-. .-.......++.+|.+.|++++|...+++.++..+.-..+-|...+.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 44555555555555554421 1122334455555556666666666666655544333333344444443
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.58 E-value=1.1 Score=40.86 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=140.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HhhCC-CCCChhhHHHHHHHH
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLID-GRPSVSIYNVLINGFVKCREFDKALGFYDR----MVRDR-VKPDVVTFNILISGF 235 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~-~~p~~~~~~~li~~~ 235 (491)
.-+....+.++|+..+.+...... ......+|..+..+.++.|.+++++..--. ..+.. -..--..|-.+.+++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888999988887655321 122345678888888999988887654322 22210 000112344444555
Q ss_pred HhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREK-GCNP---NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-----CEFSSVTCEILVDGLC 306 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~ 306 (491)
-+.-++.+++.+-..-... |..+ --....++..++...+.++++++.|+...+.. ......+|..+-..|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 5545555555544433322 3222 11233456677888889999999999876532 1223467889999999
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCCHhhH-----HHHHHHHHcCCCHhHHHHHHHHHHH----cCCCC-CHHHHHHHH
Q 011201 307 NEGRVLKACELVIDFSR----RGVLPKDFDY-----FGLVEKLCGEGNAGIALEVVDELWK----KGNLP-SVIACTTLI 372 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li 372 (491)
+..|+++|.-+.....+ .++.--..-| ..|.-++...|++..|.+.-++..+ .|-.+ .......+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999887765543 2333111222 2344566677888888888877654 34111 123334566
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011201 373 EGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+.|...|+.+.|+.-|++...
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 677888888888887776654
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.47 E-value=2.9 Score=36.04 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011201 204 REFDKALGFYDRMVRDRVK-PDVVTFNILISGFCRNKKFDLALGLFREMREK-GCNPNVVSFNTLIRGFFGERKFDEGVN 281 (491)
Q Consensus 204 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 281 (491)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555554443221 12345555555666666666666666655542 122234445555555555566666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 011201 282 MAYEMIELGCEFSSVTCEILVD-GLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~ 322 (491)
.+.......... ......... .+...|+++.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666655433222 111111122 4455555555555555553
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=3.7 Score=36.68 Aligned_cols=141 Identities=19% Similarity=0.126 Sum_probs=70.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE 383 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 383 (491)
.....|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777777777766655433 2334556666777777777777777766543221112222222333444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcC
Q 011201 384 ASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLAST--KGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 384 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~p~~~~~~~li~~~~~~g 449 (491)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+ .|. -|...-..++..+.--|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 4444333333 23 444444555556666666666654333322 222 23444445555554444
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.32 E-value=1.2 Score=34.26 Aligned_cols=90 Identities=20% Similarity=0.039 Sum_probs=60.2
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcC
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE-GILPDSV---TFNCLLEDLCDVG 414 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~---~~~~ll~~~~~~g 414 (491)
++...|+++.|++.|.+....-++ ....||.-..++.-.|+.++|++-+++..+. |-+ +.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456677888888888877765333 5677888888888888888888888777765 322 222 2222223456677
Q ss_pred ChHHHHHHHHHHHHCC
Q 011201 415 RTVDADRLRLLASTKG 430 (491)
Q Consensus 415 ~~~~a~~~~~~~~~~g 430 (491)
+-+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888877777776665
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.32 E-value=5.9 Score=38.99 Aligned_cols=132 Identities=10% Similarity=0.068 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+..++.---...+.+.+..++..++..- |..-..|......=.+.|..+.+.++|++..+ +.+-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-----------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~S 112 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKY-----------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLS 112 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhC-----------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhH
Confidence 344445544444444455556666555432 22223344444445567788888888888777 34566
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 190 VSIYNVLINGFVK-CREFDKALGFYDRMVRD-RVK-PDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 190 ~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..|...+..+.. .|+.+...+.|+..... |.. -....|...|..-...+++.....+++++.+.
T Consensus 113 vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 113 VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6666666654443 46777777777776553 321 24455667777667777888888888887764
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=1.5 Score=39.65 Aligned_cols=155 Identities=7% Similarity=-0.041 Sum_probs=108.5
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH----HHHHHHHHhcC
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF----NILISGFCRNK 239 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~ 239 (491)
.-..|+..+|-..++++.+. .+.|..+++.-=++|.-.|+.+.-...++++... ..+|...| ....-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34568888888999999884 4678888888889999999999999999888654 13344333 33445567899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL---GCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
-+++|++.-++..+.+-. |..+-.++...+--.|++.++.++..+-... +--.-..-|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999887765433 6667777888888899999998887654321 100001112222334556689999999
Q ss_pred HHHHHH
Q 011201 317 LVIDFS 322 (491)
Q Consensus 317 ~~~~~~ 322 (491)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998543
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.27 E-value=6 Score=38.93 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHhcCChhHHHHHHHHH
Q 011201 205 EFDKALGFYDRMVRDRVKPDVVTFNILI-SGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~~~A~~~~~~m 251 (491)
..+.|.++++.+.++ -|+...|...- +.+...|++++|++.|++.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 344455555555443 34444333221 2333445555555555543
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.25 E-value=0.62 Score=41.55 Aligned_cols=76 Identities=8% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCChhhHHHHH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE-----LGCEFSSVTCEILV 302 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll 302 (491)
+..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 334444445555555555555555544333 444555555555555555555555554433 34555544444444
Q ss_pred HH
Q 011201 303 DG 304 (491)
Q Consensus 303 ~~ 304 (491)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=2.1 Score=39.80 Aligned_cols=140 Identities=12% Similarity=-0.030 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
-.+.|.+.|++..|..-|+.....= -|...-+.++...... .-..+++.+..+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-------------hccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 3467788888888888877754320 0011111111111111 124566777788889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHH
Q 011201 381 GVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRK-EGENLV 458 (491)
Q Consensus 381 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~-~A~~~~ 458 (491)
+.+|++...+.++.+ ..|....-.=..+|...|+++.|+..|+++.+. .|+ ...-+.|+.+--+..... ...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888863 346666666677888889999999999988885 444 444444554444444433 447788
Q ss_pred HHHHHC
Q 011201 459 NEMLDE 464 (491)
Q Consensus 459 ~~m~~~ 464 (491)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888643
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.03 E-value=0.84 Score=35.06 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=62.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC--HHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--VSIY 193 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 193 (491)
.-+++..|+.+.|++.|.+.+.. +|....+||.-..++.-.|+.++|++-+++..+..|.+-. ..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-----------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 44567778888888888776543 3555677888888888888888888888887776554311 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
..-...|-..|+.+.|..-|+..-+.|
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 333445666777777777777666554
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=1.4 Score=44.79 Aligned_cols=216 Identities=12% Similarity=0.084 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
.+......+.+.|++++|...+-+.... ..| ..+|.-|....+..+--.+++.+.+.|+. +...-..|+.+|
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncY 441 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCY 441 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHH
Confidence 3344455566789999998777655432 123 23566777778888888899999998876 677778899999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... .......+++ ..+++++|+
T Consensus 442 iKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl 510 (933)
T KOG2114|consen 442 IKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEAL 510 (933)
T ss_pred HHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHH
Confidence 99999998877776554 3322 11134566777777877877766555432 3444444444 678899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCChHHHHHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI-----EGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~ 390 (491)
+.++.+.-....+....|... +. ....++-.+++-+.......++.......+ ....-.+++.....+++.
T Consensus 511 ~yi~slp~~e~l~~l~kyGk~---Ll-~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~ 586 (933)
T KOG2114|consen 511 RYISSLPISELLRTLNKYGKI---LL-EHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLES 586 (933)
T ss_pred HHHhcCCHHHHHHHHHHHHHH---HH-hhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHH
Confidence 998765321111111122211 11 234555555555544432222222222211 222344667777777776
Q ss_pred HHHC
Q 011201 391 MLKE 394 (491)
Q Consensus 391 m~~~ 394 (491)
|.+.
T Consensus 587 ~~E~ 590 (933)
T KOG2114|consen 587 MSEI 590 (933)
T ss_pred HHhc
Confidence 7663
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=4.5 Score=36.16 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
.....|++.+|..+|+......-+ +...--.++.+|...|+.+.|..++..+-
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 455667777777777776665333 34555566677777777777777776654
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.91 E-value=4.8 Score=36.51 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGRVL---KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI 372 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 372 (491)
.++..++.+|...+..+ +|.++++.+...... ...++..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 44556667777666544 444555555433222 2333445556666678888888888888775321 233444444
Q ss_pred HHH---HhcCChHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcCC------hHHHHHHHHHHHH-CCCCCCHHH
Q 011201 373 EGL---RRLRKGVEASGLMEKMLKEGILPDSV-TFN-CLLE---DLCDVGR------TVDADRLRLLAST-KGLDPDGMT 437 (491)
Q Consensus 373 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~-~ll~---~~~~~g~------~~~a~~~~~~~~~-~g~~p~~~~ 437 (491)
..+ ... ....+...+..+....+.|... ... .++. ...+.++ ++....+++.+.+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 332 3345666666665554554443 111 1111 1122111 3334444443322 122223332
Q ss_pred ---HHHH----HHHHHhcCCHHHHHHHHHHHH
Q 011201 438 ---YHIL----VSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 438 ---~~~l----i~~~~~~g~~~~A~~~~~~m~ 462 (491)
..++ ...+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222 234557899999999998543
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.91 E-value=0.22 Score=30.30 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
++..+...|.+.|++++|+++|+++.+.. +.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 45667777777777777777777777753 3445555444
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.67 E-value=6.6 Score=37.30 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=92.2
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH--HH
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG--FC 236 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~ 236 (491)
.+-+.+++.+|.++|.++-+.....|. ....+.++++|.. ++.+.....+..+.+. .| ...|-.+..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 355789999999999999875322222 2335566777765 4566666666666554 22 2334444443 34
Q ss_pred hcCChhHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCCChhhH
Q 011201 237 RNKKFDLALGLFREMREK--GCNP------------NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----CEFSSVTC 298 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~--g~~p------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~ 298 (491)
+.+++++|.+.+..-..+ +..+ |-..=+..+..+...|++.++..+++++...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888776654 3222 22223456778889999999999998887543 34788888
Q ss_pred HHHHHHHHh
Q 011201 299 EILVDGLCN 307 (491)
Q Consensus 299 ~~ll~~~~~ 307 (491)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 886666554
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.59 E-value=0.86 Score=40.66 Aligned_cols=76 Identities=21% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK-----EGILPDSVTFNCLL 407 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll 407 (491)
+..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 455555666666666666666666655433 566666666666666666666666665544 26666665555444
Q ss_pred HH
Q 011201 408 ED 409 (491)
Q Consensus 408 ~~ 409 (491)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.54 E-value=7.5 Score=37.51 Aligned_cols=77 Identities=21% Similarity=0.132 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKMLKEGIL-PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP-DGMTYHILVS 443 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~ 443 (491)
+-..+..++.+.|+.++|++.+++|.+..-. -+......|+.++...+.+.++..++.+..+...+. -..+|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3345667777999999999999999875321 134466788999999999999999998876543322 2455665443
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.40 E-value=6.1 Score=36.06 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCC
Q 011201 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCN--EG----RVLKACELVIDFSRRG 325 (491)
Q Consensus 277 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~ 325 (491)
++.+.+++.|.+.|..-+..+|-+....... .. ...+|..+++.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666666555555443222222 11 2344555666665543
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.30 E-value=0.37 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=6.1
Q ss_pred HHhcCChhHHHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREM 251 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m 251 (491)
|.+.|++++|.++|++.
T Consensus 11 ~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.23 E-value=1.7 Score=36.30 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNPN--VVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445556666666666666666666665533222 2345556666666666666666665554
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.21 E-value=4 Score=33.39 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=9.9
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCC
Q 011201 253 EKGCNPNVVSFNTLIRGFFGERK 275 (491)
Q Consensus 253 ~~g~~p~~~~~~~li~~~~~~g~ 275 (491)
+.|+.|+...+..+|..+.+.|+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.18 E-value=4.8 Score=34.20 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
|.++.+||-+.--+...|+++.|.+.|+...+.. ..-+-...|.-|..| --|++.-|.+-|...-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 6667778888777888888888888888777652 111222223222222 346777777766666554
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.18 E-value=3.8 Score=33.08 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..-.+.++.+++..+++.+.......+...++.. ..+++.|+|.+|..+|+++.+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3344556666666666666655322222333332 3355667777777777776554
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.06 E-value=6.9 Score=35.72 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCC----HHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFG--ERK----FDEGVNMAYEMIELGC---EFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~ 311 (491)
+++.+.+++.|.+.|+.-+..+|-+....... ..+ ...+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888899999998887777664333332 333 4578889999998753 2345566666543 33333
Q ss_pred ----HHHHHHHHHHHhCCCCC
Q 011201 312 ----LKACELVIDFSRRGVLP 328 (491)
Q Consensus 312 ----~~a~~~~~~~~~~~~~~ 328 (491)
+.++++++.+.+.|+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666655543
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.66 E-value=0.31 Score=28.10 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+|+.|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778889999999999999998854
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.53 E-value=4.8 Score=32.53 Aligned_cols=119 Identities=21% Similarity=0.168 Sum_probs=70.9
Q ss_pred HHHHHHHH---HHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 191 SIYNVLIN---GFVKCREFDKALGFYDRMVRDRVKPDVVTFN-ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 191 ~~~~~li~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
.+.+.||. .-.+.++.+++..+++.+.-. .|...... .-...+.+.|+|.+|..+|+++.+.+ |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 33444444 345668999999999988764 34333222 22334678999999999999988764 334444555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+..|....+-..-..+-+++.+.+..|+. ..++..+....+...|..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 55555544434444445556666644433 345555555555555444
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=92.47 E-value=11 Score=36.34 Aligned_cols=161 Identities=6% Similarity=0.043 Sum_probs=88.3
Q ss_pred HHH--HHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc---------CChhHH
Q 011201 110 TTF--LFIVRSLASSY-----RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA---------NRMNDG 173 (491)
Q Consensus 110 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a 173 (491)
..| ...+++..... ..+.|..+|.+..... -..|.....|..+..++... ....+|
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~--------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS--------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc--------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 455 55555555532 3466778888876211 01244455665555444332 234455
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 174 LLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 252 (491)
.+.-++..+.. +-|..+...+..+..-.++++.|..+|++....+ || ..+|......+.-+|+.++|.+.+++..
T Consensus 324 ~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 324 LELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666653 4566666666666666777888888888776643 33 3344444444555778888888877755
Q ss_pred HcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHH
Q 011201 253 EKGCNPNV---VSFNTLIRGFFGERKFDEGVNMAYE 285 (491)
Q Consensus 253 ~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~ 285 (491)
+. .|.. ......+..|+. ..+++++++|.+
T Consensus 400 rL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 400 QL--EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred cc--CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 54 2222 122222334443 334555555544
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=1.3 Score=39.64 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDG--RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
...++..-....+++.++..+-+++..... .++...+ +.+..+. .-+.++++.++..=++-|+-||.++++.+|+.
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~ 144 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDS 144 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHH
Confidence 344455555577889999888888764211 1222222 2333333 34677999999888889999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 011201 235 FCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~ 254 (491)
+.+.+++.+|.++.-.|...
T Consensus 145 flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 145 FLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHhcccHHHHHHHHHHHHHH
Confidence 99999999999998887765
No 281
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.36 E-value=7.3 Score=34.25 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC-
Q 011201 186 GRPSVSIYNVLINGF-VKCREFDKALGFYDRMVRDRVKPDVV---TFNILISGFCRNKKFDLALGLFREMREK---GCN- 257 (491)
Q Consensus 186 ~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~- 257 (491)
..||+..-|..-..- .+...+++|+.-|++..+...+-... ....+|....+.+++++..+.|.+|... .+.
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 356665443322211 23456788888888876643222222 2344567777788888888777777532 111
Q ss_pred -CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---
Q 011201 258 -PNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL-----GCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP--- 328 (491)
Q Consensus 258 -p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--- 328 (491)
-+..+.|.++.--....+.+...++|+.-.+. +-+.--.|-.-+...|...|++.+..+++.++.+..-.-
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 12344566666555555555555555433221 001111233456666777777777777777765442111
Q ss_pred -C-------HhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 011201 329 -K-------DFDYFGLVEKLCGEGNAGIALEVVDELWKK-GNLPSVIACTTLIEGL-----RRLRKGVEASGLM 388 (491)
Q Consensus 329 -~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~ 388 (491)
| ..+|..=|.+|....+-.....++++.... .-.|.+.... .|+-| .+.|++++|..-|
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 1 124555566666666666666666665442 2223443332 23222 3456666655433
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.32 E-value=0.0088 Score=48.14 Aligned_cols=129 Identities=9% Similarity=0.035 Sum_probs=66.6
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 415 (491)
+|..+.+.+..+....+++.+...+...+....+.++..|++.++.++.+++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566667777777777776554556677777777777776666666666511 11222344555555666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 011201 416 TVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKS 486 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 486 (491)
++++..++.++.... . .+..+...+++++|.+++.+. .+...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---~------al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---E------ALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---T------CSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---H------HHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 666555544322211 0 000122333444444333322 3456677777766665543
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.31 E-value=5.4 Score=32.59 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=9.6
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 011201 374 GLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~ 393 (491)
+-.+.|++.+|.++|.++..
T Consensus 176 Aa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccchHHHHHHHHHHHc
Confidence 33444555555555554444
No 284
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=2 Score=42.01 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 3455555544443321 344455555555555555555555443
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.19 E-value=8.3 Score=34.51 Aligned_cols=119 Identities=5% Similarity=-0.046 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 011201 364 SVIACTTLIEGLRR-LR-KGVEASGLMEKMLKE-GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK-GLDPDGMTYH 439 (491)
Q Consensus 364 ~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~ 439 (491)
|..+...++..... .+ ....-.++.+-+... |-.++..+...++..+++.+++.+-.++|+..... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44555555555443 11 222233333333333 45677788888888888888888888888876654 5566888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHh
Q 011201 440 ILVSGYTRENRRKEGENLVNE-----MLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
.+|+.-...|+..-..++.++ +++.|+..+...-..+-+.+.+
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 888888888888766666654 2344566666655555555443
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.17 E-value=5.7 Score=32.54 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=15.0
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 011201 213 YDRMVRDRVKPDVVTFNILISGFCRNKKFD 242 (491)
Q Consensus 213 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 242 (491)
++.+.+.++.|+...|..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444455555555555555555555433
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=91.90 E-value=12 Score=35.89 Aligned_cols=116 Identities=9% Similarity=-0.029 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 241 FDLALGLFREMREK-GCNPN-VVSFNTLIRGFF---------GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 241 ~~~A~~~~~~m~~~-g~~p~-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
.+.|+.+|.+.... .+.|+ ...|..+..++. ...+..+|.++-++..+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45667777776621 23333 233333322221 122334555555555555432 5555555555555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 310 RVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+++.|..+|++....+.. ...+|........-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666666666666554332 122233333333445666666666666444
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=9.8 Score=34.69 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=109.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCH
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRGFFGERKF 276 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~ 276 (491)
-..|++.+|-..++++.+.- +-|...++--=++|.-.|+.+.-...++++... ..+|. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34678888888888887753 447777887778888999999988888888765 22333 2233445566788999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHcCCCHhHHHHHH
Q 011201 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR---GVLPKDFDYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 277 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 353 (491)
++|++.-++..+.+ +.|...-.++...+-..|+..++.++..+-... +...-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888765 336677777888888899999998877653321 11112233445555667779999999999
Q ss_pred HHHH
Q 011201 354 DELW 357 (491)
Q Consensus 354 ~~m~ 357 (491)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8643
No 289
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.77 E-value=17 Score=37.25 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhC
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE-------FDKALGFYDRMVRD 219 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~ 219 (491)
.+|-.|.++|.+++|.++........ ......+-..+..|+...+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~--~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF--QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh--cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 45667889999999999996666543 3444556667777766532 23555556655544
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.62 E-value=2.1 Score=35.66 Aligned_cols=95 Identities=16% Similarity=0.038 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRLRLLASTK---GLDPD----GM 436 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~----~~ 436 (491)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..+|+.....+++..+.....++... |-..+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455566666666777777776666666533322 234455566666666666666665544332 11111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
.|..+ .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2345678888888776654
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.44 E-value=17 Score=36.69 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 203 CREFDKALGFYDRMVR-------DRVKPDVVTFNILISGFCRNK-----KFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
..+.+.|+..|+...+ .| +....+-+..+|.+.. +.+.|+.++.+..+.|.. +....-..+.-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHc
Confidence 3455555555555544 22 2223344444444422 334455555555554432 222222221111
Q ss_pred Hc-CCCHHHHHHHHHHHHHcC
Q 011201 271 FG-ERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 271 ~~-~g~~~~a~~~~~~m~~~~ 290 (491)
.. ..+...|.++|...-+.|
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCccccHHHHHHHHHHHHHcC
Confidence 11 123445555555555554
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.16 E-value=0.55 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDR 215 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~ 215 (491)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.69 E-value=6.6 Score=31.24 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=32.7
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
...++.+++..+++.+.-.....+...++-.. .+...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34677777777777776653223333444333 3566777777777777776653
No 294
>PRK09687 putative lyase; Provisional
Probab=90.69 E-value=13 Score=33.77 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=74.3
Q ss_pred CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 329 KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR-KGVEASGLMEKMLKEGILPDSVTFNCLL 407 (491)
Q Consensus 329 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll 407 (491)
+..+-...+.++++.++ +.+...+-.+.+. ++...-...+.++.+.+ ....+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444455555555555 3344444444432 23344444445554442 23455555555553 24555666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 408 EDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+.++.+. .||..+-...+.+|.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 677776663 4444444444432 2 233566777777774 677777777743 3577766666666643
No 295
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.58 E-value=12 Score=33.46 Aligned_cols=115 Identities=5% Similarity=0.045 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK-C-REFDKALGFYDRMVRD-RVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~-~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
+.+|+.+|+........-.|..+-..|++.... . .....-.++.+-+... |-.++..+...++..+++.+++.+-++
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 445555555221111122355555555555554 1 1223333344433322 345566666666777777777777777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011201 247 LFREMREK-GCNPNVVSFNTLIRGFFGERKFDEGVNMAY 284 (491)
Q Consensus 247 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (491)
+++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77665544 444466667777777777777654444433
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.11 E-value=5.6 Score=29.21 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+. ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455555566666677777777777777777777777777777766542 222335665543
No 297
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.97 E-value=0.55 Score=46.98 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.4
Q ss_pred hHHHHHHHHHhc
Q 011201 297 TCEILVDGLCNE 308 (491)
Q Consensus 297 ~~~~ll~~~~~~ 308 (491)
+|..=|+.+|+.
T Consensus 840 afgF~is~L~kL 851 (1102)
T KOG1924|consen 840 AFGFNISFLCKL 851 (1102)
T ss_pred hhccchHHHHhh
Confidence 333333333333
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.60 E-value=9.1 Score=30.46 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 191 SIYNVLINGF---VKCREFDKALGFYDRMVRDRVK-PDVVTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 191 ~~~~~li~~~---~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
.+.+.||+.. ...++.+++..+++.|.-.... +...++-.. .+...|++++|.++|+++.+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3344444433 3478999999999988654221 233344433 3678999999999999999875
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=13 Score=32.28 Aligned_cols=207 Identities=8% Similarity=0.013 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..|.....+|....++++|...+.+..+.. .-+..-|. ..+.++.|.-+.++|.+. .--+..|+--...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 456667778888888998888777766432 12222121 123345566666666543 1123355666778
Q ss_pred HHhcCChhHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 235 FCRNKKFDLALGLFREMREK--GCNPNV--VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~--g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
|..+|..+.|-..+++.-+. .+.|+. ..|..-+......++...|.++ +..+-..+.+...
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEK 165 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHH
Confidence 88888888887777765432 233332 1222222223333333333333 2333344555555
Q ss_pred HHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChH
Q 011201 311 VLKACELVIDFSR----RGVLPK-DFDYFGLVEKLCGEGNAGIALEVVDELWKKG---NLPSVIACTTLIEGLRRLRKGV 382 (491)
Q Consensus 311 ~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~ 382 (491)
+++|-..+..-.. -.-.++ ...|...|-.|.-..|+..|.+.++.-...+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 5555443332111 000111 1234455555666667777777777744322 1124556666666663 45655
Q ss_pred HHHHHH
Q 011201 383 EASGLM 388 (491)
Q Consensus 383 ~a~~~~ 388 (491)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 554443
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.27 E-value=27 Score=35.39 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHH----HH-HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHc
Q 011201 205 EFDKALGFYDRMVRDRVKPDVVTFNILI----SG-FCRNKKFDLALGLFREMRE-------KGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~li----~~-~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 272 (491)
+...|.++++...+.| +...-..+. .+ +....|.+.|+..|+.+.+ .| +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4455666666665554 222222221 22 4456788888888888766 55 34456666666666
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--cCC
Q 011201 273 ER-----KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN-EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC--GEG 344 (491)
Q Consensus 273 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g 344 (491)
.. +.+.|+.++...-+.|.. +....-..+..... ..+...|.++|....+.|.... .-+.+++.... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A-~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA-IYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCCcCC
Confidence 43 567788888888887743 33332222222222 2457789999988888875531 11222211111 234
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
+.+.|...+++..+.|.. ...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 678888888888888722 21111122222333 66666666655555544
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=4.9 Score=39.53 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=48.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666665554432 445566666666666666666666555432 233444444555544444
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
.+-....+.|.. |.-..+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 444333333321 222233444555555555544
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=5.3 Score=35.93 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
+.++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|..+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt 159 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVT 159 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 333444444444444555555555555555555555544444433
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.80 E-value=24 Score=34.29 Aligned_cols=180 Identities=13% Similarity=0.031 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
..|....-+++..+..+..+.-+..+-.+|..-| -+-..|..++.+|... .-+.-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4566667788888888888888888888888764 3667788888888877 567777888888777664 44444445
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEF-----SSVTCEILVDGLCNEGRVLKACELVIDFSRR-GVLPKDFDYFGLVEKL 340 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 340 (491)
..-|-+ ++.+.+..+|.+....-+.- -...|..+...- ..+.+....+...+.+. |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 544444 77778888887776542220 113444444321 34666677776666543 4433444555566777
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 341 CGEGNAGIALEVVDELWKKGNLPSVIACTTLIEG 374 (491)
Q Consensus 341 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 374 (491)
....++++|++++..+.+..-+ |...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 7888888888888877665432 44444444443
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.74 E-value=5.4 Score=33.60 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 242 DLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL---GCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
+.|.+.|-++...+.--++.....|.. |....+.++++.++.+..+. +-.+|...+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444555544443323333322222 22344555555555544432 2244555555555555555555554
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.83 E-value=1.5 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 435 GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 435 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..+++.|...|...|++++|.+++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888899999999999999888764
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.77 E-value=1.1 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKAL 210 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~ 210 (491)
+-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345666777777777777776664
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.49 E-value=2.2 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
.+|..+..+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34566666677777777777777766654
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.37 E-value=1.1 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..|..+..+|...|++++|++.|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777764
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.35 E-value=38 Score=34.85 Aligned_cols=64 Identities=8% Similarity=-0.079 Sum_probs=37.8
Q ss_pred HhcCChHHHHHHHHHHHHCCC-C-----CCHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 011201 411 CDVGRTVDADRLRLLASTKGL-D-----PDGMTYHILVSG--YTRENRRKEGENLVN--------EMLDEGFIPDLATYN 474 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~-~-----p~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~ 474 (491)
+-.+++..|....+.+.+..- . .....+..++.| +-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456888889988888775321 1 112233333333 334699999999997 444444444444443
No 310
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.08 E-value=23 Score=34.25 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVV--TFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~A~~~~ 248 (491)
.+.+...+..|+.+- .+.+.+.|..|+.. .....+...++.|+.+.+..++
T Consensus 36 ~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 36 ISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred CCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 344455556666543 33333445444332 1123344555666665544444
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.03 E-value=42 Score=35.09 Aligned_cols=225 Identities=14% Similarity=0.003 Sum_probs=122.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC----H---HHHHHHHH-HHHcCCCHHHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPN----V---VSFNTLIR-GFFGERKFDEGVNMAYEMIEL----GCEFSSVTCEILVD 303 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~----~---~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~ 303 (491)
....++++|..+..++...-..|+ . ..|+.+-. .....|+++++.++.+...+. -.......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456789999999888765422222 1 23444432 334578899999888876643 23345566677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhH---HHH--HHHHHcCCCHhH--HHHHHHHHHHc---CC---CCCHHHHHH
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDY---FGL--VEKLCGEGNAGI--ALEVVDELWKK---GN---LPSVIACTT 370 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l--i~~~~~~g~~~~--a~~~~~~m~~~---~~---~~~~~~~~~ 370 (491)
+..-.|++++|..+..+..+..-.-+...+ ..+ ...+...|+... .+..|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999988876655322233222 222 233445664333 23333333221 10 112344555
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 011201 371 LIEGLRRL-RKGVEASGLMEKMLKEGILPDSVTF--NCLLEDLCDVGRTVDADRLRLLASTKGLDP----DGMTYHILVS 443 (491)
Q Consensus 371 li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----~~~~~~~li~ 443 (491)
+..++.+. +...++..-+.-.......|-...+ ..++......|++++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 1122222223322222222222222 366777888999999999888776543333 2222222333
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 011201 444 G--YTRENRRKEGENLVNE 460 (491)
Q Consensus 444 ~--~~~~g~~~~A~~~~~~ 460 (491)
. -...|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2356888887777665
No 312
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=28 Score=36.78 Aligned_cols=26 Identities=8% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56677777777777777777777655
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.88 E-value=6.5 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
++.+-++.+....+.|+.....+.+++|.+.+++..|.++++-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555555666666666666666666666666666665553
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.77 E-value=0.93 Score=25.69 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHcCCCHHHH
Q 011201 260 VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a 279 (491)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.46 E-value=2.7 Score=23.34 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
++..+...+.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666677777777777777776654
No 316
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.45 E-value=8 Score=30.74 Aligned_cols=80 Identities=9% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDG----RPSVSIYNVLINGFVKCRE-FDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
.++.++......+++...+.+++.+...... ..+-..|+.++.+..+... ---+..+|+-|.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455555555555555555555555322100 1233344444444433333 2233444444444444444444444
Q ss_pred HHHHH
Q 011201 231 LISGF 235 (491)
Q Consensus 231 li~~~ 235 (491)
+|.++
T Consensus 121 li~~~ 125 (145)
T PF13762_consen 121 LIKAA 125 (145)
T ss_pred HHHHH
Confidence 44443
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.11 E-value=1.4 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.|..+...|.+.|++++|.+.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777764
No 318
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.58 E-value=9.1 Score=33.95 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN-- 307 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 307 (491)
.=|.++++.|+|.+++...-+--+.--+........-|-.|.+.|....+.++-..-....-.-+...|..+++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 457888888888888877665544322223445556666778888888887777766554323344457777666654
Q ss_pred ---cCCHHHHHHHH
Q 011201 308 ---EGRVLKACELV 318 (491)
Q Consensus 308 ---~g~~~~a~~~~ 318 (491)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888887776
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.43 E-value=9.7 Score=32.13 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcCCHH
Q 011201 436 MTYHILVSGYTRENRRK 452 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~ 452 (491)
..+..|+..|.+.|+++
T Consensus 179 eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 179 EILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHHHhcchh
Confidence 33333333333333333
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.43 E-value=2.3 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
No 321
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=85.40 E-value=1.7 Score=43.72 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCCH
Q 011201 220 RVKPDVVTFNILISGFCRNKKFDLALGLFREMRE---KGCNPNVVSFNTLIRGFFGERKF 276 (491)
Q Consensus 220 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~ 276 (491)
+++|+..+.+....-..+...+..-+++.--+-. .|-+ |..+|.-=|+.+|+..+.
T Consensus 796 niKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSr-Na~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 796 NIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSR-NAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred hcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccc-cchhhccchHHHHhhccc
Confidence 3556655444333333333334333333322211 1222 555555555555555443
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.76 E-value=0.39 Score=38.46 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 370 TLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 370 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
.+|..+.+.+..+....+++.+...+..-+....+.++..|++.+..++..++++ .. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcc
Confidence 3566777788899999999999987666678899999999999988888888775 11 1122345666777778
Q ss_pred CHHHHHHHHHHH
Q 011201 450 RRKEGENLVNEM 461 (491)
Q Consensus 450 ~~~~A~~~~~~m 461 (491)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 887777777765
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.52 E-value=57 Score=34.24 Aligned_cols=225 Identities=11% Similarity=-0.065 Sum_probs=116.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChh-------hHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVV-------TFNILIS-GFCRNKKFDLALGLFREMREK----GCNPNVVSFNTLIR 268 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 268 (491)
....++++|..++.++...-..|+.. .|+.|-. .....|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34578888888888765542222221 3333322 234568888888887776553 23345667777778
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHhcCCHHHHH--HHHHHHHhC-----CC-CCCHhhHHH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV-----DGLCNEGRVLKAC--ELVIDFSRR-----GV-LPKDFDYFG 335 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~--~~~~~~~~~-----~~-~~~~~~~~~ 335 (491)
+..-.|++++|..+..+..+..-..+...+.... ..+...|+...+. ..+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999998888776553333443333222 2344556333322 223222211 10 111233444
Q ss_pred HHHHHHcC-CCHhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 011201 336 LVEKLCGE-GNAGIALEVVDELWKKGNLPSVIAC--TTLIEGLRRLRKGVEASGLMEKMLKEGILP----DSVTFNCLLE 408 (491)
Q Consensus 336 li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~ 408 (491)
+..++.+. +...++..-++--......+-...+ ..|+..+...|+.++|...++++......+ +..+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555441 1122222222222222222222222 256777788899999999888887653222 2222222222
Q ss_pred H--HHhcCChHHHHHHHHH
Q 011201 409 D--LCDVGRTVDADRLRLL 425 (491)
Q Consensus 409 ~--~~~~g~~~~a~~~~~~ 425 (491)
. -...|+..++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2345676666655443
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.47 E-value=9.8 Score=27.66 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
-++.+-++.+......|++....+.+.+|.+.+++.-|.++|+-.+.+ +..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 345555566666666677777777777777777777777777665543 2223334544443
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.44 E-value=7.5 Score=28.57 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 208 KALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666655544
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=54 Score=33.82 Aligned_cols=105 Identities=6% Similarity=0.098 Sum_probs=59.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (491)
++.+.+.+.+++|+...+........ -.........+..+...|++++|-...-.|.. -+..-|.-
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~---------~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~ 428 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER---------FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWEL 428 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc---------cchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHH
Confidence 56667777888887776654332110 01235566777788888888888777666654 35555655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
.+..+...++...... -+.......+...|..++..+..
T Consensus 429 ~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 429 WVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 5555555555433222 22222222345566666666655
No 327
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.09 E-value=97 Score=36.60 Aligned_cols=318 Identities=10% Similarity=-0.034 Sum_probs=160.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
.+..+-.+++.+.+|...++.-..... ........+..+...|...+++|....+...-.. .|+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek--------~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl~-- 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK--------EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSLY-- 1453 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc--------hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccHH--
Confidence 445566677888888888887411110 0111223344555589999999888777664222 23332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHc
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL-IRGFFG 272 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~ 272 (491)
.-|......|+++.|...|+.+.+.+. +...+++-++......|.++.++-..+-.... ..+....|+.+ +.+--+
T Consensus 1454 -~qil~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~ 1530 (2382)
T KOG0890|consen 1454 -QQILEHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWR 1530 (2382)
T ss_pred -HHHHHHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhh
Confidence 344556677999999999999987642 23667887777777778888777766555443 12233333333 344467
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHHhCCCCC---------CHhhHHHHHHH
Q 011201 273 ERKFDEGVNMAYEMIELGCEFSSVTCEIL--VDGLCNE--GRVLKACELVIDFSRRGVLP---------KDFDYFGLVEK 339 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~--g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~ 339 (491)
.++++...+... . . +..+|... .....+. .+.-.-.+.++.+.+.-+.+ =...|..++..
T Consensus 1531 l~qwD~~e~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kL 1603 (2382)
T KOG0890|consen 1531 LSQWDLLESYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKL 1603 (2382)
T ss_pred hcchhhhhhhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHH
Confidence 777777666655 1 1 12222222 2222111 12111112222222211110 01122222222
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHHHHHH-HHHHHCCCCC-----CHHHHHHHH
Q 011201 340 LCGEGNAGIALEVVDELWKKGNLPS------VIACTTLIEGLRRLRKGVEASGLM-EKMLKEGILP-----DSVTFNCLL 407 (491)
Q Consensus 340 ~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p-----~~~~~~~ll 407 (491)
..-.. -....+.. .+..++ ..-|-.-+..-....+..+-+--+ +.+......| -..+|....
T Consensus 1604 H~l~e----l~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1604 HLLLE----LENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHHH----HHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 21110 00001110 111111 111221221111111111111111 1111111122 246788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 408 EDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+...+.|.++.|...+-...+.+ . ...+-....-+...|+...|+.++++.+..
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88778999999988776666654 2 345556677888999999999999988855
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.74 E-value=11 Score=32.24 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD--RVKPDVVTFNILISG 234 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 234 (491)
.+..+..+.+.+++.+++...+.-.+. .+-|......++..||-.|++++|..-++-.-.. ...+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445566677777777777766655543 1335555666777777777777777666554332 122334455555543
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.73 E-value=2.6 Score=23.13 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
-.+..++.+.|++++|++.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556666777777777777777665
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.95 E-value=34 Score=30.54 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=54.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKL-IDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR-- 237 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 237 (491)
|.++++.|++.+++...-+.-+. ...+| .....-|-.|.+.+.+..+.++-....+..-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 78888888888877654443322 11233 33444566688888888888888777664322344456666655543
Q ss_pred ---cCChhHHHHHH
Q 011201 238 ---NKKFDLALGLF 248 (491)
Q Consensus 238 ---~~~~~~A~~~~ 248 (491)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777766
No 331
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.78 E-value=54 Score=32.66 Aligned_cols=351 Identities=11% Similarity=-0.008 Sum_probs=197.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCCC-C
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV-KANRMNDGLLAFEAMRKLIDGR-P 188 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~ 188 (491)
-|......-.+.|..+.+..+|++.+.. .|.....|...+..+. ..|+.+...+.|+......|.. .
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~a-----------ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~ 149 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQA-----------IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFL 149 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchh
Confidence 4566667777788999999999987653 2344455554444333 4677888888999988865543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hc------CChhHHHHHHHHHHHc----C
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC---RN------KKFDLALGLFREMREK----G 255 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~------~~~~~A~~~~~~m~~~----g 255 (491)
+...|-..|..-..++++.....+|++.++. ....|+....-|. +. ...+++.++-.....+ -
T Consensus 150 S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~ 225 (577)
T KOG1258|consen 150 SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITH 225 (577)
T ss_pred ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhccc
Confidence 5667888888888899999999999999874 2223333322222 11 2233333332222210 0
Q ss_pred CCCCHHHHHHHHHHHH-------------------------cCCCHHHHHHHHHHHHHc---CCC----CChhhHHHHHH
Q 011201 256 CNPNVVSFNTLIRGFF-------------------------GERKFDEGVNMAYEMIEL---GCE----FSSVTCEILVD 303 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~-------------------------~~g~~~~a~~~~~~m~~~---~~~----~~~~~~~~ll~ 303 (491)
.......+..-+..-. ......+....++.-++. .+. .+..+|..-+.
T Consensus 226 ~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLd 305 (577)
T KOG1258|consen 226 SQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLD 305 (577)
T ss_pred ccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhh
Confidence 0011111211111111 111111111222222111 111 23466777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCh
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN--LPSVIACTTLIEGLRRLRKG 381 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~ 381 (491)
.-...|+.+.+.-+++...-.--.-+ ..|-..+.-....|+.+-|..++....+--. .|....+.+.+. -..|++
T Consensus 306 f~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~ 382 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNF 382 (577)
T ss_pred hhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccH
Confidence 77888999998888877653211111 1233344444445888888877776655332 233444444443 345799
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHH
Q 011201 382 VEASGLMEKMLKEGILPDSV-TFNCLLEDLCDVGRTVDAD---RLRLLASTKGLDPDGMTYHILVSG-----YTRENRRK 452 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~---~~~~~~~~~g~~p~~~~~~~li~~-----~~~~g~~~ 452 (491)
+.|..+++...+. + |+.. .-..-+....+.|+.+.+. .++....+.. -+......+.-- +.-.++.+
T Consensus 383 ~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 383 DDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred HHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHH
Confidence 9999999999886 3 5432 2223334456778888877 4444333321 222222333222 23357889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
.|..++.+|.+. +.++...|..+++-+...+
T Consensus 459 ~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 999999999865 4566677777777766555
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.87 E-value=5.8 Score=36.11 Aligned_cols=89 Identities=7% Similarity=-0.043 Sum_probs=51.0
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTV 417 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 417 (491)
+-|.+.|.+++|+..|..-...... +.+++..-..+|.+..++..|+.-....+..+- --...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 4577888888888888776554321 667777777778887777777666655554210 01222333333333345555
Q ss_pred HHHHHHHHHHH
Q 011201 418 DADRLRLLAST 428 (491)
Q Consensus 418 ~a~~~~~~~~~ 428 (491)
+|.+=++...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555554444
No 333
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=81.87 E-value=29 Score=28.99 Aligned_cols=25 Identities=16% Similarity=-0.058 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
-...|.....+.+.|.+|.|..+++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445555666667777777776665
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.75 E-value=37 Score=30.08 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=126.3
Q ss_pred CCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHc---CC
Q 011201 219 DRVKPDVVTFNILISG-FCRNKKFDLALGLFREMREKGCNPNVV---SFNTLIRGFFGERKFDEGVNMAYEMIEL---GC 291 (491)
Q Consensus 219 ~~~~p~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~ 291 (491)
.+-+||+..=|.--.. -.+..+.++|+.-|++..+..-+-... +...+|..+.+.|++++.++.|.+|... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456676544322211 124458899999999988763322333 3445788999999999999999988632 11
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-
Q 011201 292 --EFSSVTCEILVDGLCNEGRVLKACELVIDFSRR-----GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP- 363 (491)
Q Consensus 292 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 363 (491)
..+....|.++.......+.+...++++.-++. +-..--.|-+.|...|...|++.+..++++++...--.-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234566778887777666666666665543221 111122234567788888888888888888887642111
Q ss_pred ---C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCChHHHHH
Q 011201 364 ---S-------VIACTTLIEGLRRLRKGVEASGLMEKMLKE-GILPDSVTFNCLLE----DLCDVGRTVDADR 421 (491)
Q Consensus 364 ---~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~----~~~~~g~~~~a~~ 421 (491)
| ...|..-|..|....+-.+...+|++.+.- .--|.+.....+-. ...+.|.+++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 1 356777778888888877878888776543 23455555444332 1334577777653
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.43 E-value=12 Score=31.98 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK--GCNPNVVSFNTLIRGF 270 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~ 270 (491)
.+.-++.+.+.+++.+|+...++-++.... |..+-..+++.+|-.|++++|..-++-.-+. ...+-..+|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 455677888999999999999887776433 6777888999999999999999887766544 2334567888888876
Q ss_pred H
Q 011201 271 F 271 (491)
Q Consensus 271 ~ 271 (491)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
No 336
>PRK09687 putative lyase; Provisional
Probab=81.38 E-value=42 Score=30.46 Aligned_cols=234 Identities=11% Similarity=-0.038 Sum_probs=140.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF----DLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+|....-..+..+...|. +++...+..+... +|...-...+.++...|+. +++..++..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 566666667777776665 3444444444432 3566666667777777763 4677777776443 3455666
Q ss_pred HHHHHHHHcCCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 264 NTLIRGFFGERKF-----DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 264 ~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
...+.++...+.. ..+.+.+..... .++..+-...+.++++.++ +.+...+-.+.+. ++..+-..-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666554321 233333333332 2355666777788888876 4566666666553 34445556666
Q ss_pred HHHcCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 011201 339 KLCGEG-NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTV 417 (491)
Q Consensus 339 ~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 417 (491)
++.+.+ +...+...+..+... ++..+-...+.++.+.|+ ..++..+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 244566666666543 367777788888888887 46666666666643 2 234667777888885
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 418 DADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 418 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
+|...+..+.+. .+|..+-...+.++.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777764 246666555555543
No 337
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.72 E-value=50 Score=30.93 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
...+.-+.|+|+...+........ .++...|..+... +.++++++....+++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356677888888866665554432 2344455544443 778888888888776653
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.52 E-value=5.4 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777788888888888888888764
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.46 E-value=4.3 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=77 Score=32.77 Aligned_cols=151 Identities=10% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRP---SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
-++.+.+.+.+++|+++-+..... .+ -...+...|+.+.-.|++++|-...-.|... +..-|...+..+.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA 434 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc
Confidence 467788899999998887765542 34 3566888899999999999999999999865 6677777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH--------------HH---HcCCCCChhhHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYE--------------MI---ELGCEFSSVTCE 299 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~--------------m~---~~~~~~~~~~~~ 299 (491)
..++......+ +.......+...|..++..+.. .+...-.++..+ .. +.. .-+...-.
T Consensus 435 e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e 509 (846)
T KOG2066|consen 435 ELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLE 509 (846)
T ss_pred cccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHH
Confidence 76665543332 2222122345566666666655 222211111111 00 000 01223334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011201 300 ILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.|+..|...+++++|.+++-...
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 57778888888888887765443
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.04 E-value=35 Score=28.72 Aligned_cols=89 Identities=7% Similarity=-0.004 Sum_probs=61.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN-----CLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
...+...|++++|+.-++..... +....+. .|.+.....|.+|+|...++...+.++. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 45577888888888888877653 2333333 3444667788899998888776665432 233344457788
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 011201 447 RENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~~ 465 (491)
..|+-++|..-|++.+..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8899999999999888775
No 342
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.59 E-value=1.4e+02 Score=35.42 Aligned_cols=154 Identities=11% Similarity=0.054 Sum_probs=98.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDG-RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
.+..+-.+++.+.+|+..++.-...... .-....|..+...|..-+++|...-+...-.. +.. ...-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 4455666788899999999884211000 12233455556699999999988888774211 222 2334455678
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
.|+++.|...|+.+.+.+.. ...+++.++......|.++.+....+-.....-.-...-++.=+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 89999999999999987432 36678888888778888888777555554432111112233334444677788777766
Q ss_pred HH
Q 011201 318 VI 319 (491)
Q Consensus 318 ~~ 319 (491)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 65
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.42 E-value=20 Score=34.50 Aligned_cols=122 Identities=12% Similarity=0.001 Sum_probs=72.7
Q ss_pred HHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 011201 305 LCNEGRVLKACELVIDFS-RRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE 383 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 383 (491)
-...|++-.|-+-+...+ ...-.|+.....+. .....|+++.+.+.+...... +.....+..+++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334567666655444443 33334444333333 345567888887777655432 22245667777777778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 384 ASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 384 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
|..+-.-|....++ +...........-..|-+|++...|+......
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888777776555 44444333333455677788887777776553
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.33 E-value=6.2 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
.++..+...|.+.|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34666777777777788777777777664
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.17 E-value=33 Score=28.97 Aligned_cols=90 Identities=17% Similarity=0.026 Sum_probs=54.8
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPS----VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCD 412 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 412 (491)
+-+.+.|++++|..-|....+.-.... .+.|..-..++.+.+.++.|+.-..+.++. .|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 346677888888888777776533221 233444445667777777777777777663 332 1122222336677
Q ss_pred cCChHHHHHHHHHHHHC
Q 011201 413 VGRTVDADRLRLLASTK 429 (491)
Q Consensus 413 ~g~~~~a~~~~~~~~~~ 429 (491)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77777777777777765
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.93 E-value=68 Score=31.43 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=48.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011201 224 DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVD 303 (491)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 303 (491)
|....-+++..+..+..+.-+..+-.+|..-|- +...|..++.+|.+. .-++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 444555555656555555556666666655432 455556666666555 334455555655554432 2222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 011201 304 GLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~ 323 (491)
.|-+ ++.+.+...|..+..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 555555555555443
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=45 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHH
Q 011201 439 HILVSGYTRENRRKEGENLVNEM----LDEGFIPDLAT 472 (491)
Q Consensus 439 ~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~ 472 (491)
..+|..+.+.|++.+|+.+.+.+ ++.+-+|+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 45788899999999999876544 44444555443
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.00 E-value=4.3 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 011201 439 HILVSGYTRENRRKEGENLVN 459 (491)
Q Consensus 439 ~~li~~~~~~g~~~~A~~~~~ 459 (491)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666654
No 349
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.20 E-value=58 Score=29.65 Aligned_cols=151 Identities=14% Similarity=0.098 Sum_probs=81.4
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR---- 237 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 237 (491)
..+.+..+...+....... +......+...|.. ..+..+|.++|..+.+.|. ......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 3455666666666665531 22334444444443 3457888888887777653 3333334444444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER-------KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN--- 307 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 307 (491)
..+..+|...|++..+.|..+-..+...+-..|...+ +...|...|.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3478888888888888876533222333433333321 2235666666666655 33333333333322
Q ss_pred -cCCHHHHHHHHHHHHhCCC
Q 011201 308 -EGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 308 -~g~~~~a~~~~~~~~~~~~ 326 (491)
..+.++|..+|....+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 2355666666666655554
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.45 E-value=41 Score=28.43 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
.++.+.+.++.|++-..+.++.+.. .......-..+|-+...++.|+.=+..+.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3444445555555444444444321 1111111223444444445555444444443
No 351
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.16 E-value=5.5 Score=21.77 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 440 ILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566777888999999999888754
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.91 E-value=45 Score=27.72 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=10.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 419 ADRLRLLASTKGLDPDGMTYHILVSGY 445 (491)
Q Consensus 419 a~~~~~~~~~~g~~p~~~~~~~li~~~ 445 (491)
|...|+...+. .|+..+|+.-+...
T Consensus 99 A~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 99 ATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 33334444332 45666666555443
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.81 E-value=61 Score=29.24 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 206 FDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
..+|+++|.-+.+..- ...+-+.++..+....+..+|...+.
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHH
Confidence 4577777777766421 23344455666666666666555544
No 354
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.81 E-value=51 Score=28.33 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
..||.|.-.+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34555555555666666666666655554
No 355
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.71 E-value=63 Score=29.32 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 011201 260 VVSFNTLIRGFFGERKFDEGV 280 (491)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a~ 280 (491)
.-+|.-|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 445778888888888776543
No 356
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=75.57 E-value=79 Score=30.39 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTKGLD--PDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.|+.-|...|++.+|.+..+++ |++ .....+.+++.+.-+.|+-...+.++++.-+.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445555556666665554332 221 13445666666666666655556655555433
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.39 E-value=1e+02 Score=31.71 Aligned_cols=132 Identities=11% Similarity=0.194 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHH-HHHHHHcCChhHHHHHHHHHHHhcC--CCCC
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFA-VNAFVKANRMNDGLLAFEAMRKLID--GRPS 189 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 189 (491)
..+++.+.+.+... |...+++.++.-.. +........|..+ +..+...++...|++.++.+..... ..+.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSET------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhc------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 35566666665544 88888887654321 1112233455555 4444445899999999998877643 2344
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCC---------CCChhhHHHHHHHH--HhcCChhHHHHHHHHH
Q 011201 190 VSIYNVLINGFVK--CREFDKALGFYDRMVRDRV---------KPDVVTFNILISGF--CRNKKFDLALGLFREM 251 (491)
Q Consensus 190 ~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~---------~p~~~~~~~li~~~--~~~~~~~~A~~~~~~m 251 (491)
+.++-.++.+... .+..+++.+.++++..... .|-..+|..+++.+ ...|+++.+.+.++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555556655543 4556777777776633211 23455666666654 4567777776666655
No 358
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.24 E-value=67 Score=29.45 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 011201 299 EILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
......||+.||.+.|++.+..
T Consensus 108 ~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 3344445555555555554443
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.52 E-value=12 Score=26.13 Aligned_cols=47 Identities=15% Similarity=-0.048 Sum_probs=27.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 011201 412 DVGRTVDADRLRLLASTKGLDPD--GMTYHILVSGYTRENRRKEGENLV 458 (491)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 458 (491)
.....++|+..|....+.-..+. -.++..++.+|+..|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665432221 234556667777777777666654
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.10 E-value=27 Score=33.64 Aligned_cols=117 Identities=10% Similarity=0.107 Sum_probs=58.7
Q ss_pred hcCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 011201 202 KCREFDKALG-FYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGV 280 (491)
Q Consensus 202 ~~~~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 280 (491)
..|+...|-+ +++.+....-.|+.......| +...|+++.+.+.+...... +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455544433 333333332233433332222 33456666666666544332 2224455666666666667777776
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 281 NMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 281 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
..-..|....++ +..+........-..|-++++.-.|+++.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 666666655544 33333333333344555666666665554
No 361
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=74.09 E-value=84 Score=30.05 Aligned_cols=185 Identities=10% Similarity=0.080 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChh-----HHHHHHHHHHHcCCCCCHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDR--VKPDVVTFNILISGFCRNKKFD-----LALGLFREMREKGCNPNVVS 262 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~-----~A~~~~~~m~~~g~~p~~~~ 262 (491)
...|+.+.+.=-++.--+...++.+.|.... -.|-+.-..++|..||+..+.+ .-+.+++.+....+ |-..+
T Consensus 55 l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~ 133 (669)
T KOG3636|consen 55 LDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PRSDE 133 (669)
T ss_pred hhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-Ccchh
Confidence 3456665555444444555666666664321 1222224556777788776543 34455555554433 24444
Q ss_pred HHHHH---HH-----HHcCCCHHHHHHHHHH---------HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 263 FNTLI---RG-----FFGERKFDEGVNMAYE---------MIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 263 ~~~li---~~-----~~~~g~~~~a~~~~~~---------m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
||..- .- |...|+.-...+++-+ +....+.||..+.+.+...++..-..+-...+|+-..+.+
T Consensus 134 fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 134 FNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred hhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44332 22 2334444443333322 2334678898888888888888888888888888877775
Q ss_pred CCCCHhhHHHHH---HH-----HHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 326 VLPKDFDYFGLV---EK-----LCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 326 ~~~~~~~~~~li---~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 376 (491)
-+.-++ +.++| ++ -.+...-++++++++.|...=..-|+.-+-.|...|+
T Consensus 214 DPF~vf-fLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 214 DPFLVF-FLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred CceehH-HHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 432222 22222 11 1234456788888888876422235666666666654
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.87 E-value=69 Score=28.93 Aligned_cols=72 Identities=11% Similarity=0.002 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD-----EGFIPDLATY 473 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 473 (491)
.+++.....|..+|.+.+|.++.+...... +.+...|-.++..|...|+--.|.+-++++.+ .|+..|..++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345666778889999999999988887764 45778888999999999997777777777653 2776665554
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.75 E-value=7.8 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=9.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~ 287 (491)
..+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 364
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=77 Score=29.08 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCCh----h
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREK----GCNPNVVSFNTLIRG-FFGERKFDEGVNMAYEMIELGCEFSS----V 296 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~----~ 296 (491)
..+-.....||+.||.+.|++.+.+..++ |.+.|++.+.+-+.. |....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34556677899999999999888776544 777777665544433 33333345566666667777765544 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+|..+- +....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 333332 22346788888888766543
No 365
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.78 E-value=17 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 446 TRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666777766666666666665554
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.16 E-value=59 Score=27.42 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=38.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-----HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 198 NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI-----LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
..+..+|++++|..-++..... +....+.. |.+.....|.+|+|+.+++.....++. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3445556666666555544432 11222222 223344455555555555554443221 1112222344555
Q ss_pred CCCHHHHHHHHHHHHHc
Q 011201 273 ERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~~ 289 (491)
.|+-++|..-|++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
No 367
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=71.76 E-value=41 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
++..+.+.++..+..+.+..+. ....-...+..+...|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444455555555555543 233344455566666777777776666544
No 368
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.53 E-value=69 Score=27.94 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011201 298 CEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRR 377 (491)
Q Consensus 298 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 377 (491)
....++.|.+.-++.-|-...+.+.+ | ...-.++ --|.+..+..-..++.+-....++.-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 34456666666666655554444322 2 2222222 23555555555555555555566665666666555 566
Q ss_pred cCChHHHHHHHHHHHHC-CC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 378 LRKGVEASGLMEKMLKE-GI-----------LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGY 445 (491)
Q Consensus 378 ~g~~~~a~~~~~~m~~~-~~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 445 (491)
.|+..+|+.-++.-... |. .|.......++.. |..+++++|.+++.++-+.|+.|.. ..+.+.+.+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 79999988888765543 21 4666667777776 4568899999999999999987643 344444444
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.11 E-value=30 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=15.4
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKG 381 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 381 (491)
.|+.+.|.++++.+. +| ...|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 344555555555544 32 23344444444444443
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.04 E-value=9.8 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.|..+...+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566667777777777777776653
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.80 E-value=40 Score=24.09 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. +|.. .|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 3455555555532 22222222222224466666666666666 5433 266666666666654444
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.67 E-value=1.7e+02 Score=31.32 Aligned_cols=115 Identities=11% Similarity=-0.006 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC--CC-CCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHcCCCCChhhHH---
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKG--CN-PNVVSFNTLIRGFFGERKF--DEGVNMAYEMIELGCEFSSVTCE--- 299 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~-p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~--- 299 (491)
|..|+..|...|+.++|+++|.+..+.. .. --...+..++.-+.+.+.- +-.+++-+...+....-...++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6667777777777777777777766531 00 0112223344444444433 44444443333321111111110
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 300 ---------ILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 300 ---------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
..+-.|......+.+..+++.+....-..+....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223455556666677777766655444455555555555553
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.16 E-value=20 Score=24.96 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=29.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
...+.++|+..|+...+.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777766533222 24566777777777777776665
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.96 E-value=28 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 186 GRPSVSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 186 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
..|+..+|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666666666666666666666666655543
No 375
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=1.8e+02 Score=31.20 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g 484 (491)
|..++..-..-+...|++-.|++++.++++. |-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3344444444444556666666666555542 34455555555444444333
No 376
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=67.89 E-value=1.1e+02 Score=28.68 Aligned_cols=194 Identities=11% Similarity=0.060 Sum_probs=99.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---CCHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR---PSVS 191 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 191 (491)
...+.-+.|+++............. + ...+...+.++ ..|+++++...+++........ ....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~-----------~--~~~~~~al~~l-~~~~~~~~~~~i~~~r~~~~~~l~~~~~~ 69 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS-----------P--EYSFYRALLAL-RQGDYDEAKKYIEKARQLLLDELSALSSE 69 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC-----------h--hHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566777788887555544432211 0 12233333333 7888998888888776542111 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-----cCChhHHHHHH---HHHHH--cCCCCCHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR-----NKKFDLALGLF---REMRE--KGCNPNVV 261 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-----~~~~~~A~~~~---~~m~~--~g~~p~~~ 261 (491)
.|......+.+...+.+..++.+-..... .+......++..+.+ .++++.-..++ ..+.. ........
T Consensus 70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~ 147 (352)
T PF02259_consen 70 SYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAE 147 (352)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHH
Confidence 33333334444333333333333221110 011122222222111 11222111111 11111 11223556
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGCEF---SSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+|..++..+.+.|.++.|...+..+.+.+... +..+...-.+..-..|+.++|...++...+.
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888899999999999999999887754221 2344444556667788989999988887763
No 377
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=67.66 E-value=82 Score=27.28 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---ChhhH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP---DVVTF--NILISGFCRNKKFDLALGLFREMREKGCNPNVV 261 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~--~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 261 (491)
.....-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-|....+.|++++|++...++...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 45666677777666666666666666654 344544 33333 345666778888888888877765443443443
Q ss_pred HHHHHHH----HHHcCCCHHHHHHHHHH
Q 011201 262 SFNTLIR----GFFGERKFDEGVNMAYE 285 (491)
Q Consensus 262 ~~~~li~----~~~~~g~~~~a~~~~~~ 285 (491)
.+-.|.. -..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333222 23455555555555543
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.53 E-value=1.6e+02 Score=30.46 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-------hhHHHHHHHHHHHc
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK-------FDLALGLFREMREK 254 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~ 254 (491)
...| .+|-.|.++|++++|.++..+... ........+...+..|+...+ -+....-|++..+.
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3445 467778899999999999855543 334455667777777766532 23455555555544
No 379
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=1.2e+02 Score=28.70 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=84.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH----cCChhHHHHHHH
Q 011201 103 DSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK----ANRMNDGLLAFE 178 (491)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 178 (491)
.+...+..++..+++.|...++|+..-+.+..+...... ...+...++.-+.. ..+.+.-+.+.+
T Consensus 46 ~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-----------lk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 46 SDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-----------LKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 345556667888888888888887765555444332211 01112222221111 122233333333
Q ss_pred HHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH------------HHHHHhcCCh
Q 011201 179 AMRKLIDGR-----PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNIL------------ISGFCRNKKF 241 (491)
Q Consensus 179 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l------------i~~~~~~~~~ 241 (491)
.++..-..+ --...-..|...+-.+|++++|..++.+. -+.||.++ ++.|.-.+|+
T Consensus 115 tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el-------~VETygsm~~~ekV~fiLEQmrKOG~~~D~ 187 (439)
T KOG1498|consen 115 TLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCEL-------QVETYGSMEKSEKVAFILEQMRLCLLRLDY 187 (439)
T ss_pred HHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------chhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Confidence 333211111 01122234455666778888888887665 34455443 4455666677
Q ss_pred hHHHHHHHHHHHcCCC-CCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 242 DLALGLFREMREKGCN-PNV-----VSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~-p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
-.|.-+-+++..+-+. ||. .-|+.++......+.+-.+.+.|+.....|
T Consensus 188 vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 188 VRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 6666665555544332 222 135555555555566656656655554443
No 380
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=66.16 E-value=79 Score=26.56 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNE 460 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 460 (491)
.-...|.-...+.+.|.+|.|+.++++
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345667777889999999999999884
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.13 E-value=18 Score=23.93 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
|..---.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334456777777777777777777665
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.87 E-value=40 Score=34.02 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRD--RVKPDVVTFNILISGFCRNKKFD------LALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~------~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
+|+.+|..+|++-.+.++++.+... |-+.=...||.-|+...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988764 32333456788888888888764 3444444433 34477888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~ 288 (491)
+.+-..--+-...+-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776654444444445555443
No 383
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=65.36 E-value=83 Score=26.49 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
++...-.....|++++|.+-++++.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555666777777777766543
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.16 E-value=25 Score=21.81 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEI 300 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ 300 (491)
|-.+++..++++|.+.|+..+...|..
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 333344444444444444444333333
No 385
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.16 E-value=50 Score=23.85 Aligned_cols=55 Identities=11% Similarity=0.017 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE 205 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 205 (491)
|.+...-..+...+...|++++|++.+-.+.+.....-+...-..|+..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3334444455556666666666666555555432222233344444444444443
No 386
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.78 E-value=54 Score=24.18 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
..+...|++++|..+.+.+ ..||...|.+|-. .+.|..+++..-+.+|..+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444555566555555443 3455555554432 2445555555555555444
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.55 E-value=1.3e+02 Score=28.51 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHc-------CCC-----CCCC---CCcccCCchHHHHHHH---HHHHHHcCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISA-------NPC-----PCSN---DGIFSCPEMERIFHFA---VNAFVKANR 169 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-----~~~~---~~~~~~~~~~~~~~~l---~~~~~~~~~ 169 (491)
...++..+...+.+.|+...|.+++++.+- ... .... .--+..+.+...|-.+ |..+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 455788888899999999888888776631 111 0000 0002234444444444 666777777
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV-KCREFDKALGFYDRMVR 218 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~ 218 (491)
+..|+++-+-+.... ..-|....-.+|+.|+ ++++++--+++++....
T Consensus 119 ~rTAlE~~KlLlsLd-p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLD-PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcC-CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 888877777777663 1224444555565554 55667666776666543
No 388
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.52 E-value=1.5e+02 Score=29.14 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=55.9
Q ss_pred CCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHC-CCCCCHHH
Q 011201 397 LPDSVTF-NCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR--ENRRKEGENLVNEMLDE-GFIPDLAT 472 (491)
Q Consensus 397 ~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~-~~~p~~~~ 472 (491)
.++..|+ +.+++.+.+.|...+|..++..+... .+++...|..+|..=.. .-+...+.+.|+.|... | -|...
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3454444 45666667778888888888877775 25677777777653221 22377778888887754 5 56677
Q ss_pred HHHHHHHHHhcCCcc
Q 011201 473 YNSYMDGLSNARKSV 487 (491)
Q Consensus 473 ~~~ll~~~~~~g~~~ 487 (491)
|.-.+.--...|..+
T Consensus 533 w~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHHhhccCCCcc
Confidence 766666555555544
No 389
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.38 E-value=97 Score=28.64 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHcCCCHhHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 011201 339 KLCGEGNAGIALEVVDELWKK---GNLPSVIACT--TLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
..-+.++.++|+++++++.+. .-.|+.+.|. .+...+...|+..++.+++++..+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333445666666666665542 1223333332 233344455666666666555544
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.95 E-value=71 Score=32.52 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 378 LRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 378 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
.|++.+|.+.+-.+.+.+..|...-...|.+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 3666667666666666666665554444443
No 391
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=63.85 E-value=2.1e+02 Score=30.66 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST-KGLDPDGMTYHILVSGYTRENRRKEGENLVNE 460 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 460 (491)
+.-.+.|.++.+---.-|..++..-...+...|++-.|.+++.++.+ .|-.++...|..++..+...|-- --..+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 33444444444431122444454445555566667777666655544 44455666666666665555533 33344444
Q ss_pred HH
Q 011201 461 ML 462 (491)
Q Consensus 461 m~ 462 (491)
+.
T Consensus 1292 ~~ 1293 (1304)
T KOG1114|consen 1292 WM 1293 (1304)
T ss_pred he
Confidence 43
No 392
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.40 E-value=1.3e+02 Score=28.13 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID 185 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (491)
.|+..+.-.++.-+....+-+....+-..+ ....+.+..++.+.+.....+++..+......
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f------------------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~ 133 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIF------------------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQ 133 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHH------------------HHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Confidence 466666666666666665543332222111 23455666677777776665555554443211
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hC-CCCCChhhHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 011201 186 GRP--SVSIYNVLINGFVKCREFDKALGFYDRMV-RD-RVKPDVVTFNILIS------GFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 186 ~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~-~~~p~~~~~~~li~------~~~~~~~~~~A~~~~~~m~~ 253 (491)
..+ =....-.++..+.+.+++.-++..++.-. +. +-.|....-..|.. .|...++++.|+-+|....-
T Consensus 134 ~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 134 PSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred cCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 111 12233445666667777666655544311 11 11111111011111 13456788888888887664
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.48 E-value=1.5e+02 Score=28.57 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 011201 195 VLINGFVKCREFDKALGFYD 214 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~ 214 (491)
+.+...++.|+.+.+..+++
T Consensus 70 t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 70 SELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred cHHHHHHHCCCHHHHHHHHH
Confidence 34555566677666555443
No 394
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.15 E-value=88 Score=26.06 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC----C-------HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 170 MNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCR----E-------FDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~----~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
+++|+.-|++.... .|+ ..++..+..+|...+ + +++|.+.|+.... ..|+...|+.-+....
T Consensus 51 iedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH-
Confidence 45556666666665 344 466667777666543 2 3444444444433 3567777766666542
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 011201 238 NKKFDLALGLFREMREKGC 256 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~ 256 (491)
+|-++..++.+.+.
T Consensus 125 -----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 -----KAPELHMEIHKQGL 138 (186)
T ss_dssp -----THHHHHHHHHHSSS
T ss_pred -----hhHHHHHHHHHHHh
Confidence 35555555555543
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.57 E-value=82 Score=25.17 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRV-----KPDVVTFNILISGFCRNKK-FDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
.|.++.-....+++.....+++.+..-.. ..+..+|++++.+..+... ---+..+|.-|.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56666666666666666666665522100 1133345555555544333 23344455555554455555555555
Q ss_pred HHHHHcC
Q 011201 267 IRGFFGE 273 (491)
Q Consensus 267 i~~~~~~ 273 (491)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5554443
No 396
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.50 E-value=29 Score=22.94 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
.-.-.+|.+|...|++++|.+.++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333455666666666666666655543
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.17 E-value=75 Score=24.60 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
+..+-++.+..-++.|+......-+++|.+.+++..|.++++-++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 56666667777788899999999999999999999999998887765 233344565544
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.02 E-value=62 Score=25.89 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
+.+.|++.+.. -..+++.+...++.-.|.++++++.+.+...+..|-..-+..+...|
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444443322 33344444444444555555555555444443333333333333333
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.74 E-value=1.3e+02 Score=27.19 Aligned_cols=171 Identities=12% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHcCCCHh
Q 011201 277 DEGVNMAYEMIELG--------CEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG-VLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 277 ~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 347 (491)
+..-.+|..+-+.| +..|..-++.++. -+..++++-.+-+++..+.+ -.--...+..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHH
Q 011201 348 IALEVVDELWK----KGNLPSVIACTTLIEG-LRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED--LCDVGRTVDAD 420 (491)
Q Consensus 348 ~a~~~~~~m~~----~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~ 420 (491)
.+.+..++..+ .|.+.|+....+-+.. |....-.++.++..+.|+++|...+...--..-.+ +....++.+|.
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 421 RLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 421 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
.++......--......|...+.--.-.|
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHhh
No 400
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.61 E-value=60 Score=29.93 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=33.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
+-|.++|.+++|+..|..-.... ..+.+++..-..+|.+...+..|+.-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 34777777777777777655432 126666766677777777776665544443
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.34 E-value=74 Score=26.53 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 381 GVEASGLMEKMLKEGILPD--SVTF-----NCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE 448 (491)
Q Consensus 381 ~~~a~~~~~~m~~~~~~p~--~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 448 (491)
.+.|+.+|+.+.+.--.|. ...- ...+..|.+.|.+++|.++++...+. |+.......+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 4567777766665522221 1111 12223566667777777776666552 3444444444444443
No 402
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.82 E-value=2.2e+02 Score=29.56 Aligned_cols=253 Identities=10% Similarity=-0.005 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
-...+..+.+.+++....+++.. ...+...-.....+....|+.++|.+...++-..|.. .....+.++..+.+
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~ 175 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHH
Confidence 34445555667777766663311 1234444455666677778777776666666555443 45566677777665
Q ss_pred CCCHHHHH--HHHHHHHHcCCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 273 ERKFDEGV--NMAYEMIELGCEFSSVTCEILVDGLCN------------EGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 273 ~g~~~~a~--~~~~~m~~~~~~~~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
.|.+.... +-++.+...| +...-..+...+.. ..+...+...+. .+.++...-..++.
T Consensus 176 ~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~ 247 (644)
T PRK11619 176 SGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAV 247 (644)
T ss_pred cCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHH
Confidence 55543321 1222222222 11111222211100 001111111111 01112211111111
Q ss_pred HH--HcCCCHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 339 KL--CGEGNAGIALEVVDELWKKG-NLPS--VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDV 413 (491)
Q Consensus 339 ~~--~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 413 (491)
++ ....+.+.|..++....... ..+. ...+..+.......+...++...+....... .+......-+......
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHc
Confidence 11 12345677777777764432 1111 2233344333333332556666665543321 2333344444444577
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 414 GRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 414 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
++++.+...+..|....- -...-.-=+..++...|+.++|...|+++.
T Consensus 326 ~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777776644221 122222234556566788888888887764
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.78 E-value=28 Score=22.16 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 442 VSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYM 477 (491)
Q Consensus 442 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 477 (491)
.-++.+.|++++|.+..+.+++ ++|+..-...|-
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 3455666666666666666663 355555444443
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.62 E-value=1.8e+02 Score=28.51 Aligned_cols=106 Identities=15% Similarity=-0.001 Sum_probs=60.8
Q ss_pred HHhcCChHHHHHHHHHHHH---CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCC-----
Q 011201 375 LRRLRKGVEASGLMEKMLK---EGILPDS-----VTFNCLLEDLCDVGRTVDADRLRLLAST-------KGLDPD----- 434 (491)
Q Consensus 375 ~~~~g~~~~a~~~~~~m~~---~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~g~~p~----- 434 (491)
+.-+|++.+|.+++...-- .|...+. ..+|.+...+.+.|.+..+..+|..... .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3456777777777643211 1222221 1224444444555666666555555442 354442
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 435 ------GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 435 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
..+||+= -.|...|+.-.|.+-|.+.... +.-+...|-.+..+|.-
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2345543 3566778888888888887754 56677888888888753
No 405
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.51 E-value=69 Score=23.66 Aligned_cols=50 Identities=22% Similarity=0.124 Sum_probs=23.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 410 LCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
+.+.|++++|..+.+.. ..||.+.|-.|-. .+.|..+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44555555555544322 2455555544422 34455555555555554443
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.49 E-value=20 Score=32.40 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=22.7
Q ss_pred CChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 223 PDVVT-FNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 223 p~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
||..+ |+..|....+.||+++|+++++|.++.|+.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44443 3566666667777777777777777666653
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.36 E-value=54 Score=27.72 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444445555555444444443
No 408
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.31 E-value=2.4e+02 Score=29.73 Aligned_cols=340 Identities=9% Similarity=0.007 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHH---HHcCChhHHHHHHHHHHHhc
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAF---VKANRMNDGLLAFEAMRKLI 184 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~ 184 (491)
+...+..||..+.+.|++++...--..|.... |..+..|..-+... ...+...++..+|++.....
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----------pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----------PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY 180 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence 44567889999999999988777666666542 22234444443332 23467777888888777543
Q ss_pred CCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHhhC-CCCCC--hhhHHH---HHHHHHhcCChhHHHHHHHHH
Q 011201 185 DGRPSVSIYNVLINGFVK-------CREFDKALGFYDRMVRD-RVKPD--VVTFNI---LISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 185 ~~~~~~~~~~~li~~~~~-------~~~~~~A~~~~~~m~~~-~~~p~--~~~~~~---li~~~~~~~~~~~A~~~~~~m 251 (491)
-++..|.-.+..+.. .++++....+|.+.... |...+ ...|.. +=..|..+-..+....+|..-
T Consensus 181 ---~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~e 257 (881)
T KOG0128|consen 181 ---NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRE 257 (881)
T ss_pred ---ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555544444433 35677777888776553 32222 112222 222333344445566666655
Q ss_pred HHcCCCCCHHHHHHHHHHHHcC-------CCHHHHHHH-------HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 252 REKGCNPNVVSFNTLIRGFFGE-------RKFDEGVNM-------AYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 252 ~~~g~~p~~~~~~~li~~~~~~-------g~~~~a~~~-------~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
...++ |..+-+.=..-..+. ...+.+.+- +++..+. ..+-...|...++.+.+.|+.-....+
T Consensus 258 l~~~~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~ 334 (881)
T KOG0128|consen 258 LKQPL--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLI 334 (881)
T ss_pred Hhccc--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 55442 222211111111111 122222221 2222221 122234566667777777776555555
Q ss_pred HHHHHhCC-CCCCH-------------------hhHH--------------HHHHHHHcCCC-HhHHHHHHHHHHHcCCC
Q 011201 318 VIDFSRRG-VLPKD-------------------FDYF--------------GLVEKLCGEGN-AGIALEVVDELWKKGNL 362 (491)
Q Consensus 318 ~~~~~~~~-~~~~~-------------------~~~~--------------~li~~~~~~g~-~~~a~~~~~~m~~~~~~ 362 (491)
++++.... ..++. ..+. .-+.++.+.+. .......|..-...+
T Consensus 335 ~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~-- 412 (881)
T KOG0128|consen 335 EERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT-- 412 (881)
T ss_pred HHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH--
Confidence 54443211 11110 1111 11111111111 111111111111111
Q ss_pred CCHHHHHHHHHHHHhcC-------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 011201 363 PSVIACTTLIEGLRRLR-------------KGVEASGLMEKMLKEGILPDSVTFNCLLEDL-CDVGRTVDADRLRLLAST 428 (491)
Q Consensus 363 ~~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~ 428 (491)
...++.......+.+ .+..|...|.+.......+...+........ .-.++.+.+..+|+.+..
T Consensus 413 --~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 413 --VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred --HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 111121111111222 2334555554444332222233333333322 345789999999998887
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011201 429 KGLDPDGM-TYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 429 ~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
.|.. +.. .|...++.=...|+...+..+++.....-..|+
T Consensus 491 y~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 491 YGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred CCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 7643 444 666666666677888888888888776655554
No 409
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.58 E-value=59 Score=29.53 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----------cCCHHHH
Q 011201 245 LGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN----------EGRVLKA 314 (491)
Q Consensus 245 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------~g~~~~a 314 (491)
.++++.|.+.++.|.-.+|.-+.-.+.+.=.+.+++.+|+.+.... .-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3566666666777776666666666666666677777777665432 224444444442 4666666
Q ss_pred HHHHHH
Q 011201 315 CELVID 320 (491)
Q Consensus 315 ~~~~~~ 320 (491)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666643
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.67 E-value=74 Score=23.07 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011201 119 LASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI 197 (491)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 197 (491)
..+.+++..|.+.+.............. .......+.-.+.......|+.++|+..+++..+.....-|....+..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~--~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSS--SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3466888888777666654322111000 0001122333445666778888888888887766533334444444333
No 411
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.35 E-value=3e+02 Score=30.09 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAM 180 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~ 180 (491)
.-..++.+...+++.+|..+.++-
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHh
Confidence 345577788899999987776554
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.00 E-value=82 Score=31.97 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHcCCCHh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 300 ILVDGLCNEGRVLKACELVIDFSRR--GVLPKDFDYFGLVEKLCGEGNAG------IALEVVDELWKKGNLPSVIACTTL 371 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 371 (491)
.++.+|...|++..+.++++.+... |-+.-...||..|+...+.|.++ .|.+.+++..-.| |..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Confidence 7888999999999999998887754 33333456788888888888754 3444444444333 77788777
Q ss_pred HHHHHh
Q 011201 372 IEGLRR 377 (491)
Q Consensus 372 i~~~~~ 377 (491)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.48 E-value=1.9e+02 Score=27.56 Aligned_cols=179 Identities=14% Similarity=-0.021 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc---------CCCCCH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRR--GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK---------GNLPSV 365 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~ 365 (491)
.+.-+...|...|+++.|++.+...... ..+-....|..+|..-.-.|+|.....+..+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGIL------PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYH 439 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 439 (491)
..+..+...+.+ ++..|.+.|-......+. |...+.-..+.+++--++-+--..+.....-..+---..-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 011201 440 ILVSGYTRENRRKEGENLVNEMLDE-----GFIPDLATYNSYMD 478 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~ 478 (491)
.+|..|+. +++...+++++++... -+.|...+.-.+|+
T Consensus 310 ~il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.01 E-value=83 Score=28.62 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 412 (491)
.++++.+.+.++.|...++.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 355666666666666666665555566666666666666666552 2225555555553
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.43 E-value=28 Score=31.48 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=24.0
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 011201 397 LPDSVT-FNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTY 438 (491)
Q Consensus 397 ~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 438 (491)
.||..+ |+.-|+...+.||+++|+.++++..+.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344433 346666666666666666666666666654333333
No 416
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.23 E-value=74 Score=25.47 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=25.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 250 EMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 250 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
.+.+.|++++. --..++..+.+.++.-.|.++++++.+.+...+..|.-..++.+..
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 33444444332 2234444444444445555555555555544443333333333333
No 417
>PRK09857 putative transposase; Provisional
Probab=53.19 E-value=1.8e+02 Score=26.58 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011201 404 NCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 404 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
..++.-....++.++..++++.+.+. ........-++..-+.+.|.-+++.++..+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444334455555555565555544 222233333455556666666778888888888877654
No 418
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.38 E-value=1.6e+02 Score=25.61 Aligned_cols=21 Identities=14% Similarity=-0.051 Sum_probs=10.7
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 011201 372 IEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~ 392 (491)
|......|+.++|++...++.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 344455555555555555443
No 419
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.22 E-value=1.6e+02 Score=25.75 Aligned_cols=239 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSI----YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
+.-.+++++|.++|.+.-..+....+... |--....+.+.|.-++|-..|-++-. |.+.+
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~----------------cykk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN----------------CYKKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH----------------Hhhcc
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
+.++|...++..++. |...|++..|-+....+-+. ...+..-+...|..|-+.+++-+..+.-.
T Consensus 88 ~~~eAv~cL~~aieI---------------yt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEI---------------YTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred ChHHHHHHHHHHHHH---------------HHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhh
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHH------HHHHHHhcCChHHHHHHHHHHHH
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTT------LIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
...+- +..+...-...+++.+|+++|+++....+..+..-|.. -.-++.-..+.-.+...+++..+
T Consensus 152 sANKC--------~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 152 SANKC--------LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred hHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
........-=..++.-++..-+-.....+-+...+..--.....|.+-|
T Consensus 224 ~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~tti 272 (288)
T KOG1586|consen 224 LDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTI 272 (288)
T ss_pred cCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHH
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.95 E-value=19 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=16.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
.|.-..|..+|.+|.+.|-.||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34445566666666666655543 4455443
No 421
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.79 E-value=3e+02 Score=28.70 Aligned_cols=96 Identities=16% Similarity=0.223 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CC
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS----------IYNVLINGFVKCREFDKALGFYDRMVRD--RV 221 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~ 221 (491)
..+...++-.|....+++..+++.+.+++. ||.. .|...++---+-|+-++|+...-.|.+. .+
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 355666777777777777777777777764 3221 1222233223346677777766666553 34
Q ss_pred CCChhhHHH-------HHHHHHhcCChhHHHHHHHHHHH
Q 011201 222 KPDVVTFNI-------LISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 222 ~p~~~~~~~-------li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
.||...... +-..|...+..+.|.+.|++..+
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 566543211 11234444556666677766554
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.77 E-value=2.4e+02 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=21.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 378 LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVG 414 (491)
Q Consensus 378 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 414 (491)
.++.+.|+.++..|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3566667777777777666665544444444444433
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.66 E-value=16 Score=28.44 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 446 TRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
...|.-.+|..+|++|++.|-.|| .|+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344666678888888888887776 466666654
No 424
>PRK10941 hypothetical protein; Provisional
Probab=51.43 E-value=1.9e+02 Score=26.14 Aligned_cols=80 Identities=14% Similarity=-0.004 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR-VKPDVVTFNILIS 233 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~ 233 (491)
...+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 456778888999999999999999998874 3455556666777899999999999888887653 3455555555555
Q ss_pred HHH
Q 011201 234 GFC 236 (491)
Q Consensus 234 ~~~ 236 (491)
...
T Consensus 260 ~l~ 262 (269)
T PRK10941 260 SIE 262 (269)
T ss_pred HHh
Confidence 544
No 425
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.17 E-value=2.3e+02 Score=29.59 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 346 AGIALEVVDELW-KKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 346 ~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
.++..+.+..+. ..|+..+......++... .|+...++.+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 344455554443 356666777676666544 58888888888877653
No 426
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.83 E-value=1.8e+02 Score=25.52 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
....-+..|.+.-++..|....++..+- ..+-.++ --|.+..+.+--.++.+-....++.-+..-..+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 3445567777777777776666665431 2222333 34566666555555665555556665555455544 45
Q ss_pred cCCCHhHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWKK-G-----------NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED 409 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 409 (491)
..||..+|+..++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|... .+.+.++
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 689999999888776542 1 1366777777777664 578999999999999999987654 3444554
No 427
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=49.70 E-value=3.5e+02 Score=28.76 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---C----------CCChhhHHHHHHHHHh
Q 011201 171 NDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR---V----------KPDVVTFNILISGFCR 237 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~----------~p~~~~~~~li~~~~~ 237 (491)
++..+.++++.+..+..-+......+... ..|+...|+.++++....+ + ..|...+..++.. +.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-LA 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-HH
Confidence 34455555555444444455544444332 3577777777766644321 0 1122222333332 23
Q ss_pred cCChhHHHHHHHHHHHcCCC
Q 011201 238 NKKFDLALGLFREMREKGCN 257 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~ 257 (491)
.++..+++.+++++...|+.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 35666666666666665553
No 428
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.51 E-value=3.5e+02 Score=28.79 Aligned_cols=55 Identities=4% Similarity=0.030 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
.+=+.|...|+|+.|.+..+.-.. ....++..-...|.+.+++..|-+++-++.+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~--------------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPD--------------ALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHH--------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 344567777888888777543200 0123444446667777888888888877754
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.14 E-value=2.2e+02 Score=26.42 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=14.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC
Q 011201 409 DLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
.+...|-.+.|..+++.+.+..+
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34556777777777776666543
No 430
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=49.13 E-value=43 Score=27.24 Aligned_cols=30 Identities=3% Similarity=-0.013 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISAN 138 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (491)
......-+....+.++|+.|.++...+...
T Consensus 90 v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 90 VVDKLHQLAQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333334444555668899999988877654
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.02 E-value=91 Score=27.65 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=10.5
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 011201 160 AVNAFVKANRMNDGLLAFEAM 180 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~ 180 (491)
+..-|.+.|++++|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555544
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.99 E-value=90 Score=27.69 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMRE----KGC-NPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+.-++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555666666665555531 122 223334445555556666666555544433
No 433
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.97 E-value=17 Score=38.94 Aligned_cols=29 Identities=41% Similarity=0.883 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011201 10 PILIHNKSPPPPPAPSIPLPSRPETPPVT 38 (491)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (491)
..+.+..+|||||||.--||+.|++||+|
T Consensus 2 a~lppg~ppppppppg~epps~pppPppP 30 (2365)
T COG5178 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPP 30 (2365)
T ss_pred CCCCCCCCcccccCCCCCCCCCCCCccCC
No 434
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.67 E-value=1.5e+02 Score=29.75 Aligned_cols=88 Identities=15% Similarity=-0.002 Sum_probs=58.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 011201 306 CNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 385 (491)
.-.|+...|...+.........-..+....|.+...+.|....|..++.+..... .-.+.++..+..+|....+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457777777777665544333333445566666677777777877777766654 224566667777777788888888
Q ss_pred HHHHHHHHC
Q 011201 386 GLMEKMLKE 394 (491)
Q Consensus 386 ~~~~~m~~~ 394 (491)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 888877765
No 435
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.60 E-value=1.7e+02 Score=26.71 Aligned_cols=53 Identities=8% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
.++..+.+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35555666666666666666665 344455667777888999999988887764
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.53 E-value=2.5e+02 Score=26.89 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVV--TFNILISGFC--RNKKFDLALGLFREMRE 253 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~A~~~~~~m~~ 253 (491)
+.+++..|.++|+.+..+ +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555554 333332 2233333322 23344555555554443
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.38 E-value=1.3e+02 Score=23.39 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 418 DADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 418 ~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
.+.++|..|..+|+... ...|......+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77777877777766543 455666777777778888888877653
No 438
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=47.94 E-value=3.3e+02 Score=28.87 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 346 AGIALEVVDELWK-KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 346 ~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
.++..+.++.+.+ .|+..+......++.. ..|+..+|+.++++....
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 4455566666543 5666666666555543 368888999988876643
No 439
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.85 E-value=1.8e+02 Score=25.08 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=18.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
+.....+.|+.++|.+.|.+++..+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4455667888888888888888664
No 440
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.40 E-value=2.1e+02 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMA 283 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~ 283 (491)
|......+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555666666777777776666544
No 441
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.25 E-value=2.4e+02 Score=26.31 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
..|-+++......|.+++++.+|++++..|-+|=...-..+++.+-
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666655555554444443
No 442
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.21 E-value=1.3e+02 Score=30.23 Aligned_cols=137 Identities=14% Similarity=0.005 Sum_probs=84.9
Q ss_pred CCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 292 EFSSVTCEILVDGLCNE--GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACT 369 (491)
Q Consensus 292 ~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (491)
-|+..+..+++.-.... ..-+.+-.++..|.. ...|--...|.-.-.....|+...|.+.+.........-..+..-
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 45666666555433332 223444455554443 333332233322222345688888888887766543333344445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 370 TLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 370 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.|.....+.|...+|-.++.+..... .-...++..+.+++.-..+++.|++.|+.+.+..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 56666677778888888888777654 3356677788888999999999999999887763
No 443
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.07 E-value=3e+02 Score=27.30 Aligned_cols=100 Identities=7% Similarity=-0.013 Sum_probs=52.0
Q ss_pred hHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 347 GIALEVVDELW-KKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 347 ~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
++..+.++.+. ..|+..+......++. ...|+...|+.++++....+ ....++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 34445555543 3566666776665553 34588888999888765431 0112222221111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011201 426 ASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 426 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
|+ .+...+..++......+....|+.++++|.+.|..|..
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 22 24444445555444444445666666666666655443
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.06 E-value=1.4e+02 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+..+-++.+...++.|++.....-+.++.+-+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555556666666666666666666666666666655443
No 445
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.33 E-value=2.4e+02 Score=25.87 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~ 385 (491)
...|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456777777777777766443
No 446
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.84 E-value=2.3e+02 Score=25.64 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=35.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHcCCCHHHHHHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSF-------NTLIRGFFGERKFDEGVNMA 283 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~ 283 (491)
+.+...+.+++++|+..+.++...|+..|..+. ..+...|...|++...-+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 455667778888888888888888876665443 34555666666665544443
No 447
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.12 E-value=80 Score=20.10 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKEGILPDSV 401 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 401 (491)
+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 33445566666666666666655 345433
No 448
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=44.61 E-value=37 Score=34.70 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=23.2
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHcCC
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSL-ASSYRFSELHSVLNFISANP 139 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~ 139 (491)
+-...+.|....++- ...-.|+.+.+-. .+..++++..+.|....+.+
T Consensus 369 ~~~p~lnW~alKP~q-v~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~ 417 (830)
T KOG1923|consen 369 TKSPSLNWLALKPIQ-VKGTVFHELNDEKILEALDFSRFEEQFKILKSNG 417 (830)
T ss_pred ccCCCccccccCccc-cccchhhhhhHHHHHHhhhHHHHHHHHHhhhccc
Confidence 344556676554431 1113444444432 33356666666666544433
No 449
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.57 E-value=1.2e+02 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011201 441 LVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
+.......|+.++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445566777777777777664
No 450
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.55 E-value=1.3e+02 Score=22.54 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
-|..++.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777777777777777766
No 451
>PRK09857 putative transposase; Provisional
Probab=44.50 E-value=2.5e+02 Score=25.68 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHCCCC
Q 011201 383 EASGLMEKMLKEGIL 397 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~ 397 (491)
++.++..+|...|+.
T Consensus 258 ~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 258 KALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHcCCC
Confidence 344444444444443
No 452
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.92 E-value=1.1e+02 Score=22.91 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFYDRM 216 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m 216 (491)
++.-|...++.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555443
No 453
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.53 E-value=95 Score=20.52 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHHh
Q 011201 203 CREFDKALGFYDRMV 217 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~ 217 (491)
.|++-+|.++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 455555555555543
No 454
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.36 E-value=45 Score=22.34 Aligned_cols=29 Identities=21% Similarity=-0.004 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.++.++..+++..-++++...+..+.+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444433
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.35 E-value=2e+02 Score=25.37 Aligned_cols=163 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF-CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE- 273 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 273 (491)
++..+-..++++++.+.+.++...+...+..-.|.|-.+| ...|....+++++..+.+..-.-.......++..|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------------------------HHHHHHHHHH-HHhCCCC
Q 011201 274 -RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR------------------------VLKACELVID-FSRRGVL 327 (491)
Q Consensus 274 -g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------------------------~~~a~~~~~~-~~~~~~~ 327 (491)
..+..-..-+-.++...+.|....-...+-.+-..|| +++|.++... +......
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
.=....|.-+..|-..|+.++|.++-++..+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 456
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.16 E-value=94 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=16.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
+++.+.+|...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666677777777777776665
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.86 E-value=2.5e+02 Score=25.16 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=18.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELV 318 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~ 318 (491)
|......+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5667777888888888888887665
No 458
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=42.26 E-value=2.8e+02 Score=25.56 Aligned_cols=48 Identities=10% Similarity=-0.194 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
..+-.-..+.|+..|...+..++.. ..|+...|+..++.+-..|-..+
T Consensus 195 ~rL~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccc
Confidence 3333334456666677777666653 34777777777777665444444
No 459
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.24 E-value=1.4e+02 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=7.3
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 011201 268 RGFFGERKFDEGVNMAYE 285 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~ 285 (491)
..|...|+.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444443
No 460
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.19 E-value=1.6e+02 Score=22.82 Aligned_cols=43 Identities=5% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 208 KALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 208 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
.+.++|..|...|+.-. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777766655433 33455556666666777777776654
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.95 E-value=1.6e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=15.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.++.-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334444444544444444444444333333333333
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.80 E-value=1.5e+02 Score=22.29 Aligned_cols=26 Identities=8% Similarity=0.318 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666655
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.57 E-value=1.5e+02 Score=24.42 Aligned_cols=60 Identities=12% Similarity=-0.040 Sum_probs=33.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 251 MREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 251 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
+...|++.+..- ..++..+...++.-.|.++++.+.+.+...+..|.--.|..+.+.|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344566544332 344444444455556777777777766665655555555555555543
No 464
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.24 E-value=2.2e+02 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=13.6
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011201 446 TRENRRKEGENLVNEMLD 463 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~ 463 (491)
.+.|++++|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456888888888887763
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.16 E-value=1.3e+02 Score=21.47 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 421 RLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 421 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
++|+.....|+..|...|.++++.+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5677677777777777777777776666667777777777764
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.08 E-value=3.9e+02 Score=26.83 Aligned_cols=61 Identities=5% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
..++.-|.+.+++++|+.++..|.=.....--....+.+++.+.+..--++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3567788899999999988887753210001123344445555555444455555555444
No 467
>PRK10941 hypothetical protein; Provisional
Probab=40.91 E-value=2.7e+02 Score=25.08 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG-CNPNVVSFNTLIRGFF 271 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~ 271 (491)
.+.|-.+|.+.++++.|+++.+.+...... +..-+.--.-.|.+.|.+..|..-++...+.. -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 456778899999999999999999886432 45556556666899999999999898887653 3455555555555554
Q ss_pred c
Q 011201 272 G 272 (491)
Q Consensus 272 ~ 272 (491)
+
T Consensus 263 ~ 263 (269)
T PRK10941 263 Q 263 (269)
T ss_pred h
Confidence 3
No 468
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.83 E-value=1.7e+02 Score=23.47 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 451 RKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 451 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 485 (491)
.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445555555444444444444444444444443
No 469
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.67 E-value=2.5e+02 Score=24.58 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHHHHC
Q 011201 448 ENRRKEGENLVNEMLDE 464 (491)
Q Consensus 448 ~g~~~~A~~~~~~m~~~ 464 (491)
.++.+.|+.++++....
T Consensus 191 ~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 191 AETLQLALALLQRAFQL 207 (230)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 34566677777666643
No 470
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.24 E-value=67 Score=21.52 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
++.++..+++..-.++++..+.+..+.
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344443333334444444433333
No 471
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.07 E-value=5.7e+02 Score=28.47 Aligned_cols=164 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCC-------------------------CC--HHHHHHHHHHHHhcCCHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGR-------------------------PS--VSIYNVLINGFVKCREFDKALG 211 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~--~~~~~~li~~~~~~~~~~~A~~ 211 (491)
.+..+|...|...+|+..|.+.....|.. +. ..-|-..+..+-+.+..+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHhhC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH-----------
Q 011201 212 FYDRMVRD---RVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD----------- 277 (491)
Q Consensus 212 ~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~----------- 277 (491)
+-...++. .-+--..+++.+.+.....|.+.+|.+.+-.-.. ...-......++..+++.|.++
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Q ss_pred -HHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 278 -EGVN-MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 278 -~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+... +++..-..........|+.|-..+...+++.+|-.+.-+...+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
No 472
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.02 E-value=1.4e+02 Score=21.37 Aligned_cols=42 Identities=10% Similarity=-0.002 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 281 NMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 281 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
++|+-....|+..|..+|..+++...-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666667666666555555555556665554
No 473
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.77 E-value=4.1e+02 Score=26.73 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=27.0
Q ss_pred HHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 348 IALEVVDE-LWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 348 ~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+..+.+.. +.+.|+..+......++... .|+...|+.+++++...
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhc
Confidence 33333333 34456666666666555443 58888888888776654
No 474
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.55 E-value=49 Score=32.02 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=21.2
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 341 CGEGNAGIALEVVDELWKKGNLPSVIAC-TTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 341 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.+.++++.|..++.+..+.. |+-..| ..=..++.+.+++..|+.=+.+.++
T Consensus 15 l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444555555555544432 222222 1112344444455444444444444
No 475
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.48 E-value=4.3e+02 Score=26.97 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNF 134 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~ 134 (491)
.|=..+..+.-.|.++.|.++++.
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHh
Confidence 444477888888999999999844
No 476
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.42 E-value=4.3e+02 Score=26.96 Aligned_cols=248 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHH
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP-DVVTFNI 230 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ 230 (491)
+....|..+++.+ +.-+.++-.++++++.. .. ...+..++++....|......-+.+.+....+.+ .....-.
T Consensus 308 ~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCH------HHHHHHHHHHHHcCC-CCChh
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNV-------VSFNTLIRGFFGERKF------DEGVNMAYEMIELGC-EFSSV 296 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~-~~~~~ 296 (491)
.+-...+.-..+-...+++-+......+.. .+|..++.-+|..... ++..+.+.+..+... .-|..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC--CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE--GNAGIALEVVDELWKKGNLPSVIACTTLIEG 374 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 374 (491)
--...|.++.+.|.......+...+. .....+...-...+.++.+. ...+.+..++-.+....-.+...-..+++..
T Consensus 462 ~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred heeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHH
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 011201 375 LRRLRKGVEASGLMEKMLKE-GILPDSVTFNCL 406 (491)
Q Consensus 375 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l 406 (491)
..-.-.......+...+... ..+....+|+.|
T Consensus 541 m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 541 METKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.17 E-value=75 Score=24.00 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=24.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 442 VSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 442 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
+..+...+..-.|.++++++.+.+...+..|....++.+...|-..
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3334444444556666666655555555555555555555555443
No 478
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.89 E-value=3e+02 Score=24.91 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=42.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN----E 308 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 308 (491)
..+++..+.+.+......+ +......+...|.. ..+..+|.++|..+-+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4566777777777766643 22333333333332 23456666666655555532 223333333333 2
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 011201 309 GRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~ 327 (491)
.+..+|..+++...+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 2455555555555555443
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.81 E-value=3.5e+02 Score=25.69 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC---RNKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+-.+.++-.+-..+...|+.+.|.+++++..-. =..++......+. ..|.. ++ .....-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~--------rL-~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNC--------RL-DYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCcc--------cc-CCccccchHHH
Confidence 346777778888888888888888888775421 0000111110000 00000 00 00111145555
Q ss_pred HHH---HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 011201 264 NTL---IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLC-NEGRVLKACELVIDFSR 323 (491)
Q Consensus 264 ~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~ 323 (491)
.++ |..+.+.|-+..|+++.+-+...+..-|......+|+.|+ +.++++-.+++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444 5567788888888888888888776667777777777765 55677777777776554
No 480
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.51 E-value=63 Score=17.03 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 449 NRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 449 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
|+.+.|.++|++++... .-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45667777777776542 234555555443
No 481
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=37.71 E-value=3.8e+02 Score=25.79 Aligned_cols=49 Identities=12% Similarity=-0.111 Sum_probs=29.8
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011201 297 TCEILVDGLCN---EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGN 345 (491)
Q Consensus 297 ~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 345 (491)
.+--+++++.+ -.+.+.|+.++..|++.|-.|--..-..++.++-.-|.
T Consensus 248 ~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 248 AHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred hHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 33445555544 46778888888888888876654444445555544443
No 482
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.27 E-value=2.2e+02 Score=22.81 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
..-.|.++++.+.+.+...+..|.--.++.+.+.|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555554444444433444444443
No 483
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.22 E-value=3.5e+02 Score=25.17 Aligned_cols=138 Identities=9% Similarity=-0.068 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 187 RPSVSIYNVLINGFVKCR------------EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+-|+.+|-.++..--+.- -.+.-+.++++..+.+. -+...+...|..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 446777766665433321 13455667777666633 35566677777788888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHc------CC----CCCh-------hhHHHHHHHHHhcCCHHHH
Q 011201 255 GCNPNVVSFNTLIRGFFG---ERKFDEGVNMAYEMIEL------GC----EFSS-------VTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 255 g~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~------~~----~~~~-------~~~~~ll~~~~~~g~~~~a 314 (491)
... +...|...|..... .-.++....+|.+..+. +. ..-. .++..+...+.+.|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 333 56677777765544 23455666655544321 11 0001 1222333344567888888
Q ss_pred HHHHHHHHhCCC
Q 011201 315 CELVIDFSRRGV 326 (491)
Q Consensus 315 ~~~~~~~~~~~~ 326 (491)
..+++.+.+.++
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 888888777654
No 484
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.95 E-value=6.3e+02 Score=28.11 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=60.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 011201 373 EGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----E 448 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~ 448 (491)
.++.-.....++..+..+|.-.|-.-+.. =.+-+-..|..=+++.|..-++.|...-+.++...+..+..+|-+ .
T Consensus 531 d~~sf~~~ms~~~~ii~~ll~s~t~teV~-E~Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~ 609 (1251)
T KOG0414|consen 531 DAISFSDEMSEAIPIISQLLFSKTTTEVK-EAIDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRP 609 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccC
Confidence 33333444455666666665544321111 111112335555667777777777776666666666666666643 2
Q ss_pred ---CCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 011201 449 ---NRRKE----GENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQ 489 (491)
Q Consensus 449 ---g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 489 (491)
+...+ |..++..+....+ -|...+..++..+...|.++.+
T Consensus 610 ~~n~~~~e~~~ia~NL~~l~~~~s~-~d~~slE~vl~~lv~~~~Id~~ 656 (1251)
T KOG0414|consen 610 DGNSKASEASSIAQNLSKLLIDASI-GDLTSLEEVLCELVARGYIDAA 656 (1251)
T ss_pred CCCchhhHHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHhCCCccHH
Confidence 23333 3444444443322 2556666777777776666654
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.60 E-value=2.6e+02 Score=23.52 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=16.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567777777777777777765
No 486
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=5e+02 Score=26.79 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=17.9
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLA 176 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (491)
..|++..........|.+.+++.+|+..
T Consensus 234 P~Pdd~~ll~~a~~IYlKf~~~~~al~~ 261 (878)
T KOG2005|consen 234 PGPDDVALLRTALKIYLKFNEYPRALVG 261 (878)
T ss_pred CCchhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455555666667777777777666554
No 487
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=2.3e+02 Score=30.13 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=64.8
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLA 244 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A 244 (491)
...|+++.|++.-.++ .+..+|..|.....+.|+.+-|+..|++.+. |+.|--.|.-.|+.++-
T Consensus 654 Le~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred hhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 3455555554432222 3556666666666666666666666665543 23333344555666665
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 245 LGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 245 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
.++.+....+ +..+ .......-.|+.++-.++++.. |..| ..|-. ....|.-++|.++.++....
T Consensus 718 ~Km~~iae~r----~D~~--~~~qnalYl~dv~ervkIl~n~---g~~~--laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEIR----NDAT--GQFQNALYLGDVKERVKILENG---GQLP--LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhh----hhhH--HHHHHHHHhccHHHHHHHHHhc---Cccc--HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 5554444332 1111 1111112236666555555442 2221 22221 23467888999999888764
No 488
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.12 E-value=6.2e+02 Score=27.81 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCCCCH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA-NRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
....++.+...++|.+|..+.++-.- ..+ +....++..|-.-+..+.++ ++.+.--.++..+... + -+.
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~RkhRI---dlN----ll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E-D--vt~ 766 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRKHRI---DLN----LLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE-D--VTK 766 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhcc---ccc----eEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--ccc
Confidence 34556777888999999888765422 111 11122344454445555543 3433333333333221 1 111
Q ss_pred HHHHHHH------------HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHc
Q 011201 191 SIYNVLI------------NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--KFDLALGLFREMREK 254 (491)
Q Consensus 191 ~~~~~li------------~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~ 254 (491)
..|.... ......+++...-+.+....+.. .-...-...++.+|++.+ ++++|+.+..++.+.
T Consensus 767 tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 767 TMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1122111 11122234444444444333221 113334567788888888 889999999888876
No 489
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.91 E-value=4.1e+02 Score=26.18 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=51.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcC
Q 011201 200 FVKCREFDKALGFYDRMVRDRVKPDV---VTFNILISGFC-RNKKFDLALGLFREMREKGCNPNVVS--FNTLIRGFFGE 273 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~ 273 (491)
.+..|..+- .+.+.+.|..++. ...+.|..+.. +.|+.+- ++.+.+.|..++... -...+...+..
T Consensus 80 a~~~~~~~i----v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 151 (480)
T PHA03100 80 YNLTDVKEI----VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLES 151 (480)
T ss_pred HHhhchHHH----HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHc
Confidence 444554433 3334445544432 22333333332 5555544 334444565543321 12344444555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVT--CEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
|. .-.++++.+.+.|..++... -...+...+..|+.+- ++.+.+.|..++
T Consensus 152 ~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i----v~~Ll~~ga~~~ 203 (480)
T PHA03100 152 NK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV----IKFLLDNGADIN 203 (480)
T ss_pred CC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH----HHHHHHcCCCcc
Confidence 52 12334555666676554322 1234455556665543 334445555444
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.86 E-value=5.6e+02 Score=27.18 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVG 414 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 414 (491)
...+++..+ +.++.+.|+.++.+|++.|..|....-..++.+....|
T Consensus 261 ~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 261 TISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 333344332 44677777777777777776665554444444443344
No 491
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.77 E-value=2.2e+02 Score=22.54 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=35.7
Q ss_pred CHhhHHHHHHHHHcCC---CHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 329 KDFDYFGLVEKLCGEG---NAGIALEVVDELWKKG-NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 329 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+..+-..+..++.++. ++.+.+.+++++.+.. ..-.-.....|.-++.+.++++++.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3344444555555543 3445666666666521 1112233334455667777777777777776663
No 492
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.72 E-value=3.3e+02 Score=25.48 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 381 GVEASGLMEKMLKEGILPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 381 ~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
.+++..++..+++. -|+ ..-|.++++.....|.++..+.+|++++..|..|=...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666666653 334 23456666666667777777777777777777766555555555543
No 493
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.54 E-value=1.4e+02 Score=31.51 Aligned_cols=111 Identities=7% Similarity=0.063 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..+|..|...-..+|+.+-|...|++.+. |+.|--.|.-.|+.++-.++.+-...++ |..+. ..
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~---~q 735 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ---FQ 735 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH---HH
Confidence 35677788888888888887777776654 4556666777899988888776554331 33221 11
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
...-.|+.++-.++++.. |..| ..|-. ....|.-++|.++.++..+.
T Consensus 736 nalYl~dv~ervkIl~n~---g~~~--laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILENG---GQLP--LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhccHHHHHHHHHhc---Cccc--HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 222357888777777653 3222 22221 23457778888888888764
No 494
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=34.99 E-value=3.3e+02 Score=24.35 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISA 137 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (491)
.+.+++.+.+.+.-..|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 35566677677777777777766644
No 495
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=34.75 E-value=5.6e+02 Score=26.87 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
.+-++++-.+.++=..+.+.|.+
T Consensus 513 Fml~lskIErle~klatM~~m~n 535 (830)
T KOG1923|consen 513 FMLSLSKIERLEEKLATMEFMGN 535 (830)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHh
Confidence 34445555555555555555543
No 496
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.65 E-value=4.2e+02 Score=28.90 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcchhhHHHHHhhccCCCCCCCCChHHHHHHHHhhhcCCCC
Q 011201 8 LPPILIHNKSPPPPPAPSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLLHFLKSKLHHHPQ 87 (491)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (491)
.|++..+.++.++.|.|. .+..+...+.+.+....+.........+.+...++.... ..++....+.+.
T Consensus 907 ~P~~~~~~~~~s~~Ptp~--~~~~~~~Q~~~~~~~~~~~~P~~~~~i~~~~e~~~~r~~-a~~~~~~krkl~-------- 975 (1049)
T KOG0307|consen 907 SPPIPQPLPPVSPAPTPG--QPAPLQSQPLPTAPAPKHPIPEELQIIETFLEELLQRCS-ARTDPQTKRKLK-------- 975 (1049)
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCcccccCCCCCCcccCCchHHHHHHHHHHHHHHHhh-ccCCHHHHHHHH--------
Q ss_pred chhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 88 FTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFIS 136 (491)
Q Consensus 88 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (491)
....-++++-.-.....+.|+......-|..+.+.+++++|..+...|.
T Consensus 976 d~~kRL~~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 976 DVTKRLEILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHHHHHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
No 497
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=34.49 E-value=2.1e+02 Score=21.84 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHH
Q 011201 385 SGLMEKMLKE-GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL------------------DPDGMTYHILVSGY 445 (491)
Q Consensus 385 ~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------------------~p~~~~~~~li~~~ 445 (491)
.+.|.++... +-.+...+...+...++-..+ .+..+++.|.+.|. ..-...+...+..+
T Consensus 3 ~~~y~~L~~~~~~~~~~vtl~elA~~l~cS~R--n~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~ 80 (115)
T PF12793_consen 3 LEQYQRLWQHYGGQPVEVTLDELAELLFCSRR--NARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEEL 80 (115)
T ss_pred HHHHHHHHHHcCCCCcceeHHHHHHHhCCCHH--HHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHH
Q 011201 446 TRENRRKEGENLVN 459 (491)
Q Consensus 446 ~~~g~~~~A~~~~~ 459 (491)
...|++++|.++++
T Consensus 81 l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 81 LEQGKYEQALQLLD 94 (115)
T ss_pred HHcCCHHHHHHHHH
No 498
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=5.7e+02 Score=26.84 Aligned_cols=302 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCChhhHHHHHHHHHhc------CChh
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMV-RDRVKPDVVTFNILISGFCRN------KKFD 242 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~------~~~~ 242 (491)
+.+.+...+.+.+....+-...+--.+-..|...|++++|++.--... ...+.++...+.+++.-|... ..++
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~ 118 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYK 118 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhc
Q ss_pred ----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-H
Q 011201 243 ----------LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR-V 311 (491)
Q Consensus 243 ----------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~ 311 (491)
+-..++++|.++.+ +..-|..+|.......+++.-.+. .|.... +....+.+++.+..... .
T Consensus 119 ~~~~~~~iD~rL~~iv~rmi~kcl--~d~e~~~aiGia~E~~rld~ie~A--il~~d~---~~~~~~yll~l~~s~v~~~ 191 (929)
T KOG2062|consen 119 NPEQKSPIDQRLRDIVERMIQKCL--DDNEYKQAIGIAFETRRLDIIEEA--ILKSDS---VIGNLTYLLELLISLVNNR 191 (929)
T ss_pred CccccCCCCHHHHHHHHHHHHHhh--hhhHHHHHHhHHhhhhhHHHHHHH--hccccc---cchHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
+--.+++..+.+.-.......|..+.++|.-..+.+.+.++++++.+. |......-|.-.....-..+-+....+.
T Consensus 192 efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e----~~~llayQIAFDL~esasQefL~~v~~~ 267 (929)
T KOG2062|consen 192 EFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE----DDLLLAYQIAFDLYESASQEFLDSVLDR 267 (929)
T ss_pred HHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc----chhhhHHHHHHHHhhccCHHHHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 392 LKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 392 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
....-.-+......++..+.- +...+++....-..-..|....+..-+.. |..-...|.-+.+-....|-. +..
T Consensus 268 l~~d~~~de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT-~D~ 341 (929)
T KOG2062|consen 268 LPADDARDEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAGTT-SDT 341 (929)
T ss_pred cccccccccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCc-chH
Q ss_pred HHHHHHHHHHhcCCccc
Q 011201 472 TYNSYMDGLSNARKSVR 488 (491)
Q Consensus 472 ~~~~ll~~~~~~g~~~~ 488 (491)
-+..=+..++++.+|.+
T Consensus 342 FlR~NL~WlskAtNWaK 358 (929)
T KOG2062|consen 342 FLRNNLDWLSKATNWAK 358 (929)
T ss_pred HHHhchhHHhhcchHhh
No 499
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.36 E-value=4.9e+02 Score=26.12 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----------------CCCCHHHHHHHH
Q 011201 380 KGVEASGLMEKMLKE-GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG----------------LDPDGMTYHILV 442 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g----------------~~p~~~~~~~li 442 (491)
..++..++++...+. |+..+......++. ...|++..|...++.+...+ -..+....-.|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011201 443 SGYTRENRRKEGENLVNEMLDEGFIP 468 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~~~~p 468 (491)
++..+ |+.++|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.34 E-value=1.2e+02 Score=22.96 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.++..+...+..-.|.++++++.+.+...+..|....++.+.+.|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Done!