Query 011201
Match_columns 491
No_of_seqs 681 out of 3058
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 03:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.4E-34 2.5E-38 287.8 41.4 381 89-490 100-570 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.4E-33 2.2E-37 281.0 40.1 364 107-490 82-536 (597)
3 4g26_A Pentatricopeptide repea 100.0 5.2E-33 1.8E-37 271.0 24.1 214 243-482 8-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 9.9E-33 3.4E-37 269.0 25.4 185 228-412 29-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-27 2.6E-31 223.2 44.2 355 115-490 5-359 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.8E-26 1.6E-30 217.7 46.7 372 90-485 16-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 5.8E-27 197.0 41.4 364 108-491 25-446 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.9E-22 6.6E-27 196.5 39.9 316 150-477 22-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.2E-22 1.8E-26 196.8 36.0 361 89-471 22-483 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.8E-21 6.3E-26 192.9 35.1 361 110-490 7-469 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 4.8E-24 170.3 40.0 320 154-483 3-353 (359)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-20 1.2E-24 184.7 37.6 361 110-490 26-482 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.8E-19 2.7E-23 165.2 39.8 320 109-447 3-352 (359)
14 3fp2_A TPR repeat-containing p 99.9 6.9E-19 2.3E-23 175.4 38.1 355 90-464 42-491 (537)
15 3hym_B Cell division cycle pro 99.9 1.5E-18 5.1E-23 161.4 32.9 290 189-486 21-321 (330)
16 3hym_B Cell division cycle pro 99.8 2.3E-18 7.8E-23 160.1 31.9 291 154-452 22-322 (330)
17 2xm6_A Protein corresponding t 99.8 3E-16 1E-20 154.4 47.5 332 91-464 61-432 (490)
18 1fch_A Peroxisomal targeting s 99.8 4.8E-19 1.6E-23 167.6 26.2 292 164-460 35-355 (368)
19 1fch_A Peroxisomal targeting s 99.8 3.5E-18 1.2E-22 161.6 27.7 308 167-490 14-350 (368)
20 3spa_A Mtrpol, DNA-directed RN 99.8 4.1E-20 1.4E-24 185.3 13.0 151 189-344 126-286 (1134)
21 2xm6_A Protein corresponding t 99.8 3.4E-15 1.2E-19 146.9 46.6 353 93-490 27-423 (490)
22 4eqf_A PEX5-related protein; a 99.8 6.4E-18 2.2E-22 159.7 25.3 264 193-460 68-352 (365)
23 4eqf_A PEX5-related protein; a 99.8 7.7E-18 2.6E-22 159.2 25.3 266 155-425 66-352 (365)
24 3spa_A Mtrpol, DNA-directed RN 99.8 8.1E-20 2.8E-24 183.3 10.3 152 328-484 125-286 (1134)
25 3cv0_A Peroxisome targeting si 99.8 4.1E-17 1.4E-21 151.4 27.2 278 155-461 22-312 (327)
26 3cv0_A Peroxisome targeting si 99.8 4E-17 1.4E-21 151.5 26.6 248 150-425 51-311 (327)
27 3mkr_A Coatomer subunit epsilo 99.8 2.9E-16 9.9E-21 142.9 29.4 252 116-393 6-263 (291)
28 2ooe_A Cleavage stimulation fa 99.8 3.3E-15 1.1E-19 148.5 38.2 384 89-490 28-483 (530)
29 3mkr_A Coatomer subunit epsilo 99.8 4.2E-16 1.4E-20 141.8 27.9 274 161-456 6-286 (291)
30 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.6E-23 162.0 9.5 220 155-411 33-252 (449)
31 1b89_A Protein (clathrin heavy 99.7 3E-17 1E-21 153.0 16.4 280 166-490 15-302 (449)
32 4g1t_A Interferon-induced prot 99.7 4.6E-15 1.6E-19 145.2 31.5 351 108-465 50-460 (472)
33 1xi4_A Clathrin heavy chain; a 99.7 2.6E-13 8.7E-18 141.0 41.5 271 160-482 1055-1326(1630)
34 2ooe_A Cleavage stimulation fa 99.7 8.4E-13 2.9E-17 131.1 41.9 360 90-464 63-492 (530)
35 4g1t_A Interferon-induced prot 99.7 8.2E-14 2.8E-18 136.3 34.0 332 154-490 51-450 (472)
36 3uq3_A Heat shock protein STI1 99.7 9.7E-15 3.3E-19 130.3 25.0 229 191-464 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-14 5.2E-19 129.0 25.1 226 153-393 4-235 (258)
38 1xi4_A Clathrin heavy chain; a 99.7 1.3E-13 4.4E-18 143.2 34.5 311 116-490 1056-1375(1630)
39 2pl2_A Hypothetical conserved 99.7 1.4E-14 4.7E-19 125.9 21.8 196 154-356 5-211 (217)
40 1ouv_A Conserved hypothetical 99.7 3.6E-13 1.2E-17 121.4 31.7 221 154-393 6-250 (273)
41 1ouv_A Conserved hypothetical 99.7 5.5E-13 1.9E-17 120.2 32.2 224 189-430 5-252 (273)
42 2pl2_A Hypothetical conserved 99.7 2.1E-14 7.2E-19 124.7 21.6 197 188-390 3-210 (217)
43 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.6E-18 129.6 27.3 235 149-391 92-344 (382)
44 2ho1_A Type 4 fimbrial biogene 99.6 2.8E-13 9.6E-18 120.5 27.7 202 154-360 37-239 (252)
45 2vq2_A PILW, putative fimbrial 99.6 5.4E-13 1.8E-17 116.2 28.6 204 151-358 5-210 (225)
46 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.5E-18 129.0 25.9 249 109-376 97-364 (382)
47 3u4t_A TPR repeat-containing p 99.6 3.3E-13 1.1E-17 121.5 26.9 59 263-322 77-135 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 2.4E-13 8.2E-18 120.9 25.4 200 190-393 37-237 (252)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-14 8.8E-19 128.9 19.3 187 122-322 18-204 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.1E-14 1.4E-18 127.6 20.2 248 166-423 17-269 (275)
51 2vq2_A PILW, putative fimbrial 99.6 5.7E-13 1.9E-17 116.0 26.4 202 189-393 7-210 (225)
52 3u4t_A TPR repeat-containing p 99.6 2.9E-13 1E-17 121.8 25.3 250 225-480 3-265 (272)
53 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.5E-18 121.8 21.3 199 155-359 24-222 (243)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.4E-13 8.2E-18 120.1 21.7 201 188-393 21-221 (243)
55 3sf4_A G-protein-signaling mod 99.6 1.6E-13 5.5E-18 131.2 20.2 205 153-357 8-254 (406)
56 4a1s_A PINS, partner of inscut 99.6 2.7E-13 9.4E-18 130.0 21.2 279 153-464 47-372 (411)
57 3sf4_A G-protein-signaling mod 99.6 2E-13 6.7E-18 130.5 20.0 301 187-488 6-365 (406)
58 4a1s_A PINS, partner of inscut 99.6 1.2E-13 4.1E-18 132.5 18.3 168 155-322 87-290 (411)
59 3e4b_A ALGK; tetratricopeptide 99.5 5.5E-13 1.9E-17 129.2 22.4 314 115-465 9-388 (452)
60 3ro2_A PINS homolog, G-protein 99.5 4E-13 1.4E-17 124.6 19.4 276 156-464 7-332 (338)
61 3ro2_A PINS homolog, G-protein 99.5 1.4E-12 4.8E-17 120.9 21.3 244 154-428 43-331 (338)
62 3ulq_A Response regulator aspa 99.5 1.6E-12 5.6E-17 123.4 21.9 298 163-463 21-367 (383)
63 2ond_A Cleavage stimulation fa 99.5 5E-11 1.7E-15 109.4 28.9 217 171-393 33-269 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-11 5.4E-16 103.4 23.2 166 154-324 5-170 (184)
65 2ond_A Cleavage stimulation fa 99.5 7.1E-11 2.4E-15 108.4 29.3 218 207-429 33-270 (308)
66 3e4b_A ALGK; tetratricopeptide 99.5 7E-12 2.4E-16 121.5 23.2 337 91-463 56-420 (452)
67 3vtx_A MAMA; tetratricopeptide 99.5 1.7E-11 5.8E-16 103.1 22.6 162 228-393 8-169 (184)
68 3nf1_A KLC 1, kinesin light ch 99.5 8.5E-13 2.9E-17 121.1 15.3 174 150-323 23-223 (311)
69 3ulq_A Response regulator aspa 99.4 1.4E-11 4.9E-16 116.8 23.2 298 119-428 22-367 (383)
70 3nf1_A KLC 1, kinesin light ch 99.4 8E-13 2.7E-17 121.3 14.1 243 189-463 26-306 (311)
71 4abn_A Tetratricopeptide repea 99.4 7.5E-12 2.5E-16 122.1 21.5 219 206-458 84-315 (474)
72 4abn_A Tetratricopeptide repea 99.4 5.7E-12 1.9E-16 122.9 19.9 215 169-390 83-317 (474)
73 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.6E-16 123.7 21.8 170 149-323 4-173 (723)
74 3q15_A PSP28, response regulat 99.4 6.2E-11 2.1E-15 112.2 23.0 305 155-463 11-364 (378)
75 1hz4_A MALT regulatory protein 99.4 2.8E-10 9.5E-15 107.5 26.5 301 155-464 15-349 (373)
76 1hz4_A MALT regulatory protein 99.4 5.4E-10 1.8E-14 105.5 28.1 275 113-393 18-321 (373)
77 4e6h_A MRNA 3'-END-processing 99.4 3.7E-09 1.3E-13 106.2 35.1 370 106-490 63-561 (679)
78 3as5_A MAMA; tetratricopeptide 99.3 1.9E-10 6.6E-15 96.3 20.4 166 154-324 8-173 (186)
79 3q15_A PSP28, response regulat 99.3 4.4E-10 1.5E-14 106.3 25.1 312 107-428 8-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 94.7 20.9 166 110-290 9-174 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1.7E-10 5.9E-15 117.1 20.9 167 188-358 7-173 (723)
82 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5.1E-15 104.3 15.8 235 121-359 13-281 (283)
83 3edt_B KLC 2, kinesin light ch 99.2 9.4E-11 3.2E-15 105.6 14.3 203 261-463 44-280 (283)
84 4i17_A Hypothetical protein; T 99.2 2.6E-09 9E-14 93.0 20.8 205 259-477 6-220 (228)
85 4e6h_A MRNA 3'-END-processing 99.2 1.3E-07 4.6E-12 94.9 35.4 373 90-479 83-583 (679)
86 4i17_A Hypothetical protein; T 99.2 4.2E-09 1.4E-13 91.8 21.7 133 154-289 7-146 (228)
87 2fo7_A Synthetic consensus TPR 99.1 7.2E-09 2.5E-13 81.4 18.4 130 156-289 3-132 (136)
88 1qqe_A Vesicular transport pro 99.1 3E-09 1E-13 96.6 17.7 211 205-462 32-267 (292)
89 1qqe_A Vesicular transport pro 99.1 6.2E-09 2.1E-13 94.5 19.6 163 160-322 43-226 (292)
90 2fo7_A Synthetic consensus TPR 99.1 8.9E-09 3E-13 80.9 17.7 129 192-323 3-131 (136)
91 3qky_A Outer membrane assembly 99.1 1.5E-08 5.2E-13 90.3 20.5 104 108-219 14-126 (261)
92 3qky_A Outer membrane assembly 99.1 7.5E-09 2.6E-13 92.3 18.1 103 151-255 12-127 (261)
93 3dra_A Protein farnesyltransfe 99.1 1.9E-07 6.6E-12 84.2 26.9 237 157-428 36-286 (306)
94 3mv2_B Coatomer subunit epsilo 99.1 3.4E-08 1.2E-12 88.3 21.6 216 156-393 47-281 (310)
95 3mv2_B Coatomer subunit epsilo 99.0 4.4E-08 1.5E-12 87.5 21.1 246 161-429 20-282 (310)
96 3dra_A Protein farnesyltransfe 99.0 3E-07 1E-11 82.9 26.5 221 122-358 46-286 (306)
97 2r5s_A Uncharacterized protein 99.0 5.3E-09 1.8E-13 87.1 13.8 162 156-322 8-171 (176)
98 2pzi_A Probable serine/threoni 99.0 4.8E-09 1.6E-13 106.9 14.6 154 165-324 402-563 (681)
99 3urz_A Uncharacterized protein 99.0 3.1E-08 1.1E-12 84.8 17.6 58 266-324 60-117 (208)
100 3rjv_A Putative SEL1 repeat pr 99.0 8.4E-08 2.9E-12 82.4 20.3 162 295-465 18-198 (212)
101 3urz_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 84.3 18.0 192 260-478 4-198 (208)
102 2pzi_A Probable serine/threoni 99.0 8E-09 2.7E-13 105.3 15.8 182 120-310 402-583 (681)
103 3rjv_A Putative SEL1 repeat pr 99.0 1.3E-07 4.6E-12 81.1 21.0 176 172-360 4-198 (212)
104 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-07 4.7E-12 81.9 20.6 188 155-361 5-215 (225)
105 3qou_A Protein YBBN; thioredox 98.9 4.3E-08 1.5E-12 88.6 17.8 162 154-320 117-280 (287)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.4E-07 8E-12 80.4 21.6 191 109-327 4-216 (225)
107 4ga2_A E3 SUMO-protein ligase 98.9 1.2E-08 4.1E-13 82.4 11.9 139 121-274 9-148 (150)
108 4ga2_A E3 SUMO-protein ligase 98.9 6.6E-09 2.3E-13 83.9 10.2 145 161-310 4-149 (150)
109 2r5s_A Uncharacterized protein 98.9 2.2E-08 7.5E-13 83.3 12.8 52 234-286 15-66 (176)
110 2vsy_A XCC0866; transferase, g 98.9 7.1E-08 2.4E-12 96.4 18.8 155 167-326 2-159 (568)
111 2vsy_A XCC0866; transferase, g 98.9 7.9E-08 2.7E-12 96.1 18.3 156 122-292 2-160 (568)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 1E-07 3.4E-12 87.2 17.2 227 167-422 4-254 (307)
113 3qou_A Protein YBBN; thioredox 98.9 7.4E-08 2.5E-12 87.1 16.1 61 191-252 118-178 (287)
114 2uy1_A Cleavage stimulation fa 98.8 1.2E-05 4.2E-10 78.1 32.0 193 278-488 197-402 (493)
115 3q7a_A Farnesyltransferase alp 98.8 3.7E-06 1.3E-10 76.6 25.7 166 154-324 54-237 (349)
116 3q7a_A Farnesyltransferase alp 98.8 4.7E-06 1.6E-10 76.0 26.0 184 112-311 57-258 (349)
117 4gco_A Protein STI-1; structur 98.8 2.3E-07 7.8E-12 72.1 15.1 114 149-266 8-121 (126)
118 3u3w_A Transcriptional activat 98.8 3.2E-07 1.1E-11 83.2 18.0 167 156-322 77-264 (293)
119 2ifu_A Gamma-SNAP; membrane fu 98.8 3.5E-07 1.2E-11 83.5 17.2 166 156-322 38-222 (307)
120 3u3w_A Transcriptional activat 98.8 5.2E-06 1.8E-10 75.1 24.9 26 367-392 198-223 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.6E-11 75.3 19.2 126 157-289 9-150 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.2E-07 2.8E-11 76.0 18.3 146 191-341 7-167 (213)
123 1a17_A Serine/threonine protei 98.7 8.8E-07 3E-11 72.3 16.7 130 154-287 13-144 (166)
124 2qfc_A PLCR protein; TPR, HTH, 98.7 4.5E-06 1.6E-10 75.5 22.8 164 263-426 78-263 (293)
125 2qfc_A PLCR protein; TPR, HTH, 98.7 1.1E-06 3.6E-11 79.7 17.7 167 155-321 76-263 (293)
126 3gyz_A Chaperone protein IPGC; 98.7 1.1E-06 3.9E-11 70.4 15.7 101 151-254 33-133 (151)
127 1na0_A Designed protein CTPR3; 98.7 1.5E-06 5.1E-11 66.8 15.9 112 154-269 9-120 (125)
128 2uy1_A Cleavage stimulation fa 98.7 5.4E-05 1.8E-09 73.6 30.2 344 89-463 30-412 (493)
129 2lni_A Stress-induced-phosphop 98.6 1.5E-06 5E-11 67.9 15.7 121 149-273 11-131 (133)
130 1a17_A Serine/threonine protei 98.6 1.8E-06 6.1E-11 70.4 16.4 129 190-321 13-143 (166)
131 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.2E-11 67.9 14.8 121 151-275 9-129 (131)
132 1na0_A Designed protein CTPR3; 98.6 1.7E-06 5.9E-11 66.4 15.2 113 190-305 9-121 (125)
133 4gco_A Protein STI-1; structur 98.6 1.5E-06 5.3E-11 67.4 14.8 99 190-290 13-111 (126)
134 3gw4_A Uncharacterized protein 98.6 5.4E-07 1.9E-11 76.4 12.9 155 165-321 3-173 (203)
135 4f3v_A ESX-1 secretion system 98.6 1.9E-06 6.6E-11 75.9 16.1 196 156-360 10-238 (282)
136 2c2l_A CHIP, carboxy terminus 98.6 6.2E-07 2.1E-11 80.7 13.1 98 154-254 4-101 (281)
137 2lni_A Stress-induced-phosphop 98.6 2.1E-06 7E-11 67.0 14.7 119 188-309 14-132 (133)
138 2c2l_A CHIP, carboxy terminus 98.6 3.3E-07 1.1E-11 82.5 11.2 99 189-289 3-101 (281)
139 3gw4_A Uncharacterized protein 98.6 8.3E-07 2.8E-11 75.2 12.6 121 201-322 3-134 (203)
140 1p5q_A FKBP52, FK506-binding p 98.6 1.8E-06 6.1E-11 79.8 15.8 126 152-279 145-283 (336)
141 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.3E-11 72.4 13.4 124 164-291 20-146 (177)
142 4f3v_A ESX-1 secretion system 98.5 8.2E-07 2.8E-11 78.3 12.5 190 121-327 18-240 (282)
143 3gyz_A Chaperone protein IPGC; 98.5 1.8E-06 6E-11 69.3 13.3 125 155-290 10-134 (151)
144 3dss_A Geranylgeranyl transfer 98.5 0.00012 4.2E-09 66.3 26.8 140 164-308 39-192 (331)
145 2vyi_A SGTA protein; chaperone 98.5 2.9E-06 9.8E-11 65.8 14.3 119 189-310 11-129 (131)
146 2e2e_A Formate-dependent nitri 98.5 9E-07 3.1E-11 73.3 11.5 120 342-464 22-144 (177)
147 3upv_A Heat shock protein STI1 98.5 4.2E-06 1.4E-10 64.8 14.7 98 154-254 4-101 (126)
148 2vgx_A Chaperone SYCD; alterna 98.5 1.3E-06 4.6E-11 69.9 11.8 101 151-254 18-118 (148)
149 2fbn_A 70 kDa peptidylprolyl i 98.5 4.8E-07 1.6E-11 76.7 9.1 151 161-315 11-176 (198)
150 3dss_A Geranylgeranyl transfer 98.5 0.00033 1.1E-08 63.5 28.1 174 118-307 38-239 (331)
151 1p5q_A FKBP52, FK506-binding p 98.5 3.6E-06 1.2E-10 77.8 15.5 151 167-321 126-291 (336)
152 2vgx_A Chaperone SYCD; alterna 98.4 9.6E-07 3.3E-11 70.8 9.8 99 189-289 20-118 (148)
153 1elw_A TPR1-domain of HOP; HOP 98.4 1.8E-05 6.1E-10 59.8 16.2 98 155-255 5-102 (118)
154 2xcb_A PCRH, regulatory protei 98.4 6.5E-06 2.2E-10 65.3 13.4 101 151-254 15-115 (142)
155 3upv_A Heat shock protein STI1 98.4 1.2E-05 4.2E-10 62.0 14.1 98 190-289 4-101 (126)
156 4b4t_Q 26S proteasome regulato 98.4 3.2E-05 1.1E-09 74.1 19.7 209 115-323 10-244 (434)
157 1elw_A TPR1-domain of HOP; HOP 98.3 2.1E-05 7.3E-10 59.4 14.8 99 190-290 4-102 (118)
158 4b4t_Q 26S proteasome regulato 98.3 4.3E-05 1.5E-09 73.2 20.4 55 233-287 12-82 (434)
159 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.9E-10 62.5 13.2 99 154-254 8-112 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 1.9E-05 6.5E-10 64.3 14.9 101 151-254 8-108 (164)
161 2fbn_A 70 kDa peptidylprolyl i 98.3 1E-05 3.5E-10 68.3 13.6 134 154-289 38-186 (198)
162 1elr_A TPR2A-domain of HOP; HO 98.3 7.2E-06 2.5E-10 63.5 11.8 109 154-266 4-118 (131)
163 3q49_B STIP1 homology and U bo 98.3 2E-05 6.8E-10 61.8 14.4 98 364-463 8-105 (137)
164 2xcb_A PCRH, regulatory protei 98.3 1.1E-05 3.6E-10 64.1 12.7 100 189-290 17-116 (142)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 1.8E-05 6.1E-10 64.5 14.2 101 188-290 9-109 (164)
166 2kck_A TPR repeat; tetratricop 98.3 9.7E-06 3.3E-10 60.7 11.7 98 155-254 7-106 (112)
167 2dba_A Smooth muscle cell asso 98.3 2.9E-05 9.8E-10 61.6 15.0 100 151-254 25-128 (148)
168 3q49_B STIP1 homology and U bo 98.3 2.1E-05 7.3E-10 61.6 13.8 97 154-253 9-105 (137)
169 2dba_A Smooth muscle cell asso 98.2 5.3E-05 1.8E-09 60.0 15.4 100 188-290 26-129 (148)
170 4gcn_A Protein STI-1; structur 98.2 2.3E-05 7.9E-10 60.7 12.7 108 366-476 9-122 (127)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.4E-05 4.9E-10 61.7 11.7 113 366-481 5-123 (131)
172 2kck_A TPR repeat; tetratricop 98.2 2.9E-05 9.9E-10 58.0 12.5 60 193-253 9-68 (112)
173 3ro3_A PINS homolog, G-protein 98.2 1.8E-05 6.2E-10 63.7 11.5 134 154-287 9-156 (164)
174 1hxi_A PEX5, peroxisome target 98.2 2.1E-05 7.1E-10 60.4 11.1 95 157-254 20-114 (121)
175 3ro3_A PINS homolog, G-protein 98.1 2.5E-05 8.7E-10 62.9 11.3 23 369-391 133-155 (164)
176 1hxi_A PEX5, peroxisome target 98.1 3.5E-05 1.2E-09 59.1 11.4 88 233-322 25-112 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.2E-05 1.5E-09 73.8 14.5 138 154-315 268-405 (457)
178 2xev_A YBGF; tetratricopeptide 98.1 0.00011 3.6E-09 56.8 13.8 94 158-254 6-105 (129)
179 1wao_1 Serine/threonine protei 98.0 4.4E-05 1.5E-09 74.1 13.0 123 194-319 10-134 (477)
180 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.3E-10 77.2 9.5 121 160-284 12-134 (477)
181 2xev_A YBGF; tetratricopeptide 98.0 0.00027 9.1E-09 54.4 14.9 95 194-290 6-106 (129)
182 1dce_A Protein (RAB geranylger 98.0 0.00037 1.3E-08 68.9 19.3 176 166-347 40-243 (567)
183 1ihg_A Cyclophilin 40; ppiase 98.0 8.8E-05 3E-09 69.3 13.9 138 155-315 224-361 (370)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 9.6E-05 3.3E-09 71.3 14.5 166 168-358 248-414 (457)
185 1ihg_A Cyclophilin 40; ppiase 97.9 0.0001 3.4E-09 68.9 13.2 92 259-352 272-363 (370)
186 3rkv_A Putative peptidylprolyl 97.9 0.0002 6.7E-09 58.0 13.5 100 154-254 11-126 (162)
187 1dce_A Protein (RAB geranylger 97.9 0.00065 2.2E-08 67.2 19.6 174 123-312 43-243 (567)
188 3k9i_A BH0479 protein; putativ 97.9 5.9E-05 2E-09 57.3 9.4 88 122-219 3-90 (117)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 3.6E-05 1.2E-09 71.0 8.9 150 154-325 179-329 (338)
190 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.7E-09 59.6 10.7 62 401-463 64-125 (162)
191 2hr2_A Hypothetical protein; a 97.8 0.00028 9.7E-09 56.0 12.2 64 155-218 12-85 (159)
192 3k9i_A BH0479 protein; putativ 97.8 3.4E-05 1.2E-09 58.7 6.7 25 367-391 63-87 (117)
193 3n71_A Histone lysine methyltr 97.8 0.00013 4.3E-09 70.5 11.9 133 118-253 318-463 (490)
194 1klx_A Cysteine rich protein B 97.8 0.00064 2.2E-08 53.3 13.9 13 170-182 11-23 (138)
195 1klx_A Cysteine rich protein B 97.8 0.00067 2.3E-08 53.2 13.9 110 345-465 10-127 (138)
196 2l6j_A TPR repeat-containing p 97.8 0.00025 8.7E-09 52.8 10.8 87 401-490 5-98 (111)
197 2hr2_A Hypothetical protein; a 97.8 0.00039 1.3E-08 55.2 12.0 98 191-288 12-130 (159)
198 2if4_A ATFKBP42; FKBP-like, al 97.7 9E-05 3.1E-09 68.3 8.8 150 190-360 179-329 (338)
199 3n71_A Histone lysine methyltr 97.7 0.0002 7E-09 69.1 11.4 126 199-324 318-464 (490)
200 1na3_A Designed protein CTPR2; 97.6 0.0012 4E-08 46.9 11.3 81 153-236 8-88 (91)
201 2l6j_A TPR repeat-containing p 97.6 0.00012 3.9E-09 54.8 6.0 92 154-249 4-102 (111)
202 2kat_A Uncharacterized protein 97.5 0.00086 2.9E-08 50.4 9.6 79 172-253 3-81 (115)
203 1na3_A Designed protein CTPR2; 97.4 0.0014 4.8E-08 46.5 10.3 79 190-270 9-87 (91)
204 2kat_A Uncharacterized protein 97.4 0.0014 4.8E-08 49.2 10.6 80 127-219 3-82 (115)
205 3ma5_A Tetratricopeptide repea 97.3 0.0014 4.7E-08 48.0 9.0 66 151-218 4-69 (100)
206 1zu2_A Mitochondrial import re 97.3 0.00061 2.1E-08 54.0 6.9 69 342-413 14-93 (158)
207 1zu2_A Mitochondrial import re 97.3 0.00093 3.2E-08 53.0 7.8 98 164-266 12-130 (158)
208 3ma5_A Tetratricopeptide repea 97.2 0.0012 4E-08 48.3 7.7 82 108-200 6-87 (100)
209 1wy6_A Hypothetical protein ST 97.1 0.044 1.5E-06 41.3 14.8 138 272-431 19-156 (172)
210 3mkq_A Coatomer beta'-subunit; 97.0 0.021 7.2E-07 59.3 17.5 128 158-319 633-760 (814)
211 3qwp_A SET and MYND domain-con 96.9 0.012 4.2E-07 55.7 13.4 102 114-218 292-399 (429)
212 3qww_A SET and MYND domain-con 96.9 0.0045 1.5E-07 58.7 9.8 94 122-218 311-410 (433)
213 3mkq_A Coatomer beta'-subunit; 96.8 0.04 1.4E-06 57.2 18.0 154 161-354 606-760 (814)
214 3ly7_A Transcriptional activat 96.8 0.018 6.1E-07 52.5 12.7 48 107-165 192-244 (372)
215 3ly7_A Transcriptional activat 96.8 0.031 1.1E-06 51.0 14.3 74 397-474 274-347 (372)
216 2kc7_A BFR218_protein; tetratr 96.6 0.0066 2.3E-07 43.8 7.4 59 160-220 6-65 (99)
217 3qww_A SET and MYND domain-con 96.6 0.012 4.1E-07 55.8 10.5 87 377-463 310-410 (433)
218 3qwp_A SET and MYND domain-con 96.6 0.023 7.8E-07 53.9 12.3 92 372-463 294-399 (429)
219 1wy6_A Hypothetical protein ST 96.5 0.17 5.7E-06 38.2 13.6 139 307-467 19-157 (172)
220 2kc7_A BFR218_protein; tetratr 96.3 0.011 3.9E-07 42.5 7.1 54 235-289 10-64 (99)
221 3mkq_B Coatomer subunit alpha; 96.3 0.3 1E-05 39.2 15.6 26 190-215 34-59 (177)
222 3mkq_B Coatomer subunit alpha; 96.3 0.26 9E-06 39.5 15.0 45 236-286 16-60 (177)
223 3bee_A Putative YFRE protein; 96.3 0.086 2.9E-06 37.5 11.2 68 151-220 3-73 (93)
224 1pc2_A Mitochondria fission pr 95.8 0.091 3.1E-06 41.1 10.1 84 312-399 15-103 (152)
225 3bee_A Putative YFRE protein; 95.7 0.17 5.7E-06 36.0 10.5 67 107-184 4-73 (93)
226 1pc2_A Mitochondria fission pr 95.6 0.08 2.7E-06 41.4 9.1 64 398-462 30-98 (152)
227 4ady_A RPN2, 26S proteasome re 95.4 3 0.0001 43.1 25.3 207 270-485 500-721 (963)
228 2v5f_A Prolyl 4-hydroxylase su 95.3 0.18 6.3E-06 36.6 10.0 63 191-253 6-74 (104)
229 2v5f_A Prolyl 4-hydroxylase su 95.2 0.17 5.9E-06 36.8 9.6 66 364-429 4-75 (104)
230 3u64_A Protein TP_0956; tetrat 95.1 0.2 6.8E-06 43.8 10.8 83 346-430 179-270 (301)
231 3u64_A Protein TP_0956; tetrat 95.0 0.16 5.4E-06 44.5 9.9 94 170-266 179-283 (301)
232 4ady_A RPN2, 26S proteasome re 94.7 2.3 8E-05 43.9 18.9 239 231-480 417-671 (963)
233 4b4t_P 26S proteasome regulato 94.4 1.8 6.2E-05 41.0 16.6 256 168-423 30-318 (445)
234 4h7y_A Dual specificity protei 94.2 1.5 5E-05 34.0 12.3 112 364-478 12-136 (161)
235 4b4t_P 26S proteasome regulato 94.2 3.9 0.00013 38.7 19.4 264 123-392 30-322 (445)
236 1nzn_A CGI-135 protein, fissio 93.8 0.38 1.3E-05 36.1 8.3 82 311-393 17-102 (126)
237 4fhn_B Nucleoporin NUP120; pro 93.5 1.7 5.7E-05 46.9 16.2 147 230-383 817-989 (1139)
238 4h7y_A Dual specificity protei 93.4 1.3 4.5E-05 34.2 10.8 51 344-395 74-124 (161)
239 4gns_B Protein CSD3, chitin bi 93.4 1.2 4E-05 45.1 13.7 52 409-461 346-397 (754)
240 3lvg_A Clathrin heavy chain 1; 92.9 0.00023 8E-09 66.2 -12.4 264 154-455 54-324 (624)
241 4gns_B Protein CSD3, chitin bi 92.4 2 6.8E-05 43.4 13.7 49 434-484 612-660 (754)
242 4fhn_B Nucleoporin NUP120; pro 92.1 4.7 0.00016 43.5 17.2 80 228-309 902-985 (1139)
243 1nzn_A CGI-135 protein, fissio 91.6 1.1 3.7E-05 33.7 8.2 85 382-470 18-107 (126)
244 2ff4_A Probable regulatory pro 91.1 1 3.5E-05 41.8 9.6 127 155-300 113-250 (388)
245 2ff4_A Probable regulatory pro 91.0 1.1 3.9E-05 41.5 9.8 72 193-265 174-250 (388)
246 1v54_E Cytochrome C oxidase po 89.4 4.4 0.00015 28.8 9.1 60 382-442 27-86 (109)
247 3lpz_A GET4 (YOR164C homolog); 88.7 13 0.00044 33.3 21.5 167 193-393 38-215 (336)
248 3o48_A Mitochondria fission 1 88.2 5.8 0.0002 29.9 9.7 70 328-399 38-110 (134)
249 3lvg_A Clathrin heavy chain 1; 87.9 0.0033 1.1E-07 58.7 -9.6 243 110-385 55-324 (624)
250 3txn_A 26S proteasome regulato 87.7 17 0.00058 33.5 26.1 297 154-465 19-344 (394)
251 1v54_E Cytochrome C oxidase po 87.2 5.9 0.0002 28.1 8.5 62 346-408 26-87 (109)
252 2y69_E Cytochrome C oxidase su 86.4 7.3 0.00025 29.4 9.1 61 382-443 70-130 (152)
253 3ffl_A Anaphase-promoting comp 85.7 7.1 0.00024 30.8 9.4 62 157-218 23-91 (167)
254 3o48_A Mitochondria fission 1 84.7 11 0.00037 28.4 11.2 74 396-471 36-112 (134)
255 2wpv_A GET4, UPF0363 protein Y 84.3 22 0.00074 31.6 19.5 111 193-318 36-157 (312)
256 1y8m_A FIS1; mitochondria, unk 84.2 12 0.00041 28.6 11.9 71 327-399 36-109 (144)
257 1wdy_A 2-5A-dependent ribonucl 83.9 3.3 0.00011 35.9 8.0 45 377-422 191-238 (285)
258 3ffl_A Anaphase-promoting comp 83.9 5.8 0.0002 31.3 8.2 127 112-253 23-150 (167)
259 2y69_E Cytochrome C oxidase su 83.6 9.1 0.00031 28.8 8.5 63 345-408 68-130 (152)
260 4b4t_R RPN7, 26S proteasome re 83.3 11 0.00038 35.4 11.7 97 227-323 133-236 (429)
261 2wpv_A GET4, UPF0363 protein Y 82.0 27 0.00092 30.9 22.5 167 157-358 36-216 (312)
262 1zbp_A Hypothetical protein VP 81.4 8.7 0.0003 33.1 9.0 116 162-289 5-129 (273)
263 3lpz_A GET4 (YOR164C homolog); 81.1 30 0.001 30.9 22.3 167 157-358 38-215 (336)
264 3esl_A Checkpoint serine/threo 78.5 19 0.00064 29.4 9.7 54 380-433 94-148 (202)
265 3eiq_C Programmed cell death p 78.1 23 0.00079 32.1 11.2 68 333-401 220-289 (358)
266 4b4t_R RPN7, 26S proteasome re 76.6 33 0.0011 32.1 12.5 97 156-254 133-237 (429)
267 1k1a_A B-cell lymphoma 3-encod 76.1 9.3 0.00032 32.0 8.0 27 197-223 13-39 (241)
268 1y8m_A FIS1; mitochondria, unk 75.6 25 0.00084 26.9 12.4 72 397-470 36-110 (144)
269 3esl_A Checkpoint serine/threo 73.7 31 0.0011 28.1 9.7 56 203-258 92-148 (202)
270 1wdy_A 2-5A-dependent ribonucl 72.3 8.3 0.00028 33.3 6.9 49 411-459 190-240 (285)
271 3txn_A 26S proteasome regulato 71.0 64 0.0022 29.7 25.3 131 190-321 19-165 (394)
272 2p58_C Putative type III secre 70.9 25 0.00086 24.9 7.9 78 380-465 22-99 (116)
273 2uwj_G Type III export protein 70.9 25 0.00085 24.9 7.3 78 380-465 21-98 (115)
274 3eiq_C Programmed cell death p 70.0 64 0.0022 29.2 12.7 69 368-437 220-290 (358)
275 1k1a_A B-cell lymphoma 3-encod 67.2 28 0.00094 29.0 9.0 28 232-259 13-40 (241)
276 2zu6_B Programmed cell death p 67.1 41 0.0014 29.7 10.0 59 193-253 6-66 (307)
277 4a1g_A Mitotic checkpoint seri 64.9 46 0.0016 25.7 9.0 53 418-470 83-136 (152)
278 2d2s_A Exocyst complex compone 64.9 37 0.0013 28.6 8.9 91 159-252 23-118 (235)
279 4b4t_S RPN3, 26S proteasome re 64.7 27 0.00093 33.4 8.7 65 190-254 231-299 (523)
280 3eu9_A Huntingtin-interacting 64.1 11 0.00036 31.5 5.7 15 446-460 218-232 (240)
281 2d2s_A Exocyst complex compone 63.7 35 0.0012 28.8 8.5 22 337-358 25-46 (235)
282 2nsz_A Programmed cell death p 62.2 47 0.0016 24.8 8.6 21 301-321 13-33 (129)
283 3t8k_A Uncharacterized protein 61.4 39 0.0013 27.0 8.4 65 195-259 40-108 (186)
284 2wvi_A Mitotic checkpoint seri 60.2 27 0.00091 27.5 6.6 53 383-435 78-131 (164)
285 3kea_A K1L; tropism, ANK repea 59.5 23 0.00078 30.8 7.1 143 197-356 35-184 (285)
286 4b4t_S RPN3, 26S proteasome re 59.4 32 0.0011 32.8 8.2 66 111-182 233-298 (523)
287 2nsz_A Programmed cell death p 58.9 54 0.0018 24.5 9.3 23 194-216 11-33 (129)
288 3t8k_A Uncharacterized protein 58.5 59 0.002 25.9 9.0 92 200-295 13-109 (186)
289 2ion_A PDCD4, programmed cell 58.4 50 0.0017 25.5 8.0 23 194-216 13-35 (152)
290 4a1g_A Mitotic checkpoint seri 56.4 67 0.0023 24.8 9.3 50 209-258 84-134 (152)
291 3jxi_A Vanilloid receptor-rela 55.6 13 0.00045 31.6 4.8 55 197-251 9-72 (260)
292 4g8k_A 2-5A-dependent ribonucl 55.5 1.1E+02 0.0037 27.0 12.4 147 302-470 172-329 (337)
293 2ion_A PDCD4, programmed cell 54.9 46 0.0016 25.7 7.2 22 300-321 14-35 (152)
294 3kea_A K1L; tropism, ANK repea 54.0 42 0.0014 29.0 7.9 186 231-437 34-225 (285)
295 1zbp_A Hypothetical protein VP 52.1 1.1E+02 0.0039 26.2 15.1 114 338-464 5-129 (273)
296 3l6a_A Eukaryotic translation 51.0 1.1E+02 0.0039 27.7 10.2 62 155-221 13-79 (364)
297 4aez_C MAD3, mitotic spindle c 50.8 32 0.0011 28.6 6.0 52 382-433 131-183 (223)
298 2uwj_G Type III export protein 50.6 64 0.0022 22.9 9.4 79 166-255 18-98 (115)
299 2p58_C Putative type III secre 50.4 65 0.0022 22.9 10.2 80 165-255 18-99 (116)
300 2fu4_A Ferric uptake regulatio 50.1 50 0.0017 22.0 6.1 62 425-487 7-69 (83)
301 2wvi_A Mitotic checkpoint seri 49.7 92 0.0032 24.4 9.4 50 209-258 79-129 (164)
302 2rfa_A Transient receptor pote 48.9 79 0.0027 25.9 8.6 21 340-360 161-181 (232)
303 1qsa_A Protein (soluble lytic 48.6 2.1E+02 0.0071 28.2 25.5 319 116-461 13-345 (618)
304 2xig_A Ferric uptake regulatio 47.7 78 0.0027 24.3 7.6 58 251-309 18-75 (150)
305 3eu9_A Huntingtin-interacting 47.3 40 0.0014 27.8 6.5 18 196-213 45-62 (240)
306 3hra_A Ankyrin repeat family p 47.0 41 0.0014 26.9 6.3 10 203-212 15-24 (201)
307 3hra_A Ankyrin repeat family p 46.3 22 0.00076 28.6 4.6 15 235-249 12-26 (201)
308 2ijq_A Hypothetical protein; s 45.1 1.1E+02 0.0037 23.9 8.1 50 204-253 46-103 (161)
309 3bge_A Predicted ATPase; struc 44.7 1.2E+02 0.0043 24.5 9.0 20 274-293 21-40 (201)
310 3pvs_A Replication-associated 44.6 2E+02 0.0069 26.9 14.8 37 308-344 268-304 (447)
311 2xig_A Ferric uptake regulatio 44.6 1E+02 0.0036 23.6 7.9 61 215-276 17-77 (150)
312 2r9g_A AAA ATPase, central reg 43.5 1.3E+02 0.0045 24.4 10.4 17 309-325 28-44 (204)
313 2r9g_A AAA ATPase, central reg 43.5 1.3E+02 0.0045 24.4 9.8 34 272-306 26-59 (204)
314 1ug3_A EIF4GI, eukaryotic prot 42.4 55 0.0019 29.4 6.8 25 193-217 14-38 (339)
315 2fe3_A Peroxide operon regulat 42.2 76 0.0026 24.2 6.7 41 269-309 30-70 (145)
316 1mzb_A Ferric uptake regulatio 42.0 1E+02 0.0034 23.1 7.3 34 346-379 34-67 (136)
317 2fe3_A Peroxide operon regulat 41.8 1E+02 0.0035 23.4 7.4 61 215-276 12-72 (145)
318 2zu6_B Programmed cell death p 40.6 1.9E+02 0.0065 25.4 12.5 60 155-217 4-65 (307)
319 2qx5_A Nucleoporin NIC96; mRNA 40.5 2.9E+02 0.0098 27.5 16.7 80 266-356 300-382 (661)
320 3l6a_A Eukaryotic translation 40.4 2.1E+02 0.0072 25.9 11.7 61 192-257 14-80 (364)
321 1ug3_A EIF4GI, eukaryotic prot 40.0 1.1E+02 0.0037 27.5 8.3 65 155-221 12-77 (339)
322 1mzb_A Ferric uptake regulatio 39.6 77 0.0026 23.8 6.3 58 251-309 9-67 (136)
323 3jxi_A Vanilloid receptor-rela 39.4 33 0.0011 29.0 4.7 55 232-286 9-72 (260)
324 4aez_C MAD3, mitotic spindle c 39.1 1.2E+02 0.0042 25.1 7.6 51 348-398 132-183 (223)
325 2w57_A Ferric uptake regulatio 38.8 1E+02 0.0036 23.5 7.0 35 345-379 32-66 (150)
326 4ets_A Ferric uptake regulatio 38.4 1.2E+02 0.0041 23.6 7.4 57 323-380 26-84 (162)
327 2rfa_A Transient receptor pote 37.8 95 0.0033 25.4 7.4 154 161-328 7-184 (232)
328 3eyy_A Putative iron uptake re 37.4 78 0.0027 24.1 6.1 31 348-378 35-65 (145)
329 3pvs_A Replication-associated 36.4 2.7E+02 0.0092 26.0 13.3 45 265-309 257-304 (447)
330 3bge_A Predicted ATPase; struc 36.2 1.7E+02 0.0059 23.7 8.6 33 238-270 20-52 (201)
331 2ijq_A Hypothetical protein; s 35.8 1.6E+02 0.0053 23.0 7.7 51 343-393 45-103 (161)
332 4gq2_M Nucleoporin NUP120; bet 35.0 2.1E+02 0.0071 30.0 10.6 49 296-344 898-950 (950)
333 3bu8_A Telomeric repeat-bindin 34.8 1.7E+02 0.0059 24.1 7.6 49 171-219 89-143 (235)
334 2w57_A Ferric uptake regulatio 34.8 88 0.003 24.0 6.0 35 275-309 32-66 (150)
335 3ctd_A Putative ATPase, AAA fa 34.7 1.9E+02 0.0065 23.7 9.6 20 309-328 49-68 (213)
336 2etb_A Transient receptor pote 33.9 51 0.0017 27.7 5.1 24 198-221 7-30 (256)
337 4fke_A Aminopeptidase N; zinc 33.0 4.4E+02 0.015 27.4 16.3 158 299-463 690-859 (909)
338 1bpo_A Protein (clathrin); cla 32.9 3.2E+02 0.011 25.7 10.9 70 185-255 356-425 (494)
339 3ctd_A Putative ATPase, AAA fa 32.8 2E+02 0.007 23.5 9.0 20 274-293 49-68 (213)
340 2fu4_A Ferric uptake regulatio 32.7 1.1E+02 0.0037 20.3 6.4 29 278-306 35-63 (83)
341 3aji_A 26S proteasome non-ATPa 32.7 87 0.003 25.6 6.2 18 198-215 11-28 (231)
342 4ets_A Ferric uptake regulatio 32.6 1.2E+02 0.0042 23.6 6.6 58 252-310 25-84 (162)
343 1bd8_A P19INK4D CDK4/6 inhibit 31.9 52 0.0018 24.9 4.4 19 197-215 6-24 (156)
344 3eyy_A Putative iron uptake re 31.9 99 0.0034 23.5 5.8 32 241-272 33-64 (145)
345 3utm_A Tankyrase-1; tankyrase, 31.0 2.4E+02 0.0081 24.6 9.4 121 159-294 26-151 (351)
346 3ltm_A Alpha-REP4; protein eng 29.5 2.2E+02 0.0074 22.8 17.9 111 188-310 31-141 (211)
347 4fke_A Aminopeptidase N; zinc 29.2 5E+02 0.017 26.9 18.7 91 193-288 689-786 (909)
348 1hm6_A Annexin 1; phospholipid 28.9 3.2E+02 0.011 24.5 12.3 238 206-462 45-319 (346)
349 2etb_A Transient receptor pote 28.8 80 0.0027 26.4 5.4 20 236-255 10-29 (256)
350 3ljn_A Hypothetical protein; a 28.0 1.3E+02 0.0045 26.8 7.0 14 411-424 252-265 (364)
351 3twr_A Tankyrase-2; ankyrin re 27.9 1.2E+02 0.0041 23.0 6.0 13 201-213 16-28 (165)
352 2pnn_A Transient receptor pote 27.4 46 0.0016 28.4 3.6 21 200-220 20-40 (273)
353 3ygs_P Procaspase 9; apoptosis 27.3 1.6E+02 0.0054 20.5 5.7 15 311-325 53-67 (97)
354 2o03_A Probable zinc uptake re 26.8 88 0.003 23.3 4.6 47 441-487 16-62 (131)
355 3ljn_A Hypothetical protein; a 26.5 1.2E+02 0.004 27.1 6.4 147 159-320 22-195 (364)
356 3bu8_A Telomeric repeat-bindin 26.4 2.4E+02 0.0083 23.2 7.1 49 381-429 88-143 (235)
357 2o03_A Probable zinc uptake re 26.4 1.2E+02 0.0041 22.5 5.4 44 231-274 16-59 (131)
358 1wgl_A TOLL-interacting protei 26.4 52 0.0018 20.6 2.7 22 203-224 36-57 (59)
359 2pnn_A Transient receptor pote 26.3 45 0.0015 28.5 3.3 57 159-215 15-79 (273)
360 3mwm_A ZUR, putative metal upt 26.1 78 0.0027 23.9 4.2 47 441-487 19-65 (139)
361 3ltj_A Alpharep-4; protein eng 25.6 2.5E+02 0.0085 22.2 19.5 118 157-288 62-179 (201)
362 3ltm_A Alpha-REP4; protein eng 25.2 2.6E+02 0.0089 22.3 19.2 118 157-288 67-184 (211)
363 3b7b_A Euchromatic histone-lys 25.2 1E+02 0.0036 25.2 5.4 17 196-212 47-63 (237)
364 3mwm_A ZUR, putative metal upt 25.1 1.1E+02 0.0037 23.1 4.9 44 231-274 19-62 (139)
365 2f6m_A Suppressor protein STP2 24.3 1.4E+02 0.0046 19.2 4.3 47 155-203 3-49 (65)
366 2b7e_A PRE-mRNA processing pro 24.0 80 0.0027 19.8 3.1 29 277-305 3-31 (59)
367 2yru_A Steroid receptor RNA ac 23.8 1.1E+02 0.0037 22.4 4.4 15 272-286 73-87 (118)
368 3twr_A Tankyrase-2; ankyrin re 23.5 1.3E+02 0.0045 22.8 5.4 15 235-249 15-29 (165)
369 3ygs_P Procaspase 9; apoptosis 23.4 1.9E+02 0.0065 20.1 5.9 14 241-254 53-66 (97)
370 3aji_A 26S proteasome non-ATPa 23.2 1.9E+02 0.0064 23.4 6.7 87 161-258 10-99 (231)
371 3d9h_A CDNA FLJ77766, highly s 22.5 79 0.0027 27.2 4.2 16 196-211 18-33 (285)
372 2keb_A DNA polymerase subunit 22.4 2.1E+02 0.0071 20.1 6.7 28 384-411 28-55 (101)
373 4gq2_M Nucleoporin NUP120; bet 22.0 6.9E+02 0.024 26.1 13.9 131 115-274 816-950 (950)
374 3i5p_A Nucleoporin NUP170; hel 21.5 5.4E+02 0.019 24.6 12.2 71 399-469 177-251 (525)
375 2p1h_A APAF-1, apoptotic prote 21.0 2.1E+02 0.007 19.6 6.7 33 344-380 50-82 (94)
376 1dm5_A Annexin XII E105K mutan 20.8 4.3E+02 0.015 23.2 8.7 156 312-477 16-195 (315)
377 1axn_A Annexin III; annexin fa 20.8 4.4E+02 0.015 23.3 13.1 238 207-462 22-295 (323)
378 3f3f_C Nucleoporin NUP85; stru 20.7 3.2E+02 0.011 26.4 8.0 87 228-316 482-570 (570)
379 3d5l_A Regulatory protein RECX 20.5 3.6E+02 0.012 22.2 9.7 14 314-327 95-108 (221)
380 2dzn_A Probable 26S proteasome 20.0 93 0.0032 25.3 4.0 15 200-214 9-23 (228)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-34 Score=287.81 Aligned_cols=381 Identities=10% Similarity=-0.025 Sum_probs=251.7
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+.+|..+.. ..|+..++..++..+.+.|++++|..+++.+... +.+..++..++.+|.+.|
T Consensus 100 ~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 100 YKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY------------NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG------------GTCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc------------ccchhHHHHHHHHHHHHh
Confidence 3457888887764 3467788888888999999999999888877432 223567788888888888
Q ss_pred ChhHHHHHHHHHHHhc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------
Q 011201 169 RMNDGLLAFEAMRKLI--------------DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK------------ 222 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------------ 222 (491)
++++|+++|+++.... +...+..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 8888888887533211 11235778888888888888888888888887654321
Q ss_pred ----------------------------------------------------------CChhhHHHHHHHHHhcCChhHH
Q 011201 223 ----------------------------------------------------------PDVVTFNILISGFCRNKKFDLA 244 (491)
Q Consensus 223 ----------------------------------------------------------p~~~~~~~li~~~~~~~~~~~A 244 (491)
++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 3445555555556666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 245 LGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 245 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
.++|+++.+.+.. +..+|..++.+|.+.|++++|.++++++.+.. ..+..++..++..|.+.|++++|.++|+++.+.
T Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666665554432 45555566666666666666666666655433 235566666667777777777777777766654
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN 404 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 404 (491)
... +..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+
T Consensus 403 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 DPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 322 4556667777777777777777777776665432 56666777777777777777777777776642 22566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTK----GLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
.++.+|.+.|++++|.++++.+.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 7777777777777777777766554 45565 5667777777777777777777777776543 235667777777
Q ss_pred HHHhcCCccccc
Q 011201 479 GLSNARKSVRQT 490 (491)
Q Consensus 479 ~~~~~g~~~~A~ 490 (491)
+|.+.|++++|.
T Consensus 559 ~~~~~g~~~~A~ 570 (597)
T 2xpi_A 559 VYLHKKIPGLAI 570 (597)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhCCHHHHH
Confidence 777777777664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-33 Score=280.96 Aligned_cols=364 Identities=9% Similarity=-0.036 Sum_probs=316.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 107 HDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
++...|+.++..+.+.|++++|..+++++.... |+ ..++..++.+|.+.|++++|+.+|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT-----------GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY--- 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC-----------CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc---
Confidence 567789999999999999999999999997532 22 367788999999999999999999998654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRD---------------RVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
+++..+++.++.+|.+.|++++|.++|+++... |...+..+|+.++.+|.+.|++++|+++|++|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578999999999999999999999999953222 22346889999999999999999999999998
Q ss_pred HHcCC----------------------------------------------------------------------CCCHH
Q 011201 252 REKGC----------------------------------------------------------------------NPNVV 261 (491)
Q Consensus 252 ~~~g~----------------------------------------------------------------------~p~~~ 261 (491)
.+.+. .++..
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 306 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHH
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHH
Confidence 75432 15777
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
+|+.++.+|.+.|++++|+++|+++.+.+.. +..++..++.+|.+.|++++|.++++++.+... .+..+++.++.+|.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 8888889999999999999999999877643 778888999999999999999999998886543 36788999999999
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..++.+|.+.|++++|.+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999886543 68899999999999999999999999999864 3478899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCccccc
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE----GFIPD--LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~A~ 490 (491)
+|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 999998864 447899999999999999999999999999876 67888 789999999999999999985
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.2e-33 Score=270.97 Aligned_cols=214 Identities=11% Similarity=0.058 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 243 LALGLFREMREKGCNPNV-VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
.+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 345555666666655443 346777777777777777777777777777777777777777777765542100
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 011201 322 SRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSV 401 (491)
Q Consensus 322 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 401 (491)
.+.+++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0112234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred h
Q 011201 482 N 482 (491)
Q Consensus 482 ~ 482 (491)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 3
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.9e-33 Score=269.02 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHcCCCCChhhH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK---------FDEGVNMAYEMIELGCEFSSVTC 298 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~~~~~~~ 298 (491)
++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 44555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555566666666665555566666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 379 RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412 (491)
Q Consensus 379 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 412 (491)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666655566666666655555544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.7e-27 Score=223.21 Aligned_cols=355 Identities=11% Similarity=-0.029 Sum_probs=295.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
+...+.+.|++++|...++.+.+.. |.....+..+...+.+.|++++|...++...+.. +.+..+|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-----------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-----------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHH
Confidence 3566778899999999998887643 4446777888888999999999999999888753 56788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+...|.+.|++++|.+.|+++.+... .+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcc
Confidence 999999999999999999999887532 24567889999999999999999999998886433 4567778888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++++|.+.|+++.+.... +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999887533 5778888999999999999999999999887543 56678888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 355 ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD 434 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 434 (491)
+....... +..++..+...|.+.|++++|++.|+++.+.+. -+..+|..+..++.+.|++++|...++.+.+.. +.+
T Consensus 228 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 304 (388)
T 1w3b_A 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 88876543 678888899999999999999999999988532 256788889999999999999999999988763 557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 435 GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 435 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
..+|..+...+.+.|++++|.+.++++.+.. ..+..++..+..++.+.|++++|.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999999999999999998542 335678899999999999998875
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.8e-26 Score=217.72 Aligned_cols=372 Identities=12% Similarity=0.012 Sum_probs=317.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|...|..+.... +.+...+..+...+...|++++|...++...... |....++..+...+.+.|+
T Consensus 16 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----------p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----------PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCchHHHHHHHHHHHHCCC
Confidence 34666666655432 2345667788888999999999999999887643 4557899999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999863 456778999999999999999999999999876422 45567788889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 250 EMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 250 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
++.+.... +..+|..+...+.+.|++++|+..|+++.+.+.. +...+..+...+...|++++|...+++..+.... +
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 99987443 6789999999999999999999999999987643 6778889999999999999999999999877543 5
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED 409 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 409 (491)
..++..+...|.+.|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. ..+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 778899999999999999999999999987644 67889999999999999999999999999863 4578899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 011201 410 LCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIP-DLATYNSYMDGLSNARK 485 (491)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 485 (491)
+.+.|++++|...++.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+. .| +...|..+...+...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998863 446789999999999999999999999999954 45 45677777777776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.7e-22 Score=196.96 Aligned_cols=364 Identities=10% Similarity=0.010 Sum_probs=294.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+..+...+.+.|++++|..+|+.+.... |....++..+..++...|++++|+..|+++.+.. +
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p 91 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--M 91 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 45578889999999999999999999998643 4446889999999999999999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHH------------HHHHHhcCChhHHHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNIL------------ISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l------------i~~~~~~~~~~~A~~~~~~m~ 252 (491)
.+..++..+..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|++.|+++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56889999999999999999999999999876422 33 555555 344889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 253 EKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 253 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
+.... +...+..+..+|.+.|++++|+++|+++.+... .+..++..+...|...|++++|...++.+.+.... +...
T Consensus 171 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 247 (450)
T 2y4t_A 171 EVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 247 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHH
Confidence 87543 788999999999999999999999999987643 36789999999999999999999999999876433 3334
Q ss_pred HHHH------------HHHHHcCCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 333 YFGL------------VEKLCGEGNAGIALEVVDELWKKGNLPS----VIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 333 ~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
+..+ ...+...|++++|.+.|+++.+.... + ...|..+...+.+.|++++|++.++++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME- 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 4444 78899999999999999999886433 2 4578889999999999999999999998752
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSG------------YTREN-----RRKEGENLVN 459 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~ 459 (491)
..+...|..+..+|...|++++|...++.+.+.. +-+...+..+..+ |...| +.+++.+.++
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHH
Confidence 2368899999999999999999999999998853 2245666666532 33344 6678888888
Q ss_pred HH-HHCC--CCCC-------HHHHHHHHHHHHhcCCcccccC
Q 011201 460 EM-LDEG--FIPD-------LATYNSYMDGLSNARKSVRQTR 491 (491)
Q Consensus 460 ~m-~~~~--~~p~-------~~~~~~ll~~~~~~g~~~~A~r 491 (491)
++ .+.. ..++ ...+..+..+|...|+.+++.+
T Consensus 405 ~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 405 KLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 73 3321 1122 2378899999999999887653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.9e-22 Score=196.54 Aligned_cols=316 Identities=13% Similarity=0.059 Sum_probs=268.4
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
.|.....+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+.+.. +...+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 98 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARL 98 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 46677889999999999999999999999998863 467999999999999999999999999999887533 678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHH------------HHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNV---VSFNTLI------------RGFFGERKFDEGVNMAYEMIELGCEFS 294 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~~~~~~ 294 (491)
.+..+|.+.|++++|.+.|+++.+.... +. ..+..++ ..+.+.|++++|+.+|+++.+... .+
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WD 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999999999999986432 33 5666554 448899999999999999998753 37
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHH---
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTL--- 371 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--- 371 (491)
..++..+..+|.+.|++++|.++++.+.+.... +..++..+...|...|++++|.+.|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 788999999999999999999999999876433 6788999999999999999999999999886543 45555544
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 011201 372 ---------IEGLRRLRKGVEASGLMEKMLKEGILPD-----SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMT 437 (491)
Q Consensus 372 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 437 (491)
...|.+.|++++|.++|+++.+. .|+ ...|..+..++.+.|++++|...++.+.+.. +.+...
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~ 331 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH
Confidence 78899999999999999999984 454 4578888999999999999999999988763 346899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYM 477 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 477 (491)
|..+..+|...|++++|.+.++++.+ +.|+ ...+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 99999999999999999999999995 4565 44555555
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.2e-22 Score=196.82 Aligned_cols=361 Identities=12% Similarity=-0.056 Sum_probs=252.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+..|..+.... |+..+|..+..++.+.|++++|...++.+.+.. |....++..+..++.+.|
T Consensus 22 ~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 22 YDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-----------PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----------hHHHHHHHHHHHHHHHHh
Confidence 455788888877643 678888888888888888888888888877643 444577888888888888
Q ss_pred ChhHHHHHHHHHHHhcCCC-------------------------------------------------------------
Q 011201 169 RMNDGLLAFEAMRKLIDGR------------------------------------------------------------- 187 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~------------------------------------------------------------- 187 (491)
++++|+..|+++.+.....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 8888888888887753200
Q ss_pred ----------------CCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCCCC--------ChhhHHHHHHHH
Q 011201 188 ----------------PSVSIYNVLINGFVK---CREFDKALGFYDRMVR-----DRVKP--------DVVTFNILISGF 235 (491)
Q Consensus 188 ----------------~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~li~~~ 235 (491)
.+...+..+...+.. .|++++|...|+++.+ ..-.| +...+..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 002223333333333 6778888888887766 31111 245666777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
...|++++|.+.|+++.+.... ...|..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 7888888888888887776433 677777777888888888888888877765432 5567777777788888888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
..++.+.+.... +...+..+...+...|++++|.+.++++.+.... +...|..+...+...|++++|.+.++++.+..
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 888877766543 4556777777778888888888888887765433 45677777777888888888888887776641
Q ss_pred C-CCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011201 396 I-LPD----SVTFNCLLEDLCD---VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFI 467 (491)
Q Consensus 396 ~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (491)
. .++ ...+..+...+.. .|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+. .
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~ 479 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--A 479 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--c
Confidence 1 111 3367777777777 788888888887777653 335667777778888888888888888887754 3
Q ss_pred CCHH
Q 011201 468 PDLA 471 (491)
Q Consensus 468 p~~~ 471 (491)
|+..
T Consensus 480 ~~~~ 483 (514)
T 2gw1_A 480 RTME 483 (514)
T ss_dssp SSHH
T ss_pred cccH
Confidence 5443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-21 Score=192.87 Aligned_cols=361 Identities=9% Similarity=-0.116 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+......+.+.|++++|...|+++.... | +..++..+..++.+.|++++|+..|+++.+.. +.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 72 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK-----------E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDY 72 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----------c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHH
Confidence 456778889999999999999999998754 2 25789999999999999999999999999874 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----------------------------------------------
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK----------------------------------------------- 222 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----------------------------------------------- 222 (491)
..+|..+..+|.+.|++++|...|+++...+..
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 889999999999999999999999998765421
Q ss_pred ------------------------------C-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCC-------
Q 011201 223 ------------------------------P-DVVTFNILISGFCR---NKKFDLALGLFREMRE-----KGC------- 256 (491)
Q Consensus 223 ------------------------------p-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~g~------- 256 (491)
| +...+......+.. .|++++|..+|+++.+ ..-
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 0 13334444444444 8999999999999988 311
Q ss_pred -CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011201 257 -NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335 (491)
Q Consensus 257 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (491)
..+..++..+...+...|++++|..+++++.+.... ..++..+...+...|++++|...++.+.+.... +...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHH
Confidence 123567888999999999999999999999987654 888899999999999999999999999887544 5667899
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 415 (491)
+...|...|++++|...++++.+.... +...+..+...+...|++++|.++++++.+.. ..+...+..+...+...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999987654 67788899999999999999999999998863 2356788899999999999
Q ss_pred hHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 416 TVDADRLRLLASTKGLD-PD----GMTYHILVSGYTR---ENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
+++|...++.+.+.... ++ ...|..+...|.. .|++++|.+.++++.+.. ..+..++..+...+.+.|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 99999999988764211 11 3488999999999 999999999999998753 336788999999999999999
Q ss_pred ccc
Q 011201 488 RQT 490 (491)
Q Consensus 488 ~A~ 490 (491)
+|.
T Consensus 467 ~A~ 469 (514)
T 2gw1_A 467 EAI 469 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.4e-19 Score=170.32 Aligned_cols=320 Identities=12% Similarity=0.032 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.... +...|..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 4667788999999999999999999998863 457889999999999999999999999999876422 6788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCN--PNVVSFNTL------------IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE 299 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 299 (491)
.+.+.|++++|.+.|+++.+.... .+...+..+ ...+...|++++|+++++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876330 144455544 5788999999999999999998754 3678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH----------
Q 011201 300 ILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACT---------- 369 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------- 369 (491)
.+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 9999999999999999999999887543 6778999999999999999999999999886543 334333
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 370 --TLIEGLRRLRKGVEASGLMEKMLKEGILPDS----VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 370 --~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
.+...+.+.|++++|.+.++++.+.... +. ..+..+..++...|++++|...++.+.+.. +.+...|..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2366688999999999999999885322 22 235557788999999999999999998863 347889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 011201 444 GYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNA 483 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 483 (491)
.|.+.|++++|.+.|+++.+. .|+ ...+..+..+....
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 999999999999999999954 455 55666666665443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.6e-20 Score=184.69 Aligned_cols=361 Identities=9% Similarity=-0.057 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+..+...+.+.|++++|...++++.... |....++..+..+|.+.|++++|++.|+++.+.. +.+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 92 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDH 92 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cch
Confidence 457778889999999999999999988753 4456889999999999999999999999998864 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------------------------CChh-------
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK------------------------------------PDVV------- 226 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------------------------------------p~~~------- 226 (491)
..++..+..++...|++++|.+.|+.+....-. |+..
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 888999999999999999999988644211100 0000
Q ss_pred -----------------------hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHH
Q 011201 227 -----------------------TFNILISGFCR--------NKKFDLALGLFREMREKGCNPN-------VVSFNTLIR 268 (491)
Q Consensus 227 -----------------------~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~ 268 (491)
....+...+.. .|++++|.++|+++.+.... + ..++..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 11111111111 14678888888888765332 2 234666667
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
.+...|++++|.+.++++.+.. |+..++..+...+...|++++|.+.++.+.+.... +..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 7788888888888888888764 34677778888888888888888888888776543 56678888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
|.+.++++.+.... +...|..+...+...|++++|.+.++++.+.. .-+...+..+...+...|++++|...++.+.+
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888876543 45778888888888888888888888888753 23466777888888888888888888888765
Q ss_pred CCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 429 KGL-----DPDGMTYHILVSGYTRE----------NRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 429 ~g~-----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
... ......+..+...|.+. |++++|.+.|+++.+.. ..+...+..+...|.+.|++++|.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 321 11122244455667777 88888888888888653 235677888888888888888775
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.8e-19 Score=165.23 Aligned_cols=320 Identities=10% Similarity=-0.007 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
...+..+...+...|++++|...++.+.... |....++..+..++...|++++|+..|+++.+.. +.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 69 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MD 69 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC
Confidence 4567788899999999999999999998753 4446789999999999999999999999999863 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHc
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNIL------------ISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+...|..+...+...|++++|.+.|++..+.... .+...+..+ ...+...|++++|.+.++++.+.
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7789999999999999999999999999876320 134445444 57889999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011201 255 GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYF 334 (491)
Q Consensus 255 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 334 (491)
... +...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++...+.... +...+.
T Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 226 (359)
T 3ieg_A 150 CVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFA 226 (359)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHH
Confidence 543 788899999999999999999999999998753 36788999999999999999999999999876543 222222
Q ss_pred ------------HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 335 ------------GLVEKLCGEGNAGIALEVVDELWKKGNLPSV----IACTTLIEGLRRLRKGVEASGLMEKMLKEGILP 398 (491)
Q Consensus 335 ------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 398 (491)
.+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|.+.+++..+.. ..
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 304 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc
Confidence 3366789999999999999999886544 33 235567788999999999999999999852 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 399 DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR 447 (491)
Q Consensus 399 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 447 (491)
+..++..+...+...|++++|...++.+.+.. +-+...+..+..+...
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 68899999999999999999999999999863 2345666666555443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=6.9e-19 Score=175.43 Aligned_cols=355 Identities=12% Similarity=-0.020 Sum_probs=280.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|+..|..+.... +.+..++..+...+.+.|++++|...++++.... |....++..+..++...|+
T Consensus 42 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-----------PDHSKALLRRASANESLGN 108 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CchHHHHHHHHHHHHHcCC
Confidence 34788888877643 3467889999999999999999999999998753 4456889999999999999
Q ss_pred hhHHHHHHHHHHHhcCC-----------------------------------CCCHH-----------------------
Q 011201 170 MNDGLLAFEAMRKLIDG-----------------------------------RPSVS----------------------- 191 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~-----------------------------------~~~~~----------------------- 191 (491)
+++|+..|+.+....+. .|+..
T Consensus 109 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 109 FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99999999644221000 00000
Q ss_pred -------HHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCC-------hhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 192 -------IYNVLINGFVK--------CREFDKALGFYDRMVRDRVKPD-------VVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 192 -------~~~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
....+...+.. .|++++|.++|+++.+.... + ..++..+...+...|++++|.+.|+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11222222211 14789999999998876422 2 2356777788899999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 250 EMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 250 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
++.+. .|+...|..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|.+.++.+.+.... +
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 343 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-N 343 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C
Confidence 99986 456888999999999999999999999999987643 6788999999999999999999999999887544 4
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG-----ILPDSVTFN 404 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~ 404 (491)
...+..+...|...|++++|.+.++++.+.... +...+..+...+...|++++|.+.|+++.+.. .......+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 567889999999999999999999999987543 67788999999999999999999999987642 111223344
Q ss_pred HHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 405 CLLEDLCDV----------GRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 405 ~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.....+... |++++|...++.+.+.. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555677777 99999999999998864 346788999999999999999999999999865
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-18 Score=161.37 Aligned_cols=290 Identities=9% Similarity=-0.081 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+...|++++|.++|+++.+.... +...+..++..+.+.|++++|..+++++.+.... +...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 3444455555555556666666655555543221 3344444555555556666666666655554322 4455555555
Q ss_pred HHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 269 GFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 269 ~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
.+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++.+.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555665 566666666665544322 3445555556666666666666666665554332 2334445666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG--------ILPDSVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~~~a 419 (491)
+|.+.+++..+.... +...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 666666666655432 45666666666777777777777776665531 122345666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCc
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIP-DLATYNSYMDGL-SNARKS 486 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~-~~~g~~ 486 (491)
...++.+.+.. +.+...|..+...|.+.|++++|.+.++++.+. .| +...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 77777766653 235666777777777777777777777777643 34 455566666656 344443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.3e-18 Score=160.13 Aligned_cols=291 Identities=10% Similarity=-0.078 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+...+..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.... +...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 3456778888999999999999999998864 456677778889999999999999999999886432 6778899999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 234 GFCRNK-KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+...| ++++|.+.|+++.+.... +...|..+...+...|++++|++.++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 999999 999999999999987543 6788999999999999999999999999987543 4567777999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG--------NLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
+|.+.++...+.... +...+..+...+...|++++|.+.+++..+.. .......|..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999887644 67789999999999999999999999988742 123467899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGY-TRENRRK 452 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~~~ 452 (491)
.+.+++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999988632 367788899999999999999999999988763 33677888888887 4556544
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=3e-16 Score=154.39 Aligned_cols=332 Identities=13% Similarity=0.044 Sum_probs=158.2
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLAS----SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK 166 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (491)
.|+..|..+... -+..++..+...+.. .+++++|...+++....+. ...+..+...|..
T Consensus 61 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------------~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 61 QAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-------------PQAQQNLGVMYHE 123 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHc
Confidence 344444444432 234444445555554 4555555555555444321 2334444444444
Q ss_pred ----cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-
Q 011201 167 ----ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR- 237 (491)
Q Consensus 167 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 237 (491)
.+++++|+..|++..+. -+..++..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 124 g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 196 (490)
T 2xm6_A 124 GNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRG 196 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcC
Confidence 44555555555554442 234444445555544 445555555555554443 44444444444444
Q ss_pred ---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 011201 238 ---NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN--- 307 (491)
Q Consensus 238 ---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 307 (491)
.++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLA 270 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCC
Confidence 455555555555554442 33444444444443 445555555555554443 23344444444444
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 011201 308 -EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE-----GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR-- 379 (491)
Q Consensus 308 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 379 (491)
.++.++|.++|+...+.| +...+..+...|... ++.++|.+.|++..+.+ +...+..+...|...|
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSE 344 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCH
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCc
Confidence 455555555555554443 223344444444443 45555555555555443 3344444444444433
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 011201 380 -KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----ENR 450 (491)
Q Consensus 380 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~ 450 (491)
+.++|+++|++..+.| +...+..+...|.. .++.++|...++...+.| +...+..|...|.+ .++
T Consensus 345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 4445555555555432 34444444444444 455555555555555443 34444445555544 455
Q ss_pred HHHHHHHHHHHHHC
Q 011201 451 RKEGENLVNEMLDE 464 (491)
Q Consensus 451 ~~~A~~~~~~m~~~ 464 (491)
.++|.+.|++..+.
T Consensus 419 ~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 419 YVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
Confidence 55555555555544
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=4.8e-19 Score=167.59 Aligned_cols=292 Identities=12% Similarity=0.016 Sum_probs=200.4
Q ss_pred HHHcCChhHHHH-HHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 164 FVKANRMNDGLL-AFEAMRKLIDGRP--SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 164 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
+.-.|++++|++ .|++..+.....| +...+..+...+.+.|++++|...|+++.+... .+...|..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 445678888888 7776655422222 356677888899999999999999999887643 367788888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEI---------------LVDGL 305 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~ 305 (491)
+++|++.|+++.+.... +..++..+...+...|++++|++.++++.+..... ...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998877543 77888889999999999999999999988765332 222211 13333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 306 CNEGRVLKACELVIDFSRRGVLP-KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
...|++++|...++.+.+..... +..++..+...|...|++++|.+.++++.+.... +...|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 37777788888877777654332 4566777777777778888888877777765432 566777777777777788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP----------DGMTYHILVSGYTRENRRKEG 454 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----------~~~~~~~li~~~~~~g~~~~A 454 (491)
++.|+++.+.. ..+...+..+..+|.+.|++++|...++.+.+..... ...+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 87777777642 2246677777777777777777777777766532110 156777777777777777777
Q ss_pred HHHHHH
Q 011201 455 ENLVNE 460 (491)
Q Consensus 455 ~~~~~~ 460 (491)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 777653
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.5e-18 Score=161.59 Aligned_cols=308 Identities=13% Similarity=-0.045 Sum_probs=228.3
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHhcCChh
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALG-FYDRMVRDRV---KPDVVTFNILISGFCRNKKFD 242 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~ 242 (491)
.+.++.+...|+.+.+.. ++ ++.-.|++++|.+ .|++...... ..+...+..+...+.+.|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD---AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHcCC---ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 344555556666665532 22 2334488899998 8886554321 114567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
+|...|+++.+.... +..+|..+..++.+.|++++|++.|+++.+.... +..++..+...|...|++++|.+.++.+.
T Consensus 82 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987543 7889999999999999999999999999987643 77889999999999999999999999998
Q ss_pred hCCCCCCHhhHHH--------------HHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 011201 323 RRGVLPKDFDYFG--------------LVEKLCGEGNAGIALEVVDELWKKGNLP-SVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 323 ~~~~~~~~~~~~~--------------li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
+............ .+..+...|++++|.+.++++.+..... +..++..+...|...|++++|+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 160 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp HTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8764422222111 2334448899999999999999875432 588899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011201 388 MEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFI 467 (491)
Q Consensus 388 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (491)
|+++.+.. ..+...+..+...+...|++++|...++.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+..-.
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99998853 2357889999999999999999999999998864 346888999999999999999999999999864211
Q ss_pred ----------CCHHHHHHHHHHHHhcCCccccc
Q 011201 468 ----------PDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 468 ----------p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
....+|..+..+|...|++++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 12689999999999999999885
No 20
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=185.33 Aligned_cols=151 Identities=10% Similarity=0.075 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVR---DRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
-..+||+||++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346788888888888888888888877653 47788888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHH
Q 011201 266 LIRGFFGERKF-DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK------DFDYFGLVE 338 (491)
Q Consensus 266 li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 338 (491)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++.+ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888774 67788888888888888888888777655443 233333333 2334433 445555666
Q ss_pred HHHcCC
Q 011201 339 KLCGEG 344 (491)
Q Consensus 339 ~~~~~g 344 (491)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.4e-15 Score=146.85 Aligned_cols=353 Identities=11% Similarity=0.024 Sum_probs=299.1
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH--
Q 011201 93 FHIFAWASTIDSFRHDHTTFLFIVRSLAS----SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK-- 166 (491)
Q Consensus 93 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 166 (491)
+..+..... .-+..++..+...+.. .+++++|...+++....+. ..++..+...|..
T Consensus 27 ~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-------------~~a~~~Lg~~y~~g~ 89 (490)
T 2xm6_A 27 LEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY-------------TPAEYVLGLRYMNGE 89 (490)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHcCC
Confidence 445554444 2456678888888888 8999999999999988642 3678889999999
Q ss_pred --cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---
Q 011201 167 --ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR--- 237 (491)
Q Consensus 167 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 237 (491)
.++.++|++.|++..+. .+..++..|...|.. .+++++|.+.|++..+.| +...+..|...|..
T Consensus 90 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 99999999999999875 477888889999998 889999999999998876 67788888888887
Q ss_pred -cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 011201 238 -NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN----E 308 (491)
Q Consensus 238 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 308 (491)
.+++++|++.|++..+.| +...+..+...|.. .++.++|+++|++..+.| +...+..+...|.. .
T Consensus 163 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999999875 78888899998888 899999999999999876 56778888888886 8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL-----R 379 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g 379 (491)
+++++|.++|+...+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... +
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 99999999999998875 44567777777877 899999999999998876 677788888888887 8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVG---RTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----ENRRK 452 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~ 452 (491)
+.++|+.+|++..+.| +...+..+...|...| +.++|.++++...+.| +...+..|...|.. .++++
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 9999999999999875 5567777877777766 7899999999999874 67888899999988 89999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCccccc
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSN----ARKSVRQT 490 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~ 490 (491)
+|.+.|++..+.| +...+..+...|.+ .++.++|.
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999876 57788888888887 78888774
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=6.4e-18 Score=159.74 Aligned_cols=264 Identities=11% Similarity=-0.047 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
+..+...+.+.|++++|.+.|+++.+... .+..+|..+...+.+.|++++|++.|+++.+.... +..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 44444444444444444444444443321 13444444444445555555555555544443221 34445555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHc
Q 011201 273 ERKFDEGVNMAYEMIELGCE---------FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL-PKDFDYFGLVEKLCG 342 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 342 (491)
.|++++|++.++++.+.... .....+..+...+...|++++|.++++++.+.... .+..++..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555554443210 01122333456666677777777777776665432 145566777777777
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
.|++++|.+.|+++.+.... +..+|+.+...|...|++++|++.|+++.+.. .-+..++..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777765433 56777777777888888888888887777742 22466777777778888888888887
Q ss_pred HHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 423 RLLASTKGLD-----------PDGMTYHILVSGYTRENRRKEGENLVNE 460 (491)
Q Consensus 423 ~~~~~~~g~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 460 (491)
++.+.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7776653210 1356788888888888888888776654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=7.7e-18 Score=159.19 Aligned_cols=266 Identities=9% Similarity=-0.101 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+... .+..+|..+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 457788899999999999999999999864 46789999999999999999999999999987642 367899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCN---------PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-FSSVTCEILVDG 304 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~ 304 (491)
|.+.|++++|++.|+++.+.... .....+..+...+.+.|++++|+++++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999875211 01223445688899999999999999999987543 267889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 305 LCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
|...|++++|.+.++++.+.... +..++..+..+|...|++++|.+.|+++.+.... +...|..+...|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999887543 6778999999999999999999999999987543 688999999999999999999
Q ss_pred HHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 385 SGLMEKMLKEGI---L--------PDSVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 385 ~~~~~~m~~~~~---~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
...|+++.+... . .+...|..+..++...|+.+.+..+.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999887421 1 1357788999999999999998887654
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=8.1e-20 Score=183.26 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=122.2
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWK---KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN 404 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 404 (491)
.-..+|+++|++||+.|++++|.++|++|.+ .|+.||.++||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011201 405 CLLEDLCDVGRT-VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD------LATYNSYM 477 (491)
Q Consensus 405 ~ll~~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll 477 (491)
++|.++|+.|+. ++|.+++++|.+.|+.||..+|++++.++.+.+ +++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999885 788899999999999999999999987766653 44444444 3355555 44455555
Q ss_pred HHHHhcC
Q 011201 478 DGLSNAR 484 (491)
Q Consensus 478 ~~~~~~g 484 (491)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=4.1e-17 Score=151.41 Aligned_cols=278 Identities=10% Similarity=-0.091 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+......+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 344556667777777777777777776652 34566677777777777777777777777665432 245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHH-HH-HHHhcCCHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEIL-VD-GLCNEGRVL 312 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~-~~~~~g~~~ 312 (491)
+...|++++|.+.++++.+.... +...+..++..+ ++......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 67777777777777666654222 111121110000 000111111 11 255667777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
+|.++++.+.+.... +...+..+...|...|++++|.+.++++.+.... +...|..+...+...|++++|.+.++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777665433 5566777777777788888888888777765433 56778888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 393 KEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP-----------DGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 393 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+.. ..+...+..+...+...|++++|...++.+.+..... +...|..+..+|.+.|++++|.+++++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 753 2356778888888888888888888888877653221 4678888889999999999999888754
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=4e-17 Score=151.49 Aligned_cols=248 Identities=9% Similarity=-0.033 Sum_probs=149.6
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
.|....++..+..++...|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+.
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 127 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGS 127 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHH
Confidence 45667788889999999999999999999999873 457889999999999999999999999999876432 333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR--GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
.+.... ++......+.. .+...|++++|.++++++.+.... +..++..+...+..
T Consensus 128 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 128 VNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNL 184 (327)
T ss_dssp ----------------------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 331100 01111111111 133444455555555554443322 34444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.|++++|.+.++.+.+.... +...+..+...+...|++++|.+.++++.+.... +...|..+...|...|++++|.+.
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555555555555443321 3444555666666666666666666666554322 455666667777777777777777
Q ss_pred HHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 388 MEKMLKEGILP-----------DSVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 388 ~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
++++.+..... +...+..+..++.+.|+.++|..+++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77666542111 355667777777777777777776543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.9e-16 Score=142.87 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=151.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCch-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEM-ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
++.....|++..|+..++...... |.. .+....+.++|...|++++|+..++.. ..|+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~-----------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~ 69 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS-----------PERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVR 69 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-----------chhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHH
Confidence 445556677777777766543321 222 234455567777777777777655431 245666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKP-DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
.+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 77777777777777777777776655444 344455555677777777777777766 23666777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTC---EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIAL 350 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 350 (491)
|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|.
T Consensus 144 g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776654 332111 1122333344666666666666665532 25555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 011201 351 EVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE-ASGLMEKMLK 393 (491)
Q Consensus 351 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 393 (491)
+.|++..+.... +..++..++..+...|+.++ +.++++++.+
T Consensus 221 ~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 221 GVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666655433 55556666666666666644 4456666555
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=3.3e-15 Score=148.49 Aligned_cols=384 Identities=9% Similarity=-0.004 Sum_probs=268.3
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH-HHHc
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA-FVKA 167 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 167 (491)
...|..+|+.+... ++.+...|...+..+.+.|++++|..+|++++... | ....|...+.. ....
T Consensus 28 ~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-----------p-~~~lw~~~~~~~~~~~ 93 (530)
T 2ooe_A 28 IDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-----------L-HIDLWKCYLSYVRETK 93 (530)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-----------C-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------C-ChHHHHHHHHHHHHHc
Confidence 45578888887764 56677788888888888899999999998887643 3 23455555543 2346
Q ss_pred CChhHHHH----HHHHHHHhcCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 168 NRMNDGLL----AFEAMRKLIDGR-PSVSIYNVLINGFVK---------CREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 168 ~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
|+.++|.+ +|++.....|.. .+...|...+....+ .|+++.|..+|++..+.........|.....
T Consensus 94 ~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 94 GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 77777665 777766544433 456778877776655 6788899999998877311111234433222
Q ss_pred HH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHcC----CCH---
Q 011201 234 GF-------------CRNKKFDLALGLFREMR------EKG---CNPN--------VVSFNTLIRGFFGE----RKF--- 276 (491)
Q Consensus 234 ~~-------------~~~~~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~----g~~--- 276 (491)
.. .+.++++.|..++.++. +.. +.|+ ...|...+...... ++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 11 12345677777776532 111 2333 24565555433322 232
Q ss_pred -HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 277 -DEGVNMAYEMIELGCEFSSVTCEILVDGLCN-------EGRVL-------KACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 277 -~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
+++..+|++..... +-+...|...+..+.+ .|+++ +|..+++...+.-.+-+...|..++..+.
T Consensus 254 ~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 36778888888764 2367788888777765 79987 89999999886323336778899999999
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPS-VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED-LCDVGRTVDA 419 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a 419 (491)
+.|++++|.++|+++.+.... + ...|..++..+.+.|+.++|.++|++..+.. ..+...|...... +...|+.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 999999999999999986432 3 3589999998999999999999999998852 1233333332222 3468999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCccccc
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG-FIPD--LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~A~ 490 (491)
..+|+...+.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+++.
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999988763 3468899999999999999999999999999863 3332 558888899888999887764
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=4.2e-16 Score=141.83 Aligned_cols=274 Identities=11% Similarity=0.054 Sum_probs=206.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
++-....|++.+|+..+++.... .|+ ....-.+..+|...|+++.|+..++.. -.|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 44556789999999988876543 243 345566788999999999999876542 355777888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 239 KKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
++.++|++.++++...+..|+ ...+..+...+.+.|++++|++.+++ ..+...+..++..|.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988775554 55667777899999999999999987 34778888899999999999999999
Q ss_pred HHHHHhCCCCCCHh---hHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 318 VIDFSRRGVLPKDF---DYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 318 ~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
++.+.+.. |+.. ....++..+...|++++|..+|+++.+... .+...|+.+..++.+.|++++|.+.|++.++.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998775 3321 112334455566889999999999988743 47888888999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011201 395 GILPDSVTFNCLLEDLCDVGRTVD-ADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456 (491)
Q Consensus 395 ~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 456 (491)
. .-+..++..++..+...|+.++ +.++++.+.+. .|+... +.+...+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 3 2267788888888888888875 56788888775 344332 2233444455555443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.3e-18 Score=161.96 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|.+.++...+. .+++.+.+.++.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~ 103 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH
Confidence 35555555555555555555555321 34445555555555555555555544433332 2234445555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 555555555555443 134445555555555555555555555543 2455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 315 CELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
.+.+..+ .+..+|..++.+|+..|+++.|......+ ...+.....++..|.+.|++++|+.+++.....
T Consensus 168 Vea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 168 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 5555544 13445555555555555555553333221 112222334555555555555555555554433
Q ss_pred CCCCCHHHHHHHHHHHH
Q 011201 395 GILPDSVTFNCLLEDLC 411 (491)
Q Consensus 395 ~~~p~~~~~~~ll~~~~ 411 (491)
. +-....|+.+.-+|+
T Consensus 237 e-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 237 E-RAHMGMFTELAILYS 252 (449)
T ss_dssp T-TCCHHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHHH
Confidence 2 223444444444443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3e-17 Score=152.96 Aligned_cols=280 Identities=11% Similarity=0.019 Sum_probs=127.8
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
+.|++++|.++++++.. | .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 56779999999998832 3 48999999999999999999999653 47789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
+.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977766653 3467888999999999999999888885 256679999999999999999999999876
Q ss_pred CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 326 VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNC 405 (491)
Q Consensus 326 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 405 (491)
..|..++.++.+.|++++|.+.++++ + ++.+|..++.+|+..|+++.|...... +..+..-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA---~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc---C---CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 36999999999999999999999988 2 789999999999999999999655443 2234444557
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 011201 406 LLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE--NRRKEGENLVNEMLDEGFIP------DLATYNSYM 477 (491)
Q Consensus 406 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll 477 (491)
++..|.+.|.+++|..+++...... .-...+|+-|..+|++- |+..+.+++|..-+ ++.| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999998887654 44566777777777664 44445555443211 2222 345677888
Q ss_pred HHHHhcCCccccc
Q 011201 478 DGLSNARKSVRQT 490 (491)
Q Consensus 478 ~~~~~~g~~~~A~ 490 (491)
-.|.+-|++|.|.
T Consensus 290 ~ly~~~~e~d~A~ 302 (449)
T 1b89_A 290 FLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHhhchHHHHH
Confidence 8888888877764
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.6e-15 Score=145.21 Aligned_cols=351 Identities=11% Similarity=-0.031 Sum_probs=234.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID-- 185 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 185 (491)
....|+.+..++...|++++|++.+++..+...... .....+....+|..+..+|...|++++|+..+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~--~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH--ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345789999999999999999999988754210000 0012244567899999999999999999999998765311
Q ss_pred -C---CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCC
Q 011201 186 -G---RPSVSIYNVLINGFVKC--REFDKALGFYDRMVRDRVKPDVVTFNILISG---FCRNKKFDLALGLFREMREKGC 256 (491)
Q Consensus 186 -~---~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g~ 256 (491)
. .....+++.+..++.+. +++++|.+.|++..+.... +...+..+... +...++.++|++.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 0 12356677666666654 5699999999998875422 44455544444 4456888999999999887643
Q ss_pred CCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 257 NPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 257 ~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
. +...+..+...+.. .|++++|.+++++..+.... +..++..+...|...|++++|...++...+.... +..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3 56666666555543 46788999999998877543 6778888999999999999999999999887544 4555
Q ss_pred HHHHHHHHHcC-------------------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 333 YFGLVEKLCGE-------------------GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 333 ~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+..+...|... +..+.|...+++..+.... +...+..+...|...|++++|++.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66665555322 2356777788887776533 556788889999999999999999999988
Q ss_pred CCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHh
Q 011201 394 EGILPDSV--TFNCLLE-DLCDVGRTVDADRLRLLASTKGL-----------------------DPDGMTYHILVSGYTR 447 (491)
Q Consensus 394 ~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~g~-----------------------~p~~~~~~~li~~~~~ 447 (491)
....+... .+..+.. .....|+.++|+..+++..+... +.+..+|..+..+|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 64333221 2222222 23567899999998887766421 2234566777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 011201 448 ENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 448 ~g~~~~A~~~~~~m~~~~ 465 (491)
.|++++|++.|++.++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 777777777777776553
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=2.6e-13 Score=141.01 Aligned_cols=271 Identities=14% Similarity=0.095 Sum_probs=196.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
+...+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 56667778888888888887531 2333333433 5677888888887652 5677888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
++++|++.|.+. -|...|..++.+|.+.|++++|.++|...++.. ++....+.++.+|++.+++++...++
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 888888888663 277788888888888888888888888777654 23333445888888888887544443
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. -+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 1 234556677888888888888888888874 36888888888888888888888766 25
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL-ATYNSYMD 478 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~ 478 (491)
..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+++++..+ |+.+.. ..|.-+..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHH
Confidence 67888888888888888888776432 33467778889999999999999999998887 444333 34544444
Q ss_pred HHHh
Q 011201 479 GLSN 482 (491)
Q Consensus 479 ~~~~ 482 (491)
.+++
T Consensus 1323 LyaK 1326 (1630)
T 1xi4_A 1323 LYSK 1326 (1630)
T ss_pred HHHh
Confidence 4443
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=8.4e-13 Score=131.14 Aligned_cols=360 Identities=8% Similarity=-0.056 Sum_probs=252.9
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHH
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSL-ASSYRFSELHS----VLNFISANPCPCSNDGIFSCPEMERIFHFAVNAF 164 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (491)
..|..+|..+... .|+...|...+... ...|+++.|.+ +|+....... ..+....+|...+...
T Consensus 63 ~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g--------~~~~~~~~w~~~~~~~ 131 (530)
T 2ooe_A 63 DKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG--------MEIMSYQIWVDYINFL 131 (530)
T ss_dssp HHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT--------TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC--------CCcccHHHHHHHHHHH
Confidence 3477888887764 36777777777544 34578877766 6666654310 1245567787777766
Q ss_pred HH---------cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------
Q 011201 165 VK---------ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGF-------------VKCREFDKALGFYDRM------ 216 (491)
Q Consensus 165 ~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~m------ 216 (491)
.+ .|++++|..+|++..+. ........|....... .+.++++.|..++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 132 KGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55 78999999999999873 1111123444332211 1245677788777763
Q ss_pred hhCC---CCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----
Q 011201 217 VRDR---VKPD--------VVTFNILISGFCRN----KKF----DLALGLFREMREKGCNPNVVSFNTLIRGFFG----- 272 (491)
Q Consensus 217 ~~~~---~~p~--------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----- 272 (491)
.+.. +.|+ ...|...+...... ++. +++..+|++....... +...|..++..+.+
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhh
Confidence 2221 2333 24555555433222 232 4778899998876332 67889888888875
Q ss_pred --CCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011201 273 --ERKFD-------EGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 273 --~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 343 (491)
.|+++ +|.++|++..+.-.+-+...+..++..+.+.|++++|..+|+.+.+....-....|..++..+.+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 79987 899999998863223367888999999999999999999999999864321135788889989999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIE-GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
|++++|.++|++..+.... +...|..... .+...|+.++|..+|++.++.. .-+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999999876432 2333332222 2346899999999999998852 22578899999999999999999999
Q ss_pred HHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 423 RLLASTKGL-DPD--GMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 423 ~~~~~~~g~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
|+.....+. .|+ ...|...+......|+.+.+.++++++.+.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988642 232 457888888888999999999999998754
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=8.2e-14 Score=136.29 Aligned_cols=332 Identities=9% Similarity=-0.096 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLI-------DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD-----R- 220 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~- 220 (491)
...|+.+...+...|++++|++.|++..+.. .......+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4689999999999999999999999876531 11335678999999999999999999999887542 1
Q ss_pred CCC-ChhhHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHcCCCCC
Q 011201 221 VKP-DVVTFNILISGFCR--NKKFDLALGLFREMREKGCNPNVVSFNTLIRG---FFGERKFDEGVNMAYEMIELGCEFS 294 (491)
Q Consensus 221 ~~p-~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~ 294 (491)
..+ ...++..+..++.+ .+++++|++.|++..+.... +...+..+..+ +...++.++|++.+++..+.... +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 111 24556655555554 45799999999999886433 45555555544 44568888999999998876533 5
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 295 SVTCEILVDGLCN----EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTT 370 (491)
Q Consensus 295 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (491)
..++..+...+.. .|++++|.+++++....... +..++..+...|...|++++|.+.+++..+..+. +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 5566655555544 46778999999988876544 5677889999999999999999999999887544 5666766
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 371 LIEGLRRL-------------------RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 371 li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
+...|... +..++|...+++..+... .+...+..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66555322 235678888888777532 2455677888899999999999999999988643
Q ss_pred CCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHhcCC
Q 011201 432 DPDG--MTYHILVS-GYTRENRRKEGENLVNEMLDEGF-----------------------IPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 432 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~-----------------------~p~~~~~~~ll~~~~~~g~ 485 (491)
.+.. ..+..+.. .+...|+.++|++.|++.++..- ..+..+|..+...|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3322 12233332 34578999999999988875421 2245678889999999999
Q ss_pred ccccc
Q 011201 486 SVRQT 490 (491)
Q Consensus 486 ~~~A~ 490 (491)
+++|.
T Consensus 446 ~~~A~ 450 (472)
T 4g1t_A 446 MQQAD 450 (472)
T ss_dssp CC---
T ss_pred HHHHH
Confidence 99886
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.7e-15 Score=130.28 Aligned_cols=229 Identities=13% Similarity=0.032 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLIR 268 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 268 (491)
..|..+...+...|++++|.+.|++..+.. .+...|..+..++...|++++|.+.+++..+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 344555555555555555555555554443 34455555555555555555555555554443111 0100
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
....++..+...+...|++++|...++...+.... ...+.+.|++++
T Consensus 77 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 77 ------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEK 123 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHH
Confidence 00234444444444445555555544444443211 123344455666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
|.+.++++...... +...|..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|...++.+.+
T Consensus 124 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666554321 44556666667777777777777777776643 22466677777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.. +.+...|..+...|.+.|++++|.+.+++..+.
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 53 334667777777777778888887777777643
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-14 Score=128.99 Aligned_cols=226 Identities=10% Similarity=0.048 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----hh
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PD----VV 226 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~----~~ 226 (491)
....+..+...+...|++++|+..|++..+.. .+..+|..+...|...|++++|.+.|++..+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 35678889999999999999999999999874 67889999999999999999999999998764221 12 57
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
.|..+...+.+.|++++|.+.|++..+.. |+. ..+.+.|++++|...++++.+... .+...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHH
Confidence 78888889999999999999999988753 342 335555777888888887776532 24455666666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
..|++++|...++...+.... +...+..+...|...|++++|.+.+++..+.... +...|..+...+.+.|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777776655433 4455666666666666666666666666654322 45556666666666666666666
Q ss_pred HHHHHHH
Q 011201 387 LMEKMLK 393 (491)
Q Consensus 387 ~~~~m~~ 393 (491)
.+++..+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1.3e-13 Score=143.21 Aligned_cols=311 Identities=11% Similarity=0.022 Sum_probs=235.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV-KANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
...+...|.+++|..+|++... +...+..+. ..|++++|.++.+++ -+..+|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-------------------~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWs 1109 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-------------------NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWS 1109 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHH
Confidence 4455566667777777766421 111222223 667788887777654 3578889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 9999999999999999999664 278889999999999999999999999877764 23333445999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.++
T Consensus 1182 rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 988644442 2 235566777999999999999999999885 369999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 355 ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD 434 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 434 (491)
+. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... .-.
T Consensus 1246 KA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH 1313 (1630)
T 1xi4_A 1246 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 1313 (1630)
T ss_pred Hh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhH
Confidence 76 2678999999999999999988887654 33466777889999999999999999998776543 334
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCccccc
Q 011201 435 GMTYHILVSGYTRE--NRRKEGENLVNEMLDEGFIP------DLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 435 ~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
...|.-+...|++. ++..++.++|..-. .+.+ +...|..+.-.|.+.|+++.|.
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 56777777777764 55666666665443 3322 4677999999999999999875
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.4e-14 Score=125.88 Aligned_cols=196 Identities=12% Similarity=-0.040 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 4567777888888888888888888887753 456777888888888888888888888887765422 5567777777
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 234 GFCRN-----------KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 234 ~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
.+.+. |++++|+..|++..+.... +...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 7777777777776665333 45666666677777777777777777776665 4566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 303 DGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
.+|...|++++|...++...+.... +...+..+...+...|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666777777777777666655432 4445556666666666666666666554
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=3.6e-13 Score=121.43 Aligned_cols=221 Identities=15% Similarity=0.031 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
..++..+...+...|++++|+..|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 456666677777777777777777777662 345666667777777 777777777777766654 566666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 230 ILISGFCR----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 230 ~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+++|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666766 777777777777766653 55666666666666 667777777776666654 34455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 302 VDGLCN----EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIE 373 (491)
Q Consensus 302 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 373 (491)
...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 556666666665555443 23344444455555 555555555555555443 2344444444
Q ss_pred HHHh----cCChHHHHHHHHHHHH
Q 011201 374 GLRR----LRKGVEASGLMEKMLK 393 (491)
Q Consensus 374 ~~~~----~g~~~~a~~~~~~m~~ 393 (491)
.|.. .++.++|.+.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 4444 4555555555554444
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=5.5e-13 Score=120.23 Aligned_cols=224 Identities=11% Similarity=-0.008 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR----NKKFDLALGLFREMREKGCNPNVVSFN 264 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~ 264 (491)
+..++..+...|...|++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55666777777777777777777777776632 45666667777777 777777777777777664 566677
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 265 TLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN----EGRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 265 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776654 55666666666666 667777777776666654 33445555
Q ss_pred HHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 337 VEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 337 i~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 566666666666665553 34555555555555 566666666666655542 2444445555
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 011201 409 DLCD----VGRTVDADRLRLLASTKG 430 (491)
Q Consensus 409 ~~~~----~g~~~~a~~~~~~~~~~g 430 (491)
.|.+ .++.++|.+.++...+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555556665555555543
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.1e-14 Score=124.71 Aligned_cols=197 Identities=11% Similarity=-0.030 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
++...+..+...+.+.|++++|...|++..+.... +...|..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 45556666777777777777777777776665322 5566666777777777777777777777665433 455666666
Q ss_pred HHHHcC-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 268 RGFFGE-----------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 268 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
..+.+. |++++|+..|++..+.... +...+..+...+...|++++|+..|++..+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 5556666555555554322 34445555555555555555555555555544 344445555
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 390 (491)
..+|...|++++|...|++..+..+. +...+..+...+.+.|++++|++.|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555544322 344444455555555555555555444
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.3e-13 Score=129.59 Aligned_cols=235 Identities=8% Similarity=0.062 Sum_probs=183.7
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhh
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE-FDKALGFYDRMVRDRVKPDVVT 227 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~ 227 (491)
..|....++..+...+.+.|++++|+..|+++.+.. +.+..+|+.+..++...|+ +++|++.|++..+.... +...
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a 168 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQV 168 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHH
Confidence 346677889999999999999999999999999874 4578899999999999997 99999999999886544 7788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
|+.+..++.+.|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999999999987655 7889999999999999999999999999988654 67888888888888
Q ss_pred -cCCHHHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHcCC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 308 -EGRVLKA-----CELVIDFSRRGVLPKDFDYFGLVEKLCGEG--NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 308 -~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.|..++| +..++..++.... +...|..+...+...| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHh
Confidence 5554666 4666666665433 4556666666666666 466677766666 322 224556666666666653
Q ss_pred ---------ChHHHHHHHHHH
Q 011201 380 ---------KGVEASGLMEKM 391 (491)
Q Consensus 380 ---------~~~~a~~~~~~m 391 (491)
..++|+++|+++
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHH
Confidence 236677777666
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=2.8e-13 Score=120.48 Aligned_cols=202 Identities=11% Similarity=-0.001 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..++..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.|+++.+... .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHH
Confidence 4667778888889999999999999888763 45678888888888899999999999988876542 26677788888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+.+.|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887733334 4566777778888888888888888887766432 4566677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777666443 244455666666666677777766666666543
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=5.4e-13 Score=116.15 Aligned_cols=204 Identities=11% Similarity=-0.015 Sum_probs=135.9
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|....++..+...+...|++++|+..|+++.+.. +.+...+..+...|...|++++|.+.|+++.+... .+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 81 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNN 81 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHH
Confidence 4456677778888888888888888888887753 34577778888888888888888888888766532 25667777
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 231 LISGFCRN-KKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 231 li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
+...+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|+..++++.+.... +...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 77777777 888888888877776322232 456667777777777777777777777665422 455566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
|++++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666666665543312344444555555555555555555555544
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.6e-13 Score=129.04 Aligned_cols=249 Identities=13% Similarity=0.067 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR-MNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~ 187 (491)
..+|..+...+.+.|++++|+..+++++... |....+|..+..++.+.|+ +++|+..|+++.+.. +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--P 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--C
Confidence 4568888889999999999999999998754 5567899999999999997 999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.+..+|+.+..++...|++++|+..|+++.+.... +...|..+..++.+.|++++|++.|+++.+.... +...|+.+.
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg 241 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRY 241 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 57899999999999999999999999999887544 7889999999999999999999999999998655 788999999
Q ss_pred HHHHc-CCCHHHH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011201 268 RGFFG-ERKFDEG-----VNMAYEMIELGCEFSSVTCEILVDGLCNEG--RVLKACELVIDFSRRGVLPKDFDYFGLVEK 339 (491)
Q Consensus 268 ~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 339 (491)
.++.+ .|..++| ++.|++.++.... +...|..+...+...| ++++|.+.+..+ +. ...+...+..+...
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~ 318 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHH
Confidence 99999 6665777 5889988887543 6778888888888888 689999999887 33 23356778889999
Q ss_pred HHcCC---------CHhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 011201 340 LCGEG---------NAGIALEVVDEL-WKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 340 ~~~~g---------~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~ 376 (491)
|.+.| ..++|.++++++ .+.... ....|..+...+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 98874 258999999998 565322 4556666665554
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=3.3e-13 Score=121.46 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
|..+...+...|++++|++.|++..+.... +..++..+...|...|++++|.+.+++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 334444444444444444444444433211 22333444444444444444444444333
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.4e-13 Score=120.91 Aligned_cols=200 Identities=13% Similarity=-0.006 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...|..+...+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 45566777777777777777777777765432 25566667777777777777777777777665332 55666666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
+...|++++|+++++++.+.+..| +...+..+...+...|++++|.+.++.+.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777666522222 3344555555666666666666666655554322 34445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.++++.+... .+...+..+...+...|+.++|.++++++.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555544332 2344444555555555555555555555544
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.6e-14 Score=128.94 Aligned_cols=187 Identities=9% Similarity=-0.079 Sum_probs=102.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 201 (491)
.+++++|...++.+...... ..|....++..+..++...|++++|+..|+++.+.. +.+..+|..+...|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRAL-------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccc-------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 35666777777766654211 113445566666677777777777777777766652 335666666666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN 281 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 281 (491)
..|++++|.+.|++..+.... +...+..+...+.+.|++++|.+.|+++.+.. |+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHH
Confidence 777777777777666654221 45556666666666666666666666666542 233333333333344455666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 282 MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.+++...... .+...+ .++..+...++.++|.+.+....
T Consensus 166 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 166 VLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred HHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 6555544321 122222 23444444445555555554443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=4.1e-14 Score=127.61 Aligned_cols=248 Identities=10% Similarity=-0.094 Sum_probs=163.7
Q ss_pred HcCChhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDL 243 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 243 (491)
..|++++|+..|+++.+..... .+..+|..+...+...|++++|.+.|++..+.... +...|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 4577889999999888752211 24677888888999999999999999988776432 67788888888899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
|.+.|+++.+.... +...|..+...+.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988876433 57788888888888899999998888888764 3333344444555666888888888876665
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 324 RGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP---SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS 400 (491)
Q Consensus 324 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 400 (491)
.... +.. ...++..+...++.++|.+.+++........ +...|..+...|.+.|++++|...|++..+. .|+.
T Consensus 173 ~~~~-~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KSDK-EQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HSCC-CST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cCCc-chH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 5322 222 2336666666777777777777665432110 1355566666666666666666666666653 2321
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233444555555554443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=5.7e-13 Score=116.00 Aligned_cols=202 Identities=9% Similarity=-0.062 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+...|++++|.+.|+++.+... .+...|..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 455566666677777777777777776665432 24556666666666666777776666666654322 4556666666
Q ss_pred HHHcC-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 269 GFFGE-RKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 269 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+.+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 66666666666666521112 1344555555555556666665555555544322 234444455555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
++|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555544433212344444444444445555555555544443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.9e-13 Score=121.82 Aligned_cols=250 Identities=12% Similarity=-0.004 Sum_probs=190.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHH
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF--SSVTCEILV 302 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll 302 (491)
...+......+.+.|++++|++.|++..+.... +...+..+...+...|++++|++.+++..+.+..+ ....|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 344555667788888888888888888876433 45578888888899999999999999888743221 223488899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 011201 303 DGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGV 382 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 382 (491)
..+...|++++|.+.++...+.... +...+..+...|...|++++|.+.+++..+.... +...|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 5568999999999999999999999998876433 6777777773444556999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR---TVDADRLRLLASTKG-LDPD------GMTYHILVSGYTRENRRK 452 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~g-~~p~------~~~~~~li~~~~~~g~~~ 452 (491)
+|.+.|+++.+.. ..+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..+...|.+.|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999853 2246777788888888888 888999888876541 1133 257888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011201 453 EGENLVNEMLDEGFIPD-LATYNSYMDGL 480 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 480 (491)
+|.+.|+++.+. .|+ ...+..+-...
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHC---
T ss_pred HHHHHHHHHHhc--CccHHHHHHHhhhhh
Confidence 999999999965 354 44444444333
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.3e-13 Score=121.77 Aligned_cols=199 Identities=14% Similarity=0.066 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 456666777778888888888888877642 44677777777888888888888888887766532 256667777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
+...|++++|.+.++++.+.... +...+..+...+.+.|++++|.++++++.+... .+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777765432 566677777777777777777777777766542 2455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 315 CELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
...++.+.+.... +..++..+...|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666554322 3444555555555566666666666555554
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=2.4e-13 Score=120.06 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.....|..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++|++.|+++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 3455677777777788888888888888776532 25667777777777888888888888877765432 566777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
..+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.... +...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 777777777777777777776543 24556666666666667777777666666554322 3444555555555566666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+|.+.++++.+.... +...|..+...|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666555554322 344555555555555555555555555554
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.6e-13 Score=131.16 Aligned_cols=205 Identities=15% Similarity=0.043 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-Ch
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRD----RVKP-DV 225 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 225 (491)
....+......+...|++++|+..|+++.+.....+. ..+|..+...|...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445666777888888888888888888776311111 356777788888888888888888876432 1111 23
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCC--------------------HHHHH
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREKGCN-PN----VVSFNTLIRGFFGERK--------------------FDEGV 280 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~a~ 280 (491)
.++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666777777778888888777776543100 01 3356666666777777 66666
Q ss_pred HHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHcCCCHhHHH
Q 011201 281 NMAYEMIEL----GCE-FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL-PK----DFDYFGLVEKLCGEGNAGIAL 350 (491)
Q Consensus 281 ~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~ 350 (491)
+.+++..+. +.. ....++..+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666655432 100 01234445555555555555555555554432100 00 113444444444444444444
Q ss_pred HHHHHHH
Q 011201 351 EVVDELW 357 (491)
Q Consensus 351 ~~~~~m~ 357 (491)
+.+++..
T Consensus 248 ~~~~~al 254 (406)
T 3sf4_A 248 EYYKKTL 254 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=2.7e-13 Score=129.98 Aligned_cols=279 Identities=13% Similarity=0.009 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CC
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRD----RV-KP 223 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p 223 (491)
....+..+...+...|++++|+..|+++.+.. +.+. .+|..+...|...|++++|.+.|++..+. +- ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34556667788888999999999999888863 2232 46788888888888999998888876542 11 11
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCC-----------------HHHHHH
Q 011201 224 DVVTFNILISGFCRNKKFDLALGLFREMREK----GC-NPNVVSFNTLIRGFFGERK-----------------FDEGVN 281 (491)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~ 281 (491)
....+..+...|...|++++|.+.+++..+. +- .....++..+...|...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3345666777777777777777777776543 10 1123355556666666666 555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 282 MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
.+++..+.. . +.+. .....++..+...|...|++++|.+.+++..+..
T Consensus 205 ~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 205 FYQENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 555443210 0 0000 0011234444555555555555555555544321
Q ss_pred CC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 361 NL-----PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG--IL---PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 361 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.. .....+..+...|...|++++|.+.+++..+.. .. ....++..+...+...|++++|...+++..+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 012255666666777777777777776665431 00 013456666677777777777777777665421
Q ss_pred ----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 431 ----L-DPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 431 ----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
. .....++..+...|.+.|++++|.+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0 011346667777888888888888888877643
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=2e-13 Score=130.54 Aligned_cols=301 Identities=15% Similarity=0.050 Sum_probs=229.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD----VVTFNILISGFCRNKKFDLALGLFREMREK----GCNP 258 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p 258 (491)
......+..+...+...|++++|...|++..+.+.. + ...|..+...+...|++++|...+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456677788889999999999999999998876322 3 357888999999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------HH
Q 011201 259 -NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-FS----SVTCEILVDGLCNEGR--------------------VL 312 (491)
Q Consensus 259 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~--------------------~~ 312 (491)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2557888899999999999999999988654211 11 3478888899999999 99
Q ss_pred HHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChH
Q 011201 313 KACELVIDFSRR----GVL-PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL-PS----VIACTTLIEGLRRLRKGV 382 (491)
Q Consensus 313 ~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~ 382 (491)
+|.+.++...+. +.. ....++..+...|...|++++|.+.+++..+.... ++ ...|..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876543 211 12456888899999999999999999988753110 11 347888899999999999
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHH
Q 011201 383 EASGLMEKMLKEGI-LPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD-PD----GMTYHILVSGYTRENRRK 452 (491)
Q Consensus 383 ~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~~~ 452 (491)
+|...+++..+... ..+ ..++..+...|...|++++|...++...+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998875311 112 557888889999999999999999887653111 11 567888999999999999
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCccc
Q 011201 453 EGENLVNEMLDE----GFIP-DLATYNSYMDGLSNARKSVR 488 (491)
Q Consensus 453 ~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~ 488 (491)
+|.+.+++..+. +..+ ...++..+...+...|+..+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987653 2111 24567778888888887644
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.2e-13 Score=132.53 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLID----GRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD----R-VKPDV 225 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~ 225 (491)
.++..+...|...|++++|+..|++..+... ......++..+...|...|++++|.+.|++..+. + .....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 4678889999999999999999998876411 1234577889999999999999999999987653 1 11134
Q ss_pred hhHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 011201 226 VTFNILISGFCRNKK-----------------FDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMA 283 (491)
Q Consensus 226 ~~~~~li~~~~~~~~-----------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 283 (491)
.++..+...|...|+ +++|++.+++..+. +-.+ ...++..+...|...|++++|++.+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 577888899999999 88898888876542 1111 2346667777778888888888888
Q ss_pred HHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 284 YEMIELGCE-FS----SVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 284 ~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
++..+.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 776643211 01 1244555555666666666666665544
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=5.5e-13 Score=129.23 Aligned_cols=314 Identities=10% Similarity=-0.025 Sum_probs=148.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCCCCCHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRM---NDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~ 191 (491)
+...+.+.|++++|..+|+.....+.. .++..+...|...|+. ++|+..|++..+. +..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~-------------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~ 70 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS-------------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPR 70 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-------------TGGGTCC---------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHH
Confidence 566777889999999999888765422 2233444555556666 7888888777642 556
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCC-------
Q 011201 192 IYNVLINGFVKCR-----EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF---DLALGLFREMREKGC------- 256 (491)
Q Consensus 192 ~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~------- 256 (491)
.+..|...+...+ +.++|.+.|++..+.|. ...+..|...|...+.. .++.+.+.+....|.
T Consensus 71 A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~L 147 (452)
T 3e4b_A 71 AQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQ 147 (452)
T ss_dssp CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666555544 67788888887777652 23455555555444332 223333333332221
Q ss_pred -------------------------CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 257 -------------------------NPNVVSFNTLIRGFFGER---KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 257 -------------------------~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
..+...+..|...|...| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCC
Confidence 112224555555555555 555555555555555422 333333444444333
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 011201 309 ----GRVLKACELVIDFSRRGVLPKDFDYFGLVEK-L--CGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR-- 379 (491)
Q Consensus 309 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 379 (491)
+++++|.++|+... .| +...+..+... | ...++.++|.+.|++..+.| +...+..|...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 45556666665554 22 22334444443 2 34555666666666655554 4445555554444 33
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 011201 380 ---KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----E 448 (491)
Q Consensus 380 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~ 448 (491)
+.++|+++|++.. .| +...+..+...|.. ..+.++|..+++...+.| +......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCC
Confidence 5556666655554 22 34444444444443 225556666666555544 23333444444443 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011201 449 NRRKEGENLVNEMLDEG 465 (491)
Q Consensus 449 g~~~~A~~~~~~m~~~~ 465 (491)
.+.++|..+|+...+.|
T Consensus 372 ~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 35556666666665554
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=4e-13 Score=124.56 Aligned_cols=276 Identities=16% Similarity=0.082 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CChh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRD----RVK-PDVV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~ 226 (491)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...|...|++++|.+.+++..+. +.. ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44555677778888888888888877763 222 356777777888888888888888775432 111 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCC--------------------HHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGC-NPN----VVSFNTLIRGFFGERK--------------------FDEGVN 281 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~ 281 (491)
.+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 555666666667777777776666544310 011 2244555555555555 555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-
Q 011201 282 MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK- 359 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 359 (491)
.+++..+.. ...+. ......+..+...+...|++++|.+.+++..+.
T Consensus 165 ~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 165 LYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 444433210 00000 001223455555566666666666666655432
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 011201 360 ---GN-LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI-LPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTK- 429 (491)
Q Consensus 360 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 429 (491)
+. ......+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|...++...+.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 10 00123666777778888888888888877665310 011 456677777888888888888888776543
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 430 ---GLD-PDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 430 ---g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+.. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 110 11346777888899999999999999988754
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.4e-12 Score=120.85 Aligned_cols=244 Identities=15% Similarity=0.032 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLI---DG-RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD---- 224 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~---- 224 (491)
..++..+...+...|++++|+..+++..+.. +. .....++..+...|...|++++|.+.+++..+.... .+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 3577788999999999999999999876541 11 123567888999999999999999999998874211 12
Q ss_pred hhhHHHHHHHHHhcCC--------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHH
Q 011201 225 VVTFNILISGFCRNKK--------------------FDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a 279 (491)
..++..+...+...|+ +++|.+.+++.... +..+ ....+..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3377888889999999 88888888876542 1111 133566666777777777777
Q ss_pred HHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 280 VNMAYEMIELGCE-----FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 280 ~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
.+.+++..+.... ....++..+...+...|++++|...+++..+....
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------- 255 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--------------------------- 255 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------------------
Confidence 7777766543100 01124445555555555555555555544322100
Q ss_pred HHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 355 ELWKKGNL-PSVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GIL-PDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 355 ~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
.+.. ....++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+
T Consensus 256 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 256 ----LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0000 01334445555555666666666665555432 100 0123455555666666666666666666554
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.6e-12 Score=123.40 Aligned_cols=298 Identities=8% Similarity=-0.060 Sum_probs=208.6
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCC---CCCHHHHHHHHHHH--HhcCCHHHHH-----------HHHHHHhhCCCCCC--
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDG---RPSVSIYNVLINGF--VKCREFDKAL-----------GFYDRMVRDRVKPD-- 224 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~--~~~~~~~~A~-----------~~~~~m~~~~~~p~-- 224 (491)
.+.+.+++++|..+++++.+..+. .++...|-.++..- .-.+.++.+. +.++.+.......+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 456799999999999998775322 23334444444321 1223344444 66666543211101
Q ss_pred --hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-C---
Q 011201 225 --VVTFNILISGFCRNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-F--- 293 (491)
Q Consensus 225 --~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~--- 293 (491)
...+......+...|++++|++.|++..+. +-.+ ...+|..+...|...|++++|++.+++..+.... .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 011222556678899999999999998764 1111 2467888999999999999999999988754211 1
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CC-
Q 011201 294 --SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL-P----KDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GN- 361 (491)
Q Consensus 294 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~- 361 (491)
...+++.+...|...|++++|...+++..+.... . ...++..+...|...|++++|.+.+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 2357788889999999999999999987754211 1 1246888999999999999999999998772 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-
Q 011201 362 LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPDSVTFNCLLEDLCDVGR---TVDADRLRLLASTKGLDP- 433 (491)
Q Consensus 362 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~g~~p- 433 (491)
.....++..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..+++.. +..+
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHH
Confidence 334677888999999999999999999988764 111112335667777888888 67777776654 2223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
....+..+...|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 245677888999999999999999999875
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=5e-11 Score=109.39 Aligned_cols=217 Identities=7% Similarity=-0.019 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhC-CCCCChhhHHHHHHHH
Q 011201 171 NDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK-------CREF-------DKALGFYDRMVRD-RVKPDVVTFNILISGF 235 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~~~m~~~-~~~p~~~~~~~li~~~ 235 (491)
++|+.+|++..+.. +.+...|..++..+.. .|++ ++|..+|++..+. . +-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 57778888877753 4567777777777653 4664 6777777776652 2 12445667777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVV-SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL-CNEGRVLK 313 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~~~~ 313 (491)
.+.|++++|.++|++..+.... +.. .|..++..+.+.|++++|..+|++..+.... +...|....... ...|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777664221 222 6666666666677777777777776654321 223332222221 12455666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG-NLP--SVIACTTLIEGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 390 (491)
|..+|+...+.... +...+..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666555544222 34445555555555555555555555555532 122 244455555555555555555555555
Q ss_pred HHH
Q 011201 391 MLK 393 (491)
Q Consensus 391 m~~ 393 (491)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.6e-11 Score=103.38 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.+.+......... +...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678888888888888888888888888763 456778888888888888888888888887665433 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+...++++.|.+.+.+..+.... +...+..+...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 788888888888888887776433 5677777888888888888888888887776533 56677777777778888888
Q ss_pred HHHHHHHHHhC
Q 011201 314 ACELVIDFSRR 324 (491)
Q Consensus 314 a~~~~~~~~~~ 324 (491)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88877777664
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=7.1e-11 Score=108.37 Aligned_cols=218 Identities=9% Similarity=0.029 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 011201 207 DKALGFYDRMVRDRVKPDVVTFNILISGFC-------RNKKF-------DLALGLFREMREK-GCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 271 (491)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++..+. ... +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 67778888877643 226667777776665 35775 8888888888873 222 5567888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HcCCCHhHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSV-TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKL-CGEGNAGIA 349 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a 349 (491)
+.|++++|.++|+++.+.... +.. +|..++..+.+.|++++|..+|+...+.+.. +...|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888874322 233 6777888888888888888888888776432 333343333332 235778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG-ILP--DSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
.++|++..+.... +...|..++..+.+.|+.++|..+|++.++.. +.| ....|..++....+.|+.++|..+++.+
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777765433 56777777777777788888888888777752 344 3556777777777777777777777777
Q ss_pred HHC
Q 011201 427 STK 429 (491)
Q Consensus 427 ~~~ 429 (491)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=7e-12 Score=121.48 Aligned_cols=337 Identities=13% Similarity=0.039 Sum_probs=221.3
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLASSY-----RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV 165 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (491)
.|+..|..+... +...+..+...+...+ ++++|...+++....+.. .++..+...|.
T Consensus 56 ~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-------------~A~~~Lg~~y~ 117 (452)
T 3e4b_A 56 QAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-------------NTLIPLAMLYL 117 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHH
Confidence 345555554432 3445555555444444 667777777777765432 24666677777
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---Chh
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK---KFD 242 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~ 242 (491)
..+..+++.+.++.+.+... ..+...+..|...|...+.++++.+....+.+.-...+...+..|...|.+.| +.+
T Consensus 118 ~~~~~~~~~~a~~~~~~a~~-~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 118 QYPHSFPNVNAQQQISQWQA-AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp HCGGGCTTCCHHHHHHHHHH-HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHH
Confidence 66654444333333332210 12455667777778777755544444333322212224558888999999999 999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHH
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGE----RKFDEGVNMAYEMIELGCEFSSVTCEILVDG-L--CNEGRVLKAC 315 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~ 315 (491)
+|++.|++..+.|.. +...+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|.
T Consensus 197 ~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 999999999998754 666667777777655 79999999999987 44 55667777766 4 4689999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCC-----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEG-----NAGIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASG 386 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 386 (491)
++|+...+.| +...+..+...|. .| +.++|.+.|++.. .| +...+..|...|.. ..+.++|..
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999999887 5566777777777 55 9999999999988 55 67777778777766 348999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+|++..+.|. ......|...|.. ..+.++|..+++...+.|. ++.......+......++.++|.++.++..
T Consensus 344 ~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 344 HLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999998763 3344555555553 4589999999999999873 233333333333344567778888887765
Q ss_pred H
Q 011201 463 D 463 (491)
Q Consensus 463 ~ 463 (491)
+
T Consensus 420 ~ 420 (452)
T 3e4b_A 420 A 420 (452)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.7e-11 Score=103.15 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
|..+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|+..+......... +...+..+...+..
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence 333333333344444444444433333221 3333333344444444444444444433333211 22333333333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.++++.+...+....+.... +...+..+...|.+.|++++|++.|++..+.... +...|..+...|.+.|++++|++.
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444333332211 2233333444444444444444444444433222 334444444444444444444444
Q ss_pred HHHHHH
Q 011201 388 MEKMLK 393 (491)
Q Consensus 388 ~~~m~~ 393 (491)
|++.++
T Consensus 164 ~~~al~ 169 (184)
T 3vtx_A 164 FKKALE 169 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=8.5e-13 Score=121.14 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=134.4
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI------DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD---- 219 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 219 (491)
.|....++..+...+...|++++|+.+|+++.+.. .......++..+...|...|++++|.+.+++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999987731 11234677888999999999999999999987653
Q ss_pred --CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 220 --RV-KPDVVTFNILISGFCRNKKFDLALGLFREMREK------GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 220 --~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+- ......+..+...|...|++++|.+.|+++.+. +-.| ....+..+...+...|++++|+++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 223567788888999999999999999988764 2222 3456778888899999999999999888764
Q ss_pred ------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 290 ------GCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 290 ------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
+..+ ...++..+...|...|++++|.+.++++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 235677778888888888888888887765
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=1.4e-11 Score=116.85 Aligned_cols=298 Identities=8% Similarity=-0.038 Sum_probs=207.2
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHH--HHHHHcCChhHHH-----------HHHHHHHHhcC
Q 011201 119 LASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAV--NAFVKANRMNDGL-----------LAFEAMRKLID 185 (491)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~-----------~~~~~~~~~~~ 185 (491)
+.+.+++++|..+++++...-.... .......|..++ +...-.+.++.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~------~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~- 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQME------EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ- 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-
Confidence 4457899999999998865321110 011122233332 2222334444444 6777765531
Q ss_pred CCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 186 GRPSVS------IYNVLINGFVKCREFDKALGFYDRMVRDRV-KP----DVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 186 ~~~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
.+.. .+......+...|++++|.+.|++..+.-. .+ ...+|..+...|...|++++|.+.+++..+.
T Consensus 95 --~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 95 --ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1222 222356778889999999999999876411 12 2457888999999999999999999987754
Q ss_pred C--CC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 255 G--CN----PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-FS----SVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 255 g--~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
. .. ....+++.+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|.+.+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11 12457888899999999999999999988754211 11 24778899999999999999999998876
Q ss_pred C----CC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 011201 324 R----GV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPSVIACTTLIEGLRRLRK---GVEASGLMEKM 391 (491)
Q Consensus 324 ~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m 391 (491)
. +. .....++..+...|.+.|++++|.+.+++..+. +.......+..+...+...|+ .++|+.++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 2 22 334667889999999999999999999987653 111123335667778888888 77777777665
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 392 LKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 392 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
+..++ ...+..+...|...|++++|...++...+
T Consensus 333 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 ---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22333 44677888899999999999999998765
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=8e-13 Score=121.32 Aligned_cols=243 Identities=13% Similarity=0.059 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRD-------RVKPDVVTFNILISGFCRNKKFDLALGLFREMREK------G 255 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 255 (491)
+..++..+...+...|++++|..+|+++.+. ........+..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777888888888888888888877652 11223455666777777777777777777776553 1
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 256 CNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL------GC-EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 256 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
-.+ ...++..+...|...|++++|.+.++++.+. +. .....++..+...+...|++++|.++++.+.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 111 2445666666666677777777666666543 11 1112333444444444455555554444443320
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCC
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWKK--GNLP-SVIACTTLIEGLRRLRKGVEASGLMEKMLKE-------GIL 397 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~ 397 (491)
... +..| ....+..+...|...|++++|.+.++++.+. ...
T Consensus 184 -----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 184 -----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 1111 2334555555666666666666666655542 011
Q ss_pred CC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 398 PD-------SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 398 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
+. ...+..+...+...+.+.++...++...... ..+..+|..+..+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 1112222233344455556666665555432 23456788888899999999999999988764
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=7.5e-12 Score=122.08 Aligned_cols=219 Identities=8% Similarity=-0.144 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011201 206 FDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF-DLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAY 284 (491)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (491)
++++.+.+++..... ..+...|..+...+...|++ ++|++.|++..+.... +...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555444332 12445555555555555666 6666666555554322 34555555555555555555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC
Q 011201 285 EMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPS 364 (491)
Q Consensus 285 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 364 (491)
+..+.. |+...+..+...|...+.-. ...+.|++++|.+.+++..+.... +
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~--------------------------~~~~~g~~~~A~~~~~~al~~~p~-~ 212 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDS--------------------------GDEHSRHVMDSVRQAKLAVQMDVL-D 212 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSC--------------------------HHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCC--------------------------hhhhhhhHHHHHHHHHHHHHhCCC-C
Confidence 555432 33344444444444440000 000005555555555555544322 4
Q ss_pred HHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 365 VIACTTLIEGLRRL--------RKGVEASGLMEKMLKEGILP----DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD 432 (491)
Q Consensus 365 ~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 432 (491)
...|..+..+|... |++++|++.|++..+. .| +...|..+..+|...|++++|...+++..+.. +
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 289 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P 289 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 45555555555555 5566666666666553 23 45556666666666666666666666665542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLV 458 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~ 458 (491)
-+...+..+..++...|++++|++.+
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455556666666666666666544
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=5.7e-12 Score=122.92 Aligned_cols=215 Identities=13% Similarity=-0.025 Sum_probs=173.6
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREF-DKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 247 (491)
++++++..++..... .+.+...+..+...|...|++ ++|++.|++..+.... +...|..+...|.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 366777777776653 245788999999999999999 9999999998876432 578999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CC
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFGE---------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE--------GR 310 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------g~ 310 (491)
|++..+. .|+...+..+...+... |++++|++.|++..+.... +...+..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 9999986 46778899999999999 9999999999999887543 677888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 311 VLKACELVIDFSRRGVL--PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLM 388 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 388 (491)
+++|.+.|+...+.... -+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|++.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888876431 36667788888888888888888888888776543 5667777777777778777777655
Q ss_pred HH
Q 011201 389 EK 390 (491)
Q Consensus 389 ~~ 390 (491)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=2.2e-11 Score=123.65 Aligned_cols=170 Identities=10% Similarity=0.021 Sum_probs=150.4
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
++|....+++.+...|.+.|++++|++.|++..+.. +-+..+|+.|..+|.+.|++++|++.|++..+.... +...|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 568889999999999999999999999999999873 456889999999999999999999999998876433 67899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
+.+...|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +...+..+...|...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhc
Confidence 99999999999999999999999987544 6889999999999999999999999999987643 678899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 011201 309 GRVLKACELVIDFSR 323 (491)
Q Consensus 309 g~~~~a~~~~~~~~~ 323 (491)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999888877653
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=6.2e-11 Score=112.21 Aligned_cols=305 Identities=10% Similarity=-0.003 Sum_probs=207.4
Q ss_pred HHHHHHHHHH--HHcCChhHHHHHHHHHHHhcCC---CCCHHHHHHHHHHH--HhcCCHHHHH---------HHHHHHhh
Q 011201 155 RIFHFAVNAF--VKANRMNDGLLAFEAMRKLIDG---RPSVSIYNVLINGF--VKCREFDKAL---------GFYDRMVR 218 (491)
Q Consensus 155 ~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~--~~~~~~~~A~---------~~~~~m~~ 218 (491)
.+-..+-..| ...+++++|..+++++.+.... ..++..|-.|+..- .-.+.+..+. +.++.+..
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 4444455555 7899999999999998764322 22344444444321 1112222222 55555433
Q ss_pred CCCCCC-h---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 219 DRVKPD-V---VTFNILISGFCRNKKFDLALGLFREMREKGC-NPN----VVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 219 ~~~~p~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.....+ . ..|......+...|++++|+..|++..+... .++ ..++..+...|...|++++|+..+++..+.
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 170 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 211101 1 1223344556789999999999999876411 122 457888899999999999999999988753
Q ss_pred CC-----C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 290 GC-----E-FSSVTCEILVDGLCNEGRVLKACELVIDFSRR----GVL-PKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 290 ~~-----~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
.. . ....+++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 1 12456778889999999999999999887653 111 1234678889999999999999999999877
Q ss_pred -----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 011201 359 -----KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI---LPD-SVTFNCLLEDLCDVGR---TVDADRLRLLA 426 (491)
Q Consensus 359 -----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~ 426 (491)
.... ...++..+...|.+.|++++|...+++..+... .+. ...+..+...+...++ +++|..+++.
T Consensus 251 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~- 328 (378)
T 3q15_A 251 VSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK- 328 (378)
T ss_dssp HHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-
T ss_pred HHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-
Confidence 4333 367888899999999999999999999887521 122 3445556566667777 6777766665
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 427 STKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 427 ~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.+..++ ...+..+...|...|++++|.+.|++..+
T Consensus 329 --~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 --KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 322222 34667788999999999999999998864
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=2.8e-10 Score=107.46 Aligned_cols=301 Identities=11% Similarity=-0.002 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCh----
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPDV---- 225 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~---- 225 (491)
.+.......+...|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++...... ..+.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3445556677788999999999998877532 1222 2566777888888999999999888765311 1122
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC----C
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREK----GCN--P-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF----S 294 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~ 294 (491)
.++..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+..... .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 23556677788889999998888887653 221 2 23455667778888888888888888877653221 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHH-----HHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CH
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD-FDYF-----GLVEKLCGEGNAGIALEVVDELWKKGNLP---SV 365 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~ 365 (491)
..++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++........ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 245666777778888888888888877643211111 1111 22344667788888888877765533211 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPDS-VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHI 440 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 440 (491)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...... +. ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----cc
Confidence 34556667777778888888777776543 211122 244555566677777777777777766642 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+..+...| +....+++.+...
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcc--HHHHHHHHHHHhC
Confidence 223344444 5666666666644
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=5.4e-10 Score=105.50 Aligned_cols=275 Identities=9% Similarity=-0.038 Sum_probs=197.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH--
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-- 190 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 190 (491)
......+...|++++|...+++........+ ......++..+...+...|++++|...+++.........+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGW------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3445566778999999999999876542100 01122356777888999999999999999877642212232
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----
Q 011201 191 --SIYNVLINGFVKCREFDKALGFYDRMVRD----RVK--P-DVVTFNILISGFCRNKKFDLALGLFREMREKGCN---- 257 (491)
Q Consensus 191 --~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~---- 257 (491)
.+++.+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|.+.+++..+....
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 34677888899999999999999987653 221 2 2345667888899999999999999998765321
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 011201 258 PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-VTCE-----ILVDGLCNEGRVLKACELVIDFSRRGVLPK-- 329 (491)
Q Consensus 258 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 329 (491)
....++..+...+...|++++|...+++..+....++. ..+. ..+..+...|++++|...++..........
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 12456788888999999999999999998754222111 1121 233457789999999999998876543211
Q ss_pred -HhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 330 -DFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPSV-IACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 330 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
...+..+...+...|++++|.+.+++.... |..++. ..+..+...+...|+.++|...+++...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 224567788899999999999999987653 211122 3566677888899999999999988765
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=3.7e-09 Score=106.19 Aligned_cols=370 Identities=8% Similarity=-0.015 Sum_probs=232.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHH
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR---MNDGLLAFEAMRK 182 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 182 (491)
+.|..+|..++..+.+.+.++.+..+++.+... +|.....|...+..-.+.|. ++.+..+|++...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-----------fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-----------FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 357778888888888888888888888888764 24445677777777777777 8888888888876
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CCC-hhhHHHHHHHHHh---------cCChh
Q 011201 183 LIDGRPSVSIYNVLINGFVKCREF--------DKALGFYDRMVR-DRV-KPD-VVTFNILISGFCR---------NKKFD 242 (491)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~~~~~ 242 (491)
.....|++..|..-+....+.++. +.+.++|+.... .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 432237777777777666555443 334466666443 355 443 3566655554321 23455
Q ss_pred HHHHHHHHHHHcCCCCCHHHH-----------------------------------------------------------
Q 011201 243 LALGLFREMREKGCNPNVVSF----------------------------------------------------------- 263 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~----------------------------------------------------------- 263 (491)
.+.++|+.........-..+|
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 666666666542111011122
Q ss_pred --------------HHHHHHHHcCC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHH
Q 011201 264 --------------NTLIRGFFGER-------KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC-ELVIDF 321 (491)
Q Consensus 264 --------------~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~ 321 (491)
...+.---..+ ..+.+..+|++....- ..+...|...+..+...|+.++|. ++++..
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11111110000 0111223344333321 123444555555566677878886 888888
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC---------CC------------CHHHHHHHHHHHHhcCC
Q 011201 322 SRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN---------LP------------SVIACTTLIEGLRRLRK 380 (491)
Q Consensus 322 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~------------~~~~~~~li~~~~~~g~ 380 (491)
.... +.+...+...+...-+.|+++.|.++|+.+..... .| ....|...+....+.|.
T Consensus 371 i~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 371 QQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 7643 33566677788888889999999999998876310 12 13367777887788899
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011201 381 GVEASGLMEKMLKE-GILPDSVTFNCLLEDLCDV-GRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLV 458 (491)
Q Consensus 381 ~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 458 (491)
.+.|..+|.+..+. +. .....|...+..-.+. ++.+.|..+|+...+. ++-+...|...++.....|+.+.|..+|
T Consensus 450 l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998875 21 1233343333322333 4589999999988876 4456777788888888889999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCccccc
Q 011201 459 NEMLDEGFIP--DLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 459 ~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.+.....+ ....|..+++--.+.|+.+.+.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998653221 3467888888888888887654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.9e-10 Score=96.33 Aligned_cols=166 Identities=17% Similarity=0.113 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 3556677777888888888888888776642 34677777888888888888888888888766532 25667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|.++++++.+... .+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 777888888888888877765332 566777777777777888888887777776542 245666677777777777777
Q ss_pred HHHHHHHHHhC
Q 011201 314 ACELVIDFSRR 324 (491)
Q Consensus 314 a~~~~~~~~~~ 324 (491)
|.+.++...+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777766543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=4.4e-10 Score=106.32 Aligned_cols=312 Identities=10% Similarity=0.016 Sum_probs=209.5
Q ss_pred CCHHHHHHHHHHH--HhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH--HHHcCChhHHH--------
Q 011201 107 HDHTTFLFIVRSL--ASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA--FVKANRMNDGL-------- 174 (491)
Q Consensus 107 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~-------- 174 (491)
|+..+-..+-..+ .+.+++++|..+++++........ .......|..++.. ..-.+.++.+.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~------~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~ 81 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME------EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBC------CCHHHHHHHHHHHHHHHHHHHTCCC--------CH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 3444445555555 678999999999998765321110 11112233333222 11123333333
Q ss_pred -HHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCChhHHH
Q 011201 175 -LAFEAMRKLIDGRPS---VSIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPD----VVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 175 -~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~ 245 (491)
+.++.+........+ ...+......+...|++++|...|++..+... .++ ..++..+...|...|+++.|.
T Consensus 82 ~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 666666542100011 11233445667789999999999999876411 122 457788899999999999999
Q ss_pred HHHHHHHHc----C-CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHH
Q 011201 246 GLFREMREK----G-CNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL----GCE-FSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 246 ~~~~~m~~~----g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a 314 (491)
..+++..+. + ..+ ...+++.+...|...|++++|++.+++..+. +.. ....++..+...|...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999987653 1 111 2457888999999999999999999988753 111 1235677888999999999999
Q ss_pred HHHHHHHHh-----CCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC---hH
Q 011201 315 CELVIDFSR-----RGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN----LPSVIACTTLIEGLRRLRK---GV 382 (491)
Q Consensus 315 ~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~---~~ 382 (491)
.+.+++..+ .... ...++..+...|.+.|++++|.+.+++..+... ......+..+...+...++ ..
T Consensus 242 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999998876 4333 367788899999999999999999999887421 2223455666666777787 77
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
+|+.++++ .+..++ ...+..+...|...|++++|...++...+
T Consensus 321 ~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 321 DLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777765 222222 34566788899999999999999988764
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=3.5e-10 Score=94.74 Aligned_cols=166 Identities=15% Similarity=0.058 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+..+...+...|++++|...++.+.... |....++..+...+...|++++|+..++++.+.. +.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDN 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 356677888999999999999998876543 3446788899999999999999999999998863 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.... +...+..+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 153 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFS 153 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHH
Confidence 88899999999999999999999999887642 36788889999999999999999999999887533 67889999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 011201 270 FFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+...|++++|.+.++++.+..
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999987653
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.7e-10 Score=117.14 Aligned_cols=167 Identities=12% Similarity=-0.019 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
-+..+|+.|...|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.... +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 35788999999999999999999999998876433 5778999999999999999999999999887544 678999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
.+|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++.++.... +...+..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999987643 6788999999999999999999999999887644 5677889999999999999
Q ss_pred HHHHHHHHHHH
Q 011201 348 IALEVVDELWK 358 (491)
Q Consensus 348 ~a~~~~~~m~~ 358 (491)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.5e-10 Score=104.32 Aligned_cols=235 Identities=10% Similarity=0.014 Sum_probs=158.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCCCHHHHH
Q 011201 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI------DGRPSVSIYN 194 (491)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 194 (491)
..|++++|...+++..+...... -...|....++..+...|...|++++|+..|+++.+.. ..+....++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34566666666655543210000 00124556788999999999999999999999987652 1223467899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CH
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRD------RV-KPDVVTFNILISGFCRNKKFDLALGLFREMREK------GCNP-NV 260 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~ 260 (491)
.+...|...|++++|.+.|++..+. .- .....++..+...|...|++++|.+.|++..+. +-.| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999987664 11 123567888999999999999999999998765 1122 35
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCCCCh-hhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCC
Q 011201 261 VSFNTLIRGFFGERKFDEGVNMAYEMIEL-------GCEFSS-VTCEILVDGLCNEGRVL------KACELVIDFSRRGV 326 (491)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~-~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~ 326 (491)
.++..+...|...|++++|.+++++..+. ...+.. ..+..+...+...+... .+...++.... ..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DS 248 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CC
Confidence 67888999999999999999999988764 122222 23333333333333222 22222211111 11
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
.....++..+...|...|++++|.+.+++..+.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223456888999999999999999999987653
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=9.4e-11 Score=105.62 Aligned_cols=203 Identities=13% Similarity=0.023 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 011201 261 VSFNTLIRGFFGERKFDEGVNMAYEMIEL------GC-EFSSVTCEILVDGLCNEGRVLKACELVIDFSRR------G-V 326 (491)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~ 326 (491)
.++..+...|...|++++|+..++++.+. +- .....++..+...|...|++++|.+.+++..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555544432 11 112334445555555555555555555554432 1 1
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK------GNLP-SVIACTTLIEGLRRLRKGVEASGLMEKMLKE----- 394 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 394 (491)
......+..+...|...|++++|.+.+++..+. +..| ...++..+...|...|++++|.+++++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 112345566666666667777666666666553 1111 3456677777777888888888888777653
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH---HHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 395 --GILPD-SVTFNCLLEDLCDVGRTVDADRLRLLA---STKG--LDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 395 --~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
...+. ...+..+...+...+....+..+.... ...+ ......++..+...|...|++++|.+++++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 222333333333333322222221111 1111 112345678888999999999999999998874
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=2.6e-09 Score=93.05 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
|...+......+...|++++|++.|++..+....++...+..+..++...|++++|++.++...+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 668888899999999999999999999998875467777877999999999999999999999987654 5677889999
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSV-------IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLE 408 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 408 (491)
.|...|++++|.+.+++..+.... +. ..|..+...+...|++++|++.|++.++. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999887543 44 45777888889999999999999999874 565 456666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYM 477 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 477 (491)
+|...| ..+++.+...+ ..+...|.... ....|.+++|+..+++..+. .|+......++
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 665443 44455555553 23455554443 33457789999999999865 46554444333
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.3e-07 Score=94.93 Aligned_cols=373 Identities=10% Similarity=0.021 Sum_probs=245.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYR---FSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK 166 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (491)
..+..+|+.+... ++.+...|...+..-.+.+. ++.+..+|++.+..... +.....|..-+....+
T Consensus 83 ~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~---------~~sv~LW~~Yl~f~~~ 151 (679)
T 4e6h_A 83 KQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG---------NNDLSLWLSYITYVRK 151 (679)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSC---------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHH
Confidence 4466777777654 56677788888888888888 99999999998775310 1335677666665555
Q ss_pred cCCh--------hHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhh
Q 011201 167 ANRM--------NDGLLAFEAMRKLIDG-RP-SVSIYNVLINGFVK---------CREFDKALGFYDRMVRDRVKPDVVT 227 (491)
Q Consensus 167 ~~~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~ 227 (491)
.++. +...++|+......|. .+ +...|...+..... .++++.+.++|++.+......-..+
T Consensus 152 ~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~ 231 (679)
T 4e6h_A 152 KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESM 231 (679)
T ss_dssp HSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHH
Confidence 5543 3345788887765555 44 45678777765442 3456777788877764211111112
Q ss_pred HH---HHHHH-----------------------H----------------------------------------------
Q 011201 228 FN---ILISG-----------------------F---------------------------------------------- 235 (491)
Q Consensus 228 ~~---~li~~-----------------------~---------------------------------------------- 235 (491)
|. .+... +
T Consensus 232 w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~f 311 (679)
T 4e6h_A 232 WQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRW 311 (679)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHH
Confidence 21 10000 0
Q ss_pred -HhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 236 -CRNK-------KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGV-NMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 236 -~~~~-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
-..+ ..+.+..+|++....-. -+...|...+.-+.+.|+.++|. ++|++....- +.+...+...+...-
T Consensus 312 Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 312 ESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 0000 01122334444443321 24556666666677788888996 9999998753 345666777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCC---------CC------------CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCC
Q 011201 307 NEGRVLKACELVIDFSRRGV---------LP------------KDFDYFGLVEKLCGEGNAGIALEVVDELWKK-GNLPS 364 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~ 364 (491)
+.|++++|.++|+.+.+... .| ...+|...++...+.|+.+.|.++|....+. +.. .
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~ 468 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-T 468 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-C
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-C
Confidence 99999999999999876410 12 1336788888888889999999999999876 211 2
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 011201 365 VIACTTLIEGLRRL-RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP--DGMTYHIL 441 (491)
Q Consensus 365 ~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l 441 (491)
...|...+..-.+. ++.+.|.++|+..++. ..-+...+...+......|+.+.|..+|+........+ ....|...
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33343333333343 4589999999999886 33356677788888888999999999999998864321 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 442 VSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDG 479 (491)
Q Consensus 442 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 479 (491)
+..-.+.|+.+.+.++.+++.+. .|+......+++-
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 88888999999999999999976 3554444444433
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=4.2e-09 Score=91.79 Aligned_cols=133 Identities=8% Similarity=0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
+..+......+.+.|++++|+..|++..+.. ..++...+..+..++...|++++|++.|++..+.... +...|..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 4556666666777777777777777766652 1145555555666666677777777777666654322 4455666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNV-------VSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.|.+.|++++|++.|++..+.... +. ..|..+...+...|++++|++.|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 666666666666666666654322 23 33445555555555666666665555543
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=7.2e-09 Score=81.40 Aligned_cols=130 Identities=15% Similarity=0.288 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
++..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.|+++...+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 45566777777788888888887777652 34566777777777777788888877777765432 2455666677777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.+.|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777665332 4566666777777777777777777766654
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=3e-09 Score=96.61 Aligned_cols=211 Identities=14% Similarity=0.059 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHH
Q 011201 205 EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK----GCNPN-VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 279 (491)
++++|.+.|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776654 55667777777777777766543 21111 34666677777777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC-CCHhHHHHHHHHHHH
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE-GNAGIALEVVDELWK 358 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 358 (491)
+..+++..+.. ...|+...+ ..++..+...|... |++++|++.|++..+
T Consensus 97 ~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 77776655421 111222111 12344455555554 666666666666554
Q ss_pred cCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 359 KGNLP-S----VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS------VTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 359 ~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
..... + ..+|+.+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21100 1 245666677777777777777777777764322111 145556666777777777777777665
Q ss_pred HCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011201 428 TKGLDPDG------MTYHILVSGYT--RENRRKEGENLVNEML 462 (491)
Q Consensus 428 ~~g~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 462 (491)
+. .|+. ..+..++.+|. ..+++++|++.|+++.
T Consensus 227 ~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 227 SE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 53 2221 12334455554 3466777777776664
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=6.2e-09 Score=94.49 Aligned_cols=163 Identities=8% Similarity=-0.085 Sum_probs=83.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhc---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----hhhHHH
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLI---DGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD----VVTFNI 230 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 230 (491)
....|...|++++|++.|++..+.. +..+ ...+|+.+..+|.+.|++++|+..|++..+.... .+ ..+++.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456777888888888887765542 1111 1456777777888888888887777766542100 01 234455
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChh------hH
Q 011201 231 LISGFCRN-KKFDLALGLFREMREKGCNP-N----VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSV------TC 298 (491)
Q Consensus 231 li~~~~~~-~~~~~A~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~ 298 (491)
+...|... |++++|++.|++..+..... + ..++..+...+.+.|++++|+..|++..+........ .+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 55555553 55555555555544321000 0 2234444555555555555555555554432221110 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 299 EILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
..+..++...|++++|...+++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444455555555444443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=8.9e-09 Score=80.88 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
+|..+...+...|++++|.++|+++.+.+. .+...+..+...+...|++++|.+.++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 455666667777777777777777665432 24556666666666777777777777776655322 4556666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
..|++++|.++++++.+.... +..++..+...+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666777766666666654322 345555555666666666666666655544
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=1.5e-08 Score=90.26 Aligned_cols=104 Identities=6% Similarity=-0.003 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+..+...+.+.|++++|...|+.+...... .+....++..+..+|.+.|++++|+..|+++.+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT--------HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 4456666777788888888888888888765321 12225677788888888888888888888888764222
Q ss_pred CC-HHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhC
Q 011201 188 PS-VSIYNVLINGFVK--------CREFDKALGFYDRMVRD 219 (491)
Q Consensus 188 ~~-~~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~ 219 (491)
+. ..++..+..++.. .|++++|.+.|+++.+.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 22 4567777777777 88888888888887765
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=7.5e-09 Score=92.25 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=82.0
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC-h
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS---VSIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPD-V 225 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~ 225 (491)
+.....+......+.+.|++++|+..|+++.+.. +.+ ..++..+..+|.+.|++++|...|++..+... .|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4446677788888999999999999999998864 223 67888899999999999999999999887532 112 3
Q ss_pred hhHHHHHHHHHh--------cCChhHHHHHHHHHHHcC
Q 011201 226 VTFNILISGFCR--------NKKFDLALGLFREMREKG 255 (491)
Q Consensus 226 ~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g 255 (491)
..+..+..++.+ .|++++|+..|+++.+..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 456677778888 899999999999988763
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=1.9e-07 Score=84.21 Aligned_cols=237 Identities=9% Similarity=0.010 Sum_probs=143.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR--EFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
+..+.....+...-++|+..++++.... +-+..+||.--..+...+ ++++++++++.+.....+ +..+|+.--..
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~i 112 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHH
Confidence 3333333334444578999999999874 456778998888888888 999999999998886543 55566554444
Q ss_pred H----Hhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 235 F----CRN---KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD--EGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 235 ~----~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
+ .+. +++++++++++++.+...+ |-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4 444 7888888888888887555 7778887777777778777 888888888877644 556666555544
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-H
Q 011201 306 CNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE-A 384 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a 384 (491)
.+.|.. . ....++++++.++++....+. |...|+.+-..+.+.|+..+ +
T Consensus 191 ~~l~~~----------------~-------------~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 191 FSKKHL----------------A-------------TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HSSGGG----------------C-------------CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGG
T ss_pred Hhcccc----------------c-------------hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHH
Confidence 444430 0 000134444444444444333 45555555444444444332 3
Q ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 385 SGLMEKMLKEG--ILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 385 ~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33433333221 112445555555555555666666666555554
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=3.4e-08 Score=88.25 Aligned_cols=216 Identities=9% Similarity=0.037 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
......++|...|++.... ...|....+..+...+ ..+ |+..|++....+ .++..++..+...+
T Consensus 47 ~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~ 110 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQ 110 (310)
T ss_dssp HHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3344567788877766420 1234444444433333 222 667777666554 34555556677777
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHh--
Q 011201 236 CRNKKFDLALGLFREMREKGC-NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-----SSVTCEILVDGLCN-- 307 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~-- 307 (491)
...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..++..
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHH
Confidence 777888888888877655543 125566777777777788888888888777665 23 24444445544222
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC-----C----CCCHHHHHHHHHHHH
Q 011201 308 --EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG-----N----LPSVIACTTLIEGLR 376 (491)
Q Consensus 308 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~----~~~~~~~~~li~~~~ 376 (491)
.+++++|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+.+.. . .-+..++..+|....
T Consensus 189 ~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL 266 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH
Confidence 236677777777765443 221222333335666666666666666544320 0 114444434444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLK 393 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~ 393 (491)
..|+ +|.+++.++.+
T Consensus 267 ~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 267 MQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HTTC--TTHHHHHHHHH
T ss_pred HhCh--HHHHHHHHHHH
Confidence 4454 56666666665
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=4.4e-08 Score=87.53 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=139.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
++-..-.|.+..++.-..++. ...+ ...--.+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 455556788888877333222 1122 23333455777777776531 11223333444333333 322
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC-EFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666777666554 33555556777777778888888888877765543 1245666677777777888888888887
Q ss_pred HHHhCCC---CCCHhhHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 320 DFSRRGV---LPKDFDYFGLVEKLC----GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 320 ~~~~~~~---~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
.|.+... ..+..+...+..++. ..++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766532 112444555554422 2236777777777775543 332233333446677777777777777655
Q ss_pred HCC-----C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 393 KEG-----I---LP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 393 ~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
+.- . .| |..++..++......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 420 0 12 34555455554455565 666777777664
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3e-07 Score=82.90 Aligned_cols=221 Identities=12% Similarity=0.033 Sum_probs=166.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN--RMNDGLLAFEAMRKLIDGRPSVSIYNVLING 199 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 199 (491)
....++|+.+.+.++... |....+++.-..++...| +++++++.++.+.... +.+..+|+.-...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-----------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~i 112 (306)
T 3dra_A 46 EEYSERALHITELGINEL-----------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLI 112 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-----------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHH
Confidence 344468999999887754 555678888888888888 9999999999999864 4566677776666
Q ss_pred H----Hhc---CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 200 F----VKC---REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD--LALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 200 ~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
+ ... +++++++++++.+.+...+ |-.+|+.-...+.+.|+++ ++++.++++.+.... |...|+.-...+
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 6 555 7899999999999987544 7778888777788888888 999999999998766 888998887777
Q ss_pred HcCCC------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHhhHHHHHHHHH
Q 011201 271 FGERK------FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK-ACELVIDFSRRG--VLPKDFDYFGLVEKLC 341 (491)
Q Consensus 271 ~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~ 341 (491)
.+.|+ ++++++.+++++...+. |...|+.+-..+.+.|+... +..+...+.+.+ -..+...+..+...|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 77776 88888888888887654 77888877777777776433 444555444332 1224556666666777
Q ss_pred cCCCHhHHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWK 358 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~ 358 (491)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 77777777777777665
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=5.3e-09 Score=87.06 Aligned_cols=162 Identities=7% Similarity=0.048 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG- 234 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~- 234 (491)
.+......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..... |+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 34566778889999999999999887753 4567888999999999999999999998876653 344333322211
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~ 313 (491)
+.+.++..+|++.+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12223334567777777765433 56777788888888888888888888887765432 34567777777778888888
Q ss_pred HHHHHHHHH
Q 011201 314 ACELVIDFS 322 (491)
Q Consensus 314 a~~~~~~~~ 322 (491)
|...|+..+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=4.8e-09 Score=106.94 Aligned_cols=154 Identities=12% Similarity=-0.048 Sum_probs=77.2
Q ss_pred HHcCChhHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 165 VKANRMNDGLLAFEAMR--------KLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
...|++++|++.+++.. +. .+.+...+..+...|.+.|++++|.+.|++..+.... +...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 44555555555555554 21 1233444555555555555555555555555443211 3445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+.|++++|++.|++..+.... +...|..+..++.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555544322 34455555555555555555 5555555544322 34445555555555555555555
Q ss_pred HHHHHHhC
Q 011201 317 LVIDFSRR 324 (491)
Q Consensus 317 ~~~~~~~~ 324 (491)
.|++..+.
T Consensus 556 ~~~~al~l 563 (681)
T 2pzi_A 556 TLDEVPPT 563 (681)
T ss_dssp HHHTSCTT
T ss_pred HHHhhccc
Confidence 55544433
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=3.1e-08 Score=84.82 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=27.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+..+|.+.|++++|+..|++..+.... +...+..+...+...|++++|...|+...+.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444444555555555555554444322 3444444444444555555555555444443
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=8.4e-08 Score=82.40 Aligned_cols=162 Identities=14% Similarity=-0.003 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC----CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG----NAGIALEVVDELWKKGNLPSVIACTT 370 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (491)
...+..+...|...+++++|.++|+...+.| +...+..+...|.. + +.++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444444444444444444433 22333344444444 3 4555555555554444 3444444
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 371 LIEGLRR----LRKGVEASGLMEKMLKEGIL-PDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHIL 441 (491)
Q Consensus 371 li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 441 (491)
|...|.. .+++++|+++|++..+.|.. -+...+..|...|.. .++.++|..+++...+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 5444444 45555666666555554311 014445555555555 55566666666666554 1233344555
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 011201 442 VSGYTRE-N-----RRKEGENLVNEMLDEG 465 (491)
Q Consensus 442 i~~~~~~-g-----~~~~A~~~~~~m~~~~ 465 (491)
...|... | +.++|.+.|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555432 2 5666666666666555
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=3.8e-08 Score=84.29 Aligned_cols=192 Identities=11% Similarity=-0.067 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011201 260 VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEK 339 (491)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 339 (491)
...+......+.+.|++++|+..|++..+.... +...+.. ...... ..........+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhhcch--------------hhhhHHHHHHHHHH
Confidence 344445556677788888888888887765321 1222221 000000 00011123347777
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh--
Q 011201 340 LCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRT-- 416 (491)
Q Consensus 340 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~-- 416 (491)
|.+.|++++|...|++..+..+. +...|..+...+...|++++|+..|++.++. .| +...+..+..+|...|..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHH
Confidence 78888888888888888876544 6777888888888888888888888888875 33 466677777666555432
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 417 VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 417 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
+.+...++.... ..|....+..+..++...|++++|.+.|++.+ .+.|+......+.+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHHHH
Confidence 333444444332 12222233344556666788888888888887 45677665554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=8e-09 Score=105.29 Aligned_cols=182 Identities=8% Similarity=-0.049 Sum_probs=144.3
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011201 120 ASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLING 199 (491)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 199 (491)
...+++++|...+++......... .-..|....++..+..++.+.|++++|++.|+++.+.. +.+...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~---~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDAD---GVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccc---ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence 677999999999999872110000 01124456788999999999999999999999999864 4578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011201 200 FVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 279 (491)
|...|++++|.+.|++..+.... +...|..+..++.+.|++++ ++.|++..+.... +...|..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998876433 67788999999999999999 9999999987544 678999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
++.|++..+.+.. +...+..+..++...++
T Consensus 554 ~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999998765422 35566666666655444
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=1.3e-07 Score=81.12 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----ChhHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK----KFDLALGL 247 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~A~~~ 247 (491)
+|++.|++..+. -+..++..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|++.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 456666666653 467777777777877888888888888877765 56667777777766 5 77888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCE-FSSVTCEILVDGLCN----EGRVLKACELV 318 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~ 318 (491)
|++..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .++.++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88777654 56667777777766 67777888877777766531 014566666666666 66777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcC-C-----CHhHHHHHHHHHHHcC
Q 011201 319 IDFSRRGVLPKDFDYFGLVEKLCGE-G-----NAGIALEVVDELWKKG 360 (491)
Q Consensus 319 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 360 (491)
+...+.+- +...+..|...|... | +.++|.+.|+...+.|
T Consensus 153 ~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77666511 223455555555432 2 6667777776666655
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=1.4e-07 Score=81.90 Aligned_cols=188 Identities=11% Similarity=0.002 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCh-hhHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PDV-VTFNIL 231 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~-~~~~~l 231 (491)
..+..+...+.+.|++++|+..|+++.+.....+. ..++..+..+|.+.|++++|++.|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 45666778899999999999999999886422222 467888899999999999999999999875332 111 134444
Q ss_pred HHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 011201 232 ISGFCR------------------NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 232 i~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 293 (491)
..++.+ .|++++|+..|+++.+.... +...+...... ..+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~------ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA------ 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH------
Confidence 444443 45677777777777665221 12222111100 00000000
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKGN 361 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 361 (491)
.....+...|.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.++|.+.++.+...++
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1113456677888888888888888887643321 24577788888888888888888888877653
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=4.3e-08 Score=88.63 Aligned_cols=162 Identities=8% Similarity=0.033 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI-LI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li 232 (491)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|.+.+++.... .|+...... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3444455555666666666666666665542 334555666666666666666666666655443 233322221 11
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~ 311 (491)
..+.+.++.++|.+.|++..+.... +...+..+...+...|++++|+..|.++.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2244455555566666655554332 45555566666666666666666666665543221 134455555555555555
Q ss_pred HHHHHHHHH
Q 011201 312 LKACELVID 320 (491)
Q Consensus 312 ~~a~~~~~~ 320 (491)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555544
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=2.4e-07 Score=80.41 Aligned_cols=191 Identities=9% Similarity=-0.007 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
...+..+...+.+.|++++|...|+.+...... .+....++..+..++.+.|++++|+..|+++.+.....+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF--------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345566778889999999999999999875321 123356788899999999999999999999998753333
Q ss_pred CH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 011201 189 SV-SIYNVLINGFVK------------------CREFDKALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 189 ~~-~~~~~li~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~ 248 (491)
.. .++..+..++.+ .|++++|...|+++.+.. |+. ..+...... ..+.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~ 143 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLK 143 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHH
Confidence 32 245555555543 578999999999998763 333 233221110 0011
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 249 REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 249 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
..+ ......+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 144 ~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 144 DRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 111 11223456677788888888888888887643211 24577788888888888888888888777654
Q ss_pred C
Q 011201 327 L 327 (491)
Q Consensus 327 ~ 327 (491)
.
T Consensus 216 ~ 216 (225)
T 2yhc_A 216 N 216 (225)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=1.2e-08 Score=82.35 Aligned_cols=139 Identities=10% Similarity=-0.034 Sum_probs=70.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011201 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGF 200 (491)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 200 (491)
..|++++|+..++...... |.....+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-----------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-----------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLY 75 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-----------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3345555555555543321 2333344455555666666666666666655542 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL-FREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+.|++++|...|++..+.... +...|..+...|.+.|++++|.+. +++..+.... +..+|......+...|
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666666655554221 344555555555555555544433 3444443222 3444444444444443
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=6.6e-09 Score=83.87 Aligned_cols=145 Identities=11% Similarity=-0.006 Sum_probs=100.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
...+...|++++|+..++...... +.+...+-.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556677888888887776531 223455667778888888888888888887775433 66778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM-AYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
+++|+..|++..+.... +..+|..+...|.+.|+++++.+. +++..+.... +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 88888888888776443 567788888888888887765554 4677665432 55666666666655553
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.2e-08 Score=83.28 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=20.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
.+.+.|++++|...|++..+.... +...+..+...+.+.|++++|+..+++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333444444444444433322111 2333444444444444444444444433
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=7.1e-08 Score=96.41 Aligned_cols=155 Identities=10% Similarity=-0.082 Sum_probs=99.1
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++++|++.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777776642 345677777777888888888888888877765322 56677777777888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 011201 247 LFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE---GRVLKACELVIDFSR 323 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 323 (491)
.|++..+.... +...|..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 88877766433 5667777777888888888888888877766432 456677777777777 788888888877776
Q ss_pred CCC
Q 011201 324 RGV 326 (491)
Q Consensus 324 ~~~ 326 (491)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 653
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=7.9e-08 Score=96.11 Aligned_cols=156 Identities=9% Similarity=-0.096 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 201 (491)
.|++++|...+++..+.. |....++..+...+.+.|++++|++.|++..+.. +.+...|..+...|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-----------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRW 68 (568)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 467888999998876543 4456889999999999999999999999999863 456889999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE---RKFDE 278 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~ 278 (491)
..|++++|.+.|++..+.... +...|..+...|.+.|++++|.+.|++..+.... +...+..+...+... |++++
T Consensus 69 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHH
Confidence 999999999999998876432 6778999999999999999999999999887543 678899999999999 99999
Q ss_pred HHHHHHHHHHcCCC
Q 011201 279 GVNMAYEMIELGCE 292 (491)
Q Consensus 279 a~~~~~~m~~~~~~ 292 (491)
|.+.+++..+.+..
T Consensus 147 A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 147 LSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999887643
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=1e-07 Score=87.17 Aligned_cols=227 Identities=12% Similarity=0.007 Sum_probs=123.8
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++++|.+++++..+... .. + +...+++++|...|.+. ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 5678888888888776431 11 0 11135566666655543 234555566666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHH
Q 011201 247 LFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC---EF--SSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 247 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
.|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..+.-. .+ -..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66655432 1000 123556666666666666666666665543210 11 12445556666666 77777777
Q ss_pred HHHHHHhCCCCC-----CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 011201 317 LVIDFSRRGVLP-----KDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPS-VIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 317 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~ 386 (491)
.+++..+..... ...++..+...|.+.|++++|++.|++.... +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666654321100 1345666777777777777777777776652 11111 2255556666667788888888
Q ss_pred HHHHHHHCCC--CCC--HHHHHHHHHHHHhcCChHHHHHH
Q 011201 387 LMEKMLKEGI--LPD--SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 387 ~~~~m~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
.|++.. ... ... ......++.++ ..|+.+.+..+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 887776 311 111 12344445544 56666666554
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=7.4e-08 Score=87.08 Aligned_cols=61 Identities=7% Similarity=-0.000 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 252 (491)
..+..+...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|.+.++++.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 33334444444444444444444444433211 33344444444444444444444444443
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=1.2e-05 Score=78.13 Aligned_cols=193 Identities=8% Similarity=-0.119 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011201 278 EGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELW 357 (491)
Q Consensus 278 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 357 (491)
.+..+|+++.... ..+...|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHH
Confidence 3455666665543 224555555555566666666666666666655 11221111 11111111111 22221
Q ss_pred HcC---------C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHH
Q 011201 358 KKG---------N---LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD-VGRTVDADRLRL 424 (491)
Q Consensus 358 ~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~ 424 (491)
+.- . ......|...+..+.+.+..+.|..+|++. +. ...+...|......-.. .++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 001233444455555556666666666666 21 11233333322211111 224666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 011201 425 LASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVR 488 (491)
Q Consensus 425 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 488 (491)
...+.. +-+...|...++...+.|+.+.|..+|+++. -....|...+.--...|+.+.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHH
Confidence 665532 2234445555555566666666666666651 134455555554444454443
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=3.7e-06 Score=76.65 Aligned_cols=166 Identities=6% Similarity=0.006 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
..+++.+-....+.+..++|+++++++.... +-+..+||.--..+...| .+++++++++.+.....+ +..+|+.-.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~ 130 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3444444444555566688999999999874 456788998888888888 599999999999987654 677787776
Q ss_pred HHHHhc-C-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 233 SGFCRN-K-KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD--------EGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 233 ~~~~~~-~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
..+.+. + ++++++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+...
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~ 208 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRW 208 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666665 6 889999999999987555 7778876655555555555 777777777766543 566666665
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHhC
Q 011201 303 DGLCNEGR-------VLKACELVIDFSRR 324 (491)
Q Consensus 303 ~~~~~~g~-------~~~a~~~~~~~~~~ 324 (491)
..+.+.+. ++++++.+++++..
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 55555554 34444444444444
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=4.7e-06 Score=75.96 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCCCH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN-RMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
+..+...+.+....++|+.+.+.++... |....+++.--..+...| .+++++++++.+.... +.+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-----------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny 123 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-----------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSY 123 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-----------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcH
Confidence 3444444445556678999999998754 555678888888888888 5999999999999853 5678
Q ss_pred HHHHHHHHHHHhc-C-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCH
Q 011201 191 SIYNVLINGFVKC-R-EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD--------LALGLFREMREKGCNPNV 260 (491)
Q Consensus 191 ~~~~~li~~~~~~-~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~ 260 (491)
.+|+.-..++.+. + ++++++++++.+.+.... |-..|+.-...+.+.|.++ ++++.++++.+.... |.
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~ 201 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NN 201 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CH
Confidence 8899888888877 7 899999999999987544 7777776666665556666 999999999998766 88
Q ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 261 VSFNTLIRGFFGERK-------FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 261 ~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
..|+.....+.+.++ ++++++.++++...... |...|+.+-..+.+.|..
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 999998888888876 68999999999887644 778887776666666553
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.3e-07 Score=72.14 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=90.4
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
..|.....+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++..+.... +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 457777888888999999999999999999988763 457888888999999999999999999988775432 56778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
..+..++...|++++|++.|++..+.... +...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 88888888888999998888888876432 44444444
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=3.2e-07 Score=83.20 Aligned_cols=167 Identities=11% Similarity=0.063 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----hh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD----VV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~ 226 (491)
.+...+..+...|++++|...+++..+.....++. ..+..+...+...+++++|++.|++..+.... .+ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34445778889999999999999988753333332 23445667777778999999999988774222 22 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCC-h
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREK-----GCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIEL----GCEFS-S 295 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~ 295 (491)
+++.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|++.+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6788888888999999999998887741 11111 236777888888888888888888876643 11111 4
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGR-VLKACELVIDFS 322 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 322 (491)
.+|..+..+|.+.|+ +++|.+.+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 566777777777774 577777776654
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=3.5e-07 Score=83.53 Aligned_cols=166 Identities=11% Similarity=0.020 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-Chh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRD----RVKP-DVV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~ 226 (491)
.|..+...|...|++++|+..|.+..+......+ ..+|+.+...|.+.|++++|++.|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555566777788888888888776554211111 345677777777777777777777765432 1000 123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCCC-hh
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNP-----NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----CEFS-SV 296 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~-~~ 296 (491)
+++.+...|.+ |++++|++.|++..+..... ...++..+...|.+.|++++|+..|++..+.. ..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 45555566655 66666666666654321000 02345555566666666666666666554421 1000 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33334444444555555555555554
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=5.2e-06 Score=75.09 Aligned_cols=26 Identities=12% Similarity=-0.088 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
+|..+...|.+.|++++|+..+++.+
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=1.1e-06 Score=75.34 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+..+...+...|++++|+..|++.. .++..+|..+...|.+.|++++|.+.|++..+... .+...|..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 3344555555666666666555542 23555555555556666666666666655544321 13445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 237 RNKKFDLALGLFREMREKGCNPNV----------------VSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+.|++++|++.|++..+.... +. ..+..+..+|.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555555544211 11 34444444555555555555555554443
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=8.2e-07 Score=76.01 Aligned_cols=146 Identities=10% Similarity=-0.066 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
..+..+...+...|++++|.+.|++.. .|+...|..+...+.+.|++++|++.|++..+.... +...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345667788889999999999998774 568889999999999999999999999999887533 678999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEF---------------SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (491)
...|++++|++.|++..+..... ....+..+..+|.+.|++++|.+.++...+.........+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 99999999999999998854321 126788889999999999999999999998765544444555
Q ss_pred HHHHHH
Q 011201 336 LVEKLC 341 (491)
Q Consensus 336 li~~~~ 341 (491)
.+..+.
T Consensus 162 a~~~~~ 167 (213)
T 1hh8_A 162 AMECVW 167 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=8.8e-07 Score=72.27 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3556677778888888888888888887753 34677788888888888888888888888766532 25667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHcCCCHHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNT--LIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 287 (491)
++.+.|++++|.+.|++..+.... +...+.. +...+...|++++|++.+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777888888888888877765332 3444433 3333556677777777766543
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=4.5e-06 Score=75.48 Aligned_cols=164 Identities=7% Similarity=-0.053 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--Hhh
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-----VTCEILVDGLCNEGRVLKACELVIDFSRRGVL---PK--DFD 332 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~ 332 (491)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...++...+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455555666666666666555543221110 11222334445555666666666555432111 11 224
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHH---cCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWK---KGN-LP--SVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GILP-DSV 401 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~---~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 401 (491)
++.+...|...|++++|.+.+++..+ ... .+ ...+|+.+...|...|++++|+..+++.++. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 55555555666666666666655542 110 00 1135555666666666666666666655432 1111 134
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHH
Q 011201 402 TFNCLLEDLCDVGRTVDA-DRLRLLA 426 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a-~~~~~~~ 426 (491)
+|..+..+|.+.|+.++| ...++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555666666666666 4444443
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.1e-06 Score=79.70 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CC--h
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK---PD--V 225 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p~--~ 225 (491)
..+...+..+...|++++|++.+++..+.....++ ...+..+...+...|++++|.+.+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788888888888888877765321111 122344556667777888888888877643211 11 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCC-C
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMRE---K-GCNP--NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----CEF-S 294 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~ 294 (491)
.+|+.+...|...|++++|+..|++..+ . +-.+ ...++..+...|.+.|++++|++.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777778888888888888877662 1 1111 11466777777777777777777777765431 110 1
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 011201 295 SVTCEILVDGLCNEGRVLKA-CELVIDF 321 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~ 321 (491)
..+|..+...|.+.|++++| ...++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34556666666677777766 5555443
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.1e-06 Score=70.40 Aligned_cols=101 Identities=14% Similarity=-0.016 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.....+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++..+.... +...|..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 5566677777777777888888888888777753 446777777777777778888888877777665432 5566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|.+.|++++|.+.|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777765
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.5e-06 Score=66.77 Aligned_cols=112 Identities=15% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 3556666677777777777777777776652 34566667777777777777777777777665432 24556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
.+.+.|++++|.+.|+++.+.... +...+..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 120 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 120 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 666777777777777666654322 33444444333
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=5.4e-05 Score=73.64 Aligned_cols=344 Identities=8% Similarity=-0.073 Sum_probs=210.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHcC-CCCCCCCCcccCCchHHHHHHHHHHHH-
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYR-FSELHSVLNFISAN-PCPCSNDGIFSCPEMERIFHFAVNAFV- 165 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~- 165 (491)
...+..+|..+... .|+...|...+....+.+. .+....+|+..+.. |. .+.+..+|...+..+.
T Consensus 30 ~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~---------d~~s~~iW~~Yi~f~~~ 97 (493)
T 2uy1_A 30 YRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN---------YWDSYGLYKEYIEEEGK 97 (493)
T ss_dssp HHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT---------CTTCHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC---------CcccHHHHHHHHHHHHh
Confidence 34577888887763 4688888888888877763 45567778776653 21 1233466766666543
Q ss_pred ---HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 166 ---KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK-------------CREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 166 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
..++++.+..+|++.... ....-...|......-.. .+.+..|..+++.+...-...+...|.
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~ 176 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 346788899999999874 111112222222221111 122334455554443210001334565
Q ss_pred HHHHHHHhcC-C------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 230 ILISGFCRNK-K------FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 230 ~li~~~~~~~-~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
..+..-...+ . .+.+..+|+++..... -+...|...+.-+.+.|+.++|.++|++.... +.+...+.
T Consensus 177 ~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~--- 250 (493)
T 2uy1_A 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL--- 250 (493)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH---
T ss_pred HHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH---
Confidence 5555432211 1 3457789999887643 36788999999999999999999999999987 22332222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---------C---CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 303 DGLCNEGRVLKACELVIDFSRRG---------V---LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTT 370 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (491)
.|....+.++. ++.+.+.- . ......|...+..+.+.++.+.|.++|+.. .. ...+...|..
T Consensus 251 -~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~ 324 (493)
T 2uy1_A 251 -YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIY 324 (493)
T ss_dssp -HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHH
T ss_pred -HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHH
Confidence 22222121221 22222110 0 011245666777777788899999999998 32 2224444543
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 371 LIEGLRR-LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 371 li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
....-.. .++.+.|.++|+...+.- .-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCC
Confidence 2222222 336999999999998862 2234556667777788999999999998873 25788888888778889
Q ss_pred CHHHHHHHHHHHHH
Q 011201 450 RRKEGENLVNEMLD 463 (491)
Q Consensus 450 ~~~~A~~~~~~m~~ 463 (491)
+.+.+.++++++..
T Consensus 399 ~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 399 SMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988874
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-06 Score=67.85 Aligned_cols=121 Identities=10% Similarity=0.120 Sum_probs=85.4
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
..+.....+..+...+.+.|++++|+..|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 87 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGY 87 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHH
Confidence 345667778888888888888888888888887652 34677788888888888888888888888776532 256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
..+...+.+.|++++|.+.|++..+.... +...+..+...+.+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 77777777788888888888777665322 344555555555443
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.8e-06 Score=70.41 Aligned_cols=129 Identities=10% Similarity=0.116 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|.+.+++..+.... +...|..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 34566777778888888888888888766532 25667777778888888888888888887776432 56677777778
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCE--ILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
+...|++++|...|++..+.... +...+. .....+...|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888887765432 333332 2333355667777777766554
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=1.2e-06 Score=67.90 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=83.1
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
+.....+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 85 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHH
Confidence 3345667777777888888888888888877653 34667777777778888888888888877766432 24566677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK 275 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 275 (491)
+...+.+.|++++|.+.|++..+.... +...+..+..++.+.|+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 777777777777777777777665332 45566666666655554
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.7e-06 Score=66.43 Aligned_cols=113 Identities=16% Similarity=0.300 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...|..+...+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|...|+++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 56677777778888888888888887766432 25666777777777788888888888777765332 56677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
+...|++++|...++++.+.... +...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 77777777777777777765422 334444444333
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=1.5e-06 Score=67.37 Aligned_cols=99 Identities=9% Similarity=0.127 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 355666777777778888888887777665322 5667777777777777777777777777765433 56677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 011201 270 FFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+...|++++|++.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777777654
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.4e-07 Score=76.39 Aligned_cols=155 Identities=12% Similarity=-0.020 Sum_probs=86.7
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcC
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD----RVK-PDVVTFNILISGFCRNK 239 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~ 239 (491)
...|++++|.+.++.+... ......+++.+...+...|++++|.+.+++.... +.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4567788888755555431 1235667777778888888888888888776551 111 12345666666777777
Q ss_pred ChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCC--hhhHHHHHHHHHhc
Q 011201 240 KFDLALGLFREMREK----GCNP--NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG---CEFS--SVTCEILVDGLCNE 308 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~ll~~~~~~ 308 (491)
++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777765543 1111 13345566666666777777777666654321 0000 12234445555555
Q ss_pred CCHHHHHHHHHHH
Q 011201 309 GRVLKACELVIDF 321 (491)
Q Consensus 309 g~~~~a~~~~~~~ 321 (491)
|++++|.+.+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 5665555555444
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=1.9e-06 Score=75.93 Aligned_cols=196 Identities=8% Similarity=-0.017 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCCh---
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL-------INGFVKCREFDKALGFYDRMVRDRVKPDV--- 225 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--- 225 (491)
.|..-+. + ..++...|.+.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+.
T Consensus 10 ~~~~~~~-~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a 83 (282)
T 4f3v_A 10 LFESAVS-M-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNA 83 (282)
T ss_dssp HHHHHHH-H-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCC
T ss_pred HHHHHhc-c-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhh
Confidence 3444443 3 6899999999999999874 4467888887 4666666666666665555433 22221
Q ss_pred -------------------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 226 -------------------VTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 226 -------------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
..+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 122335566778888888888888877654 33335556666788888888888888754
Q ss_pred HHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 287 IELGCEF--SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 287 ~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
.+.. .+ ....+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3321 11 123566677777888888888888887764433233 2244555666667777777777777777654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=6.2e-07 Score=80.65 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566677777788888888888888877753 346777777778888888888888888877665322 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+|.+.|++++|++.|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=2.1e-06 Score=66.98 Aligned_cols=119 Identities=8% Similarity=0.110 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|++.+++..+.... +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 4566777888888888888888888888776532 25667777777888888888888888887775433 567777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
.++.+.|++++|.+.|++..+.... +...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 7888888888888888877765322 3344455555544433
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=3.3e-07 Score=82.49 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566777888888888888888888887765322 6677888888888888888888888888776433 5677888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 011201 269 GFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~ 289 (491)
++...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=8.3e-07 Score=75.24 Aligned_cols=121 Identities=12% Similarity=-0.000 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCC
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERK 275 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~ 275 (491)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+. |..+ ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3457777777755444331 1224556667777777777777777777776552 1111 23455666666777777
Q ss_pred HHHHHHHHHHHHHc----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 276 FDEGVNMAYEMIEL----GCEF--SSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 276 ~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777665543 1011 12334555555666666666666665544
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=1.8e-06 Score=79.85 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-------------VSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
.....+..+...+.+.|++++|+..|++..+.....++ ..+|..+..+|.+.|++++|++.|++..+
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777777777777777765311110 35555555566666666666666665554
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011201 219 DRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 219 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 279 (491)
.... +...|..+..+|...|++++|++.|++..+.... +...+..+..++.+.|+.+++
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4221 4445555555555555565555555555554322 344555555555555555555
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=1.3e-06 Score=72.43 Aligned_cols=124 Identities=10% Similarity=0.189 Sum_probs=99.3
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCh-
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG-FCRNKKF- 241 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~- 241 (491)
+...|++++|+..+++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 346788999999999988763 457888999999999999999999999998775422 66777778888 7788998
Q ss_pred -hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 011201 242 -DLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC 291 (491)
Q Consensus 242 -~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (491)
++|.+.|++..+.... +...+..+...|...|++++|...|+++.+...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999887543 577888899999999999999999999887653
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=8.2e-07 Score=78.26 Aligned_cols=190 Identities=6% Similarity=-0.099 Sum_probs=143.0
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHhcCCCCC----
Q 011201 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFA-------VNAFVKANRMNDGLLAFEAMRKLIDGRPS---- 189 (491)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 189 (491)
..++...|.+.|.++.... |.+...|..+ ...+.+.++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-----------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l---~p~~l~a 83 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-----------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI---SMSTLNA 83 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC---CGGGGCC
T ss_pred cCCCHHHHHHHHHHHHHhC-----------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC---Chhhhhh
Confidence 5799999999999998754 6667888877 57777777777777666655442 121
Q ss_pred ------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 190 ------------------VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 190 ------------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 2334456778889999999999999987654 44335666667899999999999999865
Q ss_pred HHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 252 REKGCNPN--VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 252 ~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
.... .|. ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++......
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5431 111 34678888999999999999999999985443243 335566777888999999999999999987544
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=1.8e-06 Score=69.30 Aligned_cols=125 Identities=11% Similarity=-0.008 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+...+.+.+...+.+++++++ .+.+...+..+...+.+.|++++|.+.|++....... +...|..+..+
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l---------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 79 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI---------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555544444221 1234567778888888889999999999888776433 67788888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+..
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88889999999999888876544 57788888888888899999988888888764
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=0.00012 Score=66.34 Aligned_cols=140 Identities=12% Similarity=-0.000 Sum_probs=95.7
Q ss_pred HHHcCChh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 164 FVKANRMN-DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE----------FDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 164 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
..+.|.+. +|+..++.+.... +-+..+||.--..+...+. +++++.+++.+.....+ +..+|+.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556654 7889999888763 3456667766555544443 57788888888775433 666777666
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 233 SGFCRNK--KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK-FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 233 ~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
..+.+.+ ++++++++++++.+.... |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 6666666 478888888888887655 77788777777777777 57888888888877644 666666655554443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2.9e-06 Score=65.78 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+...|++++|.+.|++...... .+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 455666777777777888888888777765432 25566777777777777777777777777765332 4666777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
.+...|++++|...+++..+.... +...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 777777777777777777665432 44555555555555554
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=9e-07 Score=73.35 Aligned_cols=120 Identities=9% Similarity=-0.003 Sum_probs=73.8
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED-LCDVGRT--VD 418 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~--~~ 418 (491)
..|++++|.+.+++..+.... +...|..+...|...|++++|...|++..+... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666677676666655432 556666677777777777777777777666421 245555556655 5566776 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 419 ADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 419 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766653 234566666677777777777777777777654
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.2e-06 Score=64.77 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 4566777788888888888888888887763 446778888888888888888888888887765422 5667777788
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~ 254 (491)
++...|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=1.3e-06 Score=69.93 Aligned_cols=101 Identities=10% Similarity=-0.065 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.....+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|.+.|++....... +...|..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~ 94 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 4444555666666666677777777766666542 345666666666666666666666666666554322 4455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|...|++++|.+.|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665543
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=4.8e-07 Score=76.65 Aligned_cols=151 Identities=13% Similarity=-0.015 Sum_probs=79.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------h
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD--------------V 225 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~--------------~ 225 (491)
+......|+++++.+.++.-.... ......+..+...+.+.|++++|.+.|++..+.... ++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344445566666655554332210 123455667777777888888888888877664221 10 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
..|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|++.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 45555666666666666666666666655322 4556666666666666666666666666654322 344455555555
Q ss_pred HhcCCHHHHH
Q 011201 306 CNEGRVLKAC 315 (491)
Q Consensus 306 ~~~g~~~~a~ 315 (491)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=0.00033 Score=63.53 Aligned_cols=174 Identities=6% Similarity=-0.011 Sum_probs=126.4
Q ss_pred HHHhcCChh-HHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCC
Q 011201 118 SLASSYRFS-ELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR----------MNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 118 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~ 186 (491)
...+.|.++ +|+.+...++..+ |....+|+.--..+...++ +++++.+++.+....
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-----------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-- 104 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-----------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-- 104 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-----------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-----------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--
Confidence 334556665 7899999988765 4445666655444444333 688999999998863
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHH
Q 011201 187 RPSVSIYNVLINGFVKCR--EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK-FDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+.+..+|+.-..++.+.+ .+++++++++.+.+.... |-..|+.-...+...|. ++++++.++++.+..+. |..+|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 568889998888888888 489999999999987644 77888887777788888 59999999999998766 88888
Q ss_pred HHHHHHHHcC--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 264 NTLIRGFFGE--------------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 264 ~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
+.....+.+. +.++++++.+.+.....+. |...|+-+-..+.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 8776665544 3467777777777766533 56666544444433
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=3.6e-06 Score=77.77 Aligned_cols=151 Identities=13% Similarity=0.039 Sum_probs=103.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------hhhHHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD--------------VVTFNILI 232 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li 232 (491)
.+++++|+..|+...... +.+...|..+...|.+.|++++|.+.|++..+...... ...|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 344556665555444321 12567788899999999999999999999877542211 36777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888877776433 5677777777777788888888887777766432 4566666777777777777
Q ss_pred HH-HHHHHHH
Q 011201 313 KA-CELVIDF 321 (491)
Q Consensus 313 ~a-~~~~~~~ 321 (491)
++ ...+..|
T Consensus 282 ~a~~~~~~~~ 291 (336)
T 1p5q_A 282 AREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 66 3344444
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=9.6e-07 Score=70.80 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+.+.|++++|...|+........ +...|..+..+|.+.|++++|++.|++....... +...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 4555666677777777777777777776654322 5666667777777777777777777777665433 5566667777
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 011201 269 GFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=1.8e-05 Score=59.84 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.+++..+.... +...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 456666777777888888888888777653 346677777777777778888888877777665322 45666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 011201 235 FCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g 255 (491)
+.+.|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777776653
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=6.5e-06 Score=65.33 Aligned_cols=101 Identities=13% Similarity=-0.048 Sum_probs=68.6
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.....+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|++....... +...|..
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 91 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHH
Confidence 4445566666777777777777777777777653 346666777777777777777777777776665322 4556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|...|++++|.+.|++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777777777777766554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.2e-05 Score=62.05 Aligned_cols=98 Identities=10% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...|..+...+.+.|++++|.+.|++..+.... +...|..+..++.+.|++++|++.|++..+.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345666777777778888888888777665322 5667777777777778888888877777766433 56677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHc
Q 011201 270 FFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~ 289 (491)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777654
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.2e-05 Score=74.12 Aligned_cols=209 Identities=9% Similarity=-0.033 Sum_probs=145.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccC------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSC------PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
-.+.+.+.|++++|.+.+..+............... .....++..++..|.+.|++++|.+.+..+.+..+..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356778899999999999998875443221111100 12235678889999999999999999998876533222
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-
Q 011201 189 SV----SIYNVLINGFVKCREFDKALGFYDRMVR----DRVKPD-VVTFNILISGFCRNKKFDLALGLFREMREK--GC- 256 (491)
Q Consensus 189 ~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~- 256 (491)
+. .+.+.+-..+...|+.++|.++++.... .+..+. ..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 2234444455566899999999887654 222222 456778899999999999999999987653 11
Q ss_pred -CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 257 -NP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFS----SVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 257 -~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
.+ ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888899999999999999999887643 11111 24556666777888999999888877653
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=2.1e-05 Score=59.42 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|.+.|++...... .+...+..+...+.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 44566666667777777777777777665432 24556666666677777777777777776665332 45566666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 011201 270 FFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 667777777777776666543
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.3e-05 Score=73.16 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPN----------------VVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566777777777777666532211 0124445555555566665555555544
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.1e-05 Score=62.46 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----hhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PD----VVT 227 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~----~~~ 227 (491)
..++..+...+.+.|++++|+..|++..+.. +.+..+|+.+..+|.+.|++++|++.|++..+.... .+ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4567778888888999999999998888763 456778888888888888888888888887653211 11 124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
|..+..++...|++++|++.|++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555666666777777777777766553
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1.9e-05 Score=64.31 Aligned_cols=101 Identities=8% Similarity=-0.047 Sum_probs=78.7
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
+.....+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +...|..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4456677788888888888888888888888763 346778888888888888888888888887775422 5667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|.+.|++++|.+.|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888887765
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=1e-05 Score=68.31 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--------------VSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
...+..+...+.+.|++++|+..|++..+.....++ ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356777888899999999999999999886422221 278889999999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHc
Q 011201 220 RVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGV-NMAYEMIEL 289 (491)
Q Consensus 220 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 289 (491)
.. .+...+..+..+|...|++++|++.|++..+.... +...+..+..++...++.+++. ..+..|...
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 36778889999999999999999999999887433 6677888877777777766665 445555443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=7.2e-06 Score=63.47 Aligned_cols=109 Identities=7% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----hhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRV--KPD----VVT 227 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~ 227 (491)
...+..+...+...|++++|+..|++..+.. +.+...+..+...|...|++++|...+++...... .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4566777788888888888888888887753 34677788888888888888888888887765421 112 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
|..+...+.+.|++++|.+.|++..+.. |+...+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 6666777777777777777777776653 344444433
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=2e-05 Score=61.76 Aligned_cols=98 Identities=11% Similarity=-0.117 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
+...|..+...+...|++++|+..|++.++.. .-+...+..+..++...|++++|...++...+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44555555666666666666666666655542 1235555566666666666666666666665543 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011201 444 GYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (491)
+|...|++++|.+.|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666553
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=1.1e-05 Score=64.07 Aligned_cols=100 Identities=12% Similarity=-0.042 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+.+.|++++|.+.|+........ +...|..+..++.+.|++++|+..|++....... +...|..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 4555667777888888888888888888775432 6677788888888888888888888888876543 5677778888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcC
Q 011201 269 GFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+|...|++++|.+.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.8e-05 Score=64.45 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.+...|..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 35667888888899999999999999988776432 6778888888999999999999999998887543 678888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.+|...|++++|++.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999888764
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=9.7e-06 Score=60.74 Aligned_cols=98 Identities=8% Similarity=-0.021 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PDVVTFNILIS 233 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~ 233 (491)
..+..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|.+.|++..+.... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445566677777777777777777777653 345666777777777777777777777777665211 13556666677
Q ss_pred HHHhc-CChhHHHHHHHHHHHc
Q 011201 234 GFCRN-KKFDLALGLFREMREK 254 (491)
Q Consensus 234 ~~~~~-~~~~~A~~~~~~m~~~ 254 (491)
.+.+. |++++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776655
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.9e-05 Score=61.62 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=73.4
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVV 226 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 226 (491)
+.....+..+...+...|++++|+..|++..+. .|+ ...|..+...|...|++++|.+.+++..+.... +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHH
Confidence 445667777788888888888888888888765 244 566777777788888888888888777664322 456
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
.|..+..++...|++++|.+.|++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6677777777778888888877777765
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=2.1e-05 Score=61.59 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.... +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 4556666666666666666666666666542 334556666666666666666666666665554322 4455555566
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~ 253 (491)
++...|++++|.+.|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665544
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5.3e-05 Score=60.03 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD----VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|++.+++..+.... +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 46777888888888889999999999888765 344 567777788888888888888888887776332 56777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 778888888888888888888877654
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.3e-05 Score=60.72 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL--DPD----GMTYH 439 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~p~----~~~~~ 439 (491)
..+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++...+... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555666666666667776666666642 11355666666666677777777666666554310 111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 440 ILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSY 476 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 476 (491)
.+..++...|++++|++.|++.++. .||..+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 6667777778888888888777643 4565554443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=1.4e-05 Score=61.72 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL--DPD----GMTYH 439 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~p~----~~~~~ 439 (491)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...++.+.+... .++ ...|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344555555566666666666666655542 22445555556666666666666666665554321 111 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 440 ILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
.+..+|.+.|++++|.+.|+++.+. .|+...+..+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 6666677777777777777776653 345555554444443
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=2.9e-05 Score=58.05 Aligned_cols=60 Identities=3% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
+..+...+...|++++|...|++..+... .+...|..+...+.+.|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444444444333221 1233333344444444444444444444433
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.8e-05 Score=63.75 Aligned_cols=134 Identities=14% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD---- 224 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~---- 224 (491)
..++..+...+...|++++|+..+++..+......+ ..++..+...+...|++++|.+.+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456777788888889999998888887664211112 246777777788888888888887776542100 01
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 234555556666666666666666655432 1000 12234444444555555555555555443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=2.1e-05 Score=60.38 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3455667778888888888888888763 446778888888888888888888888887775432 5667777888888
Q ss_pred hcCChhHHHHHHHHHHHc
Q 011201 237 RNKKFDLALGLFREMREK 254 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~ 254 (491)
+.|++++|++.|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887754
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.5e-05 Score=62.85 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 011201 369 TTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 369 ~~li~~~~~~g~~~~a~~~~~~m 391 (491)
..+...+...|++++|.+.+++.
T Consensus 133 ~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 133 WSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 33344444444444444444443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=3.5e-05 Score=59.06 Aligned_cols=88 Identities=11% Similarity=-0.051 Sum_probs=37.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
..+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.... +...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444443221 3344444444444444444444444444443321 2333444444444444444
Q ss_pred HHHHHHHHHH
Q 011201 313 KACELVIDFS 322 (491)
Q Consensus 313 ~a~~~~~~~~ 322 (491)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=4.2e-05 Score=73.81 Aligned_cols=138 Identities=6% Similarity=0.012 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+......+.+.|++++|+..|++..+.....++. .-+...+ ...+ ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~-~~~~-------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--------------SEKESKA-SESF-------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHHHHH-HHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--------------ChHHHHH-HHHH-------HHHHHHHHHH
Confidence 4556666777777777777777777766653211110 0000000 0000 1234455555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544322 4455555555555555555555555555544321 33445555555555555554
Q ss_pred HH
Q 011201 314 AC 315 (491)
Q Consensus 314 a~ 315 (491)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=0.00011 Score=56.75 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHH
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV---SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD---VVTFNIL 231 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l 231 (491)
..+...+.+.|++++|+..|+++.+... .+. .++..+..++.+.|++++|...|++..+.... + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 3456667778888888888888777531 222 46667777778888888888888877665322 2 4456667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 011201 232 ISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
..++.+.|++++|.+.|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=4.4e-05 Score=74.09 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
..+...+.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|.+.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 33445566777888888888877665322 4667777777788888888888888877776433 566777777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDG--LCNEGRVLKACELVI 319 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 319 (491)
|++++|++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888777765432 33344444444 666677777777766
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1.6e-05 Score=77.25 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3445678999999999999998873 456899999999999999999999999999887433 6788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRG--FFGERKFDEGVNMAY 284 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 284 (491)
++++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999886433 34455555555 888899999999988
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.01 E-value=0.00027 Score=54.43 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNILISGFCRNKKFDLALGLFREMREKGCNPN---VVSFNTLI 267 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~li 267 (491)
..+...+.+.|++++|.+.|+...+.... +. ..+..+..++.+.|++++|...|++..+.... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34556666777777777777777664321 22 35666667777777777777777777765332 2 45566677
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.++.+.|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777777776653
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00037 Score=68.94 Aligned_cols=176 Identities=14% Similarity=-0.005 Sum_probs=135.0
Q ss_pred HcCC-hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 166 KANR-MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE----------FDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 166 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
+.|. -++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-...
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444 567899999999874 4567778888777777777 89999999999887544 67788887778
Q ss_pred HHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---
Q 011201 235 FCRNK--KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE--- 308 (491)
Q Consensus 235 ~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 308 (491)
+.+.+ +++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 88888 779999999999998666 8889988888888888 899999999999887654 777787776666553
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 309 -----------GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 309 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
+.++++.+.++........ +...|..+-..+.+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4567888888877776544 5566666666666666533
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=8.8e-05 Score=69.29 Aligned_cols=138 Identities=10% Similarity=0.023 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+.+.|++++|+..|++..+.. ++.. .....+++.+ .. .-+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 346667777888888888888888776521 0000 0000000000 00 0123445555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
|.+.|++++|++.+++..+.... +...|..+..+|...|++++|++.|++..+.... +...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544222 3445555555555555555555555555544322 344444444555555554444
Q ss_pred H
Q 011201 315 C 315 (491)
Q Consensus 315 ~ 315 (491)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=9.6e-05 Score=71.31 Aligned_cols=166 Identities=8% Similarity=-0.028 Sum_probs=112.2
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 247 (491)
+++++|+..|+...... ......|..+...|.+.|++++|...|++..+.. |+...+ .-+..
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~--- 309 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKES--- 309 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHH---
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHH---
Confidence 34445554444333221 1235567777788888888888888888776531 111100 00111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
.++... ....|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+..++....
T Consensus 310 -~~~~~~----~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 310 -KASESF----LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred -HHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 111111 3567889999999999999999999999987643 6788999999999999999999999999887543
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHH-HHHHHHH
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALE-VVDELWK 358 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 358 (491)
+...+..+..++.+.++.+++.+ ++..|..
T Consensus 384 -~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 -NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678888888999998887764 5555544
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=0.0001 Score=68.89 Aligned_cols=92 Identities=7% Similarity=-0.121 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
+...|..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|++++|.+.|+...+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 5678899999999999999999999999986533 6788889999999999999999999999887543 5667777888
Q ss_pred HHHcCCCHhHHHHH
Q 011201 339 KLCGEGNAGIALEV 352 (491)
Q Consensus 339 ~~~~~g~~~~a~~~ 352 (491)
.+...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777653
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.0002 Score=58.01 Aligned_cols=100 Identities=9% Similarity=0.101 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLID----------------GRPSVSIYNVLINGFVKCREFDKALGFYDRMV 217 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 217 (491)
...+......+.+.|++++|+..|.+...... .+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45677788899999999999999998876510 01123455555666666666666666666655
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 218 RDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 218 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+.... +...|..+..+|...|++++|.+.|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54311 4455555555666666666666666655554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00065 Score=67.16 Aligned_cols=174 Identities=6% Similarity=-0.036 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCCCHHH
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR----------MNDGLLAFEAMRKLIDGRPSVSI 192 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~ 192 (491)
..-++|...++.+.... |....+|+.--.++.+.|+ ++++++.++.+.+.. +.+..+
T Consensus 43 ~~~eeal~~~~~~l~~n-----------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~a 109 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-----------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGT 109 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred CCCHHHHHHHHHHHHHC-----------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHH
Confidence 34467789999887754 5556788877777777777 999999999999864 568889
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 193 YNVLINGFVKCR--EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK-KFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 193 ~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
|+.-..++.+.+ +++++++.++++.+.... |...|+.-...+.+.| .++++++.++++.+..+. |..+|+.....
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 999999999999 779999999999987654 7888988888888888 899999999999988666 88889887777
Q ss_pred HHcC--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 270 FFGE--------------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 270 ~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
+.+. +.++++++.+++....... |...|..+-..+.+.++.+
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 6653 5578999999999887644 7778887777777766643
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.92 E-value=5.9e-05 Score=57.30 Aligned_cols=88 Identities=3% Similarity=-0.039 Sum_probs=59.9
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 201 (491)
.|++++|...+++.+..+. ..|....++..+..+|.+.|++++|+..|++..+.. +.+..++..+..++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 4677777777777776431 125556677777778888888888888888777753 345677777777777
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 011201 202 KCREFDKALGFYDRMVRD 219 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~ 219 (491)
+.|++++|.+.|++....
T Consensus 73 ~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888877776654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=3.6e-05 Score=71.04 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|++..+.. |+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 4556677788888899999999999887752 43321 122233333332221 136677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG-LCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~ 312 (491)
+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776432 6677888888888888888888888887654322 33444444443 23345667
Q ss_pred HHHHHHHHHHhCC
Q 011201 313 KACELVIDFSRRG 325 (491)
Q Consensus 313 ~a~~~~~~~~~~~ 325 (491)
++..+|..+....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7777777776543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.87 E-value=0.00011 Score=59.58 Aligned_cols=62 Identities=8% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|.+.|++.++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555556666666666666666665542 23455566666666666666666666666654
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.84 E-value=0.00028 Score=56.04 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-----SV-----SIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
..+......+.+.|++++|+..|++..+.....| +. ..|+.+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455667777888888888888888877642211 11 1455555555555555555555554443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=3.4e-05 Score=58.66 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
.+..+..++...|++++|+..+++.
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444444444444333
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.83 E-value=0.00013 Score=70.54 Aligned_cols=133 Identities=9% Similarity=-0.056 Sum_probs=91.2
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCCC-HH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-----IDGRPS-VS 191 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~ 191 (491)
.+...|++++|..++++.+......-. -..|....+++.+...|...|++++|+.++++.... +...|+ ..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg---~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFA---DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBC---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 455779999999999888654221100 123567788999999999999999999998886543 222343 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCC-CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVR-----DRVK-PD-VVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~-p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
+++.|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++.+.+.+++|+.+|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999988887654 1221 11 22344555566666667777777766654
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00064 Score=53.28 Aligned_cols=13 Identities=0% Similarity=0.123 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHH
Q 011201 170 MNDGLLAFEAMRK 182 (491)
Q Consensus 170 ~~~a~~~~~~~~~ 182 (491)
+++|++.|++..+
T Consensus 11 ~~~A~~~~~~aa~ 23 (138)
T 1klx_A 11 LKKAIQYYVKACE 23 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3344444444333
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00067 Score=53.15 Aligned_cols=110 Identities=11% Similarity=-0.058 Sum_probs=57.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDAD 420 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 420 (491)
+.++|.+.|++..+.|.. +. . +...|...+..++|+++|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344555555555554411 11 1 3333444444555555555555543 44445555555554 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011201 421 RLRLLASTKGLDPDGMTYHILVSGYTR----ENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 421 ~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 465 (491)
+++++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665553 44555555555555 566666666666666554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00025 Score=52.81 Aligned_cols=87 Identities=7% Similarity=-0.125 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-------LATY 473 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~ 473 (491)
..+..+...+...|++++|...++...+.. +.+...|..+..+|.+.|++++|++.+++.++. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 344445555555566666666655555542 224555555666666666666666666666532 333 3445
Q ss_pred HHHHHHHHhcCCccccc
Q 011201 474 NSYMDGLSNARKSVRQT 490 (491)
Q Consensus 474 ~~ll~~~~~~g~~~~A~ 490 (491)
..+..++...|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHhHhhhH
Confidence 55555555555555543
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00039 Score=55.22 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-----Ch-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVK-P-----DV-----VTFNILISGFCRNKKFDLALGLFREMREK----- 254 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p-----~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 254 (491)
..+......+.+.|++++|++.|++..+.... | +. ..|+.+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777888888888888887764222 1 11 15566666666666666666666665553
Q ss_pred CCCC-CHHHH----HHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 255 GCNP-NVVSF----NTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 255 g~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0122 23445 5555555555666666655555543
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=9e-05 Score=68.35 Aligned_cols=150 Identities=9% Similarity=-0.036 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445677778888889999999999887654 233221 223334444433221 2378889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcCCCHhH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEK-LCGEGNAGI 348 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 348 (491)
|.+.|++++|+..+++..+... -+...+..+..+|...|++++|...|+...+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 36788999999999999999999999998766433 33445555444 334567788
Q ss_pred HHHHHHHHHHcC
Q 011201 349 ALEVVDELWKKG 360 (491)
Q Consensus 349 a~~~~~~m~~~~ 360 (491)
+.+.|..|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 889999887654
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.0002 Score=69.07 Aligned_cols=126 Identities=6% Similarity=-0.041 Sum_probs=74.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhC---CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCC-HHHHH
Q 011201 199 GFVKCREFDKALGFYDRMVRD---RVKP----DVVTFNILISGFCRNKKFDLALGLFREMREK-----GC-NPN-VVSFN 264 (491)
Q Consensus 199 ~~~~~~~~~~A~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~-~~~~~ 264 (491)
.+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344567777777766665431 1111 1345666777777777777777777665432 22 122 34567
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIEL-----GCE-F-SSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
.|...|...|++++|+.++++..+. |.. | ...+.+.+-.++...+.+++|+.++..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777765432 322 1 1234455556666777777777777777653
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.57 E-value=0.0012 Score=46.92 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
....+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|.+.|++..+.... +...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 34566667777777788888888777777653 345666777777777777777777777776654321 344454444
Q ss_pred HHHH
Q 011201 233 SGFC 236 (491)
Q Consensus 233 ~~~~ 236 (491)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00012 Score=54.75 Aligned_cols=92 Identities=9% Similarity=0.006 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------hh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-------VV 226 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-------~~ 226 (491)
...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++..+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3567777888888888999988888888763 4467788888888888888888888888887653 33 33
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
.+..+..++...|+.+.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44445555555555555544443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00086 Score=50.42 Aligned_cols=79 Identities=14% Similarity=-0.015 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
+|+..|++..+.. +.+...+..+...|...|++++|.+.|++..+.... +...|..+..+|.+.|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555432 334556666666666666666666666665554321 3445555556666666666666666655
Q ss_pred HH
Q 011201 252 RE 253 (491)
Q Consensus 252 ~~ 253 (491)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.0014 Score=46.51 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|.+.|++..+... .+...+..+...+.+.|++++|.+.|++..+.... +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34555566666666666666666666554321 14445555556666666666666666665554222 33444444433
Q ss_pred H
Q 011201 270 F 270 (491)
Q Consensus 270 ~ 270 (491)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.43 E-value=0.0014 Score=49.21 Aligned_cols=80 Identities=8% Similarity=0.004 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 011201 127 ELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREF 206 (491)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 206 (491)
.+...++...... |.....+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++
T Consensus 3 ~a~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQG-----------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHTTT-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCH
Confidence 4667777776643 4456788999999999999999999999999874 45688899999999999999
Q ss_pred HHHHHHHHHHhhC
Q 011201 207 DKALGFYDRMVRD 219 (491)
Q Consensus 207 ~~A~~~~~~m~~~ 219 (491)
++|...|++..+.
T Consensus 70 ~~A~~~~~~al~~ 82 (115)
T 2kat_A 70 AGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.32 E-value=0.0014 Score=47.95 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
|....++..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445667777777777888888888887777753 33556777777777777888777777776654
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00061 Score=54.01 Aligned_cols=69 Identities=16% Similarity=-0.009 Sum_probs=35.4
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGV----------EASGLMEKMLKEGILP-DSVTFNCLLEDL 410 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 410 (491)
+.+.+++|.+.++...+.... +...|+.+..++...++++ +|+..|++.++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 334556666666666655433 5555655555555555432 555555555542 22 234444455554
Q ss_pred Hhc
Q 011201 411 CDV 413 (491)
Q Consensus 411 ~~~ 413 (491)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.00093 Score=52.96 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=66.1
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREF----------DKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..+.+.+++|++.++...+.. +.+...|+.+..++...+++ ++|+..|++.++.... +...|..+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 345667889999999988864 45788888888888887765 4777777776665332 4556777777
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 234 GFCRNK-----------KFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 234 ~~~~~~-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
+|...| ++++|++.|++..+. .|+...|...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 776653 566666666666654 3444444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0012 Score=48.33 Aligned_cols=82 Identities=9% Similarity=0.067 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+..+...+...|++++|...|++..+.. |....++..+..+|.+.|++++|++.|++..+.....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-----------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 56678889999999999999999999998754 3445789999999999999999999999987653222
Q ss_pred CCHHHHHHHHHHH
Q 011201 188 PSVSIYNVLINGF 200 (491)
Q Consensus 188 ~~~~~~~~li~~~ 200 (491)
++......+...+
T Consensus 75 ~~~~~~~~l~~~l 87 (100)
T 3ma5_A 75 GTQKDLSELQDAK 87 (100)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH
Confidence 3444444333333
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.12 E-value=0.044 Score=41.31 Aligned_cols=138 Identities=15% Similarity=0.038 Sum_probs=71.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALE 351 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 351 (491)
-.|..++..++..+..... +..-||.+|.-....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3456666666666655442 3444555554444444444444444444322 111 12334433333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 352 VVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 352 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
.+-.+-. +....+..+..+...|+-++..+++..+.. +.+|+......+..+|.+.|+..+|.+++.++-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332211 334455555666666666666666666433 2455666666666666666666666666666666664
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.00 E-value=0.021 Score=59.26 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
..++..+.+.|..++|+++.+.-. .-.......|++++|+++.+.+ .+...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 566777778888888876543211 1133456678888888886544 267788888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
.++++.|.+.|.++.+ |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|+++
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887654 34455555556666665555544444331 23334445555666666555
Q ss_pred HH
Q 011201 318 VI 319 (491)
Q Consensus 318 ~~ 319 (491)
+.
T Consensus 759 ~~ 760 (814)
T 3mkq_A 759 LI 760 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.012 Score=55.73 Aligned_cols=102 Identities=8% Similarity=0.003 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCC
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-----IDGRP 188 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 188 (491)
..+..+.+.|++++|..++++........-. -..|....+++.+...|...|++++|+.++++.... +...|
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg---~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLP---DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC---TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCC---ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3456677789999999999998865322111 123567788999999999999999999999987643 22234
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 189 S-VSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 189 ~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
+ ..+++.|...|...|++++|..++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 45688999999999999999999887654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.85 E-value=0.0045 Score=58.69 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=67.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCCC-HHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-----IDGRPS-VSIYNV 195 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~ 195 (491)
.|++++|..++++.+......-. -..|....+++.+..+|...|++++|+.++++.... +...|+ ..+++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg---~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFE---DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBC---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccC---hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 46789999999887653211000 123566788889999999999999999888887543 222344 355888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 011201 196 LINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
|...|...|++++|..+|++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 88889999999998888887654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.04 Score=57.16 Aligned_cols=154 Identities=9% Similarity=0.018 Sum_probs=96.3
Q ss_pred HHHHHHcCChhHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 161 VNAFVKANRMNDGLL-AFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
.......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcC
Confidence 344456788888866 44222 212233677788888899998887663211 1133456788
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
++++|+++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++.+
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 999998886543 2678899999999999999999999888642 3445555556777666555554
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
.....|. ++.-..+|.+.|++++|.+++.
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4444331 2333344445555555555543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.80 E-value=0.018 Score=52.53 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH
Q 011201 107 HDHTTFLFIVRSLASS-----YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV 165 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (491)
.+..+|...+++.... ..+.+|..+|++.++.. |....++..+.-+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-----------P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-----------PEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHH
Confidence 3455666666554432 23578999999988754 554566665555554
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.80 E-value=0.031 Score=50.97 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYN 474 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 474 (491)
..+..+|..+...+...|++++|...++++.... |+...|..+...+.-.|++++|.+.|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3456666666665566677777777777777764 6666666667777777777777777777764 356666654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.63 E-value=0.0066 Score=43.85 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=44.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS-IYNVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
....+.+.|++++|+..|++..+.. +.+.. .|..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3556777888888888888887753 34566 77788888888888888888888877653
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.58 E-value=0.012 Score=55.78 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=63.7
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKE---GILPD----SVTFNCLLEDLCDVGRTVDADRLRLLAST-----KGL-DPD-GMTYHILV 442 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~-~p~-~~~~~~li 442 (491)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|..++++..+ .|- .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876653 12232 45788888888889999999888877653 221 222 45688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011201 443 SGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.023 Score=53.87 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=70.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKE---GILPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTK-----G-LDPD-GMT 437 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g-~~p~-~~~ 437 (491)
+..+.+.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|..+++++.+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999988764 12233 457888888999999999999988876532 2 1222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.47 E-value=0.17 Score=38.25 Aligned_cols=139 Identities=10% Similarity=0.077 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
-.|.+++..+++.+..... +..-||.+|--....-+-+...++++.+-+. .|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 4577888888887776653 4444666665555555555555555554332 122 12334443333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
-+-.+ .-+...+...+..+...|+.|+-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33222 225556677788889999999999999886553 467889999999999999999999999999999997
Q ss_pred C
Q 011201 467 I 467 (491)
Q Consensus 467 ~ 467 (491)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.34 E-value=0.011 Score=42.54 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVV-SFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+.+.|++++|++.|++..+.... +.. .|..+..+|...|++++|++.|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444444443211 233 4444444444444444444444444443
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.3 Score=39.18 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDR 215 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~ 215 (491)
...|..|.+.....|+++-|.+.|..
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.26 Score=39.52 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=22.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
.+.|+++.|.++.+++. +...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555544431 4445555555555555555555555443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.26 E-value=0.086 Score=37.55 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 151 PEMERIFHFAVNAFVKANR---MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
|.+...+..+..++...++ .++|..+|++..+.. +.++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456677777777765444 688999999988863 4577888888888999999999999999988764
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.81 E-value=0.091 Score=41.07 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG---NAGIALEVVDELWKKGNLP--SVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
..+.+-|.+..+.+. ++..+...+..++++++ ++++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 444555555555444 45566666666677766 5557777777776654 12 23444455556677777777777
Q ss_pred HHHHHHHCCCCCC
Q 011201 387 LMEKMLKEGILPD 399 (491)
Q Consensus 387 ~~~~m~~~~~~p~ 399 (491)
+++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777777 3554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.69 E-value=0.17 Score=36.03 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 107 HDHTTFLFIVRSLASSYR---FSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
.+...+..+..++...++ .++|..++++.+... |....+...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455667777777765544 799999999998754 566788999999999999999999999999986
Q ss_pred c
Q 011201 184 I 184 (491)
Q Consensus 184 ~ 184 (491)
.
T Consensus 73 ~ 73 (93)
T 3bee_A 73 N 73 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.61 E-value=0.08 Score=41.39 Aligned_cols=64 Identities=16% Similarity=-0.045 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 398 PDSVTFNCLLEDLCDVG---RTVDADRLRLLASTKGLDP--DGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
++..+...+..++++.+ +++++..+++...+.. .| +...+-.|.-+|.+.|++++|.+.++.++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444445555544 3445555555554432 12 12233334444555555555555555555
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.38 E-value=3 Score=43.09 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=90.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHcCCC
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL--CNEGRVLKACELVIDFSRRGVLPKDF--DYFGLVEKLCGEGN 345 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 345 (491)
++..|+-+....++..+.+.. +..+...+.-++ ...|+.+.+..+++.+.... .|... ...++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344555555555555554421 223333333333 34566666666666555431 11111 11233445566666
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT-VDADRLRL 424 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~ 424 (491)
.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666666665532 1123322223333444555555555555444432 23333222333333333332 45555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh--cC-------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 011201 425 LASTKGLDPDGMTYHILVSGYTR--EN-------RRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 425 ~~~~~g~~p~~~~~~~li~~~~~--~g-------~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~ 485 (491)
.+... +|..+-..-+.++.. .| ++...++.+...... .-.++...-..+..+....|+
T Consensus 654 ~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 654 PLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 55532 333333222223322 22 333444433333332 223344555556666666664
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.32 E-value=0.18 Score=36.64 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDR------VKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
..+..|...+.+.|+++.|..+|+...+.- -......+..|..++.+.|+++.|+..+++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444445555555555544433310 011233344444444444444444444444443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.23 E-value=0.17 Score=36.77 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEG------ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
+...+..|...+.+.|+++.|..+|++..+.- -......+..+..++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444555566666666666666666554420 0123344555555555555555555555555543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.11 E-value=0.2 Score=43.82 Aligned_cols=83 Identities=11% Similarity=-0.036 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-CCh
Q 011201 346 AGIALEVVDELWKKGNL-PSVIACTTLIEGLRRL-----RKGVEASGLMEKMLKEGILP--DSVTFNCLLEDLCDV-GRT 416 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~-g~~ 416 (491)
...|...+++..+.... .+-..|..+...|.+. |+.++|.+.|++.++. .| +..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 44555555555554322 1234555566556553 6666666666666663 33 244555555555553 666
Q ss_pred HHHHHHHHHHHHCC
Q 011201 417 VDADRLRLLASTKG 430 (491)
Q Consensus 417 ~~a~~~~~~~~~~g 430 (491)
+++.+.+++.....
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 66666666666543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.04 E-value=0.16 Score=44.46 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CC
Q 011201 170 MNDGLLAFEAMRKLIDGRPS---VSIYNVLINGFVK-----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN-KK 240 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~ 240 (491)
..+|...+++..+.. |+ -..|..|...|.+ .|+.++|.+.|++..+.+..-+..++......+++. |+
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 466777788877763 55 5678899999988 489999999999988764332477777788888884 88
Q ss_pred hhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011201 241 FDLALGLFREMREKGCN--PNVVSFNTL 266 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~--p~~~~~~~l 266 (491)
.+++.+.+++....... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999998887665 665555544
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.72 E-value=2.3 Score=43.90 Aligned_cols=239 Identities=10% Similarity=-0.001 Sum_probs=116.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCCh--hhHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGC-------NPNVVSFNTLIRGFFGERK-FDEGVNMAYEMIELGCEFSS--VTCEI 300 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~--~~~~~ 300 (491)
+.-+....|..+++..++.......- .+....-.++.-+++-.|. -+++.+.+..+....-. .. ..--.
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalA 495 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALG 495 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Confidence 33445555655566666665544311 0111112223333333332 23455555555543210 00 11112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH--HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH---HHHHHH
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLV--EKLCGEGNAGIALEVVDELWKKGNLPSVIACT---TLIEGL 375 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~ 375 (491)
+...++-.|+.+....++..+.+.. +..+...+. -++...|+.+.+..+++.+.... . ...-|. ++..+|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-d-p~vRygaa~alglAy 570 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-E-SLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-C-HHHHHHHHHHHHHHT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHh
Confidence 2233445567676677776665432 222233333 33446778888887777776532 1 223333 233456
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 011201 376 RRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRR-KEG 454 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~-~~A 454 (491)
+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 67777766666887777642 2222222223334445666666667766555543 44444444444455545443 577
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 455 ENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 455 ~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
..++..+.. .+|..+-..-+.++
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHH
Confidence 778887763 23444443333333
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.38 E-value=1.8 Score=41.02 Aligned_cols=256 Identities=12% Similarity=0.028 Sum_probs=144.6
Q ss_pred CChhHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhH--HHHHHHHHhcCC
Q 011201 168 NRMNDGLLAFEAMRKL----IDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKPDVVTF--NILISGFCRNKK 240 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~--~~li~~~~~~~~ 240 (491)
|++++|++.+-.+.+. .+..-.......++..|.+.|+++...+.+..+... |......+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888777666653 222345677888999999999999998888776543 433222221 222232323333
Q ss_pred hhHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHh
Q 011201 241 FDLA--LGLFREMRE--KG-CNP---NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-S----SVTCEILVDGLCN 307 (491)
Q Consensus 241 ~~~A--~~~~~~m~~--~g-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~ 307 (491)
.+.. ..+.+.... .| +-. .......|...|...|++.+|.+++..+...-... + ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3221 112211110 01 111 12234567888999999999999999986432111 1 2456667788999
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHH
Q 011201 308 EGRVLKACELVIDFSR----RGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKK-GNLPSVIACTT----LIEGLR 376 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~----li~~~~ 376 (491)
.+++.+|..++..+.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ...-+...+.. ++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999888643 222222 234566777788889999988888777542 11113322222 222222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDV--GRTVDADRLR 423 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~ 423 (491)
-.+....-..+.........-++...|..++.+|... .+++.....|
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 2222222233333333322234667788888887653 3344444444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.22 E-value=1.5 Score=33.99 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHCC
Q 011201 364 SVIACTTLIEGLRRLRKG------VEASGLMEKMLKEGILPDSV----TFNCLLE---DLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~---~~~~~g~~~~a~~~~~~~~~~g 430 (491)
|..+|-..+....+.|+. ++..++|++.... +.|+.. .|.-|-- .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555665 5666666666553 444310 0110000 1223477888888888776542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 431 LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 431 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
-+ =...|.....--.+.|+++.|.+++.+.+..+-+| ...+...+.
T Consensus 91 Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 22 25556666666677888888888888888655443 333444333
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=3.9 Score=38.70 Aligned_cols=264 Identities=8% Similarity=0.041 Sum_probs=148.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHH--HHHHHHHH
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSI--YNVLINGF 200 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~ 200 (491)
++++.|.+.+..+.+.... . ........+...++..|.+.|+++...+.+..+.+..|..+...+ -+.++...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~-~----~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQ-A----SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSS-S----CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh-c----cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5667776666544432111 0 011233577888999999999999998888877765443222221 22233333
Q ss_pred HhcCCHHH--HHHHHHHHhh---CCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHH
Q 011201 201 VKCREFDK--ALGFYDRMVR---DRVKP---DVVTFNILISGFCRNKKFDLALGLFREMREK--GCNPN---VVSFNTLI 267 (491)
Q Consensus 201 ~~~~~~~~--A~~~~~~m~~---~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~li 267 (491)
......+. -..+.+.+.. ..+.. .......|...|...|++.+|.+++.++... |.... ...+...+
T Consensus 105 ~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33333332 2222222211 11111 1123356788899999999999999998654 22211 34677788
Q ss_pred HHHHcCCCHHHHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhH-----HH
Q 011201 268 RGFFGERKFDEGVNMAYEMIE----LGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFSRR-GVLPKDFDY-----FG 335 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~-----~~ 335 (491)
+.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ....+...+ ..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 899999999999999998743 222222 245567777888899999998888777543 111122111 12
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL--RKGVEASGLMEKML 392 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~ 392 (491)
++.... .+....-..++.........++...|..++.+|... .+++.+.+.|....
T Consensus 265 v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 265 VYFLVL-SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHh-CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 222222 221122222333333322234677888888888754 35666666665433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.78 E-value=0.38 Score=36.14 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHH
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI---ALEVVDELWKKGNL-PSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
...+.+-+......|. ++..+-..+..++.++.+... ++.+++++...+.. -.....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444333 344445555555555554443 55666665554310 122233344455666666666666
Q ss_pred HHHHHHH
Q 011201 387 LMEKMLK 393 (491)
Q Consensus 387 ~~~~m~~ 393 (491)
.++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.50 E-value=1.7 Score=46.93 Aligned_cols=147 Identities=12% Similarity=0.018 Sum_probs=88.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH--------------------HHc
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM--------------------IEL 289 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--------------------~~~ 289 (491)
.++..+.+.+..+-+.++..-.. -+...--.+..+|...|++++|.+.|++. ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45555666666666655443222 14444445556666777777777777542 111
Q ss_pred C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011201 290 G--CEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK----DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP 363 (491)
Q Consensus 290 ~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 363 (491)
. ...-..-|..++..+-+.|.++.+.++-...++....-+ ...|..+.+.+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 1 111234467777888888888888877776655432212 125677888888888888888888777765443
Q ss_pred CHHHHHHHHHHHHhcCChHH
Q 011201 364 SVIACTTLIEGLRRLRKGVE 383 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~ 383 (491)
......|+..+|..|..+.
T Consensus 971 -~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHhCCChhh
Confidence 4556667776666665443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.43 E-value=1.3 Score=34.24 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=22.1
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
+|+++|.++|+.+.+.+-.. ...|-....--.++|+...|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 34444444444443322222 3334333444444555555555555544443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.43 E-value=1.2 Score=45.09 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=40.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
-|...|+++.|.++-++....- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3556788888888888877752 445788888888888888888888888877
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.90 E-value=0.00023 Score=66.21 Aligned_cols=264 Identities=10% Similarity=0.044 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
+.+|..+..+..+.+++.+|++-|- + ..|...|..+|....+.|.+++-.+.+...++..- +...=+.|+.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---k----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---K----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---C----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---h----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3678888999999898888866542 1 24677788899999999999998888876554422 4444567889
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|++.+++.+-.+++. .||..-...+..-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 9999988776554432 35666677788888888888888766655422 2233334445555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.-+ -.-+..||..+-.+|...+++.-|.-.--.+.-. ......++..|...|.+++.+.+++.-..
T Consensus 189 AVdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 532211 1235566777777777777776665443333321 11223455667777777777777776553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK-GLD------PDGMTYHILVSGYTRENRRKEGE 455 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~------p~~~~~~~li~~~~~~g~~~~A~ 455 (491)
. -+.....|+-|.-.|++- +.++..+-++..-.+ +++ -....|.-++-.|++-..++.|.
T Consensus 258 l-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred C-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2 234566677666666654 333333332221111 111 02345666777777666666554
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.37 E-value=2 Score=43.42 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
+..-|..|.....|.++++||.+.|+..+.. .-+...+..|++.|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 3445888888899999999999999999954 568999999999998876
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.11 E-value=4.7 Score=43.45 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPN----VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVD 303 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 303 (491)
|..++..+-+.+.++.+.++-....+..-.-+ ...|..+.+++...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 34444555555555555554444333211111 113455555555555555555555544433222 233344444
Q ss_pred HHHhcC
Q 011201 304 GLCNEG 309 (491)
Q Consensus 304 ~~~~~g 309 (491)
.+|..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444433
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.62 E-value=1.1 Score=33.66 Aligned_cols=85 Identities=15% Similarity=0.002 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVD---ADRLRLLASTKGLDP--DGMTYHILVSGYTRENRRKEGEN 456 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~ 456 (491)
..+.+-|.+....|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444333 555555556666666665544 666666665543 12 22233334556777777777777
Q ss_pred HHHHHHHCCCCCCH
Q 011201 457 LVNEMLDEGFIPDL 470 (491)
Q Consensus 457 ~~~~m~~~~~~p~~ 470 (491)
.++.+++. .|+.
T Consensus 96 ~~~~lL~~--eP~n 107 (126)
T 1nzn_A 96 YVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHHh--CCCC
Confidence 77777743 4543
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.12 E-value=1 Score=41.83 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=74.6
Q ss_pred HHHHHHHHHH---HHcCChhHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCChhhH
Q 011201 155 RIFHFAVNAF---VKANRMNDGLLAFEAMRKLIDGRP--SVSIYNVLINGFVKCREFD-KALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 155 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~ 228 (491)
..|..++..- ...|+.+.|.+.+++........+ +.. ...|- ....-++++.. ...
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~-------~a~ 174 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV-------LAH 174 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH-------HHH
Confidence 3444444332 345788888888888876532221 111 01111 11122222211 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE-----LGCEFSSVTCEI 300 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 300 (491)
..++..+...|++++|...+..+.....- +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 44666777788888888777777665332 667788888888888888888888777643 478777665443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.02 E-value=1.1 Score=41.51 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE-----KGCNPNVVSFNT 265 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 265 (491)
...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456666777777777777777766543 23666777777778888888887777777643 377777665433
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.41 E-value=4.4 Score=28.80 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
-++.+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+. .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3555555666666667777777777777777777777777776665542 22344555554
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.75 E-value=13 Score=33.31 Aligned_cols=167 Identities=10% Similarity=0.033 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL----FREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~li~ 268 (491)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ ++-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556667888899999998875532 224455665544443 355556678888887777777
Q ss_pred HHHcCCCHH-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 269 GFFGERKFD-EGVNMAYEMI----ELG--CEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 269 ~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
.+.....-+ .-..+.++++ +.| ..-|......+...|.+.+++.+|+..|- .|-.++...|..++..+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 776554321 1233344333 222 33466777788889999999999887772 232222244544444333
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+.+...+ .+...-.+++ -|.-.++...|..+++...+
T Consensus 179 ~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 3332111 1222222233 34556788888777665543
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.25 E-value=5.8 Score=29.91 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=39.2
Q ss_pred CCHhhHHHHHHHHHcCCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 328 PKDFDYFGLVEKLCGEGN---AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
++..+-..+..++.++.+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 344444445555555543 335666666666554222344445555666777777777777777666 3444
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.89 E-value=0.0033 Score=58.71 Aligned_cols=243 Identities=10% Similarity=0.044 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
.+|..+.++..+.+++.+|++.|- +.+. +..|..++.+..+.|.+++-+..+.-.++. ..+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---kA~D-------------ps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke 115 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---KADD-------------PSSYMEVVQAANTSGNWEELVKYLQMARKK---ARE 115 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---CCSC-------------CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCS
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---hCCC-------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcc
Confidence 456777777777777766654431 1111 123566777777888888887777766654 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---------------
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK--------------- 254 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------- 254 (491)
...=+.|+-+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+...
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3444677888888877655433321 355555566666666666666666666544211
Q ss_pred -----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 255 -----GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 255 -----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
.-.-++.||-.+-.+|...+.+.-|.-.--.++-. ..-...++..|-+.|.+++.+.+++.-... -...
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cchh
Confidence 01225677888888888888777665443333322 112234566677778887777777766532 1235
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcCChHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-------SVIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~ 385 (491)
..+|+-|.-.|++- +.++.++-++....+=..| ....|..++-.|++-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 56677777777765 3444444443322211111 2345677777777767766554
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.75 E-value=17 Score=33.53 Aligned_cols=297 Identities=10% Similarity=0.004 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCChhhH-
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP---SVSIYNVLINGFVKC-REFDKALGFYDRMVRDRVKPDVVTF- 228 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~- 228 (491)
+.+...+...|.+.|+.++..+++.......+.-+ .......|++.+... +..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35677889999999999999999988765433323 344567888888765 4445455555544432111 22334
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCChh
Q 011201 229 -----NILISGFCRNKKFDLALGLFREMREKGCNPN-----VVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFSSV 296 (491)
Q Consensus 229 -----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~ 296 (491)
.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.++..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578889999999999999998877411112 344566677888999999999999887643 2323333
Q ss_pred hHHHH----HHHHH-hcCCHHHHHHHHHHHHhC-C-CC-C---CHhhHHHHHHHHHcCCCHhHHHHHHH-HHHHcCCCCC
Q 011201 297 TCEIL----VDGLC-NEGRVLKACELVIDFSRR-G-VL-P---KDFDYFGLVEKLCGEGNAGIALEVVD-ELWKKGNLPS 364 (491)
Q Consensus 297 ~~~~l----l~~~~-~~g~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~ 364 (491)
+...+ .-.+. ..+++..|...|-+..+. . .. | +...|..+.... .++..+...++. .....-..|+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCcc
Confidence 32221 22345 789999998887765422 1 10 1 112233222222 233333323222 1111113355
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSG 444 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 444 (491)
...+..++.+| ..+++.+..+++..... .+..|......+-..+-+ -.+.+ +..+.+ +-...++..+...
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--Ir~~~---L~~i~~---pYsrIsl~~iA~~ 325 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--MLEQN---LCRIIE---PYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--HHHHH---HHHHHT---TCSEEEHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--HHHHH---HHHHhH---hhceeeHHHHHHH
Confidence 66666666665 45677766666665433 244455422111110000 00011 111111 1133455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 011201 445 YTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~~ 465 (491)
+.- ..+++...+-+|+..|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 433 6788888888888764
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.22 E-value=5.9 Score=28.14 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
.-+..+-++.+......|++....+.+.+|.+.+++.-|.++|+-.+.+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3355556666666666777777777777777777777777777766554 2223334555544
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.37 E-value=7.3 Score=29.36 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
-+..+-++.+...++.|+.....+.+++|.+.+++..|.++++-++.+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3555556666666777788888888888878888888888777766542 334555665553
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.66 E-value=7.1 Score=30.78 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-------SIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
+..-+..+...|.++.|+-+.+.+....+..+++ .++..+.+++...+++..|...|++..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4445777888899999988888766654334442 3566778899999999999999998643
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.73 E-value=11 Score=28.44 Aligned_cols=74 Identities=5% Similarity=-0.128 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 396 ILPDSVTFNCLLEDLCDVGRT---VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 396 ~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
-.|+..+--.+..++.+..+. .+++.+++.+.+.+..-....+--|.-++.+.|++++|.+..+.+. .+.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCCH
Confidence 345555555555555555443 3455566666554311123334445556677777777777777776 3455543
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.32 E-value=22 Score=31.56 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG----LFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~li~ 268 (491)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-..+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45666678888889888888765322 2445566655444 3455556678888888777777
Q ss_pred HHHcCCCHH-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011201 269 GFFGERKFD-EGVNMAYEMI----ELG--CEFSSVTCEILVDGLCNEGRVLKACELV 318 (491)
Q Consensus 269 ~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 318 (491)
.+..-..-+ .-.+++++++ +.| ..-|......+...|.+.|++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 765533211 1233444443 222 2236677788888899999998888766
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.23 E-value=12 Score=28.59 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=40.9
Q ss_pred CCCHhhHHHHHHHHHcCCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 327 LPKDFDYFGLVEKLCGEGN---AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
.++..+-..+..++.++.+ ..+++.+++++...+..-.-...-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555555555555544 345666666666644322333444555667777777777777777776 3454
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.92 E-value=3.3 Score=35.93 Aligned_cols=45 Identities=11% Similarity=-0.022 Sum_probs=22.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILPDSV---TFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~ 422 (491)
..++.....++++.+.+.|..++.. -.+. +...++.|+.+-+..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRL 238 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-HHHHHHTTCHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHH
Confidence 4455545556666666666554421 1122 2333556665544433
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.90 E-value=5.8 Score=31.28 Aligned_cols=127 Identities=8% Similarity=0.091 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV- 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 190 (491)
+-.-++.+...+.++.|..+...+....... ..+++...-..++..+.+++...|++.+|...|++..+....-+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~--~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN--PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC--cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455777888889998888877755421100 0111111123567788999999999999999999975542221111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
.++..+- ....... ......+...---+..||.+.+++++|+.+++.+..
T Consensus 101 s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Ccccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110 0000000 001122334444466778888888888888776543
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.59 E-value=9.1 Score=28.85 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=46.1
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
|.-+..+-++.+....+.|++....+.+.+|.+.+++.-|.++|+-.+.+ +.+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456666677777778888888888888888888888888888877765 3334455666654
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.33 E-value=11 Score=35.37 Aligned_cols=97 Identities=11% Similarity=-0.063 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCChhhH--H
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKG--CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL---GCEFSSVTC--E 299 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~--~ 299 (491)
++..+...|.+.|++++|.+.|.++.... ..--...+-.+|+.+...+++..+...+.+.... +..++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666777777777777777766542 2223455666677777777777777777766432 222211110 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 300 ILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111122345777777777766543
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.96 E-value=27 Score=30.94 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhCCCCCChhhHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALG----FYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~li 232 (491)
|..+..-|.+.+++++|++++..--. .+.+.|+...|-+ +++.+.+.+++++.....-++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44566778889999999888654322 1233455444333 344555567777777777777
Q ss_pred HHHHhcCChh-HHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 233 SGFCRNKKFD-LALGLFREMREK----G--CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 233 ~~~~~~~~~~-~A~~~~~~m~~~----g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
..+.....-+ .=.++++++.+. | ..-+......+...|.+.|++.+|...|-. |-.-|...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6665533211 223444444322 1 123677888888999999999998876642 2111234444444333
Q ss_pred Hhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 306 CNE---GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 306 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
... |...++ +.+ ....+-.|.-.|+...|..+|+...+
T Consensus 176 ~~~~~~~~~~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333 443332 111 12223345567888888888887653
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.40 E-value=8.7 Score=33.05 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=76.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcC
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILISGFCRNK 239 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~ 239 (491)
..+.+.|++++|++....-.+. .+-|...-..|+..+|-.|+++.|.+-++...+.... |-...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3466889999999888877764 2668888999999999999999999999888765211 122344444443
Q ss_pred ChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHc
Q 011201 240 KFDLALGLFREMREKGCNP-----NVVSFNTLIRGFF--GERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 289 (491)
+..=.+....+-.| ...-...++.+.. ..|+.++|.++-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222211 2333344555444 469999999999888765
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.10 E-value=30 Score=30.93 Aligned_cols=167 Identities=9% Similarity=0.014 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhCCCCCChhhHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALG----FYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~li 232 (491)
|..+..-|.+.+++++|++++..--. .+.+.|+...|-+ +++-+.+.++++|.....-++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44556678899999999887654322 1233344433333 334444456666766666666
Q ss_pred HHHHhcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 233 SGFCRNKKFD-LALGLFREMRE----KG--CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 233 ~~~~~~~~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
..+.....-+ +=.++.+++.+ .| ..-|......+...|.+.+++.+|...|- .|-.+....|..++--+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6665544321 11223333322 12 23366777788888999999988887763 23333335554444333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 306 CNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
...+...+ .+.+ ....+-.|...+++..|..+++...+
T Consensus 178 ~~~~~~~e--------------~dlf-iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHT--------------APLY-CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGG--------------HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33222111 1222 22334445567888888887776654
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.51 E-value=19 Score=29.42 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 380 KGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP 433 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 433 (491)
...++.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3456666666666664432 24455566666666666666666666666665555
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.10 E-value=23 Score=32.09 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK--GVEASGLMEKMLKEGILPDSV 401 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 401 (491)
...++.-|...|+.++|.+.++++...... ......++..++-+.++ .+...+++..+...|+-....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 466777777788888888888877532211 23344455555554332 345667777777666554333
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.63 E-value=33 Score=32.10 Aligned_cols=97 Identities=4% Similarity=-0.109 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCChh----h
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLI-DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVR---DRVKPDVV----T 227 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~----~ 227 (491)
+...+...|.+.|++++|.+.|.++...- +...-...+-.++..+...+++..+...+++... .+-.++.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567788888888888888888877642 2234466777888888888888888888877643 22222221 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
|.. ..+...+++..|.+.|-+....
T Consensus 213 ~~g--l~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYG--IHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHH--HGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhChHHHHHHHHHHHhcc
Confidence 111 1234567888888888776544
No 267
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=76.09 E-value=9.3 Score=32.03 Aligned_cols=27 Identities=4% Similarity=-0.084 Sum_probs=14.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKP 223 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p 223 (491)
+...++.|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 444455566666666666555544433
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.64 E-value=25 Score=26.90 Aligned_cols=72 Identities=6% Similarity=-0.099 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011201 397 LPDSVTFNCLLEDLCDVGRT---VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
.|+..+--.+..++.+..+. .+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+++. +|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 34555555555555555433 345555555554321112222333445666666666666666666643 4543
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.68 E-value=31 Score=28.13 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 203 CREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
++...++.++|..|...|+.-. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445677777777766655433 2345555666666777777777777766665555
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.30 E-value=8.3 Score=33.28 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=28.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 011201 411 CDVGRTVDADRLRLLASTKGLDPDGMT--YHILVSGYTRENRRKEGENLVN 459 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 459 (491)
+..+......++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 456666556677777788887665421 1123344456677665544444
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.04 E-value=64 Score=29.67 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHH-
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKP---DVVTFNILISGFCRN-KKFDLALGLFREMREKGCNPNVVSF- 263 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~- 263 (491)
..+...|...|.+.|+.++..+++...... +.-+ .......+++.+... +..+.-.++..+..+..-. ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 455667788888888888888888765432 1111 122344555555543 2233333333333321100 11122
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 264 -----NTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-----VTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 264 -----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
..++..|...|++.+|.+++.++.+.=-..|. .+|..-+..|...+++.++...+...
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 13455556666666666665555543111111 22333334444455555555554443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.92 E-value=25 Score=24.90 Aligned_cols=78 Identities=18% Similarity=0.058 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVN 459 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 459 (491)
..++|..+-+-+...+. ...+-.+=+..+.+.|++++|..+.+.. ..||.+.|-.|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44566666655555432 1111112223456667777776664322 2566666655532 45666666666666
Q ss_pred HHHHCC
Q 011201 460 EMLDEG 465 (491)
Q Consensus 460 ~m~~~~ 465 (491)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665443
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.90 E-value=25 Score=24.87 Aligned_cols=78 Identities=14% Similarity=-0.015 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVN 459 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 459 (491)
..++|..+-+-+...+. ...+-.+=+..+.+.|++++|..+.+.. ..||.+.|-.|- -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 44566666666555432 1111112223456677777776654322 256776666553 346677676666666
Q ss_pred HHHHCC
Q 011201 460 EMLDEG 465 (491)
Q Consensus 460 ~m~~~~ 465 (491)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.02 E-value=64 Score=29.20 Aligned_cols=69 Identities=9% Similarity=-0.067 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 011201 368 CTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR--TVDADRLRLLASTKGLDPDGMT 437 (491)
Q Consensus 368 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~p~~~~ 437 (491)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+-.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 466788888889999999999888532111 13344455555554333 3446667777777665444333
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.18 E-value=28 Score=28.97 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=14.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011201 232 ISGFCRNKKFDLALGLFREMREKGCNPN 259 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~m~~~g~~p~ 259 (491)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344555666665555555555544433
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.06 E-value=41 Score=29.71 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF--DLALGLFREMRE 253 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~ 253 (491)
...++.-|...|+.++|...++++..... .......++......++- +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 46788889999999999999998743221 122223344444444432 345566666653
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.93 E-value=46 Score=25.73 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011201 418 DADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 418 ~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
++..+|..|..+|+... ...|......+...|++++|.++|+.-++.+-+|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 35666666666655433 344555556666666666666666666666655543
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.90 E-value=37 Score=28.61 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=49.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
--+..+....++++|++++++..+....-++ .......+..-.....-.-+..+.+++.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3477889999999999999987764211111 11112223222333333334444444422 234444555566
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~ 252 (491)
.+.+.|+-++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6666777777777666543
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.72 E-value=27 Score=33.36 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCh--hhH-HHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPDV--VTF-NILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~-~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
...+|.++..|...+.++.|..+..+..---. .+|. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45688888899999999999999887641100 1111 122 22345556678888888888887664
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.11 E-value=11 Score=31.52 Aligned_cols=15 Identities=7% Similarity=-0.072 Sum_probs=6.6
Q ss_pred HhcCCHHHHHHHHHH
Q 011201 446 TRENRRKEGENLVNE 460 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~ 460 (491)
.+.|+.+-+.-+++.
T Consensus 218 ~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 218 KQRKNVWMINHLQEA 232 (240)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHh
Confidence 444554444444433
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.67 E-value=35 Score=28.79 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=12.7
Q ss_pred HHHHHcCCCHhHHHHHHHHHHH
Q 011201 337 VEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~ 358 (491)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5555556666666666655443
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.21 E-value=47 Score=24.84 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011201 301 LVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~ 321 (491)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444445555555444444
No 283
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=61.36 E-value=39 Score=27.03 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVV---TFNILISGFCR-NKKFDLALGLFREMREKGCNPN 259 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~ 259 (491)
+.+...+..|+.+.-.++.+.+.+.|..+|.. -++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34455556666665566666666776665543 22223222211 2233344555555666665544
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.17 E-value=27 Score=27.51 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 383 EASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 435 (491)
+..++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35566666666644322 445555566666666777777776666666555543
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.45 E-value=23 Score=30.80 Aligned_cols=143 Identities=5% Similarity=-0.069 Sum_probs=60.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcC
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVV---SFNTLIRGFFGE 273 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~ 273 (491)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..+ .+.|..++.. -++. +...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcH-HHHHHHc
Confidence 334445566554444433 33333322222344445556665544333 3344443321 1122 2233445
Q ss_pred CCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHcCCCHhHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSV---TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDF-DYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a 349 (491)
|+.+-+. .+.+.|..++.. .+...+...+..|..+-+ +.+.+.|...... .-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~----~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVK----LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHH----HHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHH----HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 5554333 333334433321 112344445556665433 3333444332111 233444455566776666
Q ss_pred HHHHHHH
Q 011201 350 LEVVDEL 356 (491)
Q Consensus 350 ~~~~~~m 356 (491)
..+++.-
T Consensus 178 ~~Ll~~g 184 (285)
T 3kea_A 178 ILLLDYM 184 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 6555543
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.42 E-value=32 Score=32.84 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
.++.+++.|...+.++.|..++.+..-.... .+......-+..+...+.-.+++.+|.+.|....+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~------~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTD------VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCccc------CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566666666667777777777665311000 11111122233445666666777777666666554
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.89 E-value=54 Score=24.49 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRM 216 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m 216 (491)
+.++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444444444444444444444
No 288
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=58.51 E-value=59 Score=25.95 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=43.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHH-cCC
Q 011201 200 FVKCREFDKALGFYDRMVRDRVKP-DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVV---SFNTLIRGFF-GER 274 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~-~~g 274 (491)
.++.|+++....++.. ++.. +...-.+.+...+..|+.+.-.++.+-+.+.|..++.. -++.|..++. ...
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3455666665555442 2110 10111234445556666665566666667776655532 1222222222 122
Q ss_pred CHHHHHHHHHHHHHcCCCCCh
Q 011201 275 KFDEGVNMAYEMIELGCEFSS 295 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~ 295 (491)
+.....++.+.+.+.|..++.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSS
T ss_pred chhhHHHHHHHHHHCCCCCCc
Confidence 334445566666666655443
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.36 E-value=50 Score=25.54 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRM 216 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m 216 (491)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444444445555555544444
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.41 E-value=67 Score=24.82 Aligned_cols=50 Identities=6% Similarity=0.090 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 209 ALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 209 A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
+.++|..|...|+--.. .-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555555554443222 233444444445555555555555544444333
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.64 E-value=13 Score=31.60 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChh-------hHHHHHHHHH--hcCChhHHHHHHHHH
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDVV-------TFNILISGFC--RNKKFDLALGLFREM 251 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~--~~~~~~~A~~~~~~m 251 (491)
+...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334445566666666666555554444422 2233333321 456665555555543
No 292
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=55.50 E-value=1.1e+02 Score=26.97 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHH--HcCCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHH
Q 011201 302 VDGLCNEGRVLKACELVIDFSRRGVLPKD---FDYFGLVEKL--CGEGNAGIALEVVDELWKKGNLPSV---IACTTLIE 373 (491)
Q Consensus 302 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~ 373 (491)
+...+..|+.+-+..++++ .|..++. .-.+.+..+. ...++.+ .+.+.+.+.|..++. .-.+. +.
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~~~~~~~---~i~~lLl~~gad~n~~d~~g~t~-L~ 244 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVE---AITHLLLDHGADVNVRGERGKTP-LI 244 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHSCTTTHH---HHHHHHHHTTCCTTCCCGGGCCH-HH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHcCcccHH---HHHHHHHHCCCCCCCcCCCCCCH-HH
Confidence 3344566777655544432 3433321 1122222222 2233333 344445566654432 22223 33
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 374 GLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENR 450 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 450 (491)
..+..|..+.+..++.. .|..++ ..-.+.|..+ ++.|+.+ +.+.+.+.|..+|..+ . +..-++.|+
T Consensus 245 ~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~ 313 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYD 313 (337)
T ss_dssp HHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCC
Confidence 44566776655444321 233332 2222334433 5667654 4445567787777654 3 333355666
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 011201 451 RKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 451 ~~~A~~~~~~m~~~~~~p~~ 470 (491)
.+ +.+.+++.|-.||.
T Consensus 314 ~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 314 HS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HH----HHHHHHHTTCCC--
T ss_pred HH----HHHHHHHCcCCCCC
Confidence 53 55667777877765
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.90 E-value=46 Score=25.74 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 011201 300 ILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555555444
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.98 E-value=42 Score=29.05 Aligned_cols=186 Identities=8% Similarity=-0.096 Sum_probs=89.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhc
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVT--CEILVDGLCNE 308 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~ 308 (491)
.+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3445566788776555554 44433332223344555667776544 44455565544321 12234445667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDF---DYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-SVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a 384 (491)
|+.+-+..+++ .|..++.. -+.+.+...+..|+.+-+.. +.+.|... +...-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 77765555544 34333322 11334455566777654444 44444332 110223334445567887766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMT 437 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 437 (491)
.-+++.-..-... |..-.+..+...+..|+.+ +.+.+.+.|..++...
T Consensus 178 ~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 178 ILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTT
T ss_pred HHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCC
Confidence 6665543332211 1111111223334556543 5555677787776553
No 295
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.08 E-value=1.1e+02 Score=26.20 Aligned_cols=114 Identities=17% Similarity=0.079 Sum_probs=72.7
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD----SVTFNCLLEDLCDV 413 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~ 413 (491)
....+.|+++++++....-.+..+. |...-..++..+|-.|+++.|.+-++...+. .|+ ..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 3456778888888888887777654 7777788888889999999998888877764 344 3344444443
Q ss_pred CChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 011201 414 GRTVDADRLRLLASTKGLDP-----DGMTYHILVSGYT--RENRRKEGENLVNEMLDE 464 (491)
Q Consensus 414 g~~~~a~~~~~~~~~~g~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 464 (491)
+..-.....-+-.| ...-...++.++. ..|+.++|.++-+++.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222222 2233445555544 469999999988887643
No 296
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=50.96 E-value=1.1e+02 Score=27.67 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCC
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS---VSIYNVLINGFVKCRE--FDKALGFYDRMVRDRV 221 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~ 221 (491)
.....++.-|...|+.++|...++++.. |+ ......++......++ -+.+-.++..+...|+
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~-----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRA-----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTC-----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCC-----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 4567889999999999999999998853 32 2233334444444433 2445566666666543
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.82 E-value=32 Score=28.56 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 382 VEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP 433 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 433 (491)
++..++|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455555555554332 23445555555555555555555555555554444
No 298
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.65 E-value=64 Score=22.85 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=46.1
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI--NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDL 243 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 243 (491)
-..+.++|..+-+.+... ++. -.-.|| ..+...|++++|..+.+.+. .||...|-.|.. .+.|-.++
T Consensus 18 G~H~HqEA~tIAdwL~~~----~~~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~ 86 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERL----GQD-EAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAA 86 (115)
T ss_dssp TTTCHHHHHHHHHHHHHT----TCH-HHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHH
T ss_pred cchHHHHHHHHHHHHHhC----CcH-HHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHH
Confidence 345567776666666653 232 222233 45566777777777655443 567777755543 36666666
Q ss_pred HHHHHHHHHHcC
Q 011201 244 ALGLFREMREKG 255 (491)
Q Consensus 244 A~~~~~~m~~~g 255 (491)
+...+..+...|
T Consensus 87 le~rL~~la~sg 98 (115)
T 2uwj_G 87 LDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHhCC
Confidence 666666666554
No 299
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.38 E-value=65 Score=22.86 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=47.7
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI--NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD 242 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 242 (491)
.-..+.++|..+-+.+... ++. -.-.|| ..+...|++++|..+.+.+. .||...|-.|.. .+.|-.+
T Consensus 18 TG~H~HqEA~tIAdwL~~~----~~~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s 86 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLK----GEE-EAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGS 86 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHT----TCH-HHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHH
T ss_pred ccchHHHHHHHHHHHHHhC----CcH-HHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHH
Confidence 3445667777777666654 232 222333 45566777888777765543 577777765544 3566666
Q ss_pred HHHHHHHHHHHcC
Q 011201 243 LALGLFREMREKG 255 (491)
Q Consensus 243 ~A~~~~~~m~~~g 255 (491)
++...+..+...|
T Consensus 87 ~le~rL~~la~sg 99 (116)
T 2p58_C 87 ALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 6666666666554
No 300
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.09 E-value=50 Score=22.03 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 425 LASTKGLDPDGMTYHILVSGYTREN-RRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 425 ~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34556666655443 3444444443 44556777777776665667777777777777777654
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.73 E-value=92 Score=24.42 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 209 ALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 209 A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
+.++|..|...|+--.. ..|......+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 45556666655554332 234444555555666666666666655555444
No 302
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=48.95 E-value=79 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=9.9
Q ss_pred HHcCCCHhHHHHHHHHHHHcC
Q 011201 340 LCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 340 ~~~~g~~~~a~~~~~~m~~~~ 360 (491)
.+..|+.+.+.++++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 344455554444444444443
No 303
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.61 E-value=2.1e+02 Score=28.20 Aligned_cols=319 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (491)
+....+.|++..+..+...+... |....+=-..+..-......++...++++.... +.....-+.
T Consensus 13 a~~a~~~~~~~~~~~l~~~l~~~------------pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~---p~~~~Lr~~ 77 (618)
T 1qsa_A 13 IKQAWDNRQMDVVEQMMPGLKDY------------PLYPYLEYRQITDDLMNQPAVTVTNFVRANPTL---PPARTLQSR 77 (618)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS------------TTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhhcCC------------CcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCC---hhHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK 275 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 275 (491)
-+..+.+.+++...+.++.. ... +...-.....+....|+.++|.....++-..|-. .......++..+.+.|.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-~p~----~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-KPG----TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-CCS----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHhccC-CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Q ss_pred HHH--HHHHHHHHHHcCCCCChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011201 276 FDE--GVNMAYEMIELGCEFSSVTCEILVDG---------LCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 276 ~~~--a~~~~~~m~~~~~~~~~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 344 (491)
+.. ...-++.+...| +...-..++.. -....-......+.......+..+.......+.-.-....
T Consensus 152 lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~ 228 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQ 228 (618)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhc
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGV---EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
+.+.|...+..........+...+..--..-.+.-... ++...+..... ...+.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHHHHCCCHHHHHH
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
.|+.|......-+...|- +..++...|+.++|..+|+.+
T Consensus 307 ~~~~l~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYW-QADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHSCTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHccccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHH
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.71 E-value=78 Score=24.31 Aligned_cols=58 Identities=7% Similarity=0.057 Sum_probs=27.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 251 MREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 251 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|.--.++.+.+.|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555532 2333444444444445556666666665554445444444444444444
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.29 E-value=40 Score=27.78 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFY 213 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~ 213 (491)
.+...+..|+.+-+..++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 344555566654443333
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.96 E-value=41 Score=26.88 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=3.8
Q ss_pred cCCHHHHHHH
Q 011201 203 CREFDKALGF 212 (491)
Q Consensus 203 ~~~~~~A~~~ 212 (491)
.|+.+.+..+
T Consensus 15 ~g~~~~v~~l 24 (201)
T 3hra_A 15 QRDTKKVKEI 24 (201)
T ss_dssp TTCHHHHHHH
T ss_pred hccHHHHHHH
Confidence 3444333333
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.33 E-value=22 Score=28.56 Aligned_cols=15 Identities=0% Similarity=0.049 Sum_probs=8.4
Q ss_pred HHhcCChhHHHHHHH
Q 011201 235 FCRNKKFDLALGLFR 249 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~ 249 (491)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566666555554
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.12 E-value=1.1e+02 Score=23.92 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 011201 204 REFDKALGFYDRMVRDRVKP--DVVTFNILIS-G-----FCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 204 ~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~A~~~~~~m~~ 253 (491)
|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777777776665543333 3344555555 2 3456777777777766554
No 309
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=44.71 E-value=1.2e+02 Score=24.48 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 011201 274 RKFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~ 293 (491)
.+.+.|+-++-+|++.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444555555554444433
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.60 E-value=2e+02 Score=26.88 Aligned_cols=37 Identities=14% Similarity=-0.159 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 344 (491)
.++.+.|+.++..|.+.|..|....-..++.+.-..|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4566777777777777666654433333333333333
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.60 E-value=1e+02 Score=23.57 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=39.2
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011201 215 RMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276 (491)
Q Consensus 215 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 276 (491)
.+.+.|+.++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 35566766433 34456666666677778888888888877666777766666666666543
No 312
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.55 E-value=1.3e+02 Score=24.42 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHhCC
Q 011201 309 GRVLKACELVIDFSRRG 325 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~ 325 (491)
.+.+.|+.++..|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.52 E-value=1.3e+02 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=17.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
+..+.+.|+-++-+|++.| .|.-..-..++-+.-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE 59 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYE 59 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 3455666666666666666 443333333333333
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.41 E-value=55 Score=29.37 Aligned_cols=25 Identities=8% Similarity=0.317 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMV 217 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~ 217 (491)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777777777777777664
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.17 E-value=76 Score=24.17 Aligned_cols=41 Identities=7% Similarity=-0.110 Sum_probs=17.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
.+...+..-.|.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 30 ~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333334445555555544444334444333334443333
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.03 E-value=1e+02 Score=23.13 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444443334433333333333333
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.80 E-value=1e+02 Score=23.41 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=40.5
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011201 215 RMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276 (491)
Q Consensus 215 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 276 (491)
.+.+.|+..+.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 455677765543 3345556666667778888888888877666777766666666666543
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.62 E-value=1.9e+02 Score=25.43 Aligned_cols=60 Identities=2% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE--FDKALGFYDRMV 217 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~ 217 (491)
.....++.-|...|+.++|...++++..- . -.......+|......++ -+.+-.++..+.
T Consensus 4 k~~~~ii~EYf~~~d~~Ea~~~l~el~~p-~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDTNEVAEMLRDLNLG-E--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCG-G--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCc-c--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45677899999999999999999887531 1 122223344444444443 334555666664
No 319
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.48 E-value=2.9e+02 Score=27.47 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG--- 342 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 342 (491)
....+.-.|+++.|.+++-.. ...+.+.+.+.+.-|.-.+ .... +......-...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~----lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSS----TRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCc----ccccCCCcccccHHHHHHHHHHHhh
Confidence 445555668888888876654 2334444444444332222 1111 1111000112336777777765
Q ss_pred CCCHhHHHHHHHHH
Q 011201 343 EGNAGIALEVVDEL 356 (491)
Q Consensus 343 ~g~~~~a~~~~~~m 356 (491)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46777888777666
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=40.39 E-value=2.1e+02 Score=25.88 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPD----VVTFNILISGFCRNKK--FDLALGLFREMREKGCN 257 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~ 257 (491)
....+|.-|...|+.++|.+.++++.. |+ ...+.. +......++ -+.+-.++..+...|+-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~-i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKV-IILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHH-HHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 357788889999999999999998853 32 223333 333333332 24456666666666554
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.96 E-value=1.1e+02 Score=27.46 Aligned_cols=65 Identities=3% Similarity=0.046 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCC
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVRDRV 221 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~ 221 (491)
.....++.-|...|+.++|...++++..-. .....+...+..++-+.. ..+.+..++..+.+.|+
T Consensus 12 k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 12 KKSKAIIEEYLHLNDMKEAVQCVQELASPS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 456788999999999999999998885310 011222222222322211 23456667777766543
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.56 E-value=77 Score=23.76 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=24.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 251 MREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 251 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
+.+.|++.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+.+.|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33445443332 223333444433 44455555555555544444444443444444433
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.38 E-value=33 Score=29.00 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=33.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--cCCCHHHHHHHHHHH
Q 011201 232 ISGFCRNKKFDLALGLFREMREKGCNPNVVS-------FNTLIRGFF--GERKFDEGVNMAYEM 286 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~a~~~~~~m 286 (491)
+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4445677888888888887777766555332 234444432 567766666665554
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.05 E-value=1.2e+02 Score=25.14 Aligned_cols=51 Identities=14% Similarity=-0.054 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 348 IALEVVDELWKKGNLP-SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP 398 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 398 (491)
.+.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555543321 23334444444455555555555555555544444
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.81 E-value=1e+02 Score=23.54 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=16.5
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444444
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.38 E-value=1.2e+02 Score=23.59 Aligned_cols=57 Identities=9% Similarity=-0.051 Sum_probs=27.4
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 011201 323 RRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK--GNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 323 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 380 (491)
+.|.+.+.. -..++..+...++.-.|.++++.+.+. +...+..|..--+..+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345444332 334444444555555555566555554 444444444444444544443
No 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.77 E-value=95 Score=25.36 Aligned_cols=154 Identities=8% Similarity=-0.066 Sum_probs=79.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCChhhHHHHHH
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGR---PSVSIYNVLINGFVKCREFDKALGFYDRMVRDR----VKPDVVTFNILIS 233 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~ 233 (491)
+...++.|+.+....+++. .+.. .|..-+ +.+...+..|+.+-+..+++.-.... ...|..-++ .+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~----~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~ 80 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF----EGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALH 80 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT----TCSCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHh----cCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHH
Confidence 3344567776655555443 1211 222222 34555667788877777666532210 011222233 344
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHH---------------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhh-
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVS---------------FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVT- 297 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~- 297 (491)
..+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++...
T Consensus 81 ~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 81 IAVINQNVNLVR----ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE----IVRLLIEHGADIRAQDS 152 (232)
T ss_dssp HHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHH----HHHHHHHTTCCTTCCCT
T ss_pred HHHHcCCHHHHH----HHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCC
Confidence 455667765444 4444555444321 112333344456654 4444555665544321
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011201 298 -CEILVDGLCNEGRVLKACELVIDFSRRGVLP 328 (491)
Q Consensus 298 -~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (491)
-.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 2244556678899988888888888877543
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.45 E-value=78 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
.|.++++.+.+.+...+..|..--+..+...
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 4444444444443333333333333333333
No 329
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.43 E-value=2.7e+02 Score=26.00 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=29.4
Q ss_pred HHHHHHH---cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 265 TLIRGFF---GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 265 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
.+++++. +.++.+.|+.++.+|.+.|..|....-..++.++-..|
T Consensus 257 d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 257 DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 3444443 46789999999999999887765544444444444333
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.22 E-value=1.7e+02 Score=23.67 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=17.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
-.|.+.|+-.+-+|.+.|-.|....-..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355666666666666665554444444444433
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.85 E-value=1.6e+02 Score=23.04 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=30.5
Q ss_pred CCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLP--SVIACTTLIE-G-----LRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 393 (491)
.|++-+|-++++........+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666667776666654444 4445555555 1 2345777777777776655
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.00 E-value=2.1e+02 Score=30.05 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHcCC
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD----FDYFGLVEKLCGEG 344 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 344 (491)
.-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46778888888899999888888877754222222 35666666666544
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.81 E-value=1.7e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhcCCCCCH-H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 171 NDGLLAFEAMRKLIDGRPSV-S-----IYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~-~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
+-|+.+|+.+.+......+. . .--..+..|.+.|.+++|.+++++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 45777777776643111111 0 1113344566777777777777776553
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.77 E-value=88 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444433444444443
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.75 E-value=1.9e+02 Score=23.70 Aligned_cols=20 Identities=10% Similarity=0.028 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 011201 309 GRVLKACELVIDFSRRGVLP 328 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~ 328 (491)
.+.+.|+.++..|++.|..|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44445555555554444443
No 336
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=33.94 E-value=51 Score=27.70 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=11.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC
Q 011201 198 NGFVKCREFDKALGFYDRMVRDRV 221 (491)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~m~~~~~ 221 (491)
...++.|+.+.+..+++.+.+.|.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 334444555555555554444443
No 337
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.01 E-value=4.4e+02 Score=27.41 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 299 EILVDGLCNEGRV---LKACELVIDFSRRG----VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTL 371 (491)
Q Consensus 299 ~~ll~~~~~~g~~---~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (491)
..++...|..|.. +.|.+.|+.....+ +.||. -..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4567777888764 56777887776542 44443 2333333445677776667777776653 44555678
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEG-ILPDSVTFNCLLEDLCD-VGRTVDADRLRLLAST---KGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~---~g~~p~~~~~~~li~~~~ 446 (491)
+.+++...+.+...++++.....+ +++.. ... ++.+... ....+.|.+++..=-+ ..+..+...+..+|....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888887888877777777665432 33322 222 2233232 2223444444432111 112233445677777776
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011201 447 RENRRKEGENLVNEMLD 463 (491)
Q Consensus 447 ~~g~~~~A~~~~~~m~~ 463 (491)
..-..++-++-+++..+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 65555555555555543
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.92 E-value=3.2e+02 Score=25.74 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 185 DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 185 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
|.+--...|..-.+.+...|++++|-++-..-.+ |+-.+..|.+.+-..-...|+..--+..|.-+.+.|
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 4333444455555566666666666666554432 333344444443333333344444555555555443
No 339
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.84 E-value=2e+02 Score=23.51 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 011201 274 RKFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~ 293 (491)
.+.+.|+-++-+|++.|-.|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555554443
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.72 E-value=1.1e+02 Score=20.27 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 278 EGVNMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 278 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
.+.++++.+.+.+...+..|..-.+..+.
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 33444444444433333333333333333
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.68 E-value=87 Score=25.58 Aligned_cols=18 Identities=6% Similarity=-0.105 Sum_probs=8.3
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 011201 198 NGFVKCREFDKALGFYDR 215 (491)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~ 215 (491)
...++.|+.+....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334444555555444443
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.62 E-value=1.2e+02 Score=23.57 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=29.8
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCC
Q 011201 252 REKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 252 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 310 (491)
.+.|++.+. .-..++..+.+.+..-.|.++++.+.+. +...+..|.---++.+.+.|-
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344555433 3344455555555555666666666655 444444444444445555443
No 343
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.93 E-value=52 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 011201 197 INGFVKCREFDKALGFYDR 215 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~ 215 (491)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666655555554
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.88 E-value=99 Score=23.53 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
.-.|.++++.+.+.+...+..|...-+..+.+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 44455555555554444444443333333333
No 345
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=30.95 E-value=2.4e+02 Score=24.59 Aligned_cols=121 Identities=4% Similarity=0.037 Sum_probs=51.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVT--FNILISGFC 236 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~ 236 (491)
..+...++.|+.+....++........ ..|.. -.+.+...+..|+.+-+..++ +.|..++... -.+.+...+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~d~~-g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCH-ASDGR-KSTPLHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCC-CSSTT-CCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCC-CCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcHHHHHH
Confidence 345555667777766666543211100 11221 223445555667655444333 3444433221 112333445
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVV---SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFS 294 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 294 (491)
..|+.+- ++.+.+.|..++.. -++ .+...+..|+.+ +++.+.+.|..++
T Consensus 100 ~~g~~~i----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~ 151 (351)
T 3utm_A 100 SYGHYEV----TELLLKHGACVNAMDLWQFT-PLHEAASKNRVE----VCSLLLSHGADPT 151 (351)
T ss_dssp HTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HCCCHHH----HHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 5566543 33444455544322 122 233333455544 3344444555443
No 346
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.47 E-value=2.2e+02 Score=22.76 Aligned_cols=111 Identities=8% Similarity=-0.083 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
++...-...+..+.+.+..+ +...+..+... +|...-...+.++.+.++.+ +...+.++.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 55666566666666666533 33333333332 35555555566666666533 3333333332 23555555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.|+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 5555555532 2233333322 2344444445555555544
No 347
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.23 E-value=5e+02 Score=26.94 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 193 YNVLINGFVKCRE---FDKALGFYDRMVRDR----VKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 193 ~~~li~~~~~~~~---~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
...++...|..|. .++|.+.|+.....+ +.||.. ..+...-.+.|.-++-..+++...... +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 3445666677665 456777777765432 445543 223333345566666666666665541 3344456
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
++.+++...+.....++++....
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCHHHHHHHHHHHhC
Confidence 67777777777666666666554
No 348
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=28.90 E-value=3.2e+02 Score=24.49 Aligned_cols=238 Identities=9% Similarity=0.027 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHH
Q 011201 206 FDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--KFDLALGLFREMREKGCNPN-----VVSFNTLIRGFFGERKFDE 278 (491)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~ 278 (491)
-+.|..+.+.|.. ...|..+ +|..++... +.....+.|+.+..+.+.-+ .-.|..++.++...--..+
T Consensus 45 ~~Da~~L~kA~kg--~GtDE~~---iI~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG~fe~~l~~l~~~p~~~D 119 (346)
T 1hm6_A 45 SSDVEALHKAITV--KGVDEAT---IIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFD 119 (346)
T ss_dssp HHHHHHHHHHHSS--TTCCHHH---HHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhccC--CCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCccHHHHHHHHhCCcHHHH
Confidence 3677788887754 3456544 445554443 33445555666654422111 1134445555554444456
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHcCCCH-----
Q 011201 279 GVNMAYEMIELGCEFSSVTCEILVDGLCNEG--RVLKACELVIDFSRRGVLPK-----DFDYFGLVEKLCGEGNA----- 346 (491)
Q Consensus 279 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~----- 346 (491)
|..+.+.|...| .|. ..++..++... +.....+.|..+-...+.-+ ...|..++-+++...+.
T Consensus 120 A~~L~~AmkG~G--Tde---~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~~~R~e~~~v 194 (346)
T 1hm6_A 120 ADELRAAMKGLG--TDE---DTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAI 194 (346)
T ss_dssp HHHHHHHHSSSC--CCH---HHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHTTCCCCCCSC
T ss_pred HHHHHHHhhccC--CCH---HHHHHHHhcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhhccccccCCC
Confidence 666666665444 343 34555555443 34444455554433322111 12355556566654321
Q ss_pred ------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC----C--CH---HHHHHHHH
Q 011201 347 ------GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE---GIL----P--DS---VTFNCLLE 408 (491)
Q Consensus 347 ------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~----p--~~---~~~~~ll~ 408 (491)
.+|..+++.+.. +.-.|..++..++ +. ....+-..+++...+. .+. - +. ..+..++.
T Consensus 195 d~~~a~~DA~~L~~A~~~-~~Gtde~~li~IL---~t-RS~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~L~~lv~ 269 (346)
T 1hm6_A 195 NDDLADTDARALYEAGER-RKGTDLNVFITIL---TT-RSYPHLRRVFQKYSKYSKHDMNKVLDLELKGDIENCLTVVVK 269 (346)
T ss_dssp CHHHHHHHHHHHHHHTTT-SSSCCHHHHHHHH---HH-SCHHHHHHHHHHHHTTCCCCTTSBCCCCCBHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhc-cCCCcHHHHHHHH---hc-CCHHHHHHHHHHHHHHHCcCHHHHHHHHcCchHHHHHHHHHh
Confidence 244555544422 1223554444433 32 2233444444433332 111 1 11 22233333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+.. ......|..+++.|... ..|..++..++.. ...-+.....+.|+++-
T Consensus 270 ~~r-~~~~~~A~~L~~A~~g~--GTde~~lirIlvs-Rs~~dL~~I~~~Y~~~y 319 (346)
T 1hm6_A 270 CAT-SKPMFFAEKLHQAMKGI--GTRHKTLIRIMVS-RSEIDMNDIKACYQKLY 319 (346)
T ss_dssp HHH-CHHHHHHHHHHHHHSSS--SCCHHHHHHHHHH-TTTTTHHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHhcCC--CCCHHHHhHHHhh-CCHHHHHHHHHHHHHHh
Confidence 222 11122466666666543 3455544433322 12345666666677665
No 349
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.78 E-value=80 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=8.4
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 011201 236 CRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g 255 (491)
++.|+.+.+..+++.+.+.|
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 33444444444444444333
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.01 E-value=1.3e+02 Score=26.82 Aligned_cols=14 Identities=7% Similarity=-0.042 Sum_probs=7.2
Q ss_pred HhcCChHHHHHHHH
Q 011201 411 CDVGRTVDADRLRL 424 (491)
Q Consensus 411 ~~~g~~~~a~~~~~ 424 (491)
+..|..+-+..+++
T Consensus 252 ~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 252 VRAAMVLLTKELLQ 265 (364)
T ss_dssp HHTCCHHHHHHHHH
T ss_pred HHhChHHHHHHHHH
Confidence 44566555554444
No 351
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.89 E-value=1.2e+02 Score=23.01 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHH
Q 011201 201 VKCREFDKALGFY 213 (491)
Q Consensus 201 ~~~~~~~~A~~~~ 213 (491)
++.|+.+.+..++
T Consensus 16 ~~~g~~~~v~~ll 28 (165)
T 3twr_A 16 AKAGDVETVKKLC 28 (165)
T ss_dssp HHHTCHHHHHHHC
T ss_pred HHhCCHHHHHHHH
Confidence 3444444444433
No 352
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.36 E-value=46 Score=28.41 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=10.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 011201 200 FVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~ 220 (491)
.++.|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 344555555555555444433
No 353
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.32 E-value=1.6e+02 Score=20.51 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhCC
Q 011201 311 VLKACELVIDFSRRG 325 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~ 325 (491)
.++|.++++.+.++|
T Consensus 53 ~~~ar~Lld~L~~rG 67 (97)
T 3ygs_P 53 RDQARQLIIDLETRG 67 (97)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444444433
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.84 E-value=88 Score=23.26 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 34444455555667777777776665666667666677777666554
No 355
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.52 E-value=1.2e+02 Score=27.11 Aligned_cols=147 Identities=13% Similarity=0.005 Sum_probs=73.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRP---SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
..+...+..|+.+-...+++. |..+ |..-+ +.+...+..|+.+-+..+++. |..++...-.+.+...
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIET-----GVSPTIQNRFGC-TALHLACKFGCVDTAKYLASV----GEVHSLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTCC-CHHHHHHHHCCHHHHHHHHHH----CCCCCCBTTBCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHc-----CCCccccCCCCC-cHHHHHHHcCCHHHHHHHHHC----CCCccccCCCCHHHHH
Confidence 345555667777666555543 2222 22222 344555667777655555443 3333432223345556
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH--------------------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCC
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNV--------------------VSFNTLIRGFFGER--KFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~ 293 (491)
+..|+.+-+..+++.....|..++. .-++.| ...+..| +.+ +++.+.+.|..+
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~----~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLE----MIKILVQLGASP 166 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHH----HHHHHHHHTCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHH----HHHHHHHcCCCC
Confidence 6778888887777775554544332 112233 3334455 443 334444445544
Q ss_pred Chhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 011201 294 SSVT--CEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 294 ~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+... -...+...+..|+.+-+..+++.
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3321 12334445567777666555543
No 356
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.43 E-value=2.4e+02 Score=23.21 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HH-----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 381 GVEASGLMEKMLKEGILPDSV--TF-----NCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 381 ~~~a~~~~~~m~~~~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.+.|+.+|+.+.+....++.. .- ...+..|.+.|.+++|.++++.....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777766653111111 11 12223466667777777776666553
No 357
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.41 E-value=1.2e+02 Score=22.48 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444444555555555555544444444444444444444
No 358
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.40 E-value=52 Score=20.60 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC
Q 011201 203 CREFDKALGFYDRMVRDRVKPD 224 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~~~~~p~ 224 (491)
.|+++.|...+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4566666666666655544443
No 359
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.34 E-value=45 Score=28.46 Aligned_cols=57 Identities=7% Similarity=-0.023 Sum_probs=29.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHH--hcCCHHHHHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRP------SVSIYNVLINGFV--KCREFDKALGFYDR 215 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~--~~~~~~~A~~~~~~ 215 (491)
..+...++.|+.+....+++.......... +..-++.|..+.. +.|+.+-+..+++.
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 345556677888887777776655421111 2233344444433 23555555555544
No 360
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.05 E-value=78 Score=23.91 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44455555555667777777776666667777777777777776554
No 361
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.57 E-value=2.5e+02 Score=22.15 Aligned_cols=118 Identities=6% Similarity=-0.141 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
-...+.++.+.|.. ++...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.
T Consensus 62 r~~a~~~L~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 62 RRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 33445555555543 23333333332 256666666666666666643 3333333332 235555555556665
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
+.++.+ +...+.++... ++...-...+.++.+.|.. ++...+..+.+
T Consensus 133 ~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 133 EIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 555532 33333333332 3555555555555555542 34444444443
No 362
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.19 E-value=2.6e+02 Score=22.25 Aligned_cols=118 Identities=6% Similarity=-0.117 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.++.+ +...+..+.+ .++...-...+.++.
T Consensus 67 r~~a~~aL~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 67 RRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALG 137 (211)
T ss_dssp HHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 33445555555543 23333333332 255556566666666666533 3333333333 235555555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
+.|+.+ +...+.++.+ .++...-...+.++.+.+. .++...+..+.+
T Consensus 138 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 138 EIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 555432 3333333332 2344444555555555544 334444444433
No 363
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.19 E-value=1e+02 Score=25.19 Aligned_cols=17 Identities=0% Similarity=-0.081 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHH
Q 011201 196 LINGFVKCREFDKALGF 212 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~ 212 (491)
.+...+..|+.+-+..+
T Consensus 47 ~L~~A~~~~~~~~v~~L 63 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYL 63 (237)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 34444556665544333
No 364
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.07 E-value=1.1e+02 Score=23.11 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444445555555555444444444444444444333
No 365
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.28 E-value=1.4e+02 Score=19.18 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKC 203 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 203 (491)
..++.++..+++..-+++++..+++..+.+ .-+...|---++.+++.
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g--~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRG--TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 346667777777777788888888877764 45666665555555543
No 366
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.03 E-value=80 Score=19.77 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 277 DEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 277 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
++|.+.|.+|++..-.....+|...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444554444332222334444444444
No 367
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.85 E-value=1.1e+02 Score=22.42 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=6.1
Q ss_pred cCCCHHHHHHHHHHH
Q 011201 272 GERKFDEGVNMAYEM 286 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m 286 (491)
..++++.|.++...+
T Consensus 73 ~~~dy~~A~~ih~~l 87 (118)
T 2yru_A 73 LHHQWDAADDIHRSL 87 (118)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 334444444444333
No 368
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.49 E-value=1.3e+02 Score=22.81 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=7.5
Q ss_pred HHhcCChhHHHHHHH
Q 011201 235 FCRNKKFDLALGLFR 249 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~ 249 (491)
.++.|+.+.+..+++
T Consensus 15 A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 15 AAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHH
Confidence 445556555544443
No 369
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.45 E-value=1.9e+02 Score=20.08 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHc
Q 011201 241 FDLALGLFREMREK 254 (491)
Q Consensus 241 ~~~A~~~~~~m~~~ 254 (491)
.+.|.++++.+..+
T Consensus 53 ~~~ar~Lld~L~~r 66 (97)
T 3ygs_P 53 RDQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444443
No 370
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.25 E-value=1.9e+02 Score=23.40 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHh
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNILISGFCR 237 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~ 237 (491)
+...++.|+++....+++.-..... ..+..-+ +.+...+..|+.+-+..+ .+.|..++. ..++. +...+.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~-t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~ 82 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLAT-RTDQDSR-TALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSP-LHIAAS 82 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSC-CHHHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCH-HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCC-CHHHHHHHcCcHHHHHHH----HHhCCCCCCcCCCCCCH-HHHHHH
Confidence 5556778888888877765433211 1222222 334455666776554444 444544433 22233 334455
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 011201 238 NKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p 258 (491)
.|+.+- ++.+.+.|..+
T Consensus 83 ~~~~~~----v~~Ll~~g~~~ 99 (231)
T 3aji_A 83 AGXDEI----VKALLVKGAHV 99 (231)
T ss_dssp HTCHHH----HHHHHHTTCCT
T ss_pred cCHHHH----HHHHHHcCCCC
Confidence 566543 34444455443
No 371
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.48 E-value=79 Score=27.21 Aligned_cols=16 Identities=6% Similarity=-0.369 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHH
Q 011201 196 LINGFVKCREFDKALG 211 (491)
Q Consensus 196 li~~~~~~~~~~~A~~ 211 (491)
.+...+..|+.++..+
T Consensus 18 ~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 18 GSHMASMDGKQGGMDG 33 (285)
T ss_dssp ----------------
T ss_pred HHHHHhhcCCCCCccc
Confidence 3344444444444443
No 372
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.37 E-value=2.1e+02 Score=20.11 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=12.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 384 ASGLMEKMLKEGILPDSVTFNCLLEDLC 411 (491)
Q Consensus 384 a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 411 (491)
|.++.+++..-|+.|+..+...++..|.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~ 55 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCV 55 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444444444455555444444444433
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.00 E-value=6.9e+02 Score=26.06 Aligned_cols=131 Identities=7% Similarity=0.020 Sum_probs=64.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
++..|...+..+-+.++..... .+...-..+..+|...|++++|...|++.-. |...+....+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~---------------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~ 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN---------------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA 878 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC---------------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCG
T ss_pred HHHHHHHhcHHHHHHHHHhhcC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCccccc
Confidence 5566666777766555443221 1122223567778888888888888877643 2211100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRGF 270 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~ 270 (491)
. .+....++.... . ......-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.
T Consensus 879 ~----------~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a 946 (950)
T 4gq2_M 879 V----------LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTA 946 (950)
T ss_dssp G----------GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHH
T ss_pred c----------hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 0 000111111110 0 0011224666777777777777777777766653211122 3566666666
Q ss_pred HcCC
Q 011201 271 FGER 274 (491)
Q Consensus 271 ~~~g 274 (491)
+..|
T Consensus 947 ~a~g 950 (950)
T 4gq2_M 947 CAAG 950 (950)
T ss_dssp HHHC
T ss_pred hhCC
Confidence 5443
No 374
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.45 E-value=5.4e+02 Score=24.62 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011201 399 DSVTFNCLLEDLCDVGRTVDADRL----RLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 399 ~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
|......+-+.+...|..++-.++ +....+..-+-+.....-|-.-|.+.|++-+|.+++..+-..+...+
T Consensus 177 DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 177 DRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred hHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 444445555666666666655442 22222222223455566666777888888888888888876655444
No 375
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.03 E-value=2.1e+02 Score=19.58 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=16.8
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
...++|.++++.+..+| ...|..++.++.+.+.
T Consensus 50 t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCH
Confidence 44555555555554443 4455555555554443
No 376
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=20.83 E-value=4.3e+02 Score=23.19 Aligned_cols=156 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC--HhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGN--AGIALEVVDELWKKGNLPSVI-----ACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~a 384 (491)
..|..+.+.|...|.. -..+|..++.... .....+.|+.+....+.-+.. .|..++.+++..-...+|
T Consensus 16 ~DA~~L~~A~kG~Gtd-----e~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA 90 (315)
T 1dm5_A 16 EDAETLRKAMKGIGTD-----EKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLA 90 (315)
T ss_dssp HHHHHHHHHHSSSSCC-----HHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHH
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHhcCCH--------
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMT-----YHILVSGYTRENRR-------- 451 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~-----~~~li~~~~~~g~~-------- 451 (491)
..+.+.| .|...|..++..++.. ....++....+.|+......+.-++.. |..++.++.+..+.
T Consensus 91 ~~L~~A~--kg~Gtde~~lieIL~t-Rs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~~~vd~~ 167 (315)
T 1dm5_A 91 EQLHAAM--KGLGTDKNALIDILCT-QSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAA 167 (315)
T ss_dssp HHHHHHH--HSSSCCHHHHHHHHSS-CCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCTTCCCCHH
T ss_pred HHHHHHh--hcCCCchhhhhhhHhc-CCHHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHccccCCCCCCCHH
Q ss_pred ---HHHHHHHHHHHHCC-CCCCHHHHHHHH
Q 011201 452 ---KEGENLVNEMLDEG-FIPDLATYNSYM 477 (491)
Q Consensus 452 ---~~A~~~~~~m~~~~-~~p~~~~~~~ll 477 (491)
..|..+++.|. | .-.|..++..++
T Consensus 168 ~a~~dA~~L~~A~~--~~~GTde~~lirIl 195 (315)
T 1dm5_A 168 HAAEDAAAIYQAGE--GQIGTDESRFNAVL 195 (315)
T ss_dssp HHHHHHHHHHHHTT--TSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcCCCcHHHHHHHH
No 377
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=20.79 E-value=4.4e+02 Score=23.26 Aligned_cols=238 Identities=11% Similarity=0.033 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHHH
Q 011201 207 DKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--KFDLALGLFREMREKGCNPN-----VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a 279 (491)
..|..+.+.|...| .|.. .+|..++... +.....+.|+.+..+.+.-+ ...|..++.++...--..+|
T Consensus 22 ~Da~~L~kA~kG~G--tde~---~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~p~~~DA 96 (323)
T 1axn_A 22 VDAEAIQKAIRGIG--TDEK---MLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDA 96 (323)
T ss_dssp HHHHHHHHHHSSSS--CCHH---HHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCHH---HHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCccHHHHHHHHhcCchHHHH
Confidence 66777777775444 4554 4455555443 33455566666654422111 11344445554443333456
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHcCCC-------
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEG--RVLKACELVIDFSRRGVLPK-----DFDYFGLVEKLCGEGN------- 345 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~------- 345 (491)
..+.+.|...| .|. ..++..++... +.....+.|+.+-...+.-+ ...+..++-+++...+
T Consensus 97 ~~L~~A~kG~G--tde---~~lieIL~~Rs~~q~~~I~~aY~~~y~~~Le~di~se~sG~~~~ll~~l~~~~R~e~~~vd 171 (323)
T 1axn_A 97 KQLKKSMKGAG--TNE---DALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVD 171 (323)
T ss_dssp HHHHHHHCSSS--CCH---HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCSCCCSCCC
T ss_pred HHHHHHhccCC--CCH---HHHhHHhcCCCHHHHHHHHHHHHHhhCcCHHHHHHHhcCcHHHHHHHHHHhcccccCCCCC
Confidence 66666664433 344 44555555443 34455555655544433211 1234555555555432
Q ss_pred ----HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHH
Q 011201 346 ----AGIALEVVDELWKKGNLPSVIACTTLIEGLRRL--RKGVEASGLMEKMLKEGILPD---------SVTFNCLLEDL 410 (491)
Q Consensus 346 ----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~---------~~~~~~ll~~~ 410 (491)
-..|..+++.+.. +.-.|..++..++ +.. .+.....+.|+++-...+.-+ ...+..++.+.
T Consensus 172 ~~~a~~DA~~L~~A~~~-~~Gtde~~li~Il---~tRs~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~Ll~lv~~~ 247 (323)
T 1axn_A 172 EHLAKQDAQILYKAGEN-RWGTDEDKFTEIL---CLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCV 247 (323)
T ss_dssp HHHHHHHHHHHHHHTTT-SSSCCHHHHHHHH---HHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcc-CCCCCHHHHHHHH---HhCCHHHHHHHHHHHHHHHCcCHHHHHhHhcCchHHHHHHHHHHhc
Confidence 1244555554422 1223554444333 332 122334444444433222111 01122233322
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 411 CDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
... ....|..+++.|. |...|..++..++.. ....++....+.|+++-
T Consensus 248 r~~-~~~~A~~L~~A~~--g~GTde~~lirilv~-Rs~~~L~~i~~~Y~~~y 295 (323)
T 1axn_A 248 RNT-PAFLAERLHRALK--GIGTDEFTLNRIMVS-RSEIDLLDIRTEFKKHY 295 (323)
T ss_dssp HHH-HHHHHHHHHHHHS--SSSCCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHhcc--cCCCCHHHhhhhhhh-CCHHHHHHHHHHHHHHc
Confidence 211 1223556666664 334565555544432 23356666667777665
No 378
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.74 E-value=3.2e+02 Score=26.43 Aligned_cols=87 Identities=5% Similarity=-0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 228 FNILISGFC--RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 228 ~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
|..-|..+. ...+.........++..+-.--+..-...++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHH
Q ss_pred HhcCCHHHHHH
Q 011201 306 CNEGRVLKACE 316 (491)
Q Consensus 306 ~~~g~~~~a~~ 316 (491)
.+.|+++.+..
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 379
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.55 E-value=3.6e+02 Score=22.18 Aligned_cols=14 Identities=0% Similarity=0.133 Sum_probs=6.4
Q ss_pred HHHHHHHHHhCCCC
Q 011201 314 ACELVIDFSRRGVL 327 (491)
Q Consensus 314 a~~~~~~~~~~~~~ 327 (491)
+..+++.+.+.|..
T Consensus 95 i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 95 VEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 33444444444444
No 380
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.01 E-value=93 Score=25.26 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHHH
Q 011201 200 FVKCREFDKALGFYD 214 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~ 214 (491)
.++.|+.+.+..+++
T Consensus 9 A~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 9 ACMENEFFKVQELLH 23 (228)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHh
Confidence 344455444444443
Done!