Query 011202
Match_columns 491
No_of_seqs 170 out of 2018
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 22:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 5.8E-57 1.3E-61 450.7 46.8 434 29-462 1-434 (435)
2 PLN02529 lysine-specific histo 100.0 9.1E-47 2E-51 385.1 43.4 425 26-464 158-600 (738)
3 PLN03000 amine oxidase 100.0 1.2E-46 2.5E-51 384.6 44.0 426 27-466 183-627 (881)
4 PLN02328 lysine-specific histo 100.0 1.1E-45 2.5E-50 378.2 42.4 429 26-468 236-685 (808)
5 PLN02676 polyamine oxidase 100.0 6.8E-45 1.5E-49 363.4 45.1 422 25-463 23-474 (487)
6 KOG0029 Amine oxidase [Seconda 100.0 7.8E-46 1.7E-50 365.0 36.3 434 25-464 12-461 (501)
7 PLN02976 amine oxidase 100.0 1.9E-44 4.2E-49 376.4 44.8 428 27-464 692-1188(1713)
8 PLN02568 polyamine oxidase 100.0 6.6E-44 1.4E-48 358.3 43.7 432 26-461 3-534 (539)
9 COG1231 Monoamine oxidase [Ami 100.0 4.4E-41 9.5E-46 314.2 29.8 411 26-462 5-447 (450)
10 KOG0685 Flavin-containing amin 100.0 1.8E-40 3.9E-45 309.3 33.5 424 27-461 20-490 (498)
11 TIGR00562 proto_IX_ox protopor 100.0 5.3E-38 1.2E-42 317.0 33.1 401 28-462 2-460 (462)
12 PRK12416 protoporphyrinogen ox 100.0 1.9E-37 4.1E-42 312.4 33.8 405 28-462 1-461 (463)
13 PRK11883 protoporphyrinogen ox 100.0 1.6E-36 3.6E-41 305.7 33.3 402 29-460 1-450 (451)
14 PRK07233 hypothetical protein; 100.0 9.3E-37 2E-41 306.2 28.6 401 30-463 1-432 (434)
15 PLN02576 protoporphyrinogen ox 100.0 2.5E-36 5.4E-41 307.1 31.2 401 26-463 10-488 (496)
16 TIGR02731 phytoene_desat phyto 100.0 4.1E-35 8.9E-40 294.6 36.2 405 30-459 1-453 (453)
17 PF01593 Amino_oxidase: Flavin 100.0 1.4E-36 3E-41 306.0 25.4 407 38-459 1-450 (450)
18 COG1232 HemY Protoporphyrinoge 100.0 2.2E-35 4.7E-40 283.8 30.6 398 29-459 1-443 (444)
19 PLN02612 phytoene desaturase 100.0 1E-34 2.2E-39 295.7 36.5 414 26-462 91-548 (567)
20 PRK07208 hypothetical protein; 100.0 1.2E-33 2.7E-38 286.1 32.7 401 25-461 1-460 (479)
21 TIGR02732 zeta_caro_desat caro 100.0 9.3E-33 2E-37 276.2 31.1 405 30-459 1-474 (474)
22 PLN02487 zeta-carotene desatur 100.0 1.8E-32 3.9E-37 275.4 32.8 421 27-470 74-561 (569)
23 TIGR03467 HpnE squalene-associ 100.0 2.2E-32 4.7E-37 273.3 33.3 388 42-459 1-418 (419)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 7.1E-32 1.5E-36 273.6 35.6 421 29-460 2-490 (492)
25 TIGR02730 carot_isom carotene 100.0 8.1E-31 1.8E-35 265.3 34.5 427 29-461 1-491 (493)
26 TIGR02734 crtI_fam phytoene de 100.0 7.6E-32 1.7E-36 274.3 24.8 421 31-461 1-491 (502)
27 COG3380 Predicted NAD/FAD-depe 100.0 7.9E-30 1.7E-34 220.4 18.2 322 29-461 2-330 (331)
28 COG1233 Phytoene dehydrogenase 100.0 3.2E-27 7E-32 236.9 21.8 247 27-280 2-281 (487)
29 COG2907 Predicted NAD/FAD-bind 99.9 8E-25 1.7E-29 195.8 22.2 277 27-321 7-309 (447)
30 KOG1276 Protoporphyrinogen oxi 99.9 9.1E-24 2E-28 194.5 27.5 407 25-459 8-490 (491)
31 KOG4254 Phytoene desaturase [C 99.9 1.5E-23 3.3E-28 193.8 22.1 240 216-461 251-545 (561)
32 COG3349 Uncharacterized conser 99.9 5.4E-23 1.2E-27 197.1 19.5 414 29-467 1-468 (485)
33 TIGR00031 UDP-GALP_mutase UDP- 99.8 1.8E-17 4E-22 158.7 24.2 232 28-281 1-248 (377)
34 PTZ00363 rab-GDP dissociation 99.7 1.5E-16 3.2E-21 156.3 19.3 232 25-277 1-287 (443)
35 PRK13977 myosin-cross-reactive 99.7 2.5E-15 5.4E-20 148.8 23.2 74 25-101 19-98 (576)
36 PF13450 NAD_binding_8: NAD(P) 99.7 2.9E-17 6.3E-22 116.9 6.2 68 33-100 1-68 (68)
37 COG2081 Predicted flavoprotein 99.7 1.3E-15 2.9E-20 141.3 16.2 59 219-277 100-164 (408)
38 COG1635 THI4 Ribulose 1,5-bisp 99.5 4.5E-13 9.8E-18 113.5 13.0 68 27-104 29-96 (262)
39 PRK08773 2-octaprenyl-3-methyl 99.5 1.2E-11 2.6E-16 122.3 24.5 50 231-280 119-169 (392)
40 COG0562 Glf UDP-galactopyranos 99.5 3.1E-13 6.8E-18 121.0 11.3 221 28-281 1-242 (374)
41 PRK10157 putative oxidoreducta 99.5 2E-12 4.3E-17 128.6 18.4 40 27-66 4-43 (428)
42 PF01266 DAO: FAD dependent ox 99.5 4.1E-13 9E-18 131.2 13.0 43 237-280 160-203 (358)
43 TIGR01988 Ubi-OHases Ubiquinon 99.5 1.5E-11 3.3E-16 121.5 23.9 50 231-280 112-163 (385)
44 PRK07364 2-octaprenyl-6-methox 99.5 2.4E-11 5.2E-16 121.2 25.0 42 22-63 12-53 (415)
45 PRK09126 hypothetical protein; 99.5 1.3E-11 2.8E-16 122.2 22.5 51 231-281 116-168 (392)
46 PRK05714 2-octaprenyl-3-methyl 99.4 3.9E-11 8.5E-16 119.2 24.9 52 231-282 118-170 (405)
47 PRK12409 D-amino acid dehydrog 99.4 2.8E-11 6.1E-16 120.4 23.8 39 29-67 2-40 (410)
48 COG0644 FixC Dehydrogenases (f 99.4 4.8E-11 1E-15 117.7 24.8 43 27-69 2-44 (396)
49 PRK10015 oxidoreductase; Provi 99.4 2.2E-11 4.7E-16 121.0 20.9 39 27-65 4-42 (429)
50 PRK11259 solA N-methyltryptoph 99.4 5.5E-11 1.2E-15 117.0 23.6 43 237-280 162-204 (376)
51 COG0654 UbiH 2-polyprenyl-6-me 99.4 1.1E-10 2.5E-15 114.8 25.2 53 231-283 110-165 (387)
52 TIGR01984 UbiH 2-polyprenyl-6- 99.4 8.3E-11 1.8E-15 116.0 23.6 51 230-280 110-162 (382)
53 PRK07608 ubiquinone biosynthes 99.4 2E-10 4.4E-15 113.5 26.0 49 231-280 117-167 (388)
54 PF03486 HI0933_like: HI0933-l 99.4 2.8E-12 6.2E-17 124.8 12.5 40 29-68 1-40 (409)
55 TIGR01377 soxA_mon sarcosine o 99.4 1.3E-10 2.8E-15 114.6 24.2 49 230-279 150-199 (380)
56 PRK07494 2-octaprenyl-6-methox 99.4 1.2E-10 2.7E-15 115.0 24.0 51 230-280 116-167 (388)
57 PRK08850 2-octaprenyl-6-methox 99.4 6.8E-11 1.5E-15 117.3 22.2 51 231-281 117-169 (405)
58 PRK07333 2-octaprenyl-6-methox 99.4 3E-10 6.5E-15 112.9 26.6 50 231-280 117-167 (403)
59 PRK08013 oxidoreductase; Provi 99.4 1.4E-10 3E-15 114.8 24.0 52 231-282 117-170 (400)
60 PF01946 Thi4: Thi4 family; PD 99.4 2.1E-12 4.6E-17 110.4 9.0 68 27-104 16-83 (230)
61 PRK08020 ubiF 2-octaprenyl-3-m 99.4 2.1E-10 4.6E-15 113.5 24.1 52 230-281 117-170 (391)
62 TIGR02032 GG-red-SF geranylger 99.3 1.2E-10 2.7E-15 110.4 20.7 37 29-65 1-37 (295)
63 PRK05732 2-octaprenyl-6-methox 99.3 2.8E-10 6E-15 112.8 23.9 50 231-280 118-169 (395)
64 TIGR01373 soxB sarcosine oxida 99.3 2.5E-10 5.5E-15 113.5 22.6 39 26-65 28-68 (407)
65 PRK06847 hypothetical protein; 99.3 4.5E-10 9.8E-15 110.5 24.1 43 238-280 121-163 (375)
66 COG0579 Predicted dehydrogenas 99.3 2.3E-11 5E-16 117.2 14.1 43 27-69 2-46 (429)
67 PRK06184 hypothetical protein; 99.3 5.9E-10 1.3E-14 113.7 25.0 52 231-282 115-170 (502)
68 PRK08849 2-octaprenyl-3-methyl 99.3 5.8E-10 1.3E-14 109.8 23.8 52 231-282 116-169 (384)
69 PRK07588 hypothetical protein; 99.3 6.1E-10 1.3E-14 110.1 23.8 52 232-283 110-161 (391)
70 PRK11445 putative oxidoreducta 99.3 1.7E-09 3.6E-14 105.1 26.0 48 233-280 107-157 (351)
71 PRK06834 hypothetical protein; 99.3 1.4E-09 3.1E-14 109.7 26.0 49 233-281 108-157 (488)
72 PRK08244 hypothetical protein; 99.3 5.2E-10 1.1E-14 113.9 22.5 35 28-62 2-36 (493)
73 PRK07045 putative monooxygenas 99.3 6.3E-10 1.4E-14 109.9 22.5 51 231-281 112-166 (388)
74 TIGR00292 thiazole biosynthesi 99.3 1.1E-10 2.4E-15 106.7 15.7 42 27-68 20-61 (254)
75 PRK06753 hypothetical protein; 99.3 9.5E-10 2.1E-14 108.1 22.6 44 238-281 110-153 (373)
76 KOG2820 FAD-dependent oxidored 99.3 8.4E-10 1.8E-14 99.9 19.9 64 219-282 147-214 (399)
77 PRK06185 hypothetical protein; 99.3 1E-09 2.3E-14 109.1 23.1 37 26-62 4-40 (407)
78 COG0665 DadA Glycine/D-amino a 99.3 1.6E-09 3.5E-14 107.1 23.5 39 26-64 2-40 (387)
79 PRK04176 ribulose-1,5-biphosph 99.2 1.5E-10 3.2E-15 106.3 14.5 42 27-68 24-65 (257)
80 PRK05868 hypothetical protein; 99.2 3.1E-09 6.7E-14 104.0 24.6 48 235-282 115-162 (372)
81 PRK11728 hydroxyglutarate oxid 99.2 6.1E-11 1.3E-15 117.1 12.7 42 28-69 2-45 (393)
82 PRK06617 2-octaprenyl-6-methox 99.2 2.2E-09 4.8E-14 105.3 22.3 51 231-282 110-162 (374)
83 TIGR01989 COQ6 Ubiquinone bios 99.2 2.4E-09 5.3E-14 107.1 22.6 53 231-283 123-186 (437)
84 PRK07190 hypothetical protein; 99.2 4.2E-09 9.2E-14 106.2 24.3 45 238-282 123-167 (487)
85 PRK08132 FAD-dependent oxidore 99.2 6E-09 1.3E-13 107.5 25.3 38 26-63 21-58 (547)
86 PRK06996 hypothetical protein; 99.2 3.8E-09 8.3E-14 104.5 22.6 48 230-277 120-171 (398)
87 PRK00711 D-amino acid dehydrog 99.2 9.3E-11 2E-15 117.0 11.1 41 29-69 1-41 (416)
88 TIGR03329 Phn_aa_oxid putative 99.2 4.2E-10 9.1E-15 113.3 15.2 41 26-67 22-64 (460)
89 PRK08243 4-hydroxybenzoate 3-m 99.2 8.2E-09 1.8E-13 102.0 23.9 35 28-62 2-36 (392)
90 PLN02463 lycopene beta cyclase 99.2 5.2E-09 1.1E-13 103.8 21.8 43 237-280 127-169 (447)
91 PRK06183 mhpA 3-(3-hydroxyphen 99.2 5.1E-09 1.1E-13 107.7 22.6 39 26-64 8-46 (538)
92 PLN02172 flavin-containing mon 99.2 7.4E-10 1.6E-14 110.4 15.4 45 25-69 7-51 (461)
93 PTZ00383 malate:quinone oxidor 99.2 3.9E-10 8.5E-15 112.8 13.4 43 26-68 43-87 (497)
94 PRK06126 hypothetical protein; 99.2 8.1E-09 1.8E-13 106.6 23.4 37 26-62 5-41 (545)
95 PRK01747 mnmC bifunctional tRN 99.1 9.1E-10 2E-14 115.8 16.1 52 229-280 412-463 (662)
96 TIGR02023 BchP-ChlP geranylger 99.1 1.1E-08 2.3E-13 101.0 22.7 32 29-60 1-32 (388)
97 PLN00093 geranylgeranyl diphos 99.1 1.8E-08 3.9E-13 100.4 24.3 37 25-61 36-72 (450)
98 PF13738 Pyr_redox_3: Pyridine 99.1 2.6E-10 5.7E-15 101.8 10.1 41 238-278 96-136 (203)
99 COG0492 TrxB Thioredoxin reduc 99.1 2.4E-09 5.3E-14 100.0 16.3 42 422-464 261-302 (305)
100 PRK07236 hypothetical protein; 99.1 1.1E-09 2.5E-14 107.9 14.9 44 238-281 112-155 (386)
101 PRK12266 glpD glycerol-3-phosp 99.1 2.5E-08 5.4E-13 101.4 24.3 43 25-67 3-45 (508)
102 PF01494 FAD_binding_3: FAD bi 99.1 2.1E-10 4.5E-15 112.0 8.3 35 29-63 2-36 (356)
103 PF06100 Strep_67kDa_ant: Stre 99.1 2.8E-08 6.2E-13 96.1 22.0 72 28-102 2-79 (500)
104 PF05834 Lycopene_cycl: Lycope 99.1 1.1E-07 2.5E-12 92.9 26.9 50 231-280 93-142 (374)
105 TIGR01812 sdhA_frdA_Gneg succi 99.1 3.1E-08 6.6E-13 102.6 23.7 38 30-67 1-38 (566)
106 PRK08163 salicylate hydroxylas 99.1 1.4E-09 3.1E-14 107.7 13.3 51 231-281 115-167 (396)
107 PLN02697 lycopene epsilon cycl 99.1 1.7E-08 3.6E-13 101.8 20.7 35 26-60 106-140 (529)
108 PLN02661 Putative thiazole syn 99.1 2.4E-09 5.1E-14 100.6 13.3 42 27-68 91-133 (357)
109 PRK06452 sdhA succinate dehydr 99.1 7.5E-08 1.6E-12 99.1 25.2 41 27-67 4-44 (566)
110 TIGR01790 carotene-cycl lycope 99.0 4.3E-08 9.3E-13 96.9 21.7 36 30-65 1-36 (388)
111 TIGR02028 ChlP geranylgeranyl 99.0 5.2E-08 1.1E-12 96.1 22.1 36 29-64 1-36 (398)
112 PRK07538 hypothetical protein; 99.0 8.5E-08 1.8E-12 95.5 23.3 35 29-63 1-35 (413)
113 PRK13339 malate:quinone oxidor 99.0 4.7E-09 1E-13 104.7 13.9 44 26-69 4-49 (497)
114 TIGR01292 TRX_reduct thioredox 99.0 5.4E-09 1.2E-13 99.5 13.7 41 238-279 71-111 (300)
115 PRK05257 malate:quinone oxidor 99.0 8.3E-09 1.8E-13 103.8 15.3 44 26-69 3-48 (494)
116 PRK11101 glpA sn-glycerol-3-ph 99.0 4E-09 8.6E-14 108.1 13.2 39 27-65 5-43 (546)
117 TIGR01813 flavo_cyto_c flavocy 99.0 9.6E-09 2.1E-13 103.1 15.2 38 30-67 1-39 (439)
118 TIGR01320 mal_quin_oxido malat 99.0 7.1E-09 1.5E-13 104.2 13.8 41 29-69 1-43 (483)
119 PF00890 FAD_binding_2: FAD bi 99.0 8E-09 1.7E-13 103.1 13.8 36 30-65 1-36 (417)
120 TIGR03364 HpnW_proposed FAD de 99.0 5E-09 1.1E-13 102.7 12.1 34 29-62 1-34 (365)
121 PRK06481 fumarate reductase fl 99.0 1.6E-08 3.4E-13 102.9 16.1 41 27-67 60-100 (506)
122 KOG1399 Flavin-containing mono 99.0 8.7E-09 1.9E-13 100.9 13.3 44 26-69 4-47 (448)
123 PLN02464 glycerol-3-phosphate 99.0 3.4E-07 7.3E-12 95.1 25.5 41 26-66 69-109 (627)
124 PRK08294 phenol 2-monooxygenas 98.9 2.5E-07 5.4E-12 96.4 24.1 38 25-62 29-67 (634)
125 TIGR03219 salicylate_mono sali 98.9 7.5E-09 1.6E-13 103.1 12.5 44 239-282 118-161 (414)
126 PF00996 GDI: GDP dissociation 98.9 2.5E-08 5.5E-13 97.1 15.6 228 25-275 1-284 (438)
127 PRK08274 tricarballylate dehyd 98.9 3.6E-08 7.8E-13 99.8 16.9 42 26-67 2-45 (466)
128 PRK13369 glycerol-3-phosphate 98.9 6.3E-09 1.4E-13 105.8 11.2 43 25-67 3-45 (502)
129 TIGR00275 flavoprotein, HI0933 98.9 1.3E-08 2.9E-13 100.2 12.7 37 32-68 1-37 (400)
130 COG0578 GlpA Glycerol-3-phosph 98.9 1.4E-07 3E-12 93.3 18.5 42 27-68 11-52 (532)
131 COG2072 TrkA Predicted flavopr 98.9 2E-08 4.4E-13 99.8 12.9 53 25-77 5-58 (443)
132 PRK09897 hypothetical protein; 98.9 3.9E-08 8.4E-13 99.2 14.7 42 28-69 1-45 (534)
133 KOG2614 Kynurenine 3-monooxyge 98.9 2.7E-07 5.7E-12 86.8 18.7 36 28-63 2-37 (420)
134 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 3.6E-08 7.8E-13 97.2 13.4 36 27-62 1-36 (390)
135 PF13454 NAD_binding_9: FAD-NA 98.8 7E-08 1.5E-12 81.8 13.4 48 231-278 107-155 (156)
136 PRK06475 salicylate hydroxylas 98.8 3.5E-08 7.6E-13 97.8 13.3 53 231-283 113-170 (400)
137 PRK12845 3-ketosteroid-delta-1 98.8 1.1E-07 2.4E-12 97.5 17.2 42 26-68 14-55 (564)
138 TIGR03140 AhpF alkyl hydropero 98.8 7.2E-08 1.6E-12 98.4 14.2 42 238-279 281-322 (515)
139 PRK05192 tRNA uridine 5-carbox 98.8 7.5E-08 1.6E-12 97.2 13.6 40 27-66 3-43 (618)
140 PRK07573 sdhA succinate dehydr 98.8 6.1E-08 1.3E-12 100.9 13.5 39 27-65 34-72 (640)
141 PRK06134 putative FAD-binding 98.8 2.4E-07 5.2E-12 95.8 17.7 44 25-68 9-52 (581)
142 PF00743 FMO-like: Flavin-bind 98.8 3.7E-08 8.1E-13 99.7 11.3 41 29-69 2-42 (531)
143 PRK12842 putative succinate de 98.8 2.2E-07 4.8E-12 96.1 17.2 43 26-68 7-49 (574)
144 PRK07121 hypothetical protein; 98.8 2.2E-07 4.8E-12 94.5 16.9 42 27-68 19-60 (492)
145 PRK06175 L-aspartate oxidase; 98.8 1.1E-07 2.4E-12 94.7 14.0 39 27-66 3-41 (433)
146 PTZ00367 squalene epoxidase; P 98.8 1.4E-06 3E-11 89.0 22.1 37 25-61 30-66 (567)
147 TIGR01789 lycopene_cycl lycope 98.8 1.4E-06 3E-11 85.0 21.2 36 30-65 1-38 (370)
148 PRK15317 alkyl hydroperoxide r 98.8 1.1E-07 2.4E-12 97.2 14.1 42 238-279 280-321 (517)
149 PRK07843 3-ketosteroid-delta-1 98.7 6.4E-07 1.4E-11 92.2 18.6 43 26-68 5-47 (557)
150 PRK07804 L-aspartate oxidase; 98.7 1.8E-07 3.9E-12 95.9 14.1 41 26-66 14-54 (541)
151 PLN02927 antheraxanthin epoxid 98.7 1.3E-07 2.8E-12 97.1 13.0 41 241-281 209-249 (668)
152 PF12831 FAD_oxidored: FAD dep 98.7 2.6E-08 5.5E-13 99.2 7.4 40 30-69 1-40 (428)
153 PRK07818 dihydrolipoamide dehy 98.7 2.6E-07 5.6E-12 93.4 14.4 41 27-68 3-43 (466)
154 PRK12837 3-ketosteroid-delta-1 98.7 7.5E-07 1.6E-11 90.9 17.3 41 27-68 6-46 (513)
155 PRK12839 hypothetical protein; 98.7 7.5E-07 1.6E-11 91.7 17.1 44 25-68 5-48 (572)
156 PRK12844 3-ketosteroid-delta-1 98.7 1.1E-06 2.4E-11 90.3 18.2 42 27-68 5-46 (557)
157 PRK08071 L-aspartate oxidase; 98.7 3.9E-07 8.6E-12 92.7 14.6 39 28-67 3-41 (510)
158 PRK07803 sdhA succinate dehydr 98.6 4.7E-07 1E-11 94.3 14.6 39 27-65 7-45 (626)
159 PRK05945 sdhA succinate dehydr 98.6 5.6E-07 1.2E-11 93.0 14.9 39 28-66 3-43 (575)
160 PF01134 GIDA: Glucose inhibit 98.6 8.6E-08 1.9E-12 91.6 7.8 40 238-278 110-150 (392)
161 TIGR00551 nadB L-aspartate oxi 98.6 5.3E-07 1.2E-11 91.5 14.0 39 28-67 2-40 (488)
162 PRK08401 L-aspartate oxidase; 98.6 7.8E-07 1.7E-11 89.7 15.0 34 28-61 1-34 (466)
163 PRK06069 sdhA succinate dehydr 98.6 1.3E-06 2.9E-11 90.4 16.5 41 27-67 4-47 (577)
164 PRK06263 sdhA succinate dehydr 98.6 9.5E-07 2.1E-11 90.8 15.1 39 27-66 6-45 (543)
165 PF07156 Prenylcys_lyase: Pren 98.6 4.1E-06 9E-11 80.4 18.3 102 178-280 76-187 (368)
166 COG2509 Uncharacterized FAD-de 98.6 6.3E-06 1.4E-10 78.6 18.9 47 231-277 179-227 (486)
167 PRK12843 putative FAD-binding 98.6 2.6E-06 5.6E-11 88.2 17.7 43 26-68 14-56 (578)
168 PTZ00139 Succinate dehydrogena 98.6 1.6E-06 3.5E-11 90.1 16.2 41 27-67 28-68 (617)
169 COG1148 HdrA Heterodisulfide r 98.6 6.8E-08 1.5E-12 91.8 4.8 57 13-69 109-165 (622)
170 PRK07395 L-aspartate oxidase; 98.5 8E-07 1.7E-11 91.0 12.9 41 26-67 7-47 (553)
171 PRK08958 sdhA succinate dehydr 98.5 1.1E-06 2.4E-11 90.8 14.0 40 27-66 6-45 (588)
172 PLN00128 Succinate dehydrogena 98.5 1.9E-06 4.2E-11 89.5 15.7 41 27-67 49-89 (635)
173 PRK08275 putative oxidoreducta 98.5 9.8E-07 2.1E-11 90.9 13.4 39 27-65 8-48 (554)
174 PRK06854 adenylylsulfate reduc 98.5 2.4E-06 5.3E-11 88.7 16.2 38 27-64 10-49 (608)
175 PRK07512 L-aspartate oxidase; 98.5 9.3E-07 2E-11 90.1 12.9 35 26-62 7-41 (513)
176 PRK09231 fumarate reductase fl 98.5 1.4E-06 3E-11 90.1 14.0 41 27-67 3-45 (582)
177 TIGR02485 CobZ_N-term precorri 98.5 1.2E-06 2.6E-11 87.7 13.1 34 33-66 1-36 (432)
178 KOG2844 Dimethylglycine dehydr 98.5 1.1E-06 2.4E-11 86.8 11.6 63 217-280 172-243 (856)
179 PRK12779 putative bifunctional 98.5 1.5E-07 3.3E-12 101.5 6.2 42 27-68 305-346 (944)
180 PTZ00306 NADH-dependent fumara 98.5 2E-06 4.3E-11 95.8 15.1 42 26-67 407-448 (1167)
181 TIGR01176 fum_red_Fp fumarate 98.5 2.3E-06 4.9E-11 88.3 14.4 40 28-67 3-44 (580)
182 PRK09078 sdhA succinate dehydr 98.5 3E-06 6.4E-11 87.9 15.3 40 27-66 11-50 (598)
183 PRK08626 fumarate reductase fl 98.5 2.8E-06 6E-11 88.8 14.9 39 27-65 4-42 (657)
184 TIGR01811 sdhA_Bsu succinate d 98.5 2.1E-06 4.5E-11 89.0 13.7 35 31-65 1-35 (603)
185 PLN02852 ferredoxin-NADP+ redu 98.5 2.4E-07 5.2E-12 92.4 6.5 45 25-69 23-69 (491)
186 PLN02815 L-aspartate oxidase 98.5 2E-06 4.3E-11 88.6 13.3 41 26-67 27-67 (594)
187 PRK05249 soluble pyridine nucl 98.5 1.8E-07 3.8E-12 94.7 5.3 43 27-69 4-46 (461)
188 TIGR03315 Se_ygfK putative sel 98.5 2.2E-07 4.8E-12 99.4 6.1 43 27-69 536-578 (1012)
189 COG0029 NadB Aspartate oxidase 98.4 6.2E-05 1.3E-09 72.9 21.2 32 30-62 9-40 (518)
190 PRK08205 sdhA succinate dehydr 98.4 7.7E-06 1.7E-10 84.8 16.4 38 27-65 4-41 (583)
191 PRK06115 dihydrolipoamide dehy 98.4 2.5E-07 5.4E-12 93.3 5.4 41 28-68 3-43 (466)
192 PRK06116 glutathione reductase 98.4 2.5E-07 5.4E-12 93.2 5.0 42 26-68 2-43 (450)
193 PRK12831 putative oxidoreducta 98.4 3.5E-07 7.7E-12 91.9 6.0 43 26-68 138-180 (464)
194 PRK06467 dihydrolipoamide dehy 98.4 3.3E-07 7.2E-12 92.5 5.7 43 26-68 2-44 (471)
195 PF06039 Mqo: Malate:quinone o 98.4 1.5E-05 3.2E-10 76.8 16.3 43 27-69 2-46 (488)
196 TIGR01424 gluta_reduc_2 glutat 98.4 3.2E-07 6.9E-12 92.1 5.4 41 28-69 2-42 (446)
197 PLN02985 squalene monooxygenas 98.4 8.2E-07 1.8E-11 90.1 7.8 43 20-62 35-77 (514)
198 PRK05976 dihydrolipoamide dehy 98.4 4.1E-07 8.9E-12 92.1 5.7 44 25-69 1-44 (472)
199 TIGR01421 gluta_reduc_1 glutat 98.4 3.7E-07 8E-12 91.6 5.2 41 27-68 1-41 (450)
200 TIGR03143 AhpF_homolog putativ 98.4 5E-07 1.1E-11 93.0 6.2 43 26-69 2-44 (555)
201 PRK07251 pyridine nucleotide-d 98.4 4.2E-07 9.2E-12 91.2 5.5 41 28-68 3-44 (438)
202 TIGR01350 lipoamide_DH dihydro 98.4 4E-07 8.6E-12 92.1 5.3 41 28-69 1-41 (461)
203 KOG2404 Fumarate reductase, fl 98.4 1E-05 2.3E-10 73.3 13.3 39 30-68 11-49 (477)
204 PRK09853 putative selenate red 98.3 5E-07 1.1E-11 96.3 5.7 43 27-69 538-580 (1019)
205 PRK06370 mercuric reductase; V 98.3 5.3E-07 1.2E-11 91.1 5.5 44 25-69 2-45 (463)
206 PRK08010 pyridine nucleotide-d 98.3 5.4E-07 1.2E-11 90.5 5.5 43 27-69 2-45 (441)
207 PF04820 Trp_halogenase: Trypt 98.3 5.2E-06 1.1E-10 83.1 12.1 43 237-280 167-211 (454)
208 KOG2665 Predicted FAD-dependen 98.3 1.8E-05 4E-10 71.5 14.1 47 25-71 45-93 (453)
209 PRK06416 dihydrolipoamide dehy 98.3 6.1E-07 1.3E-11 90.7 5.4 42 27-69 3-44 (462)
210 KOG2415 Electron transfer flav 98.3 7E-07 1.5E-11 83.4 4.7 44 26-69 74-123 (621)
211 PRK10262 thioredoxin reductase 98.3 9.1E-07 2E-11 84.9 5.7 44 24-68 2-45 (321)
212 PTZ00188 adrenodoxin reductase 98.3 1.2E-06 2.7E-11 86.0 6.3 43 27-69 38-81 (506)
213 PRK12769 putative oxidoreducta 98.3 9.8E-07 2.1E-11 92.8 5.9 43 27-69 326-368 (654)
214 KOG2853 Possible oxidoreductas 98.3 9.2E-05 2E-09 67.8 17.5 36 27-62 85-124 (509)
215 PRK06292 dihydrolipoamide dehy 98.3 8.8E-07 1.9E-11 89.6 5.3 41 27-68 2-42 (460)
216 PRK12775 putative trifunctiona 98.3 9.7E-07 2.1E-11 96.3 5.8 43 27-69 429-471 (1006)
217 PRK12834 putative FAD-binding 98.3 1.1E-06 2.4E-11 90.4 5.8 43 26-68 2-46 (549)
218 TIGR01316 gltA glutamate synth 98.3 1.3E-06 2.9E-11 87.5 6.1 42 27-68 132-173 (449)
219 PRK14694 putative mercuric red 98.2 1.2E-06 2.6E-11 88.6 5.6 43 26-69 4-46 (468)
220 PRK14727 putative mercuric red 98.2 1.3E-06 2.8E-11 88.6 5.7 44 26-69 14-57 (479)
221 PTZ00052 thioredoxin reductase 98.2 1.3E-06 2.7E-11 88.8 5.6 49 230-278 227-276 (499)
222 COG1252 Ndh NADH dehydrogenase 98.2 3.9E-05 8.5E-10 74.0 15.3 36 27-62 2-39 (405)
223 PRK06327 dihydrolipoamide dehy 98.2 1.3E-06 2.8E-11 88.5 5.4 44 26-69 2-51 (475)
224 PLN02507 glutathione reductase 98.2 1.7E-06 3.6E-11 87.9 6.1 44 26-69 23-75 (499)
225 PTZ00058 glutathione reductase 98.2 1.4E-06 3.1E-11 88.9 5.5 43 26-69 46-88 (561)
226 TIGR02053 MerA mercuric reduct 98.2 1.3E-06 2.9E-11 88.2 5.3 39 29-68 1-39 (463)
227 TIGR00136 gidA glucose-inhibit 98.2 3.1E-05 6.8E-10 78.5 14.5 39 29-67 1-39 (617)
228 PRK13748 putative mercuric red 98.2 1.6E-06 3.4E-11 90.1 5.4 42 27-69 97-138 (561)
229 PRK12778 putative bifunctional 98.2 1.9E-06 4E-11 92.2 6.0 42 27-68 430-471 (752)
230 PRK05335 tRNA (uracil-5-)-meth 98.2 2.1E-06 4.5E-11 83.1 5.5 37 28-64 2-38 (436)
231 PRK12810 gltD glutamate syntha 98.2 2.4E-06 5.1E-11 86.4 6.1 42 27-68 142-183 (471)
232 KOG2960 Protein involved in th 98.2 5.9E-07 1.3E-11 76.1 1.4 67 28-104 76-144 (328)
233 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2.7E-06 5.9E-11 84.0 5.9 44 26-69 2-45 (454)
234 KOG0399 Glutamate synthase [Am 98.2 2.1E-06 4.5E-11 89.2 5.1 43 27-69 1784-1826(2142)
235 COG0493 GltD NADPH-dependent g 98.1 2.5E-06 5.3E-11 84.3 5.3 43 27-69 122-164 (457)
236 PRK12814 putative NADPH-depend 98.1 2.8E-06 6.2E-11 89.0 6.1 42 27-68 192-233 (652)
237 PRK12809 putative oxidoreducta 98.1 3E-06 6.4E-11 88.8 6.0 43 27-69 309-351 (639)
238 TIGR01318 gltD_gamma_fam gluta 98.1 3.2E-06 7E-11 85.1 5.9 43 27-69 140-182 (467)
239 PRK11749 dihydropyrimidine deh 98.1 3.1E-06 6.7E-11 85.3 5.8 43 26-68 138-180 (457)
240 PRK06567 putative bifunctional 98.1 2.7E-06 5.9E-11 89.8 5.3 39 27-65 382-420 (1028)
241 TIGR03197 MnmC_Cterm tRNA U-34 98.1 6.4E-05 1.4E-09 74.1 14.7 52 229-280 139-190 (381)
242 PRK13800 putative oxidoreducta 98.1 5.4E-05 1.2E-09 82.5 15.1 36 27-62 12-47 (897)
243 KOG1439 RAB proteins geranylge 98.1 7.2E-05 1.6E-09 70.1 13.6 45 27-71 3-47 (440)
244 PRK12835 3-ketosteroid-delta-1 98.1 3.6E-06 7.8E-11 87.0 5.5 42 26-67 9-50 (584)
245 PRK09564 coenzyme A disulfide 98.1 3.5E-05 7.5E-10 77.7 12.5 36 29-64 1-38 (444)
246 TIGR01423 trypano_reduc trypan 98.1 3.8E-06 8.3E-11 84.8 5.4 43 27-69 2-53 (486)
247 TIGR01372 soxA sarcosine oxida 98.1 4.4E-06 9.5E-11 91.7 5.7 43 27-69 162-204 (985)
248 PRK08641 sdhA succinate dehydr 98.1 4.6E-06 1E-10 86.3 5.4 39 28-66 3-41 (589)
249 PLN02546 glutathione reductase 98.0 5.6E-06 1.2E-10 84.7 5.3 42 28-69 79-129 (558)
250 TIGR02352 thiamin_ThiO glycine 98.0 0.00067 1.4E-08 65.6 19.5 51 229-280 141-193 (337)
251 TIGR01317 GOGAT_sm_gam glutama 98.0 7.2E-06 1.6E-10 83.0 5.9 42 27-68 142-183 (485)
252 PRK07057 sdhA succinate dehydr 98.0 6.9E-06 1.5E-10 85.1 5.4 41 27-67 11-51 (591)
253 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 7.4E-06 1.6E-10 79.9 5.1 37 29-65 1-37 (433)
254 PRK12771 putative glutamate sy 98.0 9.4E-06 2E-10 84.0 6.3 43 26-68 135-177 (564)
255 TIGR02462 pyranose_ox pyranose 98.0 1.3E-05 2.8E-10 81.0 6.5 37 29-65 1-37 (544)
256 PTZ00153 lipoamide dehydrogena 97.9 1.1E-05 2.4E-10 83.7 5.9 42 28-69 116-158 (659)
257 PF00070 Pyr_redox: Pyridine n 97.9 1.9E-05 4.2E-10 58.4 5.3 35 30-64 1-35 (80)
258 PRK06912 acoL dihydrolipoamide 97.9 1.2E-05 2.6E-10 81.1 5.1 38 30-68 2-39 (458)
259 PRK12770 putative glutamate sy 97.9 2E-05 4.3E-10 76.7 6.5 44 26-69 16-59 (352)
260 PF07992 Pyr_redox_2: Pyridine 97.9 1.3E-05 2.7E-10 71.3 4.7 33 30-62 1-33 (201)
261 PRK05329 anaerobic glycerol-3- 97.9 1.4E-05 3E-10 78.6 5.2 35 27-61 1-35 (422)
262 COG4529 Uncharacterized protei 97.9 0.0002 4.4E-09 69.4 12.9 40 28-67 1-43 (474)
263 KOG1298 Squalene monooxygenase 97.9 1.2E-05 2.7E-10 74.6 4.4 36 25-60 42-77 (509)
264 PRK09754 phenylpropionate diox 97.9 0.00014 3.1E-09 71.9 12.2 41 237-278 199-239 (396)
265 TIGR01438 TGR thioredoxin and 97.9 1.5E-05 3.2E-10 80.7 5.1 41 28-68 2-50 (484)
266 PF00732 GMC_oxred_N: GMC oxid 97.9 1.2E-05 2.5E-10 76.4 4.0 36 29-64 1-37 (296)
267 COG3075 GlpB Anaerobic glycero 97.9 1.6E-05 3.5E-10 72.3 4.5 33 27-59 1-33 (421)
268 PRK04965 NADH:flavorubredoxin 97.9 0.00017 3.6E-09 70.9 12.1 41 238-278 197-237 (377)
269 PRK07845 flavoprotein disulfid 97.8 1.9E-05 4E-10 79.8 5.3 41 28-69 1-41 (466)
270 PRK07846 mycothione reductase; 97.8 0.00019 4.1E-09 72.2 12.4 42 237-278 219-260 (451)
271 KOG1800 Ferredoxin/adrenodoxin 97.8 2.7E-05 5.8E-10 72.4 5.4 43 27-69 19-63 (468)
272 PRK13984 putative oxidoreducta 97.8 2.6E-05 5.6E-10 81.6 6.1 43 26-68 281-323 (604)
273 TIGR01350 lipoamide_DH dihydro 97.8 0.0002 4.3E-09 72.6 12.3 41 238-278 225-267 (461)
274 COG1249 Lpd Pyruvate/2-oxoglut 97.8 0.00021 4.5E-09 70.8 12.0 40 238-277 228-269 (454)
275 PRK05249 soluble pyridine nucl 97.8 0.00022 4.8E-09 72.2 12.5 41 238-278 230-270 (461)
276 PRK08255 salicylyl-CoA 5-hydro 97.8 2.3E-05 4.9E-10 83.9 5.0 34 29-62 1-36 (765)
277 PRK06416 dihydrolipoamide dehy 97.8 0.00025 5.4E-09 71.8 12.1 41 238-278 227-270 (462)
278 PRK09077 L-aspartate oxidase; 97.8 2.9E-05 6.2E-10 79.8 5.2 39 27-66 7-45 (536)
279 COG1053 SdhA Succinate dehydro 97.8 3.1E-05 6.7E-10 78.8 5.3 43 26-68 4-46 (562)
280 TIGR03452 mycothione_red mycot 97.7 0.00034 7.5E-09 70.4 12.6 42 237-278 222-263 (452)
281 COG3573 Predicted oxidoreducta 97.7 4.4E-05 9.5E-10 69.7 4.9 40 27-66 4-45 (552)
282 TIGR01421 gluta_reduc_1 glutat 97.7 0.00043 9.4E-09 69.6 12.7 35 28-62 166-200 (450)
283 COG4716 Myosin-crossreactive a 97.7 0.00015 3.1E-09 67.4 8.3 43 27-69 21-67 (587)
284 PRK02106 choline dehydrogenase 97.7 4.1E-05 8.9E-10 79.3 5.1 37 25-61 2-39 (560)
285 PLN02507 glutathione reductase 97.7 0.00049 1.1E-08 70.0 12.7 41 238-278 258-298 (499)
286 PRK06116 glutathione reductase 97.7 0.00053 1.1E-08 69.2 12.6 41 238-278 222-263 (450)
287 TIGR02061 aprA adenosine phosp 97.7 4.8E-05 1E-09 78.6 5.0 33 30-62 1-37 (614)
288 KOG2852 Possible oxidoreductas 97.6 2.3E-05 5E-10 70.0 2.0 43 25-67 7-55 (380)
289 TIGR01424 gluta_reduc_2 glutat 97.6 0.00064 1.4E-08 68.4 12.6 41 238-278 221-261 (446)
290 PRK07845 flavoprotein disulfid 97.6 0.00062 1.3E-08 68.9 12.4 41 238-278 232-272 (466)
291 KOG1335 Dihydrolipoamide dehyd 97.6 8.8E-05 1.9E-09 69.1 5.6 43 27-69 38-80 (506)
292 COG5044 MRS6 RAB proteins gera 97.6 0.0011 2.3E-08 61.8 12.3 44 27-70 5-48 (434)
293 PF13434 K_oxygenase: L-lysine 97.6 0.0001 2.3E-09 70.7 6.0 35 28-62 2-37 (341)
294 PRK07251 pyridine nucleotide-d 97.6 0.00077 1.7E-08 67.7 12.5 35 28-62 157-191 (438)
295 TIGR02374 nitri_red_nirB nitri 97.6 0.00044 9.4E-09 74.3 11.0 40 238-279 68-107 (785)
296 TIGR02053 MerA mercuric reduct 97.6 0.00087 1.9E-08 67.9 12.3 35 28-62 166-200 (463)
297 TIGR02374 nitri_red_nirB nitri 97.5 0.00064 1.4E-08 73.1 11.7 41 238-278 196-236 (785)
298 PRK14989 nitrite reductase sub 97.5 0.00054 1.2E-08 73.8 11.0 40 238-279 73-112 (847)
299 TIGR03452 mycothione_red mycot 97.5 9.3E-05 2E-09 74.5 5.0 38 28-68 2-39 (452)
300 PRK07818 dihydrolipoamide dehy 97.5 0.001 2.2E-08 67.5 12.3 34 28-61 172-205 (466)
301 PRK06327 dihydrolipoamide dehy 97.5 0.00091 2E-08 67.9 12.0 35 28-62 183-217 (475)
302 PRK07846 mycothione reductase; 97.5 9.1E-05 2E-09 74.4 4.6 38 28-68 1-38 (451)
303 PRK05976 dihydrolipoamide dehy 97.5 0.0011 2.4E-08 67.2 12.4 35 28-62 180-214 (472)
304 COG0445 GidA Flavin-dependent 97.5 0.00099 2.1E-08 65.5 11.2 35 27-61 3-37 (621)
305 PRK06370 mercuric reductase; V 97.5 0.0011 2.4E-08 67.1 12.3 36 28-63 171-206 (463)
306 PRK06115 dihydrolipoamide dehy 97.5 0.0012 2.5E-08 66.9 12.2 35 28-62 174-208 (466)
307 TIGR03378 glycerol3P_GlpB glyc 97.5 0.00014 3E-09 70.9 4.9 51 229-279 267-321 (419)
308 PRK06912 acoL dihydrolipoamide 97.5 0.0015 3.2E-08 66.0 12.6 35 28-62 170-204 (458)
309 PTZ00052 thioredoxin reductase 97.5 0.0014 3.1E-08 66.7 12.5 31 29-59 183-213 (499)
310 TIGR03385 CoA_CoA_reduc CoA-di 97.4 0.0014 3E-08 65.7 11.8 35 28-62 137-171 (427)
311 PRK14989 nitrite reductase sub 97.4 0.0013 2.8E-08 70.9 12.1 40 238-277 201-242 (847)
312 PRK14727 putative mercuric red 97.4 0.0018 4E-08 65.7 12.5 41 238-279 242-282 (479)
313 TIGR01423 trypano_reduc trypan 97.4 0.002 4.3E-08 65.3 12.5 41 237-277 244-285 (486)
314 PRK06467 dihydrolipoamide dehy 97.4 0.0019 4E-08 65.5 12.1 34 29-62 175-208 (471)
315 PRK08010 pyridine nucleotide-d 97.4 0.002 4.3E-08 64.8 12.1 40 238-278 213-252 (441)
316 TIGR01438 TGR thioredoxin and 97.4 0.0021 4.6E-08 65.2 12.2 31 29-59 181-211 (484)
317 COG2303 BetA Choline dehydroge 97.4 0.00018 3.9E-09 73.7 4.4 37 25-61 4-40 (542)
318 PRK13512 coenzyme A disulfide 97.4 0.00023 5E-09 71.4 5.1 37 28-64 1-39 (438)
319 PRK09564 coenzyme A disulfide 97.3 0.0022 4.8E-08 64.6 12.2 34 28-61 149-182 (444)
320 PRK14694 putative mercuric red 97.3 0.0026 5.6E-08 64.5 12.3 40 238-278 232-271 (468)
321 PRK13748 putative mercuric red 97.3 0.0024 5.2E-08 66.4 12.3 40 238-278 324-363 (561)
322 PRK13512 coenzyme A disulfide 97.3 0.0022 4.8E-08 64.3 11.3 34 29-62 149-182 (438)
323 PTZ00058 glutathione reductase 97.2 0.0037 7.9E-08 64.3 12.4 35 28-62 237-271 (561)
324 TIGR01810 betA choline dehydro 97.2 0.00028 6E-09 72.7 4.0 32 30-61 1-33 (532)
325 PRK09754 phenylpropionate diox 97.2 0.00043 9.3E-09 68.5 5.1 41 237-279 71-111 (396)
326 PLN02785 Protein HOTHEAD 97.1 0.00055 1.2E-08 70.7 5.3 35 26-61 53-87 (587)
327 PTZ00318 NADH dehydrogenase-li 97.1 0.00059 1.3E-08 68.1 4.8 37 26-62 8-44 (424)
328 TIGR03377 glycerol3P_GlpA glyc 97.1 0.025 5.4E-07 58.2 16.4 44 237-280 141-190 (516)
329 KOG4716 Thioredoxin reductase 97.0 0.0015 3.2E-08 60.1 6.3 69 26-102 17-85 (503)
330 COG0446 HcaD Uncharacterized N 97.0 0.00077 1.7E-08 67.2 4.9 40 28-67 136-175 (415)
331 KOG0405 Pyridine nucleotide-di 97.0 0.00093 2E-08 61.6 4.8 44 26-69 18-61 (478)
332 PLN02546 glutathione reductase 97.0 0.008 1.7E-07 61.8 12.1 35 28-62 252-286 (558)
333 PTZ00318 NADH dehydrogenase-li 96.8 0.01 2.2E-07 59.3 11.2 37 238-278 242-278 (424)
334 PRK04965 NADH:flavorubredoxin 96.8 0.0016 3.4E-08 64.1 5.2 34 28-61 2-37 (377)
335 COG1206 Gid NAD(FAD)-utilizing 96.6 0.0019 4.1E-08 59.2 3.8 37 28-64 3-39 (439)
336 KOG3923 D-aspartate oxidase [A 96.6 0.0016 3.5E-08 58.9 3.2 33 27-59 2-41 (342)
337 KOG1335 Dihydrolipoamide dehyd 96.6 0.012 2.6E-07 55.4 8.6 38 28-65 211-248 (506)
338 TIGR03862 flavo_PP4765 unchara 96.6 0.069 1.5E-06 51.8 14.4 56 220-277 76-138 (376)
339 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.0026 5.6E-08 55.3 3.7 33 29-61 1-33 (185)
340 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0031 6.7E-08 53.4 4.0 32 30-61 1-32 (157)
341 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0046 9.9E-08 53.6 4.5 32 30-61 1-32 (180)
342 KOG3855 Monooxygenase involved 96.4 0.004 8.7E-08 59.0 4.2 36 26-61 34-73 (481)
343 TIGR03169 Nterm_to_SelD pyridi 96.3 0.0037 8.1E-08 61.1 4.1 33 30-62 1-36 (364)
344 PRK01438 murD UDP-N-acetylmura 96.3 0.0056 1.2E-07 62.3 5.1 36 27-62 15-50 (480)
345 PRK02705 murD UDP-N-acetylmura 96.2 0.0048 1E-07 62.5 4.5 34 30-63 2-35 (459)
346 PRK06129 3-hydroxyacyl-CoA deh 96.1 0.0067 1.5E-07 57.7 4.6 34 29-62 3-36 (308)
347 KOG0404 Thioredoxin reductase 96.0 0.02 4.4E-07 49.7 6.3 45 25-69 5-53 (322)
348 PF02558 ApbA: Ketopantoate re 95.9 0.012 2.5E-07 49.5 4.7 31 31-61 1-31 (151)
349 PRK07819 3-hydroxybutyryl-CoA 95.9 0.011 2.4E-07 55.5 4.6 34 28-61 5-38 (286)
350 COG3634 AhpF Alkyl hydroperoxi 95.8 0.0053 1.2E-07 56.8 2.4 32 26-57 209-240 (520)
351 KOG0042 Glycerol-3-phosphate d 95.8 0.0044 9.5E-08 60.7 1.7 42 26-67 65-106 (680)
352 PRK08229 2-dehydropantoate 2-r 95.7 0.013 2.9E-07 56.7 4.9 33 28-60 2-34 (341)
353 PRK07530 3-hydroxybutyryl-CoA 95.7 0.016 3.5E-07 54.7 5.2 35 27-61 3-37 (292)
354 COG1251 NirB NAD(P)H-nitrite r 95.7 0.028 6.1E-07 57.6 6.9 40 238-277 201-240 (793)
355 COG1004 Ugd Predicted UDP-gluc 95.6 0.014 3E-07 55.5 4.4 33 29-61 1-33 (414)
356 KOG1238 Glucose dehydrogenase/ 95.6 0.012 2.6E-07 59.4 4.2 38 26-63 55-93 (623)
357 PRK07066 3-hydroxybutyryl-CoA 95.6 0.017 3.6E-07 54.8 4.8 34 28-61 7-40 (321)
358 COG0686 Ald Alanine dehydrogen 95.6 0.016 3.5E-07 53.0 4.2 45 26-70 166-218 (371)
359 PRK06249 2-dehydropantoate 2-r 95.6 0.02 4.4E-07 54.6 5.3 35 27-61 4-38 (313)
360 PF13434 K_oxygenase: L-lysine 95.5 0.33 7.1E-06 46.8 13.5 41 238-278 293-339 (341)
361 KOG2311 NAD/FAD-utilizing prot 95.5 0.018 4E-07 55.7 4.8 40 25-64 25-65 (679)
362 PRK05708 2-dehydropantoate 2-r 95.5 0.022 4.7E-07 54.1 5.2 33 28-60 2-34 (305)
363 PRK08293 3-hydroxybutyryl-CoA 95.5 0.019 4E-07 54.1 4.7 33 29-61 4-36 (287)
364 PRK06130 3-hydroxybutyryl-CoA 95.5 0.02 4.4E-07 54.6 5.0 37 25-61 1-37 (311)
365 PF01262 AlaDh_PNT_C: Alanine 95.5 0.023 5E-07 48.6 4.8 35 27-61 19-53 (168)
366 COG0569 TrkA K+ transport syst 95.4 0.02 4.3E-07 51.5 4.5 65 29-103 1-65 (225)
367 PRK09260 3-hydroxybutyryl-CoA 95.4 0.018 3.9E-07 54.2 4.4 33 29-61 2-34 (288)
368 PRK06292 dihydrolipoamide dehy 95.4 0.024 5.1E-07 57.5 5.3 36 28-63 169-204 (460)
369 COG3486 IucD Lysine/ornithine 95.3 0.17 3.6E-06 48.5 10.3 37 25-61 2-39 (436)
370 PRK14106 murD UDP-N-acetylmura 95.3 0.023 4.9E-07 57.4 5.0 34 28-61 5-38 (450)
371 TIGR03169 Nterm_to_SelD pyridi 95.3 0.16 3.5E-06 49.7 10.8 37 238-278 205-241 (364)
372 PLN02545 3-hydroxybutyryl-CoA 95.2 0.025 5.4E-07 53.5 4.7 35 27-61 3-37 (295)
373 PF13738 Pyr_redox_3: Pyridine 95.2 0.024 5.2E-07 50.2 4.4 35 27-61 166-200 (203)
374 PRK04148 hypothetical protein; 95.1 0.024 5.1E-07 45.8 3.5 35 27-62 16-50 (134)
375 cd01080 NAD_bind_m-THF_DH_Cycl 95.1 0.036 7.8E-07 47.1 4.8 35 26-60 42-77 (168)
376 PRK11064 wecC UDP-N-acetyl-D-m 95.1 0.027 5.8E-07 55.9 4.5 34 28-61 3-36 (415)
377 PRK06522 2-dehydropantoate 2-r 95.1 0.029 6.2E-07 53.4 4.6 32 29-60 1-32 (304)
378 PRK14618 NAD(P)H-dependent gly 95.0 0.036 7.8E-07 53.3 5.2 34 28-61 4-37 (328)
379 PRK09424 pntA NAD(P) transhydr 95.0 0.041 8.9E-07 55.4 5.7 36 26-61 163-198 (509)
380 PRK12921 2-dehydropantoate 2-r 95.0 0.032 6.9E-07 53.1 4.7 31 29-59 1-31 (305)
381 PRK05808 3-hydroxybutyryl-CoA 94.9 0.033 7.2E-07 52.3 4.6 33 29-61 4-36 (282)
382 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.03 6.6E-07 52.8 4.3 33 29-61 4-36 (291)
383 PRK07531 bifunctional 3-hydrox 94.8 0.036 7.9E-07 56.4 4.9 35 27-61 3-37 (495)
384 TIGR01470 cysG_Nterm siroheme 94.8 0.048 1E-06 48.2 4.9 34 28-61 9-42 (205)
385 TIGR03140 AhpF alkyl hydropero 94.7 0.043 9.3E-07 56.3 5.2 35 28-62 352-386 (515)
386 COG0771 MurD UDP-N-acetylmuram 94.7 0.037 7.9E-07 54.6 4.2 36 28-63 7-42 (448)
387 PF01488 Shikimate_DH: Shikima 94.7 0.072 1.6E-06 43.7 5.4 35 27-61 11-46 (135)
388 PRK14619 NAD(P)H-dependent gly 94.6 0.054 1.2E-06 51.5 5.2 35 27-61 3-37 (308)
389 cd05292 LDH_2 A subgroup of L- 94.6 0.047 1E-06 51.8 4.8 33 29-61 1-35 (308)
390 PTZ00153 lipoamide dehydrogena 94.6 0.049 1.1E-06 57.1 5.1 36 29-64 313-348 (659)
391 TIGR03026 NDP-sugDHase nucleot 94.5 0.038 8.3E-07 54.9 4.2 33 30-62 2-34 (411)
392 PRK00094 gpsA NAD(P)H-dependen 94.5 0.051 1.1E-06 52.2 4.9 33 29-61 2-34 (325)
393 TIGR01763 MalateDH_bact malate 94.5 0.059 1.3E-06 51.0 5.1 33 29-61 2-35 (305)
394 PF13241 NAD_binding_7: Putati 94.5 0.041 8.8E-07 42.7 3.3 34 27-60 6-39 (103)
395 TIGR00561 pntA NAD(P) transhyd 94.4 0.073 1.6E-06 53.5 5.7 35 27-61 163-197 (511)
396 PF03446 NAD_binding_2: NAD bi 94.4 0.06 1.3E-06 45.8 4.5 34 28-61 1-34 (163)
397 TIGR00518 alaDH alanine dehydr 94.3 0.069 1.5E-06 52.0 5.3 35 27-61 166-200 (370)
398 PRK04690 murD UDP-N-acetylmura 94.3 0.052 1.1E-06 54.9 4.6 34 28-61 8-41 (468)
399 PRK10262 thioredoxin reductase 94.3 0.071 1.5E-06 51.1 5.3 34 28-61 146-179 (321)
400 PLN02353 probable UDP-glucose 94.3 0.053 1.2E-06 54.4 4.5 34 28-61 1-36 (473)
401 TIGR01316 gltA glutamate synth 94.3 0.061 1.3E-06 54.2 4.9 35 27-61 271-305 (449)
402 PRK15317 alkyl hydroperoxide r 94.2 0.069 1.5E-06 54.9 5.2 35 27-61 350-384 (517)
403 TIGR03143 AhpF_homolog putativ 94.2 0.068 1.5E-06 55.4 5.2 36 28-63 143-178 (555)
404 PRK01710 murD UDP-N-acetylmura 94.1 0.064 1.4E-06 54.2 4.7 34 28-61 14-47 (458)
405 PRK14620 NAD(P)H-dependent gly 94.0 0.073 1.6E-06 51.1 4.8 32 30-61 2-33 (326)
406 PRK06718 precorrin-2 dehydroge 94.0 0.091 2E-06 46.4 4.9 34 27-60 9-42 (202)
407 KOG4405 GDP dissociation inhib 94.0 0.057 1.2E-06 51.3 3.7 47 26-72 6-52 (547)
408 PRK03369 murD UDP-N-acetylmura 93.9 0.082 1.8E-06 53.8 5.1 34 27-60 11-44 (488)
409 PRK12831 putative oxidoreducta 93.9 0.082 1.8E-06 53.4 5.1 35 27-61 280-314 (464)
410 TIGR02354 thiF_fam2 thiamine b 93.8 0.093 2E-06 46.2 4.7 34 27-60 20-54 (200)
411 PRK07417 arogenate dehydrogena 93.8 0.077 1.7E-06 49.7 4.4 32 30-61 2-33 (279)
412 PRK15057 UDP-glucose 6-dehydro 93.8 0.082 1.8E-06 51.8 4.6 31 30-61 2-32 (388)
413 TIGR02441 fa_ox_alpha_mit fatt 93.7 0.1 2.2E-06 55.7 5.5 35 27-61 334-368 (737)
414 PRK04308 murD UDP-N-acetylmura 93.6 0.1 2.2E-06 52.6 5.2 35 28-62 5-39 (445)
415 PRK12770 putative glutamate sy 93.6 0.11 2.4E-06 50.5 5.2 34 28-61 172-206 (352)
416 COG1748 LYS9 Saccharopine dehy 93.5 0.1 2.2E-06 50.4 4.7 33 28-60 1-34 (389)
417 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.5 0.091 2E-06 53.4 4.6 34 28-61 5-38 (503)
418 PRK06719 precorrin-2 dehydroge 93.5 0.13 2.8E-06 43.3 4.8 31 28-58 13-43 (157)
419 TIGR01292 TRX_reduct thioredox 93.5 0.12 2.6E-06 48.8 5.1 34 28-61 141-174 (300)
420 KOG2755 Oxidoreductase [Genera 93.4 0.051 1.1E-06 48.5 2.2 33 30-62 1-35 (334)
421 PRK05675 sdhA succinate dehydr 93.4 1.1 2.3E-05 46.7 12.3 48 230-277 131-186 (570)
422 PRK08268 3-hydroxy-acyl-CoA de 93.4 0.1 2.2E-06 53.2 4.7 35 28-62 7-41 (507)
423 PRK00421 murC UDP-N-acetylmura 93.3 0.098 2.1E-06 52.9 4.4 36 27-62 6-42 (461)
424 KOG2304 3-hydroxyacyl-CoA dehy 93.3 0.096 2.1E-06 45.7 3.6 37 25-61 8-44 (298)
425 PRK06223 malate dehydrogenase; 93.2 0.14 3E-06 48.8 5.0 34 29-62 3-37 (307)
426 COG1893 ApbA Ketopantoate redu 93.1 0.1 2.2E-06 49.4 4.0 33 29-61 1-33 (307)
427 PRK08306 dipicolinate synthase 93.1 0.21 4.7E-06 47.0 6.1 35 27-61 151-185 (296)
428 PRK02472 murD UDP-N-acetylmura 93.1 0.12 2.6E-06 52.1 4.7 34 28-61 5-38 (447)
429 KOG3851 Sulfide:quinone oxidor 93.0 0.074 1.6E-06 49.0 2.7 37 25-61 36-74 (446)
430 PRK01368 murD UDP-N-acetylmura 93.0 0.11 2.4E-06 52.2 4.2 32 28-60 6-37 (454)
431 TIGR01915 npdG NADPH-dependent 93.0 0.15 3.2E-06 45.9 4.6 32 29-60 1-33 (219)
432 TIGR02437 FadB fatty oxidation 93.0 0.18 3.8E-06 53.7 5.9 35 27-61 312-346 (714)
433 cd00401 AdoHcyase S-adenosyl-L 92.9 0.15 3.3E-06 50.0 4.9 35 27-61 201-235 (413)
434 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.18 3.8E-06 44.5 4.9 35 27-61 27-61 (200)
435 PRK11559 garR tartronate semia 92.8 0.15 3.3E-06 48.2 4.7 34 28-61 2-35 (296)
436 cd05191 NAD_bind_amino_acid_DH 92.8 0.23 5E-06 36.9 4.7 33 27-59 22-55 (86)
437 PRK00141 murD UDP-N-acetylmura 92.7 0.15 3.2E-06 51.8 4.7 33 28-60 15-47 (473)
438 COG1250 FadB 3-hydroxyacyl-CoA 92.6 0.16 3.4E-06 47.6 4.4 33 28-60 3-35 (307)
439 PRK02006 murD UDP-N-acetylmura 92.6 0.15 3.3E-06 52.2 4.6 34 28-61 7-40 (498)
440 COG3634 AhpF Alkyl hydroperoxi 92.5 0.11 2.4E-06 48.4 3.2 45 17-61 343-387 (520)
441 PF00056 Ldh_1_N: lactate/mala 92.5 0.24 5.3E-06 40.9 4.9 33 29-61 1-36 (141)
442 PF00899 ThiF: ThiF family; I 92.5 0.18 3.9E-06 41.3 4.2 32 28-59 2-34 (135)
443 PRK11730 fadB multifunctional 92.4 0.15 3.3E-06 54.3 4.6 34 28-61 313-346 (715)
444 PRK15461 NADH-dependent gamma- 92.4 0.17 3.7E-06 47.8 4.4 33 29-61 2-34 (296)
445 PTZ00082 L-lactate dehydrogena 92.3 0.25 5.3E-06 47.1 5.4 36 27-62 5-41 (321)
446 COG1252 Ndh NADH dehydrogenase 92.2 0.12 2.5E-06 50.5 3.1 38 238-279 223-261 (405)
447 PRK11749 dihydropyrimidine deh 92.2 0.21 4.6E-06 50.5 5.2 35 27-61 272-307 (457)
448 TIGR02853 spore_dpaA dipicolin 92.2 0.2 4.4E-06 46.9 4.6 35 27-61 150-184 (287)
449 PRK03803 murD UDP-N-acetylmura 92.2 0.2 4.4E-06 50.5 4.9 35 27-61 5-39 (448)
450 PRK15116 sulfur acceptor prote 92.1 0.23 5.1E-06 45.7 4.8 33 27-59 29-62 (268)
451 PRK12778 putative bifunctional 92.1 0.22 4.8E-06 53.8 5.3 35 27-61 569-604 (752)
452 TIGR01505 tartro_sem_red 2-hyd 92.0 0.16 3.5E-06 47.9 3.8 32 30-61 1-32 (291)
453 PRK12549 shikimate 5-dehydroge 91.9 0.24 5.2E-06 46.4 4.8 35 27-61 126-161 (284)
454 cd05291 HicDH_like L-2-hydroxy 91.9 0.24 5.1E-06 47.1 4.8 32 30-61 2-35 (306)
455 PTZ00142 6-phosphogluconate de 91.9 0.19 4.1E-06 50.5 4.3 34 29-62 2-35 (470)
456 PRK00683 murD UDP-N-acetylmura 91.9 0.2 4.4E-06 49.9 4.5 33 29-61 4-36 (418)
457 PRK11199 tyrA bifunctional cho 91.7 0.24 5.2E-06 48.4 4.7 34 27-60 97-131 (374)
458 PRK14573 bifunctional D-alanyl 91.7 0.2 4.4E-06 54.5 4.6 35 27-61 3-38 (809)
459 PRK01390 murD UDP-N-acetylmura 91.7 0.2 4.4E-06 50.7 4.3 33 28-60 9-41 (460)
460 TIGR02440 FadJ fatty oxidation 91.5 0.23 5.1E-06 52.8 4.7 35 27-61 303-338 (699)
461 TIGR00936 ahcY adenosylhomocys 91.4 0.3 6.5E-06 47.8 4.9 35 27-61 194-228 (406)
462 cd05311 NAD_bind_2_malic_enz N 91.4 0.33 7.1E-06 43.7 4.8 34 27-60 24-60 (226)
463 KOG2495 NADH-dehydrogenase (ub 91.3 0.086 1.9E-06 50.6 1.1 35 27-61 217-265 (491)
464 PRK11880 pyrroline-5-carboxyla 91.3 0.26 5.7E-06 45.8 4.3 34 28-61 2-38 (267)
465 PF13478 XdhC_C: XdhC Rossmann 91.2 0.23 5.1E-06 40.6 3.4 31 31-61 1-31 (136)
466 PRK07688 thiamine/molybdopteri 91.2 0.31 6.8E-06 46.8 4.8 33 27-59 23-56 (339)
467 cd01078 NAD_bind_H4MPT_DH NADP 91.2 0.36 7.7E-06 42.4 4.8 34 27-60 27-61 (194)
468 cd05293 LDH_1 A subgroup of L- 91.1 0.36 7.9E-06 45.8 5.1 35 27-61 2-38 (312)
469 PF02254 TrkA_N: TrkA-N domain 91.1 0.41 8.8E-06 37.9 4.7 32 31-62 1-32 (116)
470 TIGR00872 gnd_rel 6-phosphoglu 91.1 0.3 6.6E-06 46.1 4.6 32 30-61 2-33 (298)
471 PRK12475 thiamine/molybdopteri 91.1 0.31 6.8E-06 46.8 4.7 33 28-60 24-57 (338)
472 cd01065 NAD_bind_Shikimate_DH 91.0 0.4 8.6E-06 40.2 4.8 35 27-61 18-53 (155)
473 PRK03815 murD UDP-N-acetylmura 91.0 0.25 5.5E-06 48.7 4.1 31 29-60 1-31 (401)
474 PRK08644 thiamine biosynthesis 90.9 0.38 8.3E-06 42.8 4.8 33 27-59 27-60 (212)
475 PRK07502 cyclohexadienyl dehyd 90.8 0.37 8.1E-06 45.8 5.0 34 28-61 6-41 (307)
476 PRK11154 fadJ multifunctional 90.8 0.28 6.1E-06 52.3 4.4 34 28-61 309-343 (708)
477 cd01339 LDH-like_MDH L-lactate 90.8 0.3 6.5E-06 46.2 4.3 31 31-61 1-32 (300)
478 PLN02657 3,8-divinyl protochlo 90.7 0.4 8.7E-06 47.3 5.2 37 25-61 57-94 (390)
479 COG2084 MmsB 3-hydroxyisobutyr 90.7 0.32 7E-06 45.0 4.2 34 29-62 1-34 (286)
480 TIGR00507 aroE shikimate 5-deh 90.6 0.39 8.5E-06 44.7 4.8 35 27-61 116-150 (270)
481 PRK09496 trkA potassium transp 90.6 0.31 6.7E-06 49.2 4.4 34 29-62 1-34 (453)
482 PTZ00117 malate dehydrogenase; 90.5 0.43 9.4E-06 45.5 5.1 35 27-61 4-39 (319)
483 PLN02256 arogenate dehydrogena 90.5 0.43 9.3E-06 45.1 4.9 35 27-61 35-69 (304)
484 COG0287 TyrA Prephenate dehydr 90.5 0.47 1E-05 44.0 5.1 36 27-62 2-37 (279)
485 PRK03806 murD UDP-N-acetylmura 90.4 0.36 7.8E-06 48.5 4.7 34 28-61 6-39 (438)
486 PRK12779 putative bifunctional 90.3 0.39 8.5E-06 52.8 5.2 34 28-61 447-480 (944)
487 PLN02172 flavin-containing mon 90.3 0.35 7.6E-06 48.7 4.4 35 27-61 203-237 (461)
488 PRK05690 molybdopterin biosynt 90.3 0.43 9.4E-06 43.6 4.7 33 27-59 31-64 (245)
489 cd01487 E1_ThiF_like E1_ThiF_l 90.2 0.48 1E-05 40.7 4.6 30 30-59 1-31 (174)
490 PRK05476 S-adenosyl-L-homocyst 90.2 0.43 9.4E-06 47.0 4.8 35 27-61 211-245 (425)
491 TIGR02355 moeB molybdopterin s 90.1 0.46 1E-05 43.2 4.7 32 28-59 24-56 (240)
492 PF00670 AdoHcyase_NAD: S-aden 90.1 0.4 8.7E-06 40.1 3.8 35 27-61 22-56 (162)
493 TIGR03378 glycerol3P_GlpB glyc 90.0 0.83 1.8E-05 45.0 6.6 33 29-61 1-33 (419)
494 PRK00066 ldh L-lactate dehydro 90.0 0.54 1.2E-05 44.7 5.2 35 27-61 5-41 (315)
495 PRK09599 6-phosphogluconate de 90.0 0.44 9.6E-06 45.1 4.6 32 30-61 2-33 (301)
496 PRK08017 oxidoreductase; Provi 89.8 0.52 1.1E-05 43.3 4.9 33 29-61 3-36 (256)
497 TIGR02356 adenyl_thiF thiazole 89.8 0.54 1.2E-05 41.6 4.7 33 27-59 20-53 (202)
498 COG2085 Predicted dinucleotide 89.7 0.46 1E-05 41.5 4.1 32 28-59 1-32 (211)
499 TIGR01087 murD UDP-N-acetylmur 89.7 0.39 8.5E-06 48.2 4.3 32 30-61 1-32 (433)
500 PLN02695 GDP-D-mannose-3',5'-e 89.6 0.67 1.4E-05 45.4 5.7 36 25-60 18-54 (370)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=5.8e-57 Score=450.71 Aligned_cols=434 Identities=84% Similarity=1.365 Sum_probs=363.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeecc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (491)
.+|+|||||+|||+||+.|.+.|++|+|+|+++++|||++|....|+.+|+|++|+++....+++.+|++++|++..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 47999999999999999999999999999999999999999888899999999999864345568999999999877655
Q ss_pred CCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhhhhHHHHH
Q 011202 109 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVL 188 (491)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (491)
....+.+......+.++...+..++......+...+.++.....+......++.++.+++..++...+.+...++.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELRLEGLAHEVL 160 (435)
T ss_pred CCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccccchHHHHHH
Confidence 44444443332334445555666777776777677777776666654445678899999988876654445566888888
Q ss_pred HHHHHhhhhhhcCCccccchhcccccccccCCccccccchHHHHHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEEE
Q 011202 189 QWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFV 268 (491)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ 268 (491)
++++.++.++++.+++++|+..+.....+.++...+.+|+++++++|.++++|+++++|++|...++++.|++.+|+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ 240 (435)
T PLN02268 161 QWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFV 240 (435)
T ss_pred HHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEEEECCCcEEE
Confidence 88877777888999999988766544445566678889999999999999999999999999998888999998998899
Q ss_pred cCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCcceeeecccccCCc
Q 011202 269 ADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGH 348 (491)
Q Consensus 269 ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 348 (491)
||+||+|+|+..++...+.|.|.+|+...+.+..+.+++..|+++.|+++||++..+.|.+.+....+.++.+....++.
T Consensus 241 ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~ 320 (435)
T PLN02268 241 ADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGH 320 (435)
T ss_pred cCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCC
Confidence 99999999999987656778899999999999999999999999999999999877777766554555566555445667
Q ss_pred eEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCc
Q 011202 349 CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN 428 (491)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 428 (491)
.+++++..+..+..+.+++++++++.++++|.+++|...+|..+.+++|..++++.|+|++..+|+.....+.+++|++|
T Consensus 321 ~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~ 400 (435)
T PLN02268 321 PVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDN 400 (435)
T ss_pred CEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCC
Confidence 78888888888888999999999999999999999987788999999999999999999988888877777889999999
Q ss_pred EEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 429 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 429 l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
|||||++++..++|+||||+.||.+||++|+..|
T Consensus 401 l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 401 LFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred eEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999889999999999999999998764
No 2
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=9.1e-47 Score=385.08 Aligned_cols=425 Identities=36% Similarity=0.557 Sum_probs=319.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC--C--ceeecccceeeCCCCCCcHHHHHHHcC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--G--FPVDLGASWLHGVCQENPLAPVISRLG 101 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (491)
...+||+|||||++||+||..|++.|++|+|+|+++++||+++|.... | +.+|+|++|+++. ..+++..+.+++|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~-~~npl~~la~~lg 236 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGI-HANPLGVLARQLS 236 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccc-ccchHHHHHHHhC
Confidence 356799999999999999999999999999999999999999998764 3 4899999999976 3566889999999
Q ss_pred CCeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHHccChhh
Q 011202 102 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPEL 178 (491)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 178 (491)
++..+.... ..++...+...+......+...+..++..+..+.. ...++.++.+++.........
T Consensus 237 l~~~~~~~~-----------~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~- 304 (738)
T PLN02529 237 IPLHKVRDN-----------CPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGV- 304 (738)
T ss_pred CCccccCCC-----------ceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhcc-
Confidence 976543221 12333444444433322222233333333332211 245678999988654321100
Q ss_pred hhhhhHHHHHHHHHHhhhhhhcCCccccchhccccc--ccccCCccccccchHHHHHHHhccCCeecCceeEEEEecCCc
Q 011202 179 RLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG 256 (491)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~~ 256 (491)
........++++....+....+...+.+++..|... ....+.+..+.+|++.++++|++++.|+++++|++|+..+++
T Consensus 305 ~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dG 384 (738)
T PLN02529 305 ARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDG 384 (738)
T ss_pred CCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCe
Confidence 011223345555554445555666677777666532 222345667889999999999999999999999999999888
Q ss_pred EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC-ccceeecCCC--
Q 011202 257 VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS-- 333 (491)
Q Consensus 257 v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~-- 333 (491)
|.|++ +++++.||+||+|+|+..++...+.|.|+||+...+++..+.+++..|+++.|+++||++. ...|.+....
T Consensus 385 VtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~ 463 (738)
T PLN02529 385 VEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK 463 (738)
T ss_pred EEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCC
Confidence 88875 4458999999999999999866678999999998999999999999999999999999753 3556553221
Q ss_pred -CcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEecccCCCCCCCcccc
Q 011202 334 -YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYS 408 (491)
Q Consensus 334 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~~~~w~~~~~~~g~~~ 408 (491)
.....+.+....++..+++++..+..+..+..++++++++.++++|+++++. .++|..+.+++|..++++.|+|+
T Consensus 464 ~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS 543 (738)
T PLN02529 464 RGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYS 543 (738)
T ss_pred CceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcc
Confidence 1122333443344557888898888888899999999999999999999952 34788899999999999999999
Q ss_pred cCCCCCChhhHHHhcCCc-CcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 409 YDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
+..++.....+..+..|+ ++|||||++++..|+|+||||+.||.+||++|++.+..
T Consensus 544 ~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 544 HVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred cCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 877776554456667774 89999999999989999999999999999999987654
No 3
>PLN03000 amine oxidase
Probab=100.00 E-value=1.2e-46 Score=384.59 Aligned_cols=426 Identities=35% Similarity=0.529 Sum_probs=319.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC----CceeecccceeeCCCCCCcHHHHHHHcCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF----GFPVDLGASWLHGVCQENPLAPVISRLGL 102 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (491)
...+|+|||||++||+||+.|.+.|++|+|+|+++++||++.|.... ++.+|+|++|+++. ..+.+..+++++|+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~-~~npl~~L~~qlgl 261 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGT-LGNPLGIIARQLGS 261 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCC-CccHHHHHHHHcCC
Confidence 56899999999999999999999999999999999999999998754 47899999999976 45678889999999
Q ss_pred CeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhh---hcCCCCCCHHHHHHHHHccChhhh
Q 011202 103 PLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---EEHDEDMSIQRAISIVFDRRPELR 179 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 179 (491)
........ ..++...+...++.....+...+..++..+.++. .....+.++.+++..+..... ..
T Consensus 262 ~l~~~~~~-----------~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g-~~ 329 (881)
T PLN03000 262 SLYKVRDK-----------CPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSG-ND 329 (881)
T ss_pred ceeecCCC-----------CeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHHHc-cc
Confidence 86543221 1223344555554433333333444444333322 223446677765432211000 00
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCccccchhccccc--ccccCCccccccchHHHHHHHhccCCeecCceeEEEEecCCcE
Q 011202 180 LEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 257 (491)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~~v 257 (491)
.......++.+.+..+....+.....+++..+... ....+.+..+.+|++.++++|++.+.|+++++|++|...+++|
T Consensus 330 ~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV 409 (881)
T PLN03000 330 VATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGV 409 (881)
T ss_pred CCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeE
Confidence 00111223333333334444455555555544321 1233456678899999999999999999999999999998889
Q ss_pred EEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC-ccceeecCCCC--
Q 011202 258 KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY-- 334 (491)
Q Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~~-- 334 (491)
.|++.+ +++.||+||+|+|+..++...+.|.|+||+...+++..+.++...||++.|+++||+.. ...|.+.++..
T Consensus 410 ~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~r 488 (881)
T PLN03000 410 KVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYR 488 (881)
T ss_pred EEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCC
Confidence 887654 48999999999999999866678999999999999999999999999999999999854 45666643321
Q ss_pred -cceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEecccCCCCCCCccccc
Q 011202 335 -GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSY 409 (491)
Q Consensus 335 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~~~~w~~~~~~~g~~~~ 409 (491)
...+|.+..+..+..+++++..++.+..+..++++|+++.++++|+++|+. .++|..+.+++|..++++.|+|++
T Consensus 489 g~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~ 568 (881)
T PLN03000 489 GEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSN 568 (881)
T ss_pred ceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccC
Confidence 123344444445677889999999999999999999999999999999962 357889999999999999999999
Q ss_pred CCCCCChhhHHHhcCCc--CcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Q 011202 410 DTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 466 (491)
Q Consensus 410 ~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~~~ 466 (491)
..+|+....+..+++|+ ++|||||++++..|+|+|+||+.||.+||.+|++.+....
T Consensus 569 ~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~ 627 (881)
T PLN03000 569 VAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARG 627 (881)
T ss_pred CCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88998877888889986 5999999999988999999999999999999999765443
No 4
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=1.1e-45 Score=378.22 Aligned_cols=429 Identities=34% Similarity=0.521 Sum_probs=318.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCc----eeecccceeeCCCCCCcHHHHHHHcC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF----PVDLGASWLHGVCQENPLAPVISRLG 101 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~----~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (491)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|. .+|+|++|+++. ..+.+..+++++|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~-~~npl~~l~~~lg 314 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI-NGNPLGVLARQLG 314 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCC-CccHHHHHHHHcC
Confidence 35689999999999999999999999999999999999999999877653 689999999876 3566889999999
Q ss_pred CCeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhh-----cCCCCCCHHHHHHHHHccCh
Q 011202 102 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE-----EHDEDMSIQRAISIVFDRRP 176 (491)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 176 (491)
++....... +.++...+..+...........+..++....++.. ....+.++.+++..+.....
T Consensus 315 l~~~~~~~~-----------~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~ 383 (808)
T PLN02328 315 LPLHKVRDI-----------CPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYK 383 (808)
T ss_pred CceEecCCC-----------ceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhc
Confidence 976543221 12223344444333332333334444444333222 12246788888754311100
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhcCCccccchhccccc--ccccCCccccccchHHHHHHHhccCCeecCceeEEEEecC
Q 011202 177 ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 254 (491)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~ 254 (491)
.........++++.+..+...++.....+++..+... ....+.+..+.+|++.|+++|++.+.|+++++|++|...+
T Consensus 384 -~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~ 462 (808)
T PLN02328 384 -VAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGV 462 (808)
T ss_pred -cCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcC
Confidence 0011112234444443334444455555565544321 1123446678899999999999999999999999999988
Q ss_pred CcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC-ccceeecCCC
Q 011202 255 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS 333 (491)
Q Consensus 255 ~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~ 333 (491)
++|.| +.+|+++.||+||+|+|+..++...+.|.|.||+...+++..+.|+..+|+++.|+++||+.. ...|.+..+.
T Consensus 463 dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~ 541 (808)
T PLN02328 463 DGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDP 541 (808)
T ss_pred CeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecC
Confidence 88877 457778999999999999998765667899999999999999999999999999999999853 4456654322
Q ss_pred Cc---ceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEecccCCCCCCCcc
Q 011202 334 YG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGS 406 (491)
Q Consensus 334 ~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~~~~w~~~~~~~g~ 406 (491)
.. ...+.+....++..+++.++.+..+..+..++++++++.++++|.++|+. .+.|..+.+++|..++++.|+
T Consensus 542 s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GS 621 (808)
T PLN02328 542 SMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGS 621 (808)
T ss_pred CCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCC
Confidence 11 12344443345667889999999899999999999999999999999952 357889999999999999999
Q ss_pred cccCCCCCChhhHHHhcCCc--CcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHHHhCC
Q 011202 407 YSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE 468 (491)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~~~~~ 468 (491)
|++..+|+....++.+..|+ ++|||||++++..++|+|+||+.||.+||++|++.+......
T Consensus 622 YS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~ 685 (808)
T PLN02328 622 YSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLC 685 (808)
T ss_pred CCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99888888766678888885 599999999998889999999999999999999987766443
No 5
>PLN02676 polyamine oxidase
Probab=100.00 E-value=6.8e-45 Score=363.44 Aligned_cols=422 Identities=30% Similarity=0.477 Sum_probs=302.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCcceeeecCCCCceeecccceeeCC--CCCCcHHHHHHHcC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV--CQENPLAPVISRLG 101 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lg 101 (491)
...++||+|||||++||+||+.|++.|. +|+|+|+++++||++.+....|+.+|.|++|++.. ...+.+.++++++|
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 3457899999999999999999999998 59999999999999999888899999999999752 34677899999999
Q ss_pred CCeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhh----cCCCCCCHHH--HHHHHHccC
Q 011202 102 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE----EHDEDMSIQR--AISIVFDRR 175 (491)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~ 175 (491)
+.......+.. ....+...+...+..........+..+......+.. ...++.++.+ ++.....
T Consensus 103 ~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-- 172 (487)
T PLN02676 103 LRTFYSDFDNL--------SSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFGQVP-- 172 (487)
T ss_pred CceeecCcccc--------ceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhCC--
Confidence 98654322110 011122233333333333333333333332222221 1234555533 2221110
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhcCCccccchhccccccc--ccCC-cccc--ccchHHHHHHHhcc-----------C
Q 011202 176 PELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGG-HGLM--VRGYLPVINTLAKG-----------L 239 (491)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~-~~~~--~~G~~~l~~~l~~g-----------v 239 (491)
..........+ . ....++.++...|+..+..... ..++ ..++ .+|++++++.|++. .
T Consensus 173 -----~~~~~~~~~~~-~-~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~ 245 (487)
T PLN02676 173 -----KTPLEMVIDYY-N-YDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDP 245 (487)
T ss_pred -----CCHHHHHHHHH-h-ccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCC
Confidence 00011111111 1 0122466667777655431111 1122 2333 57999999999863 3
Q ss_pred CeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCC
Q 011202 240 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 319 (491)
Q Consensus 240 ~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (491)
+|+++++|.+|+.++++|.|++.+|+++.||+||+|+|+..|+...+.|.|+||....+.+..+.++...|+++.|+++|
T Consensus 246 ~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~F 325 (487)
T PLN02676 246 RLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKF 325 (487)
T ss_pred ceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCC
Confidence 59999999999999899999999998999999999999999976567899999998888999999999999999999999
Q ss_pred CCCCc-cceeecCC-CC-cceeeeccc-ccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCC-CCCCCcEEEe
Q 011202 320 WPNVE-FLGVVSDT-SY-GCSYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLV 394 (491)
Q Consensus 320 ~~~~~-~~g~~~~~-~~-~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-~~~~~~~~~~ 394 (491)
|++.. .......+ .. ....+.... ..++..+++++..+..+..+..+++++.++.++++|+++|+ ...+|..+..
T Consensus 326 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~ 405 (487)
T PLN02676 326 WPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILV 405 (487)
T ss_pred CCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEe
Confidence 98632 11111111 10 001111111 13345677777777778888999999999999999999996 4557889999
Q ss_pred cccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHH
Q 011202 395 SHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 463 (491)
Q Consensus 395 ~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~ 463 (491)
++|..++++.|+|++..+|......+.+++|+++|||||+.++..|+|+||||+.||++||++|+..+.
T Consensus 406 ~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 406 PRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred cccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888887777788999999999999999988899999999999999999998753
No 6
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-46 Score=364.95 Aligned_cols=434 Identities=45% Similarity=0.689 Sum_probs=329.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCce-eecccceeeCCCCCCcHHHHHHHcCCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLP 103 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (491)
..++++|||||||+|||+||..|.+.|++|+|+|+.+++|||++|....+.. +|+|++++++.. .+++.-+.+++|++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~-~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVY-NNPLALLSKQLGLE 90 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcC-ccHHHHHHHHhCcc
Confidence 3467899999999999999999999999999999999999999998876665 999999999873 55889999999999
Q ss_pred eeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH------HHccChh
Q 011202 104 LYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI------VFDRRPE 177 (491)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 177 (491)
..+......++...+......+..... .....+......+.......... ....++.+.+.. ......+
T Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~d~~~~----~~~~~l~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~ 165 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGESDKVFDDFVE----QEFNRLLDDASNLEQRLDNEIIG-ISDDSFGEALEAFLSASRLMKTLLE 165 (501)
T ss_pred cceecccccccccCCcccccccccchh----hhhHHHHHHHhhhhhhhhhcccc-cccccHHHHHHhHHHHHHHHHhhHH
Confidence 877655554444333221111111111 11111111111111111111111 112233332222 1112222
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhcCCccccchhcccccccccC--CccccccchHHHHHHHhccCCeecCceeEEEEecCC
Q 011202 178 LRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYI 255 (491)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~ 255 (491)
....+.....+.|.+..+..+.....+..+...+........ .+..+.+|+..++.++++|+.|++++.|.+|.+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~ 245 (501)
T KOG0029|consen 166 LLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDD 245 (501)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecC
Confidence 233334555666666666666666666666555554333322 357889999999999999999999999999999766
Q ss_pred c-EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCC-CCCccceeecCCC
Q 011202 256 G-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTS 333 (491)
Q Consensus 256 ~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~g~~~~~~ 333 (491)
. +.+++.++..+.+|+||+|+|+..++.-.+.|.|+||....+++..+..+..+|+.+.|+..|| ++..+.|....+.
T Consensus 246 ~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~ 325 (501)
T KOG0029|consen 246 GAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETS 325 (501)
T ss_pred CceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccc
Confidence 6 4566666666999999999999999876788999999999999999999999999999999999 5667778777665
Q ss_pred Ccce--eeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCC--CCCCCcEEEecccCCCCCCCccccc
Q 011202 334 YGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSY 409 (491)
Q Consensus 334 ~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~ 409 (491)
..+. .|++..+..+...++.+..+..+..+..++++++++.+...|+++|+ ...+|.+..+.+|..+++..|.|++
T Consensus 326 ~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~ 405 (501)
T KOG0029|consen 326 VLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSY 405 (501)
T ss_pred cccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccc
Confidence 5555 56777777777788888888888889999999999999999999999 5678999999999999999999998
Q ss_pred CCCCCChhhHHHhcCCcCc-EEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 410 DTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 410 ~~~~~~~~~~~~~~~p~~~-l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
..++...+.++.++.|+.| +||||++++..+.|+|+||+.||.++|..|++.+..
T Consensus 406 ~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 406 VAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred cCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 8888877788999999988 999999999999999999999999999999998774
No 7
>PLN02976 amine oxidase
Probab=100.00 E-value=1.9e-44 Score=376.45 Aligned_cols=428 Identities=37% Similarity=0.634 Sum_probs=324.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCC-CCceeecccceeeCCCC-------CCcHHHHHH
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQ-------ENPLAPVIS 98 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~-------~~~~~~l~~ 98 (491)
..+||+|||||++||++|+.|.+.|++|+|||+++.+||++++... .++.+|.|++|+++... .+.+..+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4588999999999999999999999999999999999999999764 57899999999987532 234455788
Q ss_pred HcCCCeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHHccC
Q 011202 99 RLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRR 175 (491)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 175 (491)
++|+.......... .+....+..++......+...+..++........ ....++++.+++...+...
T Consensus 772 qlGl~l~~~~~~~~----------~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~ 841 (1713)
T PLN02976 772 QLGLELTVLNSDCP----------LYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRR 841 (1713)
T ss_pred hcCCccccccCCCc----------eeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhh
Confidence 89988644322111 1223456777777777777777777766543211 2234678888887533110
Q ss_pred h------h-------------h-------------------hhhhhHHHHHHHHHHhhhhhhcCCccccchhccccc---
Q 011202 176 P------E-------------L-------------------RLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--- 214 (491)
Q Consensus 176 ~------~-------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--- 214 (491)
. . + ....+...++++.+......++.++..+|+..|...
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y 921 (1713)
T PLN02976 842 RMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVY 921 (1713)
T ss_pred hccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhccccc
Confidence 0 0 0 000111122222222221223566777777665522
Q ss_pred ccccCCccccccchHHHHHHHhccCCeecCceeEEEEec----------CCcEEEEEcCCcEEEcCEEEEecchhhhccC
Q 011202 215 ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 284 (491)
Q Consensus 215 ~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~----------~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~ 284 (491)
....+....+.+|++.|+++|++++.|+++++|++|... +++|.|++.+|+++.||+||+|+|+..|+..
T Consensus 922 ~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 922 GGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred ccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 123445667899999999999999999999999999984 3568899999989999999999999998754
Q ss_pred cccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC-ccceeecCC---CCcceeeecccccCCceEEEEEeccchh
Q 011202 285 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDT---SYGCSYFLNLHKATGHCVLVYMPAGQLA 360 (491)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 360 (491)
.+.|.|+||.....++..+.++...|+++.|+++||++. .++|....+ ...+..+++...+.+.++|+.+..|..+
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aA 1081 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAA 1081 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhH
Confidence 568999999999999999999999999999999999863 455544321 1112233444445566788888888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCc-EEEeccccC
Q 011202 361 RDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATS 437 (491)
Q Consensus 361 ~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-l~~aG~~~~ 437 (491)
..+..++++++++.+++.|.++|+. .+.|..+.+++|..++|+.|+|++..+|.....+..+..|++| |||||++++
T Consensus 1082 reiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS 1161 (1713)
T PLN02976 1082 IDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATC 1161 (1713)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhh
Confidence 8888999999999999999999985 3578999999999999999999988888876677788999976 999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 438 MSYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 438 ~~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
..|+|+|+||+.||.+||++|+..+..
T Consensus 1162 ~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1162 KEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 989999999999999999999987654
No 8
>PLN02568 polyamine oxidase
Probab=100.00 E-value=6.6e-44 Score=358.26 Aligned_cols=432 Identities=31% Similarity=0.450 Sum_probs=309.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHc
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (491)
.+.+||+|||||++||+||+.|++.| ++|+|+|+++++||+++|....|+.+|.|++|+++.. .+.+.++++++
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~-~~~~~~l~~~~ 81 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIG-GSPVYKIAQEA 81 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCC-CCHHHHHHHHh
Confidence 45679999999999999999999887 8999999999999999999888999999999999763 67899999999
Q ss_pred CCCeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhh---------------------cCC
Q 011202 101 GLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---------------------EHD 159 (491)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 159 (491)
|+........ ..........++...+..++......+.+.+..++..+..... ...
T Consensus 82 g~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (539)
T PLN02568 82 GSLESDEPWE---CMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESG 158 (539)
T ss_pred CCccccCcce---ecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccC
Confidence 9863221000 0000011223455566677777777777777776655442210 011
Q ss_pred CCCCHHHHHHHHHccChh-h----hh---hhhHHHH-HHHHHHhhhhhh--cCCccc---cchhcccccccccCCccccc
Q 011202 160 EDMSIQRAISIVFDRRPE-L----RL---EGLAHKV-LQWYLCRMEGWF--AADAET---ISLKSWDKEELLPGGHGLMV 225 (491)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~----~~---~~~~~~~-~~~~~~~~~~~~--~~~~~~---~s~~~~~~~~~~~~~~~~~~ 225 (491)
.+.++.++++..++.... + .. .+...+. ....+..+..+. ...... +++..........+....+.
T Consensus 159 ~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~ 238 (539)
T PLN02568 159 GGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIA 238 (539)
T ss_pred CCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEEC
Confidence 234788887654432100 0 00 0001111 111111111111 122222 22222222222345567889
Q ss_pred cchHHHHHHHhccC---CeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCc----ccccCCCchHHHH
Q 011202 226 RGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKART----IKFEPRLPDWKEA 298 (491)
Q Consensus 226 ~G~~~l~~~l~~gv---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~----~~~~~~l~~~~~~ 298 (491)
+|++.|+++|++.+ +|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..++... +.|.|.||+...+
T Consensus 239 gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~ 318 (539)
T PLN02568 239 KGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTD 318 (539)
T ss_pred CcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHH
Confidence 99999999998866 4999999999999988899999999889999999999999987532 4689999999999
Q ss_pred HHhhcCCCcccEEEEEecCCCCCCC------ccceeecCCCC------cceeeec----cc-ccCCceEEEEEeccchhH
Q 011202 299 AIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVSDTSY------GCSYFLN----LH-KATGHCVLVYMPAGQLAR 361 (491)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~~~~------~~~g~~~~~~~------~~~~~~~----~~-~~~~~~~l~~~~~~~~~~ 361 (491)
++..+.++..+|+++.|+++||... .....+..... ...+|.. .. ...+.++|+.++.+..+.
T Consensus 319 Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~ 398 (539)
T PLN02568 319 AISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEAL 398 (539)
T ss_pred HHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHHH
Confidence 9999999999999999999988631 11122211110 0111110 11 123567889999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHhCCCC-----------------------CCCcEEEecccCCCCCCCcccccCCCCCChhh
Q 011202 362 DIEKMSDEAAANFAFTQLKKILPDA-----------------------SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 418 (491)
Q Consensus 362 ~~~~~~~~e~~~~~~~~L~~~~p~~-----------------------~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~ 418 (491)
.+..++++++++.+++.|.++|+.. ..|..+.+++|..++++.|+|++..+|.....
T Consensus 399 ~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~ 478 (539)
T PLN02568 399 ELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDD 478 (539)
T ss_pred HHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhH
Confidence 9999999999999999999999632 24788899999999999999998888887666
Q ss_pred HHHhcCCcC-------------cEEEeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 011202 419 YERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 419 ~~~~~~p~~-------------~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~ 461 (491)
...++.|++ +|||||++++..++|+|+||+.||++||++|++.
T Consensus 479 ~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~ 534 (539)
T PLN02568 479 LDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH 534 (539)
T ss_pred HHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 778888875 7999999999999999999999999999998874
No 9
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-41 Score=314.22 Aligned_cols=411 Identities=26% Similarity=0.360 Sum_probs=282.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (491)
.+++||+|||||++||+||+.|.|.|++|+|+|+++++|||+.+.+..+...|.|++++.+ .++.+..+.++.|++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv~~~ 82 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGVPLE 82 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCCCCC
Confidence 3678999999999999999999999999999999999999999988788899999999874 56778999999999865
Q ss_pred eccC--CCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHh--hhcC-------CCCCCHHHHHHHHHcc
Q 011202 106 RTSG--DNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKV--REEH-------DEDMSIQRAISIVFDR 174 (491)
Q Consensus 106 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~ 174 (491)
+... .+...+....... ....... ...+.-....+....... .... .+..++.+| .
T Consensus 83 ~fi~~g~~~~~~~~~~~~~------p~~~~~~-~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-----~- 149 (450)
T COG1231 83 PFIRDGDNVIGYVGSSKST------PKRSLTA-AADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-----K- 149 (450)
T ss_pred ceeccCccccccccccccc------chhccch-hhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-----h-
Confidence 4322 2211111111111 0000000 000000000010000000 0000 000111111 0
Q ss_pred ChhhhhhhhHHHHHHHHHHhhhh-hhc-CCccccch-------hccc---cccc--ccCCccccccchHHHHHHHhc--c
Q 011202 175 RPELRLEGLAHKVLQWYLCRMEG-WFA-ADAETISL-------KSWD---KEEL--LPGGHGLMVRGYLPVINTLAK--G 238 (491)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~s~-------~~~~---~~~~--~~~~~~~~~~G~~~l~~~l~~--g 238 (491)
.....++.. .+... .++ .+.....+ ..+. .... ...-...+.|||+.+.+++++ |
T Consensus 150 --~~~~~~~~~-------~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~ 220 (450)
T COG1231 150 --TSSLRGLSR-------DPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLG 220 (450)
T ss_pred --hcccccccc-------CccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhh
Confidence 000000000 00000 000 11111110 0000 0000 011122344999999999987 5
Q ss_pred CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCC
Q 011202 239 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV 318 (491)
Q Consensus 239 v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (491)
-.|+++++|.+|.+.+++|.|++.+.+++.+|+||+|+|+..+.+ +.|.|.+++.+.+.++.++|++.+|+.+.|+++
T Consensus 221 ~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rp 298 (450)
T COG1231 221 TRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRP 298 (450)
T ss_pred ceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCch
Confidence 589999999999999999999998845899999999999998764 578888999999999999999999999999999
Q ss_pred CCCCCc-cceeecCCCC-cceeeecccccCCceEEEE-EeccchhHHhhcCCHHHHHHHHHHHHHHhCCC-CCCCcEE-E
Q 011202 319 FWPNVE-FLGVVSDTSY-GCSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQY-L 393 (491)
Q Consensus 319 ~~~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~-~~~~~~~-~ 393 (491)
||++.+ +.|....+.. ...++.+....++..++.. +..+..+..|..+++++.++.++..+.++||+ ..++.+. .
T Consensus 299 FWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~ 378 (450)
T COG1231 299 FWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGA 378 (450)
T ss_pred hhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccce
Confidence 999887 6666544433 2233443322356677765 56688888999999999999999999999994 4566666 7
Q ss_pred ecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 394 VSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 394 ~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
..+|..++++.|++....+++..+.+|.+..|.++||+||+..++.++||+|||++||.+||.+|...+
T Consensus 379 ~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 379 SVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred eeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence 899999999999888788999989999999999999999966666689999999999999999987754
No 10
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=309.27 Aligned_cols=424 Identities=30% Similarity=0.418 Sum_probs=307.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcC-CCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~ 104 (491)
.+.+|+|||||+|||+||..|-+.|. +|+|+|+.+++|||++|.+..+-.+|+|++|+|+ ..++.++++.++.| +..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG-~~gNpVY~la~~~g~~~~ 98 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG-EEGNPVYELAKEYGDLKL 98 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC-CCCChHHHHHHHhCccce
Confidence 45689999999999999999998775 7999999999999999999888899999999998 36889999999988 332
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccCh---h--hh
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP---E--LR 179 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 179 (491)
....... .........++..++......+.+....+......... ..+..|++.++..-+.... + -.
T Consensus 99 ~~~tg~~-------~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~SvG~~ln~~~~~~~~~~e~~~~ 170 (498)
T KOG0685|consen 99 LEVTGPA-------YVDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEI-AHDEGSVGEYLNSEFWDELRGPENPEI 170 (498)
T ss_pred eccCCcc-------ccceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccc-cCccccHHHHHHHHHHHHhccccccch
Confidence 2211111 01222344556667776666665554433333222111 1344578887765322211 1 01
Q ss_pred hhhhHHHHHHHHHHhhhhhh-cCCccccchhcccccccccC--CccccccchHHHHHHHhcc---C--------CeecCc
Q 011202 180 LEGLAHKVLQWYLCRMEGWF-AADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKG---L--------DIRLGH 245 (491)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~g---v--------~i~~~~ 245 (491)
...+..++++-++...+... +.+.+.+++..+.......+ ..-....|+..+++.|.+. . ++++++
T Consensus 171 ~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~ 250 (498)
T KOG0685|consen 171 DKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNT 250 (498)
T ss_pred hhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccc
Confidence 23344445555544444433 44677888888777776666 5566778999999988652 1 366679
Q ss_pred eeEEEEecC-CcEEEEEcCCcEEEcCEEEEecchhhhccCc-ccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC
Q 011202 246 RVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVLKART-IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV 323 (491)
Q Consensus 246 ~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 323 (491)
+|.+|..++ +.+.|...||+.+.||+||+|+++..|+.-. .-|.|+||....++++.+.++..+|+++.|++|||++.
T Consensus 251 rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 251 RVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred cceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence 999999875 5699999999999999999999999887532 23789999999999999999999999999999999974
Q ss_pred c-cceeecC-CC----------Cc--ceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCC--CCC
Q 011202 324 E-FLGVVSD-TS----------YG--CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DAS 387 (491)
Q Consensus 324 ~-~~g~~~~-~~----------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p--~~~ 387 (491)
- .+..+.. +. +. ...|... .....+|+..+.|.-+...+++++||+++.+..-|+++++ .++
T Consensus 331 ~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v--~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP 408 (498)
T KOG0685|consen 331 WNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPV--SWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIP 408 (498)
T ss_pred CceeEEEEecCcHHHHhhhhHHHHhhceEEEEc--CcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 1 1112211 11 00 0111111 1223678888888888889999999999999999999995 577
Q ss_pred CCcEEEecccCCCCCCCcccccCCCCCChhhH-------HH-hcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 388 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLY-------ER-LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 388 ~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~-------~~-~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
+|..+..+.|..++++.|+|+|..++...... |. ..++.+.+.|||++++..++.++.||+.||.+.|+.++
T Consensus 409 ~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~ 488 (498)
T KOG0685|consen 409 KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLL 488 (498)
T ss_pred CchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHH
Confidence 88999999999999999999988776542111 11 11234689999999999889999999999999999887
Q ss_pred HH
Q 011202 460 MR 461 (491)
Q Consensus 460 ~~ 461 (491)
+.
T Consensus 489 ~~ 490 (498)
T KOG0685|consen 489 EH 490 (498)
T ss_pred HH
Confidence 73
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=5.3e-38 Score=317.00 Aligned_cols=401 Identities=21% Similarity=0.293 Sum_probs=270.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (491)
++||+|||||++||+||+.|+++ |++|+|+|+++++||+++|...+|+.+|.|+|+++.. +..+.++++++|+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~--~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLER--KKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccC--ChHHHHHHHHcCCC
Confidence 46999999999999999999999 9999999999999999999988999999999999854 45589999999986
Q ss_pred eeecc--CCCcccccCCCcceeeecCCCCccChHHHHHHHHH----HHHHHHHHHHhh-hcCCCCCCHHHHHHHHHccCh
Q 011202 104 LYRTS--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEA----FESILKETDKVR-EEHDEDMSIQRAISIVFDRRP 176 (491)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (491)
..... ....+++... .....+|......+... ..++......+. .....+.++.+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~--------g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~----- 146 (462)
T TIGR00562 80 HVLVSDATGQRYVLVNR--------GKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRR----- 146 (462)
T ss_pred cccccCCCCceEEEECC--------CceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHh-----
Confidence 43221 1111111110 00011121111111100 001111111111 1123468899988644
Q ss_pred hhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccc-------------------c--------ccc---cCC-cccc
Q 011202 177 ELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK-------------------E--------ELL---PGG-HGLM 224 (491)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-------------------~--------~~~---~~~-~~~~ 224 (491)
+.+.+.+.++.++ .+.++.+++.+++..... . ..+ .+. ...+
T Consensus 147 ------~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (462)
T TIGR00562 147 ------FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTL 220 (462)
T ss_pred ------cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEec
Confidence 3344555555553 346666666665542110 0 000 011 3458
Q ss_pred ccchHHHHHHHhcc---CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHh
Q 011202 225 VRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 301 (491)
Q Consensus 225 ~~G~~~l~~~l~~g---v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~ 301 (491)
.+|++.++++|++. ++|+++++|++|+.++++|.|++++|+++.||+||+|+|++.+..++ |.+++...+.+.
T Consensus 221 ~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll----~~~~~~~~~~l~ 296 (462)
T TIGR00562 221 ATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLL----SELSNSASSHLD 296 (462)
T ss_pred chhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHh----cccCHHHHHHHh
Confidence 89999999999763 57999999999999888898988888889999999999999876542 446667778889
Q ss_pred hcCCCcccEEEEEecCCCCCCC-ccceeecCCCC---c-ceeeec----ccccCCceEEEEEeccchhHHhhcCCHHHHH
Q 011202 302 DLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY---G-CSYFLN----LHKATGHCVLVYMPAGQLARDIEKMSDEAAA 372 (491)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~~---~-~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~ 372 (491)
++.+.+..++.+.|++++|+.. ...+++.+... . ..++.+ ...+.+..+++++..+.....+.+++++|++
T Consensus 297 ~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~ 376 (462)
T TIGR00562 297 KIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEII 376 (462)
T ss_pred cCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHH
Confidence 9999999999999998887642 23355544321 1 122221 1234566677777777666778888999999
Q ss_pred HHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCC---hhhHHHhcCCcCcEEEeccccCCCCCccchHHHH
Q 011202 373 NFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFS 449 (491)
Q Consensus 373 ~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~ 449 (491)
+.++++|.++++...+|....+++|... ...+ .+++. ....+.+..+.+||++||+++. +.++++|+.
T Consensus 377 ~~v~~~L~~~~gi~~~p~~~~v~rw~~a---~P~~---~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~---g~~i~~~i~ 447 (462)
T TIGR00562 377 NIVLRDLKKVLNINNEPEMLCVTRWHRA---IPQY---HVGHDQRLKEARELLESAYPGVFLTGNSFE---GVGIPDCID 447 (462)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeEcccc---CCCC---CCChHHHHHHHHHHHHhhCCCEEEeccccC---CCcHHHHHH
Confidence 9999999999975445788889999742 2222 23331 1222223345579999999973 349999999
Q ss_pred HHHHHHHHHHHHH
Q 011202 450 TGLMAAEDCRMRV 462 (491)
Q Consensus 450 sg~~aA~~i~~~l 462 (491)
||.++|+.+++.+
T Consensus 448 sg~~~a~~~~~~~ 460 (462)
T TIGR00562 448 QGKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.9e-37 Score=312.36 Aligned_cols=405 Identities=16% Similarity=0.230 Sum_probs=263.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (491)
+++|+|||||++||+||+.|+++ |++|+|+|+++++||+++|...+|+.+|.|+|+++. .+..+.+++++||
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~--~~~~~~~l~~~lg 78 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA--RNEHVMPLVKDLN 78 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc--CCHHHHHHHHHcC
Confidence 35799999999999999999986 379999999999999999999899999999999874 3466899999999
Q ss_pred CCeeeccC--CCcccccCCCcceeeecCCCCccChHHHHHHH-------HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 011202 102 LPLYRTSG--DNSVLYDHDLESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVREEHDEDMSIQRAISIVF 172 (491)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (491)
++...... ...+++..+. ...+.......+|......+. ..+. .............++.|+.+|+.+.
T Consensus 79 l~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sv~~~l~~~- 155 (463)
T PRK12416 79 LEEEMVYNETGISYIYSDNT-LHPIPSDTIFGIPMSVESLFSSTLVSTKGKIV-ALKDFITKNKEFTKDTSLALFLESF- 155 (463)
T ss_pred CccceecCCCCceEEEECCe-EEECCCCCeecCCCChHHhhcCCcCCHHHHHH-hhhhhccCCCCCCCCCCHHHHHHHh-
Confidence 87433211 1222221110 000000000011111111111 0111 1111111111223578999987543
Q ss_pred ccChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhccccc---------cc------------cc--CCccccccch
Q 011202 173 DRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------EL------------LP--GGHGLMVRGY 228 (491)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------~~------------~~--~~~~~~~~G~ 228 (491)
+.+++.+.++.++ .+.++.+++.++....... .+ .. ..+.++.+|+
T Consensus 156 ----------~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~ 225 (463)
T PRK12416 156 ----------LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL 225 (463)
T ss_pred ----------cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH
Confidence 4445555556654 3567777777765321100 00 01 1244789999
Q ss_pred HHHHHHHhccC---CeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCC
Q 011202 229 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 305 (491)
Q Consensus 229 ~~l~~~l~~gv---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 305 (491)
++++++|++.+ +|+++++|++|+.+++++.|.+.+|+++.||+||+|+|++.+..++. .|.+ ...+.++.+
T Consensus 226 ~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~--~~~l----~~~~~~~~~ 299 (463)
T PRK12416 226 STIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQ--SNEL----NEQFHTFKN 299 (463)
T ss_pred HHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcC--Ccch----hHHHhcCCC
Confidence 99999998744 69999999999998888988888888899999999999988765432 3333 345677788
Q ss_pred CcccEEEEEecCCCCC-CCccceeecCCCCcc----eeeecc---cccCCceEEEE-Eec--cchhHHhhcCCHHHHHHH
Q 011202 306 GIENKIIMHFDKVFWP-NVEFLGVVSDTSYGC----SYFLNL---HKATGHCVLVY-MPA--GQLARDIEKMSDEAAANF 374 (491)
Q Consensus 306 ~~~~~v~~~~~~~~~~-~~~~~g~~~~~~~~~----~~~~~~---~~~~~~~~l~~-~~~--~~~~~~~~~~~~~e~~~~ 374 (491)
.+..++++.|+.+.|. +....|++.++.... ..+.+. ..+++..+++. +.. +...+.+..++++|+++.
T Consensus 300 ~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~ 379 (463)
T PRK12416 300 SSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRV 379 (463)
T ss_pred CceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHH
Confidence 8888999999976553 112346665443221 111111 01233444444 332 345677888999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCC---hhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHH
Q 011202 375 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTG 451 (491)
Q Consensus 375 ~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg 451 (491)
++++|+++++...+|....+++|..... .| .+++. ....+.+..+.+|||+||+++. +.++++|+.||
T Consensus 380 ~~~~L~~~lG~~~~p~~~~v~~W~~a~P---~y---~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~---g~~i~~ai~sg 450 (463)
T PRK12416 380 ALYDIEKSLGIKGEPEVVEVTNWKDLMP---KY---HLEHNQAVQSLQEKMMNLYPNIYLAGASYY---GVGIGACIGNG 450 (463)
T ss_pred HHHHHHHHhCCCCCceEEEEEEccccCC---Cc---CcCHHHHHHHHHHHHHhhCCCeEEeccccc---cccHHHHHHHH
Confidence 9999999998666788889999975211 11 22221 1222344456689999999974 34799999999
Q ss_pred HHHHHHHHHHH
Q 011202 452 LMAAEDCRMRV 462 (491)
Q Consensus 452 ~~aA~~i~~~l 462 (491)
++||++|++.+
T Consensus 451 ~~aA~~i~~~~ 461 (463)
T PRK12416 451 KNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1.6e-36 Score=305.73 Aligned_cols=402 Identities=21% Similarity=0.283 Sum_probs=256.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeee
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (491)
++|+|||||++||+||+.|++.| ++|+|+|+++++||+++|...+|+.+|.|+|+++.. ...+.++++++|+....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~~ 78 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLAR--KPSAPALVKELGLEDEL 78 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCC--cHHHHHHHHHcCCccce
Confidence 47999999999999999999988 899999999999999999999999999999988743 45589999999987432
Q ss_pred ccC--CCcccccCCCcceeeecCCCCccChHHHHHHH----HHHHHHH--HHHHHhhhcCCCCCCHHHHHHHHHccChhh
Q 011202 107 TSG--DNSVLYDHDLESYALFDMDGNQVPQELVTKVG----EAFESIL--KETDKVREEHDEDMSIQRAISIVFDRRPEL 178 (491)
Q Consensus 107 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (491)
... ...+++.... ...+........+......+. ....++. ...........++.++.+|+.+.
T Consensus 79 ~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~------- 150 (451)
T PRK11883 79 VANTTGQSYIYVNGK-LHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRR------- 150 (451)
T ss_pred ecCCCCcceEEECCe-EEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHh-------
Confidence 211 1122221110 000000000011111111100 0000000 00000011224567899987543
Q ss_pred hhhhhHHHHHHHHHHhhh-hhhcCCccccchhcccc-----------------ccc------ccCCccccccchHHHHHH
Q 011202 179 RLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDK-----------------EEL------LPGGHGLMVRGYLPVINT 234 (491)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~-----------------~~~------~~~~~~~~~~G~~~l~~~ 234 (491)
+++.+.+.++.++. +.++.+++.+++..... ... ....+.++.+|++.++++
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~ 226 (451)
T PRK11883 151 ----FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEA 226 (451)
T ss_pred ----ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHH
Confidence 44556666666643 56677777776543210 000 011235789999999999
Q ss_pred HhccC---CeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEE
Q 011202 235 LAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKI 311 (491)
Q Consensus 235 l~~gv---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 311 (491)
|.+.+ +|+++++|++|+.+++++.|.+++|+++.||+||+|+|+..+..++. ++...+.+..+.+.+..++
T Consensus 227 l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~------~~~~~~~~~~~~~~~~~~v 300 (451)
T PRK11883 227 LEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFV------APPAFALFKTIPSTSVATV 300 (451)
T ss_pred HHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhcc------ChhHHHHHhCCCCCceEEE
Confidence 98744 59999999999998888888888998999999999999998876522 1234567788899999999
Q ss_pred EEEecCCCCCCCccceeecCCC--C-ccee-eec----ccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhC
Q 011202 312 IMHFDKVFWPNVEFLGVVSDTS--Y-GCSY-FLN----LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 383 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~--~-~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~ 383 (491)
++.|+.+++......+++.... . ...+ +.+ ...+.+..++..+...........++++++++.++++|++++
T Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 380 (451)
T PRK11883 301 ALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVM 380 (451)
T ss_pred EEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHh
Confidence 9999988632223334433211 1 1122 222 112334444444333322333567789999999999999999
Q ss_pred CCCCCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCC---cCcEEEeccccCCCCCccchHHHHHHHHHHHHHHH
Q 011202 384 PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 384 p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p---~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~ 460 (491)
+...++....+++|... +....++. ....+.++.+ ++|||+||+++. ++++++|+.||+.+|++|+.
T Consensus 381 g~~~~~~~~~~~rw~~a------~p~~~~~~-~~~~~~l~~~l~~~~~l~~aG~~~~---g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 381 GITGDPEFTIVQRWKEA------MPQYGVGH-IERVAELRAGLPHYPGLYVAGASFE---GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCCCceEEEEeecCcc------CCCCCccH-HHHHHHHHHhhhhCCCEEEECcccC---CccHHHHHHHHHHHHHHHHh
Confidence 75556778889999753 21112333 2222222222 579999999974 45899999999999998864
No 14
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=9.3e-37 Score=306.15 Aligned_cols=401 Identities=20% Similarity=0.226 Sum_probs=253.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeee--c
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR--T 107 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~--~ 107 (491)
+|+|||||++||+||++|+++|++|+|+|+++++||++.|...+|+.+|.|+|++.. .+..+.++++++|+.... .
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceeec
Confidence 599999999999999999999999999999999999999999899999999999874 357789999999985321 1
Q ss_pred cCCCcccccCCCcceeeecCCC---CccChHHHHHHHHHHHHHHHHHHH-hhhcCCCCCCHHHHHHHHHccChhhhhhhh
Q 011202 108 SGDNSVLYDHDLESYALFDMDG---NQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQRAISIVFDRRPELRLEGL 183 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (491)
.....+.+.+.. +.+ .... ..........+......+ .... ......++.++.+|+... +
T Consensus 79 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~l~~~-----------~ 142 (434)
T PRK07233 79 ETKTGYYVDGKL--YPL-GTPLELLRFPHLSLIDKFRLGLLTL--LARRIKDWRALDKVPAEEWLRRW-----------S 142 (434)
T ss_pred cCceEEEECCeE--ecC-CCHHHHHcCCCCCHHHHHHhHHHHH--hhhhcccccccccccHHHHHHHh-----------c
Confidence 111111111110 000 0000 000001111111111100 0110 011233567888887543 2
Q ss_pred HHHHHHHHHHhh-hhhhcCCccccchhcccc---cc-cc-----cCCccccccchHHHHHHHhc-----cCCeecCceeE
Q 011202 184 AHKVLQWYLCRM-EGWFAADAETISLKSWDK---EE-LL-----PGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVT 248 (491)
Q Consensus 184 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---~~-~~-----~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~ 248 (491)
..+..+.++.++ ...++.+++.+++..+.. .. .. .....++.+|++.++++|.+ |++|+++++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~ 222 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVT 222 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCee
Confidence 233444455543 456777788877654321 00 00 12356889999999998864 77999999999
Q ss_pred EEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCcccee
Q 011202 249 KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGV 328 (491)
Q Consensus 249 ~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 328 (491)
+|+.+++++.+...+++++.+|+||+|+|+..+..++ +.+++...+.+..+.+.+..++++.++++.++. .+. .
T Consensus 223 ~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-~ 296 (434)
T PRK07233 223 SVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLARLRRIDYQGVVCMVLKLRRPLTDY-YWL-N 296 (434)
T ss_pred EEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhhhcccCccceEEEEEEecCCCCCC-cee-e
Confidence 9998888776555677789999999999998876543 345555566777888888888999999875331 111 1
Q ss_pred ecCC-CCcc-eeee-cc---cccCCceEEE--EEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEecccC
Q 011202 329 VSDT-SYGC-SYFL-NL---HKATGHCVLV--YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWG 398 (491)
Q Consensus 329 ~~~~-~~~~-~~~~-~~---~~~~~~~~l~--~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~ 398 (491)
...+ .... .+.. +. ..+++.+.++ ++..+. ..+..++++++++.++++|++++|.+.. +....+.+|.
T Consensus 297 ~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~ 374 (434)
T PRK07233 297 INDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD--HPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAP 374 (434)
T ss_pred ecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC--ChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEec
Confidence 1111 1111 1111 11 1124454432 233322 2355778999999999999999997532 3444444443
Q ss_pred CCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHH
Q 011202 399 TDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 463 (491)
Q Consensus 399 ~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~ 463 (491)
+..+.+ .++ .....+.+.+|++|||+|||.+...++++|++|+.||.+||++|+..++
T Consensus 375 ---~a~~~~---~~g-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 375 ---YAQPIY---EPG-YLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred ---cccccc---cCc-hhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 333322 233 2334456678889999999954333456999999999999999988764
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=2.5e-36 Score=307.10 Aligned_cols=401 Identities=21% Similarity=0.271 Sum_probs=260.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
..++||+|||||++||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|++... +..+..++++ |+..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~--~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPS--DPELTSAVDS-GLRD 86 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccC--cHHHHHHHHc-CChh
Confidence 4567999999999999999999999 9999999999999999999999999999999998732 3445666666 6652
Q ss_pred eec--cCCCcccccCCCcceeeecCCCCccChHHHHHH-------HHHHHHHHHHHHHh--hhcCCCCCCHHHHHHHHHc
Q 011202 105 YRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTKV-------GEAFESILKETDKV--REEHDEDMSIQRAISIVFD 173 (491)
Q Consensus 105 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 173 (491)
... ..... .+.+.......+|....... ...+..... .... .....++.++.+|+..
T Consensus 87 ~~~~~~~~~~--------~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sv~~~l~~--- 154 (496)
T PLN02576 87 DLVFPDPQAP--------RYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLG-AFGWKRPPPPGREESVGEFVRR--- 154 (496)
T ss_pred heecCCCCce--------EEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHH-HhhccCCCCCCCCCcHHHHHHH---
Confidence 211 11110 01111110011111111100 011110100 0110 1122457899998754
Q ss_pred cChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhccccc-----------------cc-------------------
Q 011202 174 RRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-----------------EL------------------- 216 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~------------------- 216 (491)
.+++++.+.++.++ .+.++.+++.+|+...... ..
T Consensus 155 --------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 226 (496)
T PLN02576 155 --------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKP 226 (496)
T ss_pred --------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccc
Confidence 35556666666664 4577777877766532100 00
Q ss_pred ccCCccccccchHHHHHHHhccC---CeecCceeEEEEecCCc-EEEEEc--CCc-EEEcCEEEEecchhhhccCccccc
Q 011202 217 LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIG-VKVTVE--GGK-TFVADAVVVAVPLGVLKARTIKFE 289 (491)
Q Consensus 217 ~~~~~~~~~~G~~~l~~~l~~gv---~i~~~~~V~~I~~~~~~-v~v~~~--~g~-~~~ad~VI~a~p~~~l~~~~~~~~ 289 (491)
.......+.+|++.|+++|++.+ +|+++++|++|+..+++ |.|++. +|+ ++.||+||+|+|+..+..++..
T Consensus 227 ~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-- 304 (496)
T PLN02576 227 KGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-- 304 (496)
T ss_pred cCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcc--
Confidence 00112467899999999998744 59999999999998776 665543 453 6999999999999988765432
Q ss_pred CCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC-------ccceeecCCCCc---c-eeeecc----cccCCceEEEEE
Q 011202 290 PRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDTSYG---C-SYFLNL----HKATGHCVLVYM 354 (491)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~g~~~~~~~~---~-~~~~~~----~~~~~~~~l~~~ 354 (491)
+++...+.+.++.+.+..++.+.|++++|... ...+.+.+.... . ..+.+. ..+++...++.+
T Consensus 305 --~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~ 382 (496)
T PLN02576 305 --KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNY 382 (496)
T ss_pred --cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEE
Confidence 34556778888999999999999999888642 122333322111 1 122111 123455566777
Q ss_pred eccchhHHhhcCCHHHHHHHHHHHHHHhCCCCC--CCcEEEecccCCCCCCCcccccCCCCCChhhHHHhc---CCc--C
Q 011202 355 PAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR---IPV--D 427 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~--~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~---~p~--~ 427 (491)
..+...+.+.+++++++++.+.++|.++++... .|....+++|... ...| .+|+. ...+.+. .+. +
T Consensus 383 ~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a---~P~~---~~g~~-~~~~~~~~~l~~~~~~ 455 (496)
T PLN02576 383 IGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKA---IPQY---LLGHL-DVLEAAEKMEKDLGLP 455 (496)
T ss_pred ECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcc---cCCC---CcCHH-HHHHHHHHHHHhcCCC
Confidence 777777778889999999999999999997432 5666678889742 1112 22331 2222222 223 6
Q ss_pred cEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHH
Q 011202 428 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 463 (491)
Q Consensus 428 ~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~ 463 (491)
|||+||+++. +.++++|+.||.++|++|++.+.
T Consensus 456 ~l~~aG~~~~---g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 456 GLFLGGNYRG---GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CEEEeccccC---CccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999985 34899999999999999988643
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=4.1e-35 Score=294.57 Aligned_cols=405 Identities=20% Similarity=0.271 Sum_probs=252.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeec-CCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeecc
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (491)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|. ..+|+.+|.|+|++... +..+.++++++|+......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~~~~ 78 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNMLQLLKELNIEDRLQW 78 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccC--CchHHHHHHHcCCccceee
Confidence 58999999999999999999999999999999999999996 45789999999998843 4678999999998643221
Q ss_pred CCCcccccC--CCcceeeecCCCCccChHHHHH-H--------HHHHHHHHHHHHHh-h-----hcCCCCCCHHHHHHHH
Q 011202 109 GDNSVLYDH--DLESYALFDMDGNQVPQELVTK-V--------GEAFESILKETDKV-R-----EEHDEDMSIQRAISIV 171 (491)
Q Consensus 109 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 171 (491)
......+.. .......+.....+.+...... + .+.+ ++....... . ....++.++.+|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~- 156 (453)
T TIGR02731 79 KSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKI-KFAIGLLPAIVRGQKYVEEQDKYTVTEWLRK- 156 (453)
T ss_pred cCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHH-HHHHHhHHHHhcCccchhhhccCCHHHHHHH-
Confidence 111111110 0000000000000011111000 0 0000 011111110 0 012357888888743
Q ss_pred HccChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccchhcccccc--ccc--CCc--cccccc-----hHHHHHHHhc-c
Q 011202 172 FDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKEE--LLP--GGH--GLMVRG-----YLPVINTLAK-G 238 (491)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~--~~~--~~~--~~~~~G-----~~~l~~~l~~-g 238 (491)
.++++.+.+.++.++. ..++.+++.+|+..+.... ... .+. .+..++ ++.+.+.+.+ |
T Consensus 157 ---------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g 227 (453)
T TIGR02731 157 ---------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRG 227 (453)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcC
Confidence 3455555555555544 4556677777765433110 011 111 112222 3555555543 8
Q ss_pred CCeecCceeEEEEecCCc-E-EEEEcCCc-----EEEcCEEEEecchhhhccCcccccCCCc-hHHHHHHhhcCCCcccE
Q 011202 239 LDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DWKEAAIDDLGVGIENK 310 (491)
Q Consensus 239 v~i~~~~~V~~I~~~~~~-v-~v~~~~g~-----~~~ad~VI~a~p~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 310 (491)
++|+++++|++|+.++++ + .|.+.+|+ ++.+|.||+|+|++.+..++.. ..+ ....+.+..+++.+..+
T Consensus 228 ~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~---~~~~~~~~~~~~~~~~~~~~~ 304 (453)
T TIGR02731 228 GEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQ---PWKQMPFFQKLNGLEGVPVIN 304 (453)
T ss_pred CEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCch---hhhcCHHHHHhhcCCCCcEEE
Confidence 899999999999865443 4 56676665 7899999999999887654321 111 23445566677788899
Q ss_pred EEEEecCCCCCCCccceeecCCCC-cceeee-c----ccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCC
Q 011202 311 IIMHFDKVFWPNVEFLGVVSDTSY-GCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP 384 (491)
Q Consensus 311 v~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p 384 (491)
+++.|++++|... +++..... ....+. + ...+++..++.++. + ....+..++++|+++.++++|++++|
T Consensus 305 v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~ee~~~~v~~~L~~~~~ 379 (453)
T TIGR02731 305 VHIWFDRKLTTVD---HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVF-A-PAADWIGRSDEEIIDATMAELAKLFP 379 (453)
T ss_pred EEEEEccccCCCC---ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEe-c-ChhhhhcCCHHHHHHHHHHHHHHhCC
Confidence 9999999987543 21111111 110000 0 01123343333333 2 24567889999999999999999998
Q ss_pred CC---CCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 385 DA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 385 ~~---~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
.. ..+.++..+.|..++++. +. ..+|. ....|.+++|++|||+||++++..|+|+||||+.||.+||++|+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 380 NHIKADSPAKILKYKVVKTPRSV--YK-TTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred cccCCCCCceEEEEEEEECCCce--ec-cCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 63 146667777888888773 22 23553 35667889999999999999999899999999999999999863
No 17
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=1.4e-36 Score=305.98 Aligned_cols=407 Identities=31% Similarity=0.442 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC--CceeecccceeeCCCCCCcHHHHHHHcCCC--eeeccCCCcc
Q 011202 38 MAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--GFPVDLGASWLHGVCQENPLAPVISRLGLP--LYRTSGDNSV 113 (491)
Q Consensus 38 isGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~ 113 (491)
||||+||++|+++|++|+|||+++++|||++|.+.+ |+.+|.|+++++.. +..+..+++++++. ..........
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 78 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGM--YPNLLNLIDELGLELSLETFPFPQIP 78 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETT--SHHHHHHHHHHTHHTTEEEEEESSEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCccccccc--chhhHHHHHHhhhcccccccccccce
Confidence 699999999999999999999999999999998888 89999999999843 34488999998874 2211111110
Q ss_pred cccCCCcceeeecCCCCccChHH--------HHHHH---HHHHHHHHHHHHhhhcCC------CCCCHHHHHHHHHccCh
Q 011202 114 LYDHDLESYALFDMDGNQVPQEL--------VTKVG---EAFESILKETDKVREEHD------EDMSIQRAISIVFDRRP 176 (491)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 176 (491)
.............. ....+... ..... .................. ...++.+++
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 149 (450)
T PF01593_consen 79 FVYWPFGDGRPPWP-PSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFL-------- 149 (450)
T ss_dssp EEEEEEEEEEEEEE-ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred eeeccccccccccc-cccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhh--------
Confidence 00000000000000 00000000 00000 000001110000000000 000111110
Q ss_pred hhhhhhhHHHHH----HHHHHhhhhhhcCCcccc----chhcccc---c-ccccCCccccccchHHHHHHHhc--cCCee
Q 011202 177 ELRLEGLAHKVL----QWYLCRMEGWFAADAETI----SLKSWDK---E-ELLPGGHGLMVRGYLPVINTLAK--GLDIR 242 (491)
Q Consensus 177 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----s~~~~~~---~-~~~~~~~~~~~~G~~~l~~~l~~--gv~i~ 242 (491)
....+..... .................. ....+.. . ....++.....+++..+...+.+ |.+|+
T Consensus 150 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i~ 227 (450)
T PF01593_consen 150 --DSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEIR 227 (450)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGEE
T ss_pred --hhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCceee
Confidence 1111111111 111111111111111111 0111100 0 11222323345566655555554 67999
Q ss_pred cCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCC
Q 011202 243 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN 322 (491)
Q Consensus 243 ~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 322 (491)
++++|++|+.+++++.|++.+|+++.||+||+|+|+..+.. ..+.|.++......+..+++.+..++++.|+.++|+.
T Consensus 228 l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~ 305 (450)
T PF01593_consen 228 LNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPP 305 (450)
T ss_dssp SSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGS
T ss_pred cCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeecccccc
Confidence 99999999999999999999999999999999999999865 4577888887888889999999999999999999987
Q ss_pred C-ccceeecCCC-Cccee-eeccccc--CCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEec
Q 011202 323 V-EFLGVVSDTS-YGCSY-FLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVS 395 (491)
Q Consensus 323 ~-~~~g~~~~~~-~~~~~-~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~ 395 (491)
. ...+.+..+. ....+ +.....+ .+...+..++.+.....+..++++++++.++++|++++|. .++|.++.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 385 (450)
T PF01593_consen 306 DIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVT 385 (450)
T ss_dssp TTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEE
T ss_pred cccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccc
Confidence 6 4666665544 12222 2222222 2567778888777778899999999999999999999994 5567788899
Q ss_pred ccCCCCCCCcccccCCCCCChhhHHHhcCCc-CcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 396 HWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 396 ~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
+|..+++..+.+.+..++......+.+++|+ +|||||||++++.++|+++||+.||++||++|+
T Consensus 386 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 386 RWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp ECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999888887766666545778899999 699999999998777899999999999999885
No 18
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-35 Score=283.75 Aligned_cols=398 Identities=23% Similarity=0.296 Sum_probs=274.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeee
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (491)
+.|+|||||++||+|||+|+|.+ .+|+|||+.+++||.++|...+|+.+|.|+|.|... ...+.+++++||++...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~--~~~~l~li~eLGled~l 78 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR--KEEILDLIKELGLEDKL 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc--hHHHHHHHHHhCcHHhh
Confidence 46999999999999999999999 899999999999999999999999999999988744 37789999999997433
Q ss_pred c--cCCCc-ccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHH-HHHhhhcCCCCCCHHHHHHHHHccChhhhhhh
Q 011202 107 T--SGDNS-VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKE-TDKVREEHDEDMSIQRAISIVFDRRPELRLEG 182 (491)
Q Consensus 107 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (491)
. ....+ +++++....++.-. -...|..... -.....+++.. .........++.++++|++ ..
T Consensus 79 ~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r-----------~~ 144 (444)
T COG1232 79 LWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLS-SEAGLARALQEFIRPKSWEPKQDISVGEFIR-----------RR 144 (444)
T ss_pred ccCCcccceEeeCCcEEECCccc--eeecCCcccc-chhHHHHHHHhhhcccCCCCCCCcCHHHHHH-----------HH
Confidence 2 22233 23332222111111 1111111110 00111112111 1111234556889999975 45
Q ss_pred hHHHHHHHHHHhh-hhhhcCCccccchhcccc--------c-cc--------------ccCCccccccchHHHHHHHhcc
Q 011202 183 LAHKVLQWYLCRM-EGWFAADAETISLKSWDK--------E-EL--------------LPGGHGLMVRGYLPVINTLAKG 238 (491)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--------~-~~--------------~~~~~~~~~~G~~~l~~~l~~g 238 (491)
|++++++.++.|+ .+.|+.+.+.+|+..... . .. ..+-.+++.+|++.++++|++.
T Consensus 145 fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~ 224 (444)
T COG1232 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEK 224 (444)
T ss_pred HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHH
Confidence 7778888888874 579999999999873321 0 00 0124668889999999999874
Q ss_pred --CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEec
Q 011202 239 --LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 316 (491)
Q Consensus 239 --v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 316 (491)
.+|+++++|+.|..+..++.+++.+|+++.||.||+|+|++.+..++.. ....+.++++.+.....|.+.++
T Consensus 225 l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~------~~~~~~~~~~~~~s~~~vv~~~~ 298 (444)
T COG1232 225 LEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD------EAVSKAAKELQYTSVVTVVVGLD 298 (444)
T ss_pred hhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC------cchhhhhhhccccceEEEEEEec
Confidence 4688999999999998778888889989999999999999988765433 22356678888878888888888
Q ss_pred CC---CCCCCccceeecCCC-C-cceeee-----cccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCC
Q 011202 317 KV---FWPNVEFLGVVSDTS-Y-GCSYFL-----NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA 386 (491)
Q Consensus 317 ~~---~~~~~~~~g~~~~~~-~-~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~ 386 (491)
++ ..++ ..|+...+. . ...+.+ +...|.++..+.+.......+....+++||+++.++++|.++++..
T Consensus 299 ~~~~~~~~~--~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~ 376 (444)
T COG1232 299 EKDNPALPD--GYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN 376 (444)
T ss_pred cccccCCCC--ceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC
Confidence 74 2222 223333222 2 122211 2223446667766666555555677889999999999999999988
Q ss_pred CCCcEEEecccCCCCCCCcccccCCCCCC---hhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 387 SSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 387 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
.+|....+.+|... .+.| .+|+. ...+..+.+.++|++++|.+... -|+..|+.+|..||++++
T Consensus 377 ~~~~~~~v~r~~~~---~PqY---~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 377 GDPVFVEVTRWKYA---MPQY---EVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred cchhheeeeecccc---CCcc---chhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 88888889998642 2222 23432 23333444444799999999742 289999999999999875
No 19
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1e-34 Score=295.71 Aligned_cols=414 Identities=20% Similarity=0.236 Sum_probs=249.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC-CCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
...++|+|||||++||+||++|+++|++|+|+|+++++||++.|.. .+|+.+|.|.|++.+. ...+.++++++|+..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~--~~~~~~ll~elG~~~ 168 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNVQNLFGELGIND 168 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC--CchHHHHHHHhCCcc
Confidence 3467899999999999999999999999999999999999999965 4789999999999854 456899999999964
Q ss_pred eeccCCCccc--ccCCCcceeeecCCCCccChH---HHHHHH-----HHHHHHH--HHHHH-h-----hhcCCCCCCHHH
Q 011202 105 YRTSGDNSVL--YDHDLESYALFDMDGNQVPQE---LVTKVG-----EAFESIL--KETDK-V-----REEHDEDMSIQR 166 (491)
Q Consensus 105 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~--~~~~~-~-----~~~~~~~~~~~~ 166 (491)
.......... +......+..+. .....|.. ....+. ...+++. ..... . .....++.++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e 247 (567)
T PLN02612 169 RLQWKEHSMIFAMPNKPGEFSRFD-FPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKE 247 (567)
T ss_pred cceecccceEEEecCCCCceeeCc-CchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHH
Confidence 3211111111 111000110000 00001111 111110 0001110 00000 0 011235678888
Q ss_pred HHHHHHccChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccchhcccc--cccccC----Cccccccch-----HHHHHH
Q 011202 167 AISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDK--EELLPG----GHGLMVRGY-----LPVINT 234 (491)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~--~~~~~~----~~~~~~~G~-----~~l~~~ 234 (491)
|+++. ++.+.+.+.++.++. ..+..+++.+|+..+.. ...+.. ...++.++. ..+.+.
T Consensus 248 ~l~~~----------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~ 317 (567)
T PLN02612 248 WMRKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDH 317 (567)
T ss_pred HHHhc----------CCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHH
Confidence 87542 344444444444443 34455666666543321 001111 111233332 445555
Q ss_pred Hh-ccCCeecCceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEE
Q 011202 235 LA-KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKI 311 (491)
Q Consensus 235 l~-~gv~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 311 (491)
|. .|++|+++++|++|+.++++ +.|.+.+|+++.+|+||+|+|+..+..++.... .+....+.+..+.+.+..++
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~~~v~~v 395 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVGVPVINV 395 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCCCCeEEE
Confidence 54 38899999999999986554 357778898999999999999988865443211 11234455666778888899
Q ss_pred EEEecCCCCCCCccceeecCCCCcceeee--cc----cccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC
Q 011202 312 IMHFDKVFWPNVEFLGVVSDTSYGCSYFL--NL----HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD 385 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~ 385 (491)
++.|++++|.... ..+.........+. +. ..+++...+.+.. ..+++|..++++|+++.++++|+++||.
T Consensus 396 ~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~--~~a~~~~~~sdeei~e~vl~~L~~lfp~ 471 (567)
T PLN02612 396 HIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVF--APAEEWISRSDEDIIDATMKELAKLFPD 471 (567)
T ss_pred EEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhcCCCCeEEEEEE--EcChhhhcCCHHHHHHHHHHHHHHHCCc
Confidence 9999999875322 22221111111111 10 0123344333332 2567899999999999999999999997
Q ss_pred CCCC----cEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 011202 386 ASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 386 ~~~~----~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~ 461 (491)
...+ ..+....+...+.+ .+.. .++. ....|..++|++|||+|||++...|+++||||+.||++||+.|++.
T Consensus 472 ~~~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~ 547 (567)
T PLN02612 472 EISADQSKAKILKYHVVKTPRS--VYKT-VPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQD 547 (567)
T ss_pred ccccccCCceEEEEEEeccCCc--eEEe-CCCC-cccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHH
Confidence 5322 11122122222222 1211 1222 1234667899999999999998888899999999999999999877
Q ss_pred H
Q 011202 462 V 462 (491)
Q Consensus 462 l 462 (491)
+
T Consensus 548 ~ 548 (567)
T PLN02612 548 Y 548 (567)
T ss_pred h
Confidence 5
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=286.06 Aligned_cols=401 Identities=18% Similarity=0.137 Sum_probs=251.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCC-C
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL-P 103 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~-~ 103 (491)
|.+++||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|+|++.. .+..+.+++++++. +
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~--~~~~~~~l~~~l~~~~ 78 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--KSPEVMDLWNEILPDD 78 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc--CCHHHHHHHHHhcCCC
Confidence 35678999999999999999999999999999999999999999998999999999999874 45678999999985 2
Q ss_pred eeeccCCCc-ccccCCCcceeeecCCCCccChHHHHHH-----HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChh
Q 011202 104 LYRTSGDNS-VLYDHDLESYALFDMDGNQVPQELVTKV-----GEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPE 177 (491)
Q Consensus 104 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (491)
......... +.+.+.. ..+|......+ ...+...............++.++.+|+...
T Consensus 79 ~~~~~~~~~~~~~~g~~----------~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~------ 142 (479)
T PRK07208 79 DFLLRPRLSRIYYRGKF----------FDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINR------ 142 (479)
T ss_pred ccccccccceEEECCEE----------ecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHh------
Confidence 111111111 1111111 11111111111 0111111111111111223578999998543
Q ss_pred hhhhhhHHHHHHHHHHhhh-hhhcCCccccchhcccccc----------------------------cccCCccccccch
Q 011202 178 LRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKEE----------------------------LLPGGHGLMVRGY 228 (491)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~----------------------------~~~~~~~~~~~G~ 228 (491)
+.+.+.+.++.++. ..++.+++.+++....... .......++.+|+
T Consensus 143 -----~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~ 217 (479)
T PRK07208 143 -----FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP 217 (479)
T ss_pred -----hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc
Confidence 44555666666543 4677778777764321000 0012345788999
Q ss_pred HHHHHHHhc-----cCCeecCceeEEEEecCCcE--EEEE--cCCc--EEEcCEEEEecchhhhccCcccccCCCchHHH
Q 011202 229 LPVINTLAK-----GLDIRLGHRVTKITRHYIGV--KVTV--EGGK--TFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 297 (491)
Q Consensus 229 ~~l~~~l~~-----gv~i~~~~~V~~I~~~~~~v--~v~~--~~g~--~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~ 297 (491)
+.+++.|.+ |++|+++++|++|..+++++ .++. .+|+ ++.||+||+|+|+..+..++ .+.+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l---~~~~~~~~~ 294 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAAL---DPPPPPEVR 294 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhc---CCCCCHHHH
Confidence 999988864 78999999999999987763 2332 2353 58999999999998876543 345666677
Q ss_pred HHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCc---c---eeeecccccCCce-EEE-EEeccchhHHhhcCCHH
Q 011202 298 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG---C---SYFLNLHKATGHC-VLV-YMPAGQLARDIEKMSDE 369 (491)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~---~---~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~ 369 (491)
+.+..+++.+..++++.++++.+....+ .++...... . ..+.....|++.+ .+. .++... ......++++
T Consensus 295 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~-~~~~~~~~de 372 (479)
T PRK07208 295 AAAAGLRYRDFITVGLLVKELNLFPDNW-IYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFE-GDDLWNMSDE 372 (479)
T ss_pred HHHhCCCcceeEEEEEEecCCCCCCCce-EEecCCCCccceecccccCCcccCCCCCceEEEEEEEccC-CCccccCCHH
Confidence 7778888888889999999864332221 111111100 0 1111112244443 221 222222 2335578999
Q ss_pred HHHHHHHHHHHHhCCC-CCCCcEEEecccCCCCCCCcccccCCCCCChhhHHH---hcCCcCcEEEeccccCCCCCccch
Q 011202 370 AAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYER---LRIPVDNLFFAGEATSMSYPGSVH 445 (491)
Q Consensus 370 e~~~~~~~~L~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~---~~~p~~~l~~aG~~~~~~~~g~~e 445 (491)
|++++++++|+++.+. ..++....+.+|.. +.+.| ..+. .+..+. +.++.+|||+||++..+.+ .++|
T Consensus 373 el~~~~~~~L~~l~~~~~~~~~~~~v~r~~~---a~P~y---~~~~-~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d 444 (479)
T PRK07208 373 DLIALAIQELARLGLIRPADVEDGFVVRVPK---AYPVY---DGTY-ERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQD 444 (479)
T ss_pred HHHHHHHHHHHHcCCCChhheeEEEEEEecC---cccCC---CchH-HHHHHHHHHHHHhcCCceeecccccccc-CChh
Confidence 9999999999998542 22355666777642 22222 1222 122222 4466789999999877754 5999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011202 446 GAFSTGLMAAEDCRMR 461 (491)
Q Consensus 446 gA~~sg~~aA~~i~~~ 461 (491)
+|+.||..+|+.|...
T Consensus 445 ~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 445 HSMLTAMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999977664
No 21
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=9.3e-33 Score=276.22 Aligned_cols=405 Identities=18% Similarity=0.168 Sum_probs=244.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeec-CCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeecc
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (491)
+|+|||||++||+||+.|++.|++|+|+|+++++||+++|. ...|+.+|.|.|++.+. ...+.++++++|+......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lg~~~~~~~ 78 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC--YANLFRLMKKVGAEDNLLL 78 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc--hHHHHHHHHHcCCcccccc
Confidence 58999999999999999999999999999999999999996 46799999999999854 4678999999998632211
Q ss_pred CCCccccc-CCCcceeeecCCCCccChHHHHH--------HHHHHHHHHHHH--HHhh------------hcCCCCCCHH
Q 011202 109 GDNSVLYD-HDLESYALFDMDGNQVPQELVTK--------VGEAFESILKET--DKVR------------EEHDEDMSIQ 165 (491)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~------------~~~~~~~~~~ 165 (491)
......+. .......+........|...... ....+ ++.... .... -...++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dkl-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 79 KEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKL-RNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHH-HHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 11111111 00000000000000011000000 00100 000001 0000 0123467888
Q ss_pred HHHHHHHccChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccchhcccc--ccc---cc-CCccccccch-----HHHHH
Q 011202 166 RAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDK--EEL---LP-GGHGLMVRGY-----LPVIN 233 (491)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~--~~~---~~-~~~~~~~~G~-----~~l~~ 233 (491)
+|+++. ...+.+++.++.++. +.+..+++.+|+..+.. ... .. ....++.+++ +.+.+
T Consensus 158 ~~l~~~----------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~ 227 (474)
T TIGR02732 158 EWFLSH----------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILE 227 (474)
T ss_pred HHHHHc----------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHH
Confidence 887543 344456777777754 57778888888654421 000 11 1223444543 44667
Q ss_pred HHhc-cCCeecCceeEEEEecC--Cc---E-EEEEcCC---cEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhc
Q 011202 234 TLAK-GLDIRLGHRVTKITRHY--IG---V-KVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 303 (491)
Q Consensus 234 ~l~~-gv~i~~~~~V~~I~~~~--~~---v-~v~~~~g---~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~ 303 (491)
.|.+ |++|+++++|++|+.++ ++ + .|.+.+| +++.+|+||+|+|++.+.+++.+..+. ......+.++
T Consensus 228 ~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~--~~~~~~l~~l 305 (474)
T TIGR02732 228 YIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQ--FEEFDNIYKL 305 (474)
T ss_pred HHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhc--CHHHhhHhcC
Confidence 7765 88999999999999854 22 2 3445444 468999999999999887765432111 1244567788
Q ss_pred CCCcccEEEEEecCCCCCCCc---------ccee-----ecCCCCcceeee----cc--cccCCc-eEEEEEeccchhHH
Q 011202 304 GVGIENKIIMHFDKVFWPNVE---------FLGV-----VSDTSYGCSYFL----NL--HKATGH-CVLVYMPAGQLARD 362 (491)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~~~---------~~g~-----~~~~~~~~~~~~----~~--~~~~~~-~~l~~~~~~~~~~~ 362 (491)
.+.+...|++.|+++.-.... ..+. +....+.+ +.. .. ..+.+. ..+-+++.. +.+
T Consensus 306 ~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 382 (474)
T TIGR02732 306 DAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSC-FADLALTSPDDYYKEGQGSLLQCVLTP--GDP 382 (474)
T ss_pred CCCCeEEEEEEeccccccccchhhhhcccccccccccccccCcccee-eehhhccCHHHHhccCCCeEEEEEEeC--hhh
Confidence 888888999999875432110 0011 01111111 001 01 011222 223333322 356
Q ss_pred hhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCC
Q 011202 363 IEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSY 440 (491)
Q Consensus 363 ~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~ 440 (491)
+..++++|+++.+.++|++++|.... +.+..+.+.....+. ..||. ...+|..++|++|||+|||++...|
T Consensus 383 ~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~------~~pg~-~~~~P~~~t~~~~l~lAGD~t~~~~ 455 (474)
T TIGR02732 383 WMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR------EAPGM-DPFRPDQKTPISNFFLAGSYTQQDY 455 (474)
T ss_pred hcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec------cCCCC-cccCCCCCCCCCCeEEeccccccCc
Confidence 77899999999999999999997543 333333333222111 12344 2455778899999999999999999
Q ss_pred CccchHHHHHHHHHHHHHH
Q 011202 441 PGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 441 ~g~~egA~~sg~~aA~~i~ 459 (491)
+.+||||+.||.+||+.|+
T Consensus 456 pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 456 IDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred hHHHhHHHHHHHHHHHHhC
Confidence 9999999999999999763
No 22
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.8e-32 Score=275.41 Aligned_cols=421 Identities=18% Similarity=0.141 Sum_probs=260.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC-CCCceeecccceeeCCCCCCcHHHHHHHcCCCee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (491)
++++|+|||||++||++|+.|+++|++|+|+|+.+++||+++|.. ..|+.+|+|.|++.+. ..++.++++++|+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~--~~~~~~ll~~LGl~~~ 151 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC--YNNLFRLMKKVGADEN 151 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC--cHHHHHHHHhcCCccc
Confidence 457999999999999999999999999999999999999999874 5789999999999854 4679999999999643
Q ss_pred eccCCCcc-cccCCCcceeeecCCCCccChHHHHHHH-----HHHHHHHH--------HHHHh-h-------hcCCCCCC
Q 011202 106 RTSGDNSV-LYDHDLESYALFDMDGNQVPQELVTKVG-----EAFESILK--------ETDKV-R-------EEHDEDMS 163 (491)
Q Consensus 106 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~-~-------~~~~~~~~ 163 (491)
........ +...+..............+......+. ...+++.. .+..+ . -...++.+
T Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~s 231 (569)
T PLN02487 152 LLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDIS 231 (569)
T ss_pred ccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCc
Confidence 22111111 1110000000000000000110011110 00011110 00000 0 01234688
Q ss_pred HHHHHHHHHccChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccchhccccc-cc---cc--CCccccccchHH-HHHHH
Q 011202 164 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKE-EL---LP--GGHGLMVRGYLP-VINTL 235 (491)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~-~~---~~--~~~~~~~~G~~~-l~~~l 235 (491)
+.+|+.+. .....+++.++.++. +.+..+++++|+..+... .. .. ....++.+|+.. +.+.+
T Consensus 232 v~~~l~r~----------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl 301 (569)
T PLN02487 232 FSDWFTSH----------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPI 301 (569)
T ss_pred HHHHHHHh----------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHH
Confidence 88887544 333446777777754 578888888887654421 11 11 124577888884 66665
Q ss_pred hc-----cCCeecCceeEEEEecC--Cc----EEEEE---cCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHh
Q 011202 236 AK-----GLDIRLGHRVTKITRHY--IG----VKVTV---EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 301 (491)
Q Consensus 236 ~~-----gv~i~~~~~V~~I~~~~--~~----v~v~~---~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~ 301 (491)
.+ |++|+++++|.+|+.++ ++ ..|.+ .+++++.+|.||+|+|++.+.+++....+..+ ....+.
T Consensus 302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~--~~~~l~ 379 (569)
T PLN02487 302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYE--FFDNIY 379 (569)
T ss_pred HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccH--HHhHHh
Confidence 43 89999999999999863 22 35555 33457899999999999988765433211111 245677
Q ss_pred hcCCCcccEEEEEecCCCCCCC---------ccceee-----cCCCCcceee--ec----ccccCCceEEEEEeccchhH
Q 011202 302 DLGVGIENKIIMHFDKVFWPNV---------EFLGVV-----SDTSYGCSYF--LN----LHKATGHCVLVYMPAGQLAR 361 (491)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~~~~ 361 (491)
++...+...+++.||++.-... ...|.. .+..+.+... .. +........+-++... ++
T Consensus 380 ~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~--a~ 457 (569)
T PLN02487 380 KLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTP--GD 457 (569)
T ss_pred cCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcC--Cc
Confidence 7877888899999997653211 011211 1111111000 00 1011112334444332 45
Q ss_pred HhhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCC
Q 011202 362 DIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMS 439 (491)
Q Consensus 362 ~~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~ 439 (491)
++..++++|+++.+.++|.+++|.... +....+.+.....+. ..+|. ...+|..++|++|||+||||+...
T Consensus 458 ~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~------~~pg~-~~~RP~~~T~~~nl~LAGD~t~~~ 530 (569)
T PLN02487 458 PYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYR------EAPGM-DPFRPDQKTPISNFFLAGSYTKQD 530 (569)
T ss_pred cccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceec------cCCCc-cccCCCCCCCCCCEEEeCcccccC
Confidence 688899999999999999999998643 334334443322111 12443 234588899999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011202 440 YPGSVHGAFSTGLMAAEDCRMRVLERYGELD 470 (491)
Q Consensus 440 ~~g~~egA~~sg~~aA~~i~~~l~~~~~~~~ 470 (491)
|+.+||||+.||.+||+.++++.....++-.
T Consensus 531 yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~ 561 (569)
T PLN02487 531 YIDSMEGATLSGRQAAAYICEAGEELAGLRK 561 (569)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999999999988644444433
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.2e-32 Score=273.33 Aligned_cols=388 Identities=23% Similarity=0.272 Sum_probs=248.1
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCce--eecccceeeCCCCCCcHHHHHHHcCCCeeeccCCCcc-cccCC
Q 011202 42 AAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP--VDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSV-LYDHD 118 (491)
Q Consensus 42 ~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~--~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~-~~~~~ 118 (491)
+||++|+++|++|+|+|+++++||+++|...+++. +|.|+|++++. +..+.++++++|++.........+ ++...
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~ 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGA--YTNLLALLRRIGAEPRLQGPRLPLPFYDPG 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcc--cHHHHHHHHHhCCchhhhcccCCcceecCC
Confidence 58999999999999999999999999999888654 99999999843 467899999999875432111111 11111
Q ss_pred CcceeeecCCCCccChHHHHH----------HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhhhhHHHHH
Q 011202 119 LESYALFDMDGNQVPQELVTK----------VGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVL 188 (491)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (491)
.....+ .......|...... ....+...+..+.+......++.++.+|+++. .+++.+.
T Consensus 79 ~~~~~~-~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~----------~~~~~~~ 147 (419)
T TIGR03467 79 GRLSRL-RLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAA----------GQSERLI 147 (419)
T ss_pred CCceee-cCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHc----------CCCHHHH
Confidence 000011 00000111111000 11111111111111111234678999987543 3345556
Q ss_pred HHHHHhh-hhhhcCCccccchhccccc---ccc----cCCccccccchHHHHHH-Hh-----ccCCeecCceeEEEEecC
Q 011202 189 QWYLCRM-EGWFAADAETISLKSWDKE---ELL----PGGHGLMVRGYLPVINT-LA-----KGLDIRLGHRVTKITRHY 254 (491)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~~s~~~~~~~---~~~----~~~~~~~~~G~~~l~~~-l~-----~gv~i~~~~~V~~I~~~~ 254 (491)
+.++.++ .+.++.+++.+++..+... ... .....++.+|+.+++.. |+ .|++|+++++|++|+.++
T Consensus 148 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~ 227 (419)
T TIGR03467 148 ERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA 227 (419)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC
Confidence 6566654 3567778888876544321 111 12356788898775533 43 388999999999999988
Q ss_pred CcEEEEE-cCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCC
Q 011202 255 IGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTS 333 (491)
Q Consensus 255 ~~v~v~~-~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 333 (491)
+++.+.. .+|+++.||+||+|+|+..+..++.. +...+.+..+++.+..++++.|++++|.+.+..++....
T Consensus 228 ~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~------~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~- 300 (419)
T TIGR03467 228 GGIRALVLSGGETLPADAVVLAVPPRHAASLLPG------EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGL- 300 (419)
T ss_pred CcceEEEecCCccccCCEEEEcCCHHHHHHhCCC------chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCc-
Confidence 8865443 46778999999999999988764321 134567788899888899999999998665555554322
Q ss_pred CcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCC--CCCcEEEecccCCCCCCCcccccCC
Q 011202 334 YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANSLGSYSYDT 411 (491)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~~g~~~~~~ 411 (491)
...++.....++....+.++..+ .+.+..++++++++.++++|++++|.. ..+....+.+|....+ .+ .
T Consensus 301 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 371 (419)
T TIGR03467 301 -AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATF-----AA-T 371 (419)
T ss_pred -eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCcc-----cc-C
Confidence 12222222222222344333332 456778899999999999999999865 2344555666654322 11 1
Q ss_pred CCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 412 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 412 ~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
++.. ...|.+.+|.+|||||||+++.+++++||||+.||.+||++|+
T Consensus 372 ~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 372 PGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred Cccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 2321 2345566889999999999998778899999999999999875
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=7.1e-32 Score=273.63 Aligned_cols=421 Identities=20% Similarity=0.182 Sum_probs=236.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeee--
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR-- 106 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~-- 106 (491)
.||+|||||++||+||..|+++|++|+|+||++++||+++|.+.+|+.||.|++++........+..+++++|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 689999999999999999999999999999999999999999999999999999997654445578889999987421
Q ss_pred -ccCCCcccccCCCcceeeecCC-------CCccChH--HHHHHHHHHHHHHHHHHHhhhc--CCCCCCHHHHHHHHHc-
Q 011202 107 -TSGDNSVLYDHDLESYALFDMD-------GNQVPQE--LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFD- 173 (491)
Q Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~- 173 (491)
.+....+.+........+.... ...+|.+ ....+.+.+. ........ .....+..++......
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQ----SNWRFAGRDPVLPPRNYWDLLQLVSAL 157 (492)
T ss_pred cCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHH----HHHHHhhcCCCCCCCCHHHHHHHHHhc
Confidence 1111111111110001101000 0000110 0001111110 00000000 0001111111110000
Q ss_pred -------------cC-hhhhhhh-hHHHHHHHHHHhhhh-hhcCCccccchhcc---cccccccCCccccccchHHHHHH
Q 011202 174 -------------RR-PELRLEG-LAHKVLQWYLCRMEG-WFAADAETISLKSW---DKEELLPGGHGLMVRGYLPVINT 234 (491)
Q Consensus 174 -------------~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~G~~~l~~~ 234 (491)
.. ..+.... +.++.++.++..... +.+.++...+.... ........|.+++.||+++|+++
T Consensus 158 ~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~a 237 (492)
T TIGR02733 158 RPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDR 237 (492)
T ss_pred ChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHH
Confidence 00 0011111 334444444443333 22333434433221 11112234567899999999999
Q ss_pred Hhc-----cCCeecCceeEEEEecCCcE-EEEEcCC-----cEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhc
Q 011202 235 LAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGG-----KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 303 (491)
Q Consensus 235 l~~-----gv~i~~~~~V~~I~~~~~~v-~v~~~~g-----~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~ 303 (491)
|++ |++|+++++|++|..+++++ .|.+.+| +++.||+||+|+|+..+..++. .+.+++...+.+..+
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~--~~~~~~~~~~~~~~~ 315 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLG--PLGLPPGYRKRLKKL 315 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcC--cccCCHHHHHHHhcC
Confidence 864 78999999999999987753 4544444 5789999999999988766432 245666666677777
Q ss_pred CCCccc-EEEEEecCCCCC--CCccceeecCCCCcceeee------cccccCCceEEEEEeccch-------hHHhhcCC
Q 011202 304 GVGIEN-KIIMHFDKVFWP--NVEFLGVVSDTSYGCSYFL------NLHKATGHCVLVYMPAGQL-------ARDIEKMS 367 (491)
Q Consensus 304 ~~~~~~-~v~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~-------~~~~~~~~ 367 (491)
++.+.. .+++.+++...+ ............. ..+. ....|+|+.++.+.+..+. ..+|.. .
T Consensus 316 ~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~-~ 392 (492)
T TIGR02733 316 PEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTA-K 392 (492)
T ss_pred CCCCceEEEEEeecccccCCCCCcceeeccCCCc--eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHH-H
Confidence 776654 788888763211 1111112211111 1111 1124567766644432221 122333 3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEec----ccCCC-CCCCcc-cccC-CCCCChhhHHHhcCCcCcEEEeccccCCCC
Q 011202 368 DEAAANFAFTQLKKILPDASSPIQYLVS----HWGTD-ANSLGS-YSYD-TVGKSHDLYERLRIPVDNLFFAGEATSMSY 440 (491)
Q Consensus 368 ~~e~~~~~~~~L~~~~p~~~~~~~~~~~----~w~~~-~~~~g~-~~~~-~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~ 440 (491)
++++.+.+++.|++.+|++.+.+..... .|... ....|+ +... ...+.....+..++|++|||+||+++.+
T Consensus 393 k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~p-- 470 (492)
T TIGR02733 393 KKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHP-- 470 (492)
T ss_pred HHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCC--
Confidence 6678999999999999988664433221 11111 111222 2111 1222211223337899999999999955
Q ss_pred CccchHHHHHHHHHHHHHHH
Q 011202 441 PGSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 441 ~g~~egA~~sg~~aA~~i~~ 460 (491)
++++.|++.||+.||+.|++
T Consensus 471 G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 471 GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCcHHHHHHHHHHHHHHHhh
Confidence 35899999999999998875
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=8.1e-31 Score=265.34 Aligned_cols=427 Identities=18% Similarity=0.160 Sum_probs=232.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCC---CCcHHHHHHHcCCCee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ---ENPLAPVISRLGLPLY 105 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lg~~~~ 105 (491)
+||+|||||++||+||.+|+++|++|+|+||++.+||++++...+|+.||.|++++.+... .+.+.+++..++..+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 5899999999999999999999999999999999999999999999999999999765432 2335566776765432
Q ss_pred eccCCCcc--cccCCCcceeeecCCCCccChHH---HHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHHHHHHHH---
Q 011202 106 RTSGDNSV--LYDHDLESYALFDMDGNQVPQEL---VTKVGEAFESILKETDKVREE-----HDEDMSIQRAISIVF--- 172 (491)
Q Consensus 106 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--- 172 (491)
.......+ .+... ....+. .+...+...+ .....+.+.++...+.+.... ...-.....+...+.
T Consensus 81 ~~~~~~~~~~~~~~g-~~~~~~-~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 81 TIPDPVQIHYHLPNG-LNVKVH-REYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred ccCCCccEEEECCCC-eeEeee-cCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 21111111 11111 011111 1100000000 111223344444433322110 000000001100000
Q ss_pred -----------ccChhhhhhhhHHHHHHHHHHhhhhhhcCCc-cccchhccc--ccccccCCccccccchHHHHHHHhc-
Q 011202 173 -----------DRRPELRLEGLAHKVLQWYLCRMEGWFAADA-ETISLKSWD--KEELLPGGHGLMVRGYLPVINTLAK- 237 (491)
Q Consensus 173 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~--~~~~~~~~~~~~~~G~~~l~~~l~~- 237 (491)
.....+....+.++.++.++......++..+ ...+..... ......++.+++.+|+..++++|.+
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~ 238 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKG 238 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHH
Confidence 0001111222333334444333333333332 232221111 1112345778899999998888854
Q ss_pred ----cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCc-ccEE
Q 011202 238 ----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI-ENKI 311 (491)
Q Consensus 238 ----gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~v 311 (491)
|++|+++++|++|..++++ +.|.+++|+++.+|.||+|++++.+...++. ...+++.....++.+..+. ..++
T Consensus 239 ~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 239 LEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhccCCCceEEE
Confidence 8899999999999987766 4788888988999999999987655432221 1223333334445555543 4588
Q ss_pred EEEecCCCCCCCcc-ceeecC-----CCCcceee---e----cccccCCceEEEEEeccchh-------HHhhcCCHHHH
Q 011202 312 IMHFDKVFWPNVEF-LGVVSD-----TSYGCSYF---L----NLHKATGHCVLVYMPAGQLA-------RDIEKMSDEAA 371 (491)
Q Consensus 312 ~~~~~~~~~~~~~~-~g~~~~-----~~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~e~ 371 (491)
++.++....++... .-.+.. ......++ . +...|+|++++.+++..... .+|.. .++++
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~-~k~~~ 396 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEA-KKEAD 396 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHH-HHHHH
Confidence 88888743221110 001100 00001111 1 12235677776655532221 12322 26779
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEec----ccCC-CCCCCcccccCCC-CCChhhH-HHhcCCcCcEEEeccccCCCCCccc
Q 011202 372 ANFAFTQLKKILPDASSPIQYLVS----HWGT-DANSLGSYSYDTV-GKSHDLY-ERLRIPVDNLFFAGEATSMSYPGSV 444 (491)
Q Consensus 372 ~~~~~~~L~~~~p~~~~~~~~~~~----~w~~-~~~~~g~~~~~~~-~~~~~~~-~~~~~p~~~l~~aG~~~~~~~~g~~ 444 (491)
.+.+++.|++++|++++-+..... .|.. .....|.|..... .+..... |..++|++|||+||+++.+ ++++
T Consensus 397 ~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~p--G~Gv 474 (493)
T TIGR02730 397 AERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFP--GQGL 474 (493)
T ss_pred HHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCC--CCCH
Confidence 999999999999987654333221 1211 1112233321100 0010111 3467899999999999855 3589
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011202 445 HGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 445 egA~~sg~~aA~~i~~~ 461 (491)
.+++.||+.||+.|+..
T Consensus 475 ~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 475 NAVAFSGFACAHRVAAD 491 (493)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=7.6e-32 Score=274.28 Aligned_cols=421 Identities=17% Similarity=0.139 Sum_probs=232.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe------
Q 011202 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL------ 104 (491)
Q Consensus 31 v~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~------ 104 (491)
|+|||||++||+||.+|+++|++|+|+||++++||+++|...+|+.||.|++++.. ...+.++++++|.++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~---~~~~~~l~~~lg~~l~~~l~~ 77 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM---PEALEELFALAGRDLADYVEL 77 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc---ccHHHHHHHHcCCChhheEEE
Confidence 68999999999999999999999999999999999999999999999999999862 356778889888542
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccCh---HHHHHHHHHHHHHHHHHHHhhhc------CCCCCCHHHHHHH----H
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQ---ELVTKVGEAFESILKETDKVREE------HDEDMSIQRAISI----V 171 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~ 171 (491)
.+.+....+.+. +.....+. .....+.. .......+.+.++...+..+... .....+..+++.. .
T Consensus 78 ~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (502)
T TIGR02734 78 VPLDPFYRLCWE-DGSQLDVD-NDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL 155 (502)
T ss_pred EECCCceEEECC-CCCEEEec-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence 111111111121 11111111 10000000 00011122233333332222110 0001122222111 0
Q ss_pred Hc-----cChhhhhhhhHHHHHHHHHHhhhhhhcCCccccchhccc-ccccccCCccccccchHHHHHHHhc-----cCC
Q 011202 172 FD-----RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD-KEELLPGGHGLMVRGYLPVINTLAK-----GLD 240 (491)
Q Consensus 172 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~G~~~l~~~l~~-----gv~ 240 (491)
.. .........+..+.++.++.....+++.++...++.... ......++.+++.+|+..++++|.+ |++
T Consensus 156 ~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~ 235 (502)
T TIGR02734 156 LALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGE 235 (502)
T ss_pred hhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCE
Confidence 00 000011122333334444332233555555544432211 1122346667899999999988864 889
Q ss_pred eecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCC-cccEEEEEec--
Q 011202 241 IRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVG-IENKIIMHFD-- 316 (491)
Q Consensus 241 i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~v~~~~~-- 316 (491)
|+++++|++|..++++ +.|.+++|+++.||.||+|+++..+...++. .+..+....+.++.+.++ ...++++.++
T Consensus 236 i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~ 314 (502)
T TIGR02734 236 LRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLP-NHPRRRYPAARLSRKRPSPSLFVLYFGLLGV 314 (502)
T ss_pred EEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC-ccccccccccccccCCcCCeeeEEEEeeccc
Confidence 9999999999988776 5788888888999999999998666433321 111222233444555544 3457788887
Q ss_pred -CCCCCCCccceeec-----------------CCCCcc-eeee----cccccCCceEEEEEeccch----hHHhhcCCHH
Q 011202 317 -KVFWPNVEFLGVVS-----------------DTSYGC-SYFL----NLHKATGHCVLVYMPAGQL----ARDIEKMSDE 369 (491)
Q Consensus 317 -~~~~~~~~~~g~~~-----------------~~~~~~-~~~~----~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~ 369 (491)
.. +++.....+.. ++.... .... ....|+|++.+.+++..+. ...|.. .++
T Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~ 392 (502)
T TIGR02734 315 DGH-WPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGP 392 (502)
T ss_pred cCc-CCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHH
Confidence 33 23211100110 001110 1111 1123566666544432221 122433 367
Q ss_pred HHHHHHHHHHHHh-CCCCCCCcEEEe----cccCCC-CCCCcc-cccC-CCCCChhhHHH-hcCCcCcEEEeccccCCCC
Q 011202 370 AAANFAFTQLKKI-LPDASSPIQYLV----SHWGTD-ANSLGS-YSYD-TVGKSHDLYER-LRIPVDNLFFAGEATSMSY 440 (491)
Q Consensus 370 e~~~~~~~~L~~~-~p~~~~~~~~~~----~~w~~~-~~~~g~-~~~~-~~~~~~~~~~~-~~~p~~~l~~aG~~~~~~~ 440 (491)
++.+.+++.|++. +|++++-+.... ..|... ....|+ +... ...+....+|. .++|++|||+||+++.+
T Consensus 393 ~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~p-- 470 (502)
T TIGR02734 393 RYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHP-- 470 (502)
T ss_pred HHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCC--
Confidence 7999999999998 998865433321 111111 111222 1111 11222222332 46789999999999855
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 011202 441 PGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 441 ~g~~egA~~sg~~aA~~i~~~ 461 (491)
++++.+++.||+.||+.|+..
T Consensus 471 G~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 471 GAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 358999999999999998875
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.97 E-value=7.9e-30 Score=220.41 Aligned_cols=322 Identities=20% Similarity=0.192 Sum_probs=221.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeecc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (491)
.+|+||||||+||+||+.|+.+|..|+||||+.-+|||+.|++..+..||.|+.+|.. .+..+.++++.+..+-..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~--~~~~F~~~Ve~~~~~glV-- 77 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP--RDELFLRAVEALRDDGLV-- 77 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC--CchHHHHHHHHHHhCCce--
Confidence 4799999999999999999999999999999999999999999999999999999963 334455555544322000
Q ss_pred CCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhhhhHHHHH
Q 011202 109 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVL 188 (491)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (491)
..
T Consensus 78 ----------------------------------------------------------------------------~~-- 79 (331)
T COG3380 78 ----------------------------------------------------------------------------DV-- 79 (331)
T ss_pred ----------------------------------------------------------------------------ee--
Confidence 00
Q ss_pred HHHHHhhhhhhcCCccccchhcccccccccCCccccccchHHHHHHHhccCCeecCceeEEEEecCCcEEEEEcCC-cEE
Q 011202 189 QWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG-KTF 267 (491)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g-~~~ 267 (491)
+ . ...+...-...+ . .-.... +....||.+|.+.|+..++++++++|++|...++.|++.+++| +..
T Consensus 80 --W-~--~~~~~~~~~~~~-~-----~~d~~p-yvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~ 147 (331)
T COG3380 80 --W-T--PAVWTFTGDGSP-P-----RGDEDP-YVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHT 147 (331)
T ss_pred --c-c--ccccccccCCCC-C-----CCCCCc-cccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence 0 0 000000000000 0 000011 4556789999999999999999999999999988999999665 467
Q ss_pred EcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCcceeee-c-c---
Q 011202 268 VADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-N-L--- 342 (491)
Q Consensus 268 ~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~--- 342 (491)
.+|.||+|+|.+++..++......+|...+..+..+.|.+-..+.+.|..+.-. .+.|+..+.. +..|.- + .
T Consensus 148 ~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~--P~~G~~vdg~-~laWla~d~sK~g 224 (331)
T COG3380 148 QFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR--PWPGNFVDGH-PLAWLARDASKKG 224 (331)
T ss_pred ccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC--CCCCcccCCC-eeeeeeccccCCC
Confidence 999999999988876655433345777788889899998888888888765421 2334333222 222221 1 1
Q ss_pred cccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCC-CCCCCcEEEecccCCCCCCCcccccCCCCCChhhHHH
Q 011202 343 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYER 421 (491)
Q Consensus 343 ~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~ 421 (491)
+.+.+ .++++....+.+....+.++++.+..+......+.+ .+++|.....++|.+.... +....-+.
T Consensus 225 ~~p~~-~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~----------~~~~~~~L 293 (331)
T COG3380 225 HVPDG-EIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPN----------DAVAGPPL 293 (331)
T ss_pred CCCcC-ceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccccccc----------ccccCCcc
Confidence 11333 356666666677777888888888877777777776 5677877778999743111 11001011
Q ss_pred hcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 011202 422 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 422 ~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~ 461 (491)
...+-.+||+|||+++ +|-+|||+.||..+|+.|++.
T Consensus 294 ~ad~~~~l~~cGDwc~---GgrVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 294 DADRELPLYACGDWCA---GGRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred ccCCCCceeeeccccc---CcchhHHHhccHHHHHHHHhc
Confidence 1233469999999994 468999999999999988764
No 28
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=3.2e-27 Score=236.88 Aligned_cols=247 Identities=27% Similarity=0.288 Sum_probs=144.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcC-CCee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (491)
+.+||+|||||++||+||.+|+|+|++|+|+||++++||+++|.+..||.||+|++++... ....++.+++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~----~~~~~~~~l~~l~~~ 77 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP----DPGPLFRELGNLDAD 77 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecC----chHHHHHHhccCccc
Confidence 4689999999999999999999999999999999999999999999999999999887633 2336666666 4321
Q ss_pred -----eccCCCcccccCCCcceeeecCCCCccChHHH----HHHHHHHHHHHHHHHHh----hhc----CCC-----CCC
Q 011202 106 -----RTSGDNSVLYDHDLESYALFDMDGNQVPQELV----TKVGEAFESILKETDKV----REE----HDE-----DMS 163 (491)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~----~~~-----~~~ 163 (491)
..+....+.+... ........... ..... ....+.+.++...+.+. ... ... ...
T Consensus 78 ~l~~~~~~~~~~~~~~~g--~~~~~~~d~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (487)
T COG1233 78 GLDLLPPDPAYRVFLPDG--DAIDVYTDLEA-TAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDT 154 (487)
T ss_pred ceeeeccCCceeeecCCC--CEEEecCCHHH-HHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcccc
Confidence 1111111111100 00000000000 00000 01122233333222221 110 111 111
Q ss_pred HHHHHHH---HHccChhhhhhhhHHHHHHHHHHhhhhhhcCCccccc-hhcccccccccCCccccccchHHHHHHHhc--
Q 011202 164 IQRAISI---VFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETIS-LKSWDKEELLPGGHGLMVRGYLPVINTLAK-- 237 (491)
Q Consensus 164 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~-- 237 (491)
...++.. ............|..+.++..+.......+.++...+ +...........|..++.||++.++++|++
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~ 234 (487)
T COG1233 155 PERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELA 234 (487)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHH
Confidence 1122211 1111111112225545555444332211113333333 222223445567888999999999999976
Q ss_pred ---cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhh
Q 011202 238 ---GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 238 ---gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
|++|+++++|++|..++++ +++.+.+|+.+++|.||+++.+..
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~ 281 (487)
T COG1233 235 REHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPAL 281 (487)
T ss_pred HHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhh
Confidence 9999999999999998876 677787887889999999998733
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.94 E-value=8e-25 Score=195.81 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=188.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC----CCCceeecccceeeCCCCCCcHHHHHHHcCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLGASWLHGVCQENPLAPVISRLGL 102 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (491)
+.++|+|||+|++||+|||.|++. ++||+||+.+++||+++|.. ..|+.+|.|.+.++.. .+..+..|++++|.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~-tYpnl~~Lf~~iGv 84 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER-TYPNLTRLFKTIGV 84 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC-CcchHHHHHHHcCC
Confidence 456899999999999999999987 79999999999999999974 3467899999988753 46789999999999
Q ss_pred CeeeccCCCcccccCCCcc-------eeeecCCCCccChHHHHHHHHHHHHHHHH-HHHhhhcCCCCCCHHHHHHHHHcc
Q 011202 103 PLYRTSGDNSVLYDHDLES-------YALFDMDGNQVPQELVTKVGEAFESILKE-TDKVREEHDEDMSIQRAISIVFDR 174 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 174 (491)
+....+...++..+..... ..++........+.+...+++.+ +|... -..-......+.++.+|+
T Consensus 85 ~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiL-rf~r~~~~~~d~~~~~~~tl~~~L------ 157 (447)
T COG2907 85 DTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEIL-RFYRSDLAPSDNAGQGDTTLAQYL------ 157 (447)
T ss_pred CCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHH-HHhhhhccchhhhcCCCccHHHHH------
Confidence 8766665555544433222 12233333333344333333322 22221 111111233467888886
Q ss_pred ChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccch---hccc-------ccccc-cCCccccccchHHHHHHHhccC--C
Q 011202 175 RPELRLEGLAHKVLQWYLCRME-GWFAADAETISL---KSWD-------KEELL-PGGHGLMVRGYLPVINTLAKGL--D 240 (491)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~---~~~~-------~~~~~-~~~~~~~~~G~~~l~~~l~~gv--~ 240 (491)
...+|+..+.+.++.|+. ..+..+..+.+. ..+. ...+. ..-+..+.||....++.|..++ +
T Consensus 158 ----~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~ 233 (447)
T COG2907 158 ----KQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGR 233 (447)
T ss_pred ----HhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccce
Confidence 567888888988888875 344444444432 1111 11111 2234567799999999999876 4
Q ss_pred eecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCC
Q 011202 241 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 320 (491)
Q Consensus 241 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (491)
|.++++|..|..-.+++.++..+|++.++|.||+|+.+++...++ ++-++..++.+..+.|.. +...++.|..+.
T Consensus 234 i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~~Ys~-n~aVlhtd~~lm 308 (447)
T COG2907 234 IETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGALRYSA-NTAVLHTDASLM 308 (447)
T ss_pred eecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhhhhhh-ceeEEeeccccc
Confidence 999999999999888888888889999999999999988864432 222344556888888844 445566666554
Q ss_pred C
Q 011202 321 P 321 (491)
Q Consensus 321 ~ 321 (491)
|
T Consensus 309 P 309 (447)
T COG2907 309 P 309 (447)
T ss_pred c
Confidence 4
No 30
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=9.1e-24 Score=194.52 Aligned_cols=407 Identities=19% Similarity=0.208 Sum_probs=248.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCc--EEEEeeCCCCcceeee-cCCCCceeecccceeeCCCCC-CcHHHHHHHc
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFK--VVLLESRDRVGGRVHT-DYSFGFPVDLGASWLHGVCQE-NPLAPVISRL 100 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~--V~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~~-~~~~~l~~~l 100 (491)
..+.++|+|||||++||++||+|++++.+ |+|+|+.+++||.++| ..-+++.||.|+..+.+.... -...+++.+|
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 45678999999999999999999999765 5669999999999999 667899999999988754321 2478999999
Q ss_pred CCCee--eccCCCcccccCCCcceeeecCCCCccChHHH--------HHHHHHHHHHHHHHHHhh-hcCCCCCCHHHHHH
Q 011202 101 GLPLY--RTSGDNSVLYDHDLESYALFDMDGNQVPQELV--------TKVGEAFESILKETDKVR-EEHDEDMSIQRAIS 169 (491)
Q Consensus 101 g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 169 (491)
|++.. +......-..+ .+..........|..+. ......+..++.+..+.. .....|.+++.|+
T Consensus 88 Gl~~e~~~i~~~~paakn----r~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~- 162 (491)
T KOG1276|consen 88 GLEDELQPIDISHPAAKN----RFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFA- 162 (491)
T ss_pred CccceeeecCCCChhhhh----eeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHH-
Confidence 99632 22221110000 00011111111111110 111222233333322221 3345678888875
Q ss_pred HHHccChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccchhccc-ccc--------c-----------------------
Q 011202 170 IVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWD-KEE--------L----------------------- 216 (491)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~-~~~--------~----------------------- 216 (491)
+.+|++++.+..+.++. +.|+.+++.+|..... ..+ +
T Consensus 163 ----------~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~ 232 (491)
T KOG1276|consen 163 ----------RRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSA 232 (491)
T ss_pred ----------HHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhh
Confidence 45677888888888865 6999999998875322 100 0
Q ss_pred --cc--CCccccccchHHHHHHHhc-----cCCeecCceeEEEEec-CCcEEEEE--cCCc-EEEcCEEEEecchhhhcc
Q 011202 217 --LP--GGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRH-YIGVKVTV--EGGK-TFVADAVVVAVPLGVLKA 283 (491)
Q Consensus 217 --~~--~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~-~~~v~v~~--~~g~-~~~ad~VI~a~p~~~l~~ 283 (491)
.. -..+...+|+..+.+++.+ .+.|..+-++..+... .++|.+++ .+++ ....+++..|.|+..+..
T Consensus 233 ~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ 312 (491)
T KOG1276|consen 233 QAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK 312 (491)
T ss_pred hhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh
Confidence 00 1123466888888888865 3467778888888764 44465554 4443 345566666888877655
Q ss_pred CcccccCCCchHHHHHHhhcCCCcccEEEEEecCC-CCCCCccceeecCC--CCc---c-eeeeccccc--CCceEEEEE
Q 011202 284 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDT--SYG---C-SYFLNLHKA--TGHCVLVYM 354 (491)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~g~~~~~--~~~---~-~~~~~~~~~--~~~~~l~~~ 354 (491)
++ +.+.+...+.+.+++|.+...|.+.|.++ .-.+-..+|.+.+. ... . .+|.+..-+ .+...++++
T Consensus 313 ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm 388 (491)
T KOG1276|consen 313 LL----RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVM 388 (491)
T ss_pred hc----cccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEE
Confidence 43 33455567788899999999898888764 22222334555552 111 1 223222111 112245555
Q ss_pred eccchhHHh--hcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCC--hhhHHHhcCCc--Cc
Q 011202 355 PAGQLARDI--EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS--HDLYERLRIPV--DN 428 (491)
Q Consensus 355 ~~~~~~~~~--~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~--~~~~~~~~~p~--~~ 428 (491)
+.+.-...+ ...+++|+++.+.+.|.+++..-.+|....++.|.. +...| ..|+. .+......+.. .+
T Consensus 389 ~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~---ciPqy---~vGh~~~le~a~~~l~~~~g~~ 462 (491)
T KOG1276|consen 389 MGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN---CIPQY---TVGHDDVLEAAKSMLTDSPGLG 462 (491)
T ss_pred ecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh---cccce---ecchHHHHHHHHHHHHhCCCCc
Confidence 444333333 455899999999999999997555676666666642 11222 34442 12223333333 49
Q ss_pred EEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 429 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 429 l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
|+++|.++.. -++..+|.||+++|.++.
T Consensus 463 l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 463 LFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 9999999742 378899999999998764
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=193.79 Aligned_cols=240 Identities=18% Similarity=0.145 Sum_probs=139.2
Q ss_pred cccCCccccccchHHHHHHHhc-----cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhhhccCccccc
Q 011202 216 LLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE 289 (491)
Q Consensus 216 ~~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~ 289 (491)
...+++.|+.||+..+..++++ |.+|.+++.|++|..++++ ++|.++||+++.++.||+++.++.+-..+.. .
T Consensus 251 ~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp-~ 329 (561)
T KOG4254|consen 251 GHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP-G 329 (561)
T ss_pred ccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC-C
Confidence 3467889999999999999875 7799999999999998877 6899999999999999999988876422221 2
Q ss_pred CCCchHH-HHHHhhcCCCc--ccEEEEEecCCC---CCCCccceee------------cCC-----CCcceee-------
Q 011202 290 PRLPDWK-EAAIDDLGVGI--ENKIIMHFDKVF---WPNVEFLGVV------------SDT-----SYGCSYF------- 339 (491)
Q Consensus 290 ~~l~~~~-~~~~~~~~~~~--~~~v~~~~~~~~---~~~~~~~g~~------------~~~-----~~~~~~~------- 339 (491)
..+|+.. .+.++.+.... ....++.....- .++..+.-.. .+. .....++
T Consensus 330 e~LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~l 409 (561)
T KOG4254|consen 330 EALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSL 409 (561)
T ss_pred ccCCchhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccccc
Confidence 2344443 12222222111 112233322100 1111000000 000 0011111
Q ss_pred ecccccCCceEEEEEeccchhHHhh-------cCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccC----------CCCC
Q 011202 340 LNLHKATGHCVLVYMPAGQLARDIE-------KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWG----------TDAN 402 (491)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~----------~~~~ 402 (491)
++.-.|++++++..++.+.. ..|. +..+++..+++++.+++++|++...+......-. ...+
T Consensus 410 Dptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~ 488 (561)
T KOG4254|consen 410 DPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNI 488 (561)
T ss_pred CCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcc
Confidence 11223677888777765544 2333 3346779999999999999998765443321111 0111
Q ss_pred CCcccccCC--CCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 011202 403 SLGSYSYDT--VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 403 ~~g~~~~~~--~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~ 461 (491)
..++...+. ..........+++|++|||+|||.+.+ +|++.++. |..+|...+..
T Consensus 489 ~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afP--GgGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 489 FHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFP--GGGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred cCcccccccccccCCccccccCCCCCCceEEecCCCCC--CCCccccc--hhHHHHHHhhh
Confidence 111111110 011112334568999999999999977 34665555 88888866553
No 32
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=5.4e-23 Score=197.06 Aligned_cols=414 Identities=19% Similarity=0.125 Sum_probs=217.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC-CCCceeecccceeeCCCCCCcHHHHHHHcCCCeeec
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (491)
++|+|+|||++||+||++|+++|++|+|+|+++++||++.|.+ .+|.+.|+|-|.|+++ +.++..++++++......
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~--Y~n~~~ll~~~~~~~~~~ 78 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGC--YYNLLTLLKELPIEDRLQ 78 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechh--HHHHHHHhhhCCchheee
Confidence 4799999999999999999999999999999999999999965 5688999999999865 578899999998763221
Q ss_pred cCCCcccccCC------CcceeeecC-----------CCCccChHHHHHHHHHHHHHHHH-H-HHhhhcCCCCCCHHHHH
Q 011202 108 SGDNSVLYDHD------LESYALFDM-----------DGNQVPQELVTKVGEAFESILKE-T-DKVREEHDEDMSIQRAI 168 (491)
Q Consensus 108 ~~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 168 (491)
.......+... ..++..... .....+.. .......++... + ........++.++.+|+
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l 155 (485)
T COG3349 79 LREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRR---EKIRFVLRLGDAPIGADRSLRELDKISFADWL 155 (485)
T ss_pred hHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHH---HHhHHhhccccccchhHHHHHHHhcccHHHHH
Confidence 11111111000 000000000 00000000 000000111000 0 11122334567888887
Q ss_pred HHHHccChhhhhhhhHHHHHHHHHHhhhhhhcCCccccchhccc----cccccc--CC-ccccccch-----HHHHHHHh
Q 011202 169 SIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD----KEELLP--GG-HGLMVRGY-----LPVINTLA 236 (491)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~--~~-~~~~~~G~-----~~l~~~l~ 236 (491)
...-.+. ......|...... ..+ ..++..+...+. ...... .. ...+.++. ..+.+.+.
T Consensus 156 ~~~g~~~-~~~k~~~~~~~~~-------l~f-~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~ 226 (485)
T COG3349 156 KEKGARE-GAYKAAFAPIALA-------LTF-IDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIP 226 (485)
T ss_pred HHhCCCc-hhHHHHHHHHHHh-------hcc-cCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhcc
Confidence 6522111 1111111111111 111 122222221111 000000 00 01122221 23444554
Q ss_pred -ccCCeecCceeEEEEecC---C--cEEEEEcCCc---EEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCc
Q 011202 237 -KGLDIRLGHRVTKITRHY---I--GVKVTVEGGK---TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI 307 (491)
Q Consensus 237 -~gv~i~~~~~V~~I~~~~---~--~v~v~~~~g~---~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (491)
.|.+++...+|..|.... . .+++... +. ...++.++.+...+.++..+... ..+....+.+..+..-+
T Consensus 227 ~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~--W~~~~~f~~ly~l~~~p 303 (485)
T COG3349 227 ERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSE--WPKWSNFDGLYGLRLVP 303 (485)
T ss_pred ccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCccc--ccccccccccccccccc
Confidence 388999999999998654 2 2455444 43 33445556665555554332211 11122234556667778
Q ss_pred ccEEEEEecCCCC-CCC-c---cceee-cC-CCCcceeeec------ccccCCceEEEEEeccchhHHhhcCCHHHHHHH
Q 011202 308 ENKIIMHFDKVFW-PNV-E---FLGVV-SD-TSYGCSYFLN------LHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 374 (491)
Q Consensus 308 ~~~v~~~~~~~~~-~~~-~---~~g~~-~~-~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~ 374 (491)
..++.+.|+...| ... . +.... .+ ......++.. +.++.....+-.. -.+...|...+++++...
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~--~~~~~~~~~~~~~~~~a~ 381 (485)
T COG3349 304 VITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKV--LAPGWPFLFESDEAIVAT 381 (485)
T ss_pred eeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhh--hcccccccccchhhHHHH
Confidence 8899999985332 211 0 00000 00 0000001000 0001000000000 012344566788999999
Q ss_pred HHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHH
Q 011202 375 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 454 (491)
Q Consensus 375 ~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~a 454 (491)
..+++...+|...... .|.+.-....+.....+|. ...+|...+|++|++++||++-..+.++||+|..||+.|
T Consensus 382 ~e~~~~~~vP~~~~a~-----~~~~~i~~~q~~~~~~pgs-~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~A 455 (485)
T COG3349 382 FEKELYELVPSLAEAK-----LKSSVLVNQQSLYGLAPGS-YHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLA 455 (485)
T ss_pred HHHHhhhcCCchhccc-----ccccceeccccccccCCCc-cccCCCCCCCccchhhccceeecCCcCccchhhhhHHHH
Confidence 9999999888754332 1111111111121122333 356788899999999999999988889999999999999
Q ss_pred HHHHHHHHHHHhC
Q 011202 455 AEDCRMRVLERYG 467 (491)
Q Consensus 455 A~~i~~~l~~~~~ 467 (491)
|+.|+..+...-.
T Consensus 456 A~~v~~~~~~~~~ 468 (485)
T COG3349 456 ANAILDNLGHHAP 468 (485)
T ss_pred HHHHHHhhhhcCc
Confidence 9999987765444
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.80 E-value=1.8e-17 Score=158.72 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=138.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCce-eecccceeeCCCCCCcHHHHHHHcC-CCee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (491)
++||+|||||++||++|+.|++.|.+|+|+|+++.+||.|.+....+.. .+.|+|+++. ....+.+++.++. ....
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~~~~ 78 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT--NNQYVWDYISPFFELNNY 78 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec--CcHHHHHHHHhhccccce
Confidence 4699999999999999999999999999999999999999987666654 4799999984 3455667766652 1111
Q ss_pred eccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCHHHHHHHHHccChhhhhhhh
Q 011202 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGL 183 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (491)
. ......+.+....+++.......+.. ....+ .+...+...... .....++.++... ....+
T Consensus 79 ~--~~~~~~~~g~~~~~P~~~~~i~~l~~---~~~~~---~~~~~l~~~~~~~~~~~~~~~~e~~d~--------~~~~~ 142 (377)
T TIGR00031 79 Q--HRVLALYNNLDLTLPFNFNQFRKLLG---VKDAQ---ELQNFFNAQFKYGDHVPLEELQEIADP--------DIQLL 142 (377)
T ss_pred e--EEEEEEECCeEEccCCCHHHHHHhcc---cchHH---HHHHHHHHHhhcccCCCCCCHHHHHHH--------HHHHH
Confidence 1 11111222221111110000000000 00111 111111111110 1111345554421 13356
Q ss_pred HHHHHHHHHHhhh-hhhcCCccccchhcccc---------cccccCCccccccchHHHHHHHhc--cCCeecCceeEEEE
Q 011202 184 AHKVLQWYLCRME-GWFAADAETISLKSWDK---------EELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKIT 251 (491)
Q Consensus 184 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~---------~~~~~~~~~~~~~G~~~l~~~l~~--gv~i~~~~~V~~I~ 251 (491)
++.+.+.++.+.. ..++.++++++...... ......-.++|.+|+..+.+.|.+ +++|++|+.+..++
T Consensus 143 G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~ 222 (377)
T TIGR00031 143 YQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLK 222 (377)
T ss_pred HHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccceee
Confidence 6777777776644 47788888887664431 111223356899999999999986 59999999888887
Q ss_pred ecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 252 RHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 252 ~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
.+++++.+ .++ .+. +.||.|.|++.+
T Consensus 223 ~~~~~~~~--~~~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 223 DKDSQLHF--ANK-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred ccccceee--ccc-ccc-CcEEEecCchHH
Confidence 65554433 233 333 889999998764
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.74 E-value=1.5e-16 Score=156.26 Aligned_cols=232 Identities=15% Similarity=0.162 Sum_probs=136.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC--------------------Cceeeccccee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--------------------GFPVDLGASWL 84 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~ 84 (491)
|.+.+||+|||+|++|+.+|..|+++|++|+++|+++..||+.+|.+.. .+.+|+.++.+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 4567999999999999999999999999999999999999999986432 23344555544
Q ss_pred eCCCCCCcHHHHHHHcCCCeeecc--CCCcccccCCCcceeeecCCCCccChHHHHH---------HHHHHHHHHHHHHH
Q 011202 85 HGVCQENPLAPVISRLGLPLYRTS--GDNSVLYDHDLESYALFDMDGNQVPQELVTK---------VGEAFESILKETDK 153 (491)
Q Consensus 85 ~~~~~~~~~~~l~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 153 (491)
. ....+.+++.+.++...-.. -+..+.+..+ ......|....+. .+..+.+|+..+.+
T Consensus 81 ~---~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~--------g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~ 149 (443)
T PTZ00363 81 M---ASGELVKILLHTDVTRYLEFKVIDGSYVYQKE--------GKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSN 149 (443)
T ss_pred e---cCChHHHHHhhcCccceeeeEEeceEEEEecC--------CeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHh
Confidence 3 34566777777776532111 1111111000 0011112211111 12234445554443
Q ss_pred hhhcC--------CCCCCHHHHHHHHHccChhhhhhhhHHHHHHHHHHhhhhh----hcCCccccchhc---ccc--ccc
Q 011202 154 VREEH--------DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGW----FAADAETISLKS---WDK--EEL 216 (491)
Q Consensus 154 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~---~~~--~~~ 216 (491)
..... .+..++.+|+..+ ++.+...+.+...+... +...+...++.. +.. ...
T Consensus 150 ~~~~~~~~~~~~~~d~~T~~d~L~~~----------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~ 219 (443)
T PTZ00363 150 YDENDPETHKGLNLKTMTMAQLYKKF----------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY 219 (443)
T ss_pred hccCChhhhcccCcccCCHHHHHHHh----------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc
Confidence 32221 2346777776443 34444333222111111 212121111110 100 111
Q ss_pred ccCCccccccchHHHHHHHh-----ccCCeecCceeEEEEecCC-c-EEEEEcCCcEEEcCEEEEecc
Q 011202 217 LPGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHYI-G-VKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 217 ~~~~~~~~~~G~~~l~~~l~-----~gv~i~~~~~V~~I~~~~~-~-v~v~~~~g~~~~ad~VI~a~p 277 (491)
...+..++.+|++.+++++. .|++++++++|.+|..+++ + +.|++++|+++.|+.||+..+
T Consensus 220 g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 220 GKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred cCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 12345678899999999986 2889999999999998754 3 578899999999999998643
No 35
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.70 E-value=2.5e-15 Score=148.82 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=60.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCcceeeecC--CCCceeecccceeeCCCCCCcHHHHHH
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVIS 98 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~ 98 (491)
...+++|+|||||++||+||++|++. |++|+|+|+++.+||++.+.. .+|+.++.|.+. . .....++++++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~--~~y~~l~~ll~ 95 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-E--NHFECLWDLFR 95 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-c--chHHHHHHHHH
Confidence 34568999999999999999999995 689999999999999998743 678998887663 2 23456788887
Q ss_pred HcC
Q 011202 99 RLG 101 (491)
Q Consensus 99 ~lg 101 (491)
.++
T Consensus 96 ~ip 98 (576)
T PRK13977 96 SIP 98 (576)
T ss_pred hcc
Confidence 763
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.70 E-value=2.9e-17 Score=116.86 Aligned_cols=68 Identities=35% Similarity=0.572 Sum_probs=60.4
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHc
Q 011202 33 VIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (491)
Q Consensus 33 IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (491)
|||||++||+||+.|+++|++|+|+|+++++||++++...+++.+|.|++++......+.+.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 89999999999999999999999999999999999998889999999999998754456788888875
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=141.28 Aligned_cols=59 Identities=24% Similarity=0.414 Sum_probs=49.1
Q ss_pred CCccccc-cchHHHHHHHhc-----cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecc
Q 011202 219 GGHGLMV-RGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 219 ~~~~~~~-~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 277 (491)
.|..+|. ....+++++|.+ ||+++++++|.+|+.++.++.+.+++|+++.||.+|+|+.
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 3444555 566777777643 9999999999999999988999999998999999999985
No 38
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4.5e-13 Score=113.54 Aligned_cols=68 Identities=25% Similarity=0.459 Sum_probs=58.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
...||+|||||+|||+|||+|+++|.+|+|+|++..+||-++ .|++.|+...-..+...+++++|++.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~y 96 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRY 96 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCcc
Confidence 467999999999999999999999999999999999998776 36666765555677888999998874
No 39
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.48 E-value=1.2e-11 Score=122.34 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=41.5
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
+.+.+.+ |++++++++|++++.+++++.|++++|+++.+|.||.|...+.
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 4444433 8899999999999998888888888888899999999987654
No 40
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=3.1e-13 Score=121.00 Aligned_cols=221 Identities=14% Similarity=0.268 Sum_probs=125.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCC--CCceee-cccceeeCCCCCCcHHHHHHHcCC-C
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFPVD-LGASWLHGVCQENPLAPVISRLGL-P 103 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~d-~G~~~~~~~~~~~~~~~l~~~lg~-~ 103 (491)
++|++|||||++|+..|..|++.|++|.|+||.+++||.|.+..- .|..++ .|+|.|| .+...+++.+..+-. .
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFH--T~~~~Vwdyv~~F~e~~ 78 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH--TDNKRVWDYVNQFTEFN 78 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceee--cCchHHHHHHhhhhhhh
Confidence 479999999999999999999999999999999999999999654 566555 8999999 455677777766421 1
Q ss_pred eeeccCCCcccccCCCccee-----eecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhh
Q 011202 104 LYRTSGDNSVLYDHDLESYA-----LFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPEL 178 (491)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (491)
..++.. .-..++.....+ +..-.|....+.... .++.... ......+..++++-.
T Consensus 79 ~Y~hrV--la~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~-------~~i~~~~-~~~~~~~~q~~ee~a---------- 138 (374)
T COG0562 79 PYQHRV--LALVNGQLYPLPFNLNTINQLFGKNFTPDEAR-------KFIEEQA-AEIDIAEPQNLEEQA---------- 138 (374)
T ss_pred hhccce--eEEECCeeeeccccHHHHHHHhCccCCHHHHH-------HHHHHhh-ccccccchhhhhhHH----------
Confidence 111110 000011000000 000011111111111 1111110 011111111222211
Q ss_pred hhhhhHHHHHHHHHHhh-hhhhcCCccccchhccc---------ccccccCCccccccchHHHHHHHhc--cCCeecCce
Q 011202 179 RLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD---------KEELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHR 246 (491)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~---------~~~~~~~~~~~~~~G~~~l~~~l~~--gv~i~~~~~ 246 (491)
..-..+.+.+.++.+. ..-|+.+++++...... .......-.+.|.+|+-.+.+.|.+ .+++++|+.
T Consensus 139 -is~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd 217 (374)
T COG0562 139 -ISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTD 217 (374)
T ss_pred -HHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCc
Confidence 1122334444444432 34667777776654332 1122233456899999999999987 889999997
Q ss_pred eEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 247 VTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 247 V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
-..+..... .+.+..||.|.|++.+
T Consensus 218 ~~~~~~~~~----------~~~~~~VvytG~iD~~ 242 (374)
T COG0562 218 FFDVKDQLR----------AIPFAPVVYTGPIDAY 242 (374)
T ss_pred HHHHhhhhc----------ccCCCceEEecchHhh
Confidence 766643321 1455689999998764
No 41
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.47 E-value=2e-12 Score=128.59 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
+++||+|||||++|++||+.|+++|++|+|+||.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999887754
No 42
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.47 E-value=4.1e-13 Score=131.16 Aligned_cols=43 Identities=35% Similarity=0.368 Sum_probs=36.2
Q ss_pred ccCCeecCceeEEEEecCCcEE-EEEcCCcEEEcCEEEEecchhh
Q 011202 237 KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.|++++.+++|++|..++++|. |.+.+|+ +.+|.||+|+.++.
T Consensus 160 ~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 160 AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 3899999999999999999986 9999996 99999999998754
No 43
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.47 E-value=1.5e-11 Score=121.46 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=41.3
Q ss_pred HHHHHhc-c-CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~-g-v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
|.+.+.+ | ++++++++|++|+.+++++.|++.+|+++.+|.||.|...+.
T Consensus 112 L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 112 LWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 4444443 4 899999999999988888888888998999999999987654
No 44
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.46 E-value=2.4e-11 Score=121.24 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=37.4
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 22 GKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 22 ~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
.+++...+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 12 ~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 12 PSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 344567899999999999999999999999999999998754
No 45
>PRK09126 hypothetical protein; Provisional
Probab=99.46 E-value=1.3e-11 Score=122.22 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHHHHh--ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~--~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
+.+.+. .|++++++++|++++.+++.+.|.+++|+++.+|.||.|...+..
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 445553 388999999999999888888888888989999999999986543
No 46
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.44 E-value=3.9e-11 Score=119.16 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 231 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 231 l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
+.+.+.+ |++++++++|.+|+.+++++.|++.+|+++.+|.||.|...+...
T Consensus 118 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 118 LLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchh
Confidence 4444443 789999999999999888888888899889999999999876543
No 47
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.44 E-value=2.8e-11 Score=120.42 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=35.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+||+|||||++|+++|++|++.|++|+|+||++.+|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 699999999999999999999999999999987666444
No 48
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.43 E-value=4.8e-11 Score=117.68 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+++||+|||||++|++||+.|+++|++|+|+||.+.+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 6799999999999999999999999999999999999965543
No 49
>PRK10015 oxidoreductase; Provisional
Probab=99.41 E-value=2.2e-11 Score=121.02 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=36.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.++||+|||||++|++||+.|+++|++|+|+||.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 468999999999999999999999999999999887763
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.41 E-value=5.5e-11 Score=117.02 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=38.1
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.|++++++++|++|+.+++++.|.+++| ++.+|.||+|+..+.
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 4899999999999999888888888888 799999999998753
No 51
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.41 E-value=1.1e-10 Score=114.77 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=43.4
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEc-CCcEEEcCEEEEecchhhhcc
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLKA 283 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~ad~VI~a~p~~~l~~ 283 (491)
|.+++.+ +++++++++|+.++.+++.+.++++ +|++++||.||-|-..+...+
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR 165 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVR 165 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHH
Confidence 4455543 3799999999999999998888888 999999999999988765443
No 52
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.40 E-value=8.3e-11 Score=116.03 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=42.8
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.|.+.+.+ |++++++++|++|+.+++++.|++++|+++.||.||.|.+.+.
T Consensus 110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 35555554 7899999999999988888888888888899999999998764
No 53
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.39 E-value=2e-10 Score=113.49 Aligned_cols=49 Identities=20% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHhc-c-CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~-g-v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
+.+.+.+ | ++++ +++|++|+.+++++.|++++|+++.+|.||.|...+.
T Consensus 117 L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 117 LWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 4455544 5 7788 9999999988888888888888899999999998754
No 54
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.39 E-value=2.8e-12 Score=124.84 Aligned_cols=40 Identities=38% Similarity=0.599 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
|||+|||||+|||+||+.|++.|.+|+|+||++++|-++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil 40 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKIL 40 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccccee
Confidence 6999999999999999999999999999999999985543
No 55
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.39 E-value=1.3e-10 Score=114.59 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=39.4
Q ss_pred HHHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 230 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 230 ~l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
.+.+.+. .|++++.+++|.+|+.+++++.|.++++ ++.+|+||+|+..+
T Consensus 150 ~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 150 ALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 3444333 3899999999999998888888887777 79999999999864
No 56
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.38 E-value=1.2e-10 Score=115.01 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.+.+.+.+ +...+++++|.+++.+++++.|++++|+++++|.||.|...+.
T Consensus 116 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 116 ALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 34455544 3334889999999998888989888898999999999987654
No 57
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.38 E-value=6.8e-11 Score=117.35 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|.+.+.+ +++++++++|++|+.+++.+.|++++|+++.||.||.|...+..
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 5555543 68999999999999888888899999999999999999986543
No 58
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.38 E-value=3e-10 Score=112.92 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=41.5
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
|.+.+.+ |++++++++|++|+.+++++.|++.+|+++.+|.||.|...+.
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 4444433 8899999999999998888888888888999999999987654
No 59
>PRK08013 oxidoreductase; Provisional
Probab=99.38 E-value=1.4e-10 Score=114.81 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=43.2
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
|.+++.+ +++++++++|++|+.+++.+.|++.+|+++++|.||-|-..+...
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 4455544 789999999999998888888888899999999999998876543
No 60
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.37 E-value=2.1e-12 Score=110.44 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=46.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
..+||+|||||++||+||++|+++|++|+|||++..+||.++. |++.|+...-......+++++|++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----------Gg~lf~~iVVq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----------GGMLFNKIVVQEEADEILDELGIPY 83 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----------CTT---EEEETTTHHHHHHHT---
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc----------cccccchhhhhhhHHHHHHhCCcee
Confidence 4689999999999999999999999999999999999987653 4444433223455677888888764
No 61
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.36 E-value=2.1e-10 Score=113.46 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=42.6
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 230 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 230 ~l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
.|.+.+.+ |++++++++|++++.+++++.|.+++|+++.+|.||.|...+..
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 34454442 78999999999999888888888888889999999999987653
No 62
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.35 E-value=1.2e-10 Score=110.44 Aligned_cols=37 Identities=41% Similarity=0.531 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
+||+|||||++||++|+.|++.|.+|+|+|+.+.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999877653
No 63
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.35 E-value=2.8e-10 Score=112.83 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=41.6
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
+.+.+.+ |++++++++|++|+.+++++.|++++|+++.+|.||.|...+.
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4454443 7899999999999988888888888888899999999998654
No 64
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.33 E-value=2.5e-10 Score=113.45 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=33.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEeeCCCCcc
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDRVGG 65 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~-G~-~V~vlE~~~~~GG 65 (491)
+.++||+|||||++|+++|++|++. |. +|+|+||.. +|+
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 3578999999999999999999995 95 899999965 443
No 65
>PRK06847 hypothetical protein; Provisional
Probab=99.33 E-value=4.5e-10 Score=110.48 Aligned_cols=43 Identities=44% Similarity=0.411 Sum_probs=38.9
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
|++++++++|++|+.+++++.|.+.+|+++.+|.||.|...+.
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 8899999999999988888888888998999999999998654
No 66
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.32 E-value=2.3e-11 Score=117.23 Aligned_cols=43 Identities=33% Similarity=0.505 Sum_probs=40.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s 69 (491)
+++||+|||||+.|+++|+.|++.+ .+|+|+||.+.+|-..++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 5789999999999999999999998 999999999999987776
No 67
>PRK06184 hypothetical protein; Provisional
Probab=99.32 E-value=5.9e-10 Score=113.73 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCcEEEEE---cCCcEEEcCEEEEecchhhhc
Q 011202 231 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 231 l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~l~ 282 (491)
|.+.+.+ |++++++++|.+|+.+++++.+++ .+++++++|+||.|...+...
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHH
Confidence 4444443 889999999999999888887766 556789999999999876643
No 68
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.31 E-value=5.8e-10 Score=109.83 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
+.+++.+ +++++++++|++++.+++++.|++++|+++++|.||.|...+...
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 4444443 689999999999999888888999999999999999999876543
No 69
>PRK07588 hypothetical protein; Provisional
Probab=99.31 E-value=6.1e-10 Score=110.12 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhcc
Q 011202 232 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 283 (491)
Q Consensus 232 ~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 283 (491)
.+++..+++++++++|++|+.+++++.|++++|+++.+|.||.|...+...+
T Consensus 110 ~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 110 YTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 3444456899999999999998888999999998899999999998766443
No 70
>PRK11445 putative oxidoreductase; Provisional
Probab=99.30 E-value=1.7e-09 Score=105.06 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=38.5
Q ss_pred HHHhccCCeecCceeEEEEecCCcEEEEE-cCCc--EEEcCEEEEecchhh
Q 011202 233 NTLAKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLGV 280 (491)
Q Consensus 233 ~~l~~gv~i~~~~~V~~I~~~~~~v~v~~-~~g~--~~~ad~VI~a~p~~~ 280 (491)
+....|+++++++.|.+|+.+++++.|.+ .+|+ +++||.||.|.....
T Consensus 107 ~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 107 SLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred HHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 33445889999999999998888887775 5664 689999999998654
No 71
>PRK06834 hypothetical protein; Provisional
Probab=99.30 E-value=1.4e-09 Score=109.73 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=41.3
Q ss_pred HHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 233 NTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 233 ~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
+.+.+ |++++++++|++|+.+++++.|++.+|+++.+|+||.|...+..
T Consensus 108 ~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 108 EWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 34433 88999999999999998888888888888999999999987654
No 72
>PRK08244 hypothetical protein; Provisional
Probab=99.29 E-value=5.2e-10 Score=113.87 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
++||+|||||++||++|..|++.|++|+|+||++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 58999999999999999999999999999999865
No 73
>PRK07045 putative monooxygenase; Reviewed
Probab=99.29 E-value=6.3e-10 Score=109.88 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=40.3
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
+.+.+.+ |++++++++|++|+.++++ +.|+.++|+++.+|.||.|......
T Consensus 112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 4444432 6899999999999987655 3678888989999999999887654
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.29 E-value=1.1e-10 Score=106.72 Aligned_cols=42 Identities=36% Similarity=0.521 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|+++|.+|+|+||+..+||.++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 478999999999999999999999999999999999987643
No 75
>PRK06753 hypothetical protein; Provisional
Probab=99.27 E-value=9.5e-10 Score=108.10 Aligned_cols=44 Identities=23% Similarity=0.139 Sum_probs=38.5
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
..+++++++|++|+.+++++.|++++|+++.+|.||-|-..+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 45799999999999888889999999989999999999886654
No 76
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.27 E-value=8.4e-10 Score=99.90 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCccccccchHHHHHHHhc-cCCeecCceeEEEEe---cCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 219 GGHGLMVRGYLPVINTLAK-GLDIRLGHRVTKITR---HYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 219 ~~~~~~~~G~~~l~~~l~~-gv~i~~~~~V~~I~~---~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
+|.-+.......+.+.+.+ |+.++-+..|..++. ++..+.|.|.+|..+.++++|+|+.++..+
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 3433444444555555554 889999999999984 344688999999889999999999998764
No 77
>PRK06185 hypothetical protein; Provisional
Probab=99.27 E-value=1e-09 Score=109.11 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=34.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.+++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4678999999999999999999999999999999753
No 78
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.26 E-value=1.6e-09 Score=107.08 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=35.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
.+++||+|||||++||++||+|++.|.+|+|+|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 468899999999999999999999999999999965444
No 79
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.25 E-value=1.5e-10 Score=106.27 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++||+||+.|++.|++|+|+|++..+||.++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~ 65 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW 65 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence 578999999999999999999999999999999999987553
No 80
>PRK05868 hypothetical protein; Validated
Probab=99.25 E-value=3.1e-09 Score=103.95 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=41.4
Q ss_pred HhccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 235 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 235 l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
+..|++++++++|++|+.+++++.|++++|+++++|.||-|-..+...
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchH
Confidence 345889999999999998888899999999999999999998876543
No 81
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.24 E-value=6.1e-11 Score=117.13 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=37.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (491)
++||+|||||++|+++|++|+++ |++|+|+||+..+|+.+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~ 45 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTG 45 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccc
Confidence 58999999999999999999999 9999999998777765544
No 82
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.22 E-value=2.2e-09 Score=105.28 Aligned_cols=51 Identities=2% Similarity=0.055 Sum_probs=41.0
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
|.+++.+ +++++++++|++|..+++++.|.++++ ++++|.||-|-..+...
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 110 LLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchh
Confidence 4455544 478999999999999888888888777 89999999998876543
No 83
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.22 E-value=2.4e-09 Score=107.12 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHhc----cCCeecCceeEEEEec-------CCcEEEEEcCCcEEEcCEEEEecchhhhcc
Q 011202 231 VINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGVLKA 283 (491)
Q Consensus 231 l~~~l~~----gv~i~~~~~V~~I~~~-------~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 283 (491)
|.+.+.+ +++++++++|.+|+.+ ++++.|++.+|++++||.||-|-..+...+
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 4555543 3789999999999753 356888889999999999999988765443
No 84
>PRK07190 hypothetical protein; Provisional
Probab=99.21 E-value=4.2e-09 Score=106.21 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=39.8
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
|++++++++|++|+.+++++.+.+.+|+++.|++||.|...+...
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHH
Confidence 899999999999999888888888888899999999999876543
No 85
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.20 E-value=6e-09 Score=107.48 Aligned_cols=38 Identities=37% Similarity=0.546 Sum_probs=35.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..++||+|||||++||++|+.|++.|++|+|+||++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 46789999999999999999999999999999998754
No 86
>PRK06996 hypothetical protein; Provisional
Probab=99.19 E-value=3.8e-09 Score=104.51 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCC---cEEEcCEEEEecc
Q 011202 230 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVP 277 (491)
Q Consensus 230 ~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p 277 (491)
.|.+++.+ |++++++++|++++.+++++.++..++ +++++|.||-|..
T Consensus 120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 35555544 789999999999998888888887754 5899999999966
No 87
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.19 E-value=9.3e-11 Score=117.04 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=36.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+||+|||||++||++|++|++.|++|+|+|+...+|..++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~ 41 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSF 41 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhee
Confidence 48999999999999999999999999999997666655544
No 88
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.18 E-value=4.2e-10 Score=113.31 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (491)
..++||+|||||++||++|++|+++ |.+|+|+|++ .+|+.+
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~-~~g~Ga 64 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD-LCGAGA 64 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC-cccccc
Confidence 3468999999999999999999998 8999999995 455433
No 89
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.18 E-value=8.2e-09 Score=102.00 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 67999999999999999999999999999999874
No 90
>PLN02463 lycopene beta cyclase
Probab=99.17 E-value=5.2e-09 Score=103.77 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=36.5
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.|++++ .++|.+|+.+++++.|++++|+++.||.||.|+....
T Consensus 127 ~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 127 NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 377875 6799999998888889999998999999999997643
No 91
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.17 E-value=5.1e-09 Score=107.71 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=35.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..++||+|||||++||++|..|++.|++|+|+||+..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 357899999999999999999999999999999987654
No 92
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.16 E-value=7.4e-10 Score=110.42 Aligned_cols=45 Identities=42% Similarity=0.559 Sum_probs=40.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+...++|+|||||++||+||.+|.+.|++|+|||+++.+||....
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 345689999999999999999999999999999999999987653
No 93
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.16 E-value=3.9e-10 Score=112.82 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=36.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA-S-FKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~-G-~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||+.|+++|+.|++. + .+|+|+||.+.+|..++
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS 87 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVAS 87 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhccc
Confidence 4579999999999999999999996 4 69999999876664443
No 94
>PRK06126 hypothetical protein; Provisional
Probab=99.15 E-value=8.1e-09 Score=106.57 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=33.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+..+||+|||||++||++|..|++.|++|+|+||++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3568999999999999999999999999999999763
No 95
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.14 E-value=9.1e-10 Score=115.83 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=41.8
Q ss_pred HHHHHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 229 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 229 ~~l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
..+.+.+.+|++++++++|++|+.+++++.|.+++|..+.+|.||+|+..+.
T Consensus 412 ~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 412 RALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 3344444347899999999999988888888888887778999999998764
No 96
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.14 E-value=1.1e-08 Score=100.97 Aligned_cols=32 Identities=41% Similarity=0.570 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+||+|||||++|++||+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999996
No 97
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.14 E-value=1.8e-08 Score=100.42 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4578999999999999999999999999999999964
No 98
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.14 E-value=2.6e-10 Score=101.77 Aligned_cols=41 Identities=41% Similarity=0.551 Sum_probs=32.5
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+++++++++|++|..++++|.|++.+++++.||+||+|+..
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 66799999999999999999999999988999999999984
No 99
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.4e-09 Score=100.04 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=34.4
Q ss_pred hcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 422 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 422 ~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
..|.++|+|.|||.....+. -+..|+..|..||..+.+.|.+
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhh
Confidence 67889999999999976422 5778999999999988887654
No 100
>PRK07236 hypothetical protein; Provisional
Probab=99.12 E-value=1.1e-09 Score=107.86 Aligned_cols=44 Identities=18% Similarity=0.075 Sum_probs=38.5
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
+++++++++|++|+.+++++.|++++|+++.+|.||.|-..+..
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 45799999999999988889999999999999999999776553
No 101
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.11 E-value=2.5e-08 Score=101.40 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=38.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
|.+++||+|||||++|+++|+.|++.|.+|+|+||++..+|..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 4567999999999999999999999999999999987666654
No 102
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.09 E-value=2.1e-10 Score=111.96 Aligned_cols=35 Identities=43% Similarity=0.563 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
+||+|||||++||++|..|+++|++|+||||++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 69999999999999999999999999999997653
No 103
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.09 E-value=2.8e-08 Score=96.07 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=53.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCcceeeecC--CCCceeecccceeeCCCCCCcHHHHHHHcC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (491)
+.++-|||+|+++|+||.+|.|. |.+|+|||+.+.+||.+-+.. ..||...-|-+. . .....+++|+..+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~--~~~eclwdLls~IP 78 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-E--FHYECLWDLLSSIP 78 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-c--chhHHHHHHHHhCC
Confidence 46789999999999999999986 569999999999999987643 346665444322 1 23455777777765
Q ss_pred C
Q 011202 102 L 102 (491)
Q Consensus 102 ~ 102 (491)
-
T Consensus 79 S 79 (500)
T PF06100_consen 79 S 79 (500)
T ss_pred C
Confidence 4
No 104
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.08 E-value=1.1e-07 Score=92.92 Aligned_cols=50 Identities=36% Similarity=0.339 Sum_probs=41.8
Q ss_pred HHHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
+.+.+.++..+++++.|.+|+..++.+.|++++|++++|+.||-|.++..
T Consensus 93 l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 93 LLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 44555556678999999999999888888999999999999999988543
No 105
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.08 E-value=3.1e-08 Score=102.56 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=34.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
||+|||||++||+||+.+++.|.+|+|+||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999988776643
No 106
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.07 E-value=1.4e-09 Score=107.75 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|.+.+.+ +++++++++|.+++.+++++.|++.+|+++.+|.||.|...+..
T Consensus 115 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 115 LLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 4555543 47899999999999888888888888988999999999887654
No 107
>PLN02697 lycopene epsilon cyclase
Probab=99.07 E-value=1.7e-08 Score=101.79 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
...+||+|||||++||++|+.|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 45799999999999999999999999999999984
No 108
>PLN02661 Putative thiazole synthesis
Probab=99.06 E-value=2.4e-09 Score=100.58 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++. |++|+|+||+..+||...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 478999999999999999999986 899999999999987544
No 109
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=7.5e-08 Score=99.11 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=36.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
..+||+|||||.+||+||..+++.|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 46899999999999999999999999999999987766633
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.03 E-value=4.3e-08 Score=96.91 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
||+|||||++|+++|+.|++.|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999887765
No 111
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.03 E-value=5.2e-08 Score=96.13 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
+||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 112
>PRK07538 hypothetical protein; Provisional
Probab=99.02 E-value=8.5e-08 Score=95.48 Aligned_cols=35 Identities=29% Similarity=0.578 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999997654
No 113
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.01 E-value=4.7e-09 Score=104.73 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (491)
+..+||+||||||+|+++|+.|++. |.+|+|+||.+.+|-.++.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~ 49 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN 49 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence 3567999999999999999999998 8999999997788766554
No 114
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.00 E-value=5.4e-09 Score=99.46 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=35.8
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
|+++++ ++|.+|+.+++.+.|.+.+++++.+|+||+|+...
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 778888 89999998888888888888899999999999763
No 115
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.00 E-value=8.3e-09 Score=103.78 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (491)
..++||+|||||+.|+++||+|++. |.+|+|+||.+.+|+..++
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 3568999999999999999999985 7899999998877765543
No 116
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.00 E-value=4e-09 Score=108.07 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.++||+|||||++|+++|+.|++.|++|+|+||++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 468999999999999999999999999999999765444
No 117
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.98 E-value=9.6e-09 Score=103.14 Aligned_cols=38 Identities=42% Similarity=0.666 Sum_probs=35.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCccee
Q 011202 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRV 67 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~~GG~~ 67 (491)
||+|||||++||+||+.++++| .+|+|+||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999888854
No 118
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.98 E-value=7.1e-09 Score=104.19 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=36.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeee
Q 011202 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (491)
+||+|||||++|+++|+.|++. |.+|+|+||.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 5999999999999999999997 9999999998877755544
No 119
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.97 E-value=8e-09 Score=103.10 Aligned_cols=36 Identities=50% Similarity=0.774 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
||+|||+|++||+||+.++++|.+|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999998
No 120
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.97 E-value=5e-09 Score=102.66 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+||+|||||++|+++|+.|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999664
No 121
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.97 E-value=1.6e-08 Score=102.87 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.++||+|||||++||+||+.+++.|.+|+|+||.+.+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 47899999999999999999999999999999999998854
No 122
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=8.7e-09 Score=100.91 Aligned_cols=44 Identities=45% Similarity=0.586 Sum_probs=40.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
.+..+|+|||||+|||++|..|.+.|++|+|+||.+.+||.-..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 35789999999999999999999999999999999999987764
No 123
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.95 E-value=3.4e-07 Score=95.14 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=36.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
..++||+|||||+.|+++|+.|++.|.+|+|+|+++..+|.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 35699999999999999999999999999999998765553
No 124
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.94 E-value=2.5e-07 Score=96.38 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDR 62 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~ 62 (491)
+...+||+|||||++||++|..|++. |.+|+|+|+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 45678999999999999999999995 999999999753
No 125
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.94 E-value=7.5e-09 Score=103.11 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhc
Q 011202 239 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 239 v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 282 (491)
..++++++|++|+.+++++.|++++|+++.+|.||.|...+...
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSAL 161 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHH
Confidence 46899999999998888899998999899999999999876643
No 126
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.94 E-value=2.5e-08 Score=97.11 Aligned_cols=228 Identities=18% Similarity=0.189 Sum_probs=119.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCC---------------------CCceeecccce
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS---------------------FGFPVDLGASW 83 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~---------------------~g~~~d~G~~~ 83 (491)
|...+||+|+|.|+.-...|..|++.|.+|+.+|+++..||..+|... ..|.+|+-+..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 457899999999999999999999999999999999999999988641 13667777776
Q ss_pred eeCCCCCCcHHHHHHHcCCCeeec--cCCCcccccCCCcceeeecCCCCccChHH---------HHHHHHHHHHHHHHHH
Q 011202 84 LHGVCQENPLAPVISRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQEL---------VTKVGEAFESILKETD 152 (491)
Q Consensus 84 ~~~~~~~~~~~~l~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 152 (491)
+. ....+-+++-+-++..+-. .-...+.+. ......+|... -...+..+.+|+..+.
T Consensus 81 l~---a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~---------~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~ 148 (438)
T PF00996_consen 81 LY---ARGPLVKLLISSGVTRYLEFKAVDGSYVYK---------NGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVA 148 (438)
T ss_dssp EE---TTSHHHHHHHHCTGGGGSEEEEESEEEEEE---------TTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHH
T ss_pred hh---ccCHHHHHHHhCCcccceEEEEcceeEEEe---------CCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHh
Confidence 65 3456667776666642210 001111111 11111122111 1122334455665555
Q ss_pred Hhhhc--------CCCCCCHHHHHHHHHccChhhhhhhhHHHHHHHHHHhhhhhhcCCc-ccc---ch---hccc--ccc
Q 011202 153 KVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADA-ETI---SL---KSWD--KEE 215 (491)
Q Consensus 153 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---s~---~~~~--~~~ 215 (491)
.+... .....++.+++.. .++.+...+.+...++-...... ... .+ ..+. ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~e~~~~----------f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgr 218 (438)
T PF00996_consen 149 NYEEDDPSTHKGLDPEKKTFQELLKK----------FGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGR 218 (438)
T ss_dssp HGCTTBGGGSTTG-TTTSBHHHHHHH----------TTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCC
T ss_pred hcccCCcchhhccccccccHHHHHHh----------cCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhc
Confidence 44321 1234566776543 24455544444322221111110 000 00 0000 011
Q ss_pred cccCCccccccchHHHHHHHhc-----cCCeecCceeEEEEecC-CcE-EEEEcCCcEEEcCEEEEe
Q 011202 216 LLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHY-IGV-KVTVEGGKTFVADAVVVA 275 (491)
Q Consensus 216 ~~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~-~~v-~v~~~~g~~~~ad~VI~a 275 (491)
+...++-+|.-|.++|++++.. |+...++++|.+|..++ +++ .|. .+|+++.|++||..
T Consensus 219 yG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 219 YGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGD 284 (438)
T ss_dssp CSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEE
T ss_pred cCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEEC
Confidence 2234566788888888888754 88999999999999854 444 454 48889999999954
No 127
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.93 E-value=3.6e-08 Score=99.77 Aligned_cols=42 Identities=43% Similarity=0.551 Sum_probs=37.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC--Cccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR--VGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~--~GG~~ 67 (491)
..++||+|||||++||+||+.|+++|.+|+|+||.+. .||.+
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 4578999999999999999999999999999999874 56644
No 128
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=6.3e-09 Score=105.82 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=37.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
|..++||+|||||++|+++|+.|+++|.+|+|+||++..+|.+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS 45 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTS 45 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCc
Confidence 5677999999999999999999999999999999987554443
No 129
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.91 E-value=1.3e-08 Score=100.23 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=34.5
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 32 IVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 32 ~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+|||||++||+||+.|++.|.+|+|+||++.+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 6999999999999999999999999999999987654
No 130
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.88 E-value=1.4e-07 Score=93.26 Aligned_cols=42 Identities=36% Similarity=0.520 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++|+.+|+.++-.|++|+++|+++...|..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 789999999999999999999999999999999988777654
No 131
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2e-08 Score=99.79 Aligned_cols=53 Identities=40% Similarity=0.556 Sum_probs=44.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCCCCcceeeecCCCCcee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPV 77 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~ 77 (491)
..+++||+|||||++||++|+.|.+.|.. ++||||++.+||.-+..+..+...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~ 58 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRL 58 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEE
Confidence 46789999999999999999999999998 999999999998765544444333
No 132
>PRK09897 hypothetical protein; Provisional
Probab=98.87 E-value=3.9e-08 Score=99.16 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCc-ceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVG-GRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~G-G~~~s 69 (491)
+++|+|||||++|+++|..|.+.+ .+|+|||+++.+| |...+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 468999999999999999999864 4899999999888 54443
No 133
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.86 E-value=2.7e-07 Score=86.81 Aligned_cols=36 Identities=44% Similarity=0.794 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
+.+|+|||||++||++|..|.|+|.+|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999997543
No 134
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.85 E-value=3.6e-08 Score=97.19 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 457999999999999999999999999999999874
No 135
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.85 E-value=7e-08 Score=81.75 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=37.9
Q ss_pred HHHHHhccCCe-ecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLAKGLDI-RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~~gv~i-~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+..++++ +...+|.+|...++++.|.+.+|..+.+|+||+|+..
T Consensus 107 ~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 44444445543 3567999999999999999999999999999999853
No 136
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.85 E-value=3.5e-08 Score=97.78 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCcEEEEE---cCCcEEEcCEEEEecchhhhcc
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVLKA 283 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~l~~ 283 (491)
|.+++.+ +++++++++|++++.+++++.+++ .+++++.+|.||-|-..+...+
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR 170 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLR 170 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHH
Confidence 4455543 678999999999998888877765 3345799999999988776544
No 137
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.85 E-value=1.1e-07 Score=97.46 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=38.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||+| +||+||...++.|.+|+|+||.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 358999999999 899999999999999999999999999765
No 138
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.80 E-value=7.2e-08 Score=98.39 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=37.0
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
|++++++++|.+|..+++.+.|.+++|+.+.+|++|+|+...
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 788999999999988777788888888889999999999864
No 139
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.79 E-value=7.5e-08 Score=97.20 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~-~~~GG~ 66 (491)
.++||+|||||++|+.||+.+++.|.+|+|+|++ +.+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 5699999999999999999999999999999997 467653
No 140
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=6.1e-08 Score=100.89 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.++||+|||||++||+||..+++.|.+|+|+||...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 468999999999999999999999999999999777653
No 141
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.79 E-value=2.4e-07 Score=95.81 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=40.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
...++||+|||+|++|++||+.++++|.+|+|+||++..||.+.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 34689999999999999999999999999999999998898765
No 142
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.79 E-value=3.7e-08 Score=99.70 Aligned_cols=41 Identities=39% Similarity=0.585 Sum_probs=35.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
++|+|||||++||++|..|.+.|++|++|||++.+||.-+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 57999999999999999999999999999999999997754
No 143
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.78 E-value=2.2e-07 Score=96.06 Aligned_cols=43 Identities=33% Similarity=0.503 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||++||+||+.++++|.+|+|+||....||.+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 3578999999999999999999999999999999999998764
No 144
>PRK07121 hypothetical protein; Validated
Probab=98.78 E-value=2.2e-07 Score=94.52 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.++++|.+|+|+||....||.+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 578999999999999999999999999999999998888553
No 145
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.77 E-value=1.1e-07 Score=94.67 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
.++||+|||+|.+||+||..++ .|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 5689999999999999999985 79999999999887764
No 146
>PTZ00367 squalene epoxidase; Provisional
Probab=98.77 E-value=1.4e-06 Score=89.03 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+..+||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4467899999999999999999999999999999964
No 147
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.77 E-value=1.4e-06 Score=84.98 Aligned_cols=36 Identities=33% Similarity=0.678 Sum_probs=33.7
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcc
Q 011202 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (491)
||+|||||++||++|+.|+++ |++|+|+|+.+..||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999987 999999999887775
No 148
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.76 E-value=1.1e-07 Score=97.20 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.2
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
|++++++++|.+|...++.+.|.+.+|+++.+|.||+|+...
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 778999999999998877788888888889999999999864
No 149
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.73 E-value=6.4e-07 Score=92.18 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||+|.+|++||+.+++.|.+|+|+||...+||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 4578999999999999999999999999999999998888653
No 150
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.72 E-value=1.8e-07 Score=95.91 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=37.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
..++||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 45789999999999999999999999999999998887763
No 151
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.72 E-value=1.3e-07 Score=97.12 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=36.6
Q ss_pred eecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 241 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 241 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
++++++|.+|+.+++++.|++++|+++.+|.||.|-..+..
T Consensus 209 i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 209 IRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred EEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 78899999999988899999999989999999999987653
No 152
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.71 E-value=2.6e-08 Score=99.20 Aligned_cols=40 Identities=45% Similarity=0.600 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
||+|||||++|++||+.+++.|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997643
No 153
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.70 E-value=2.6e-07 Score=93.42 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++|++||..|++.|.+|+|+|+ ..+||.|.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~ 43 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL 43 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 368999999999999999999999999999999 57888775
No 154
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.69 E-value=7.5e-07 Score=90.89 Aligned_cols=41 Identities=34% Similarity=0.575 Sum_probs=37.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+||||| +||+||+.+++.|.+|+|+||....||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 47899999999 999999999999999999999988888553
No 155
>PRK12839 hypothetical protein; Provisional
Probab=98.68 E-value=7.5e-07 Score=91.66 Aligned_cols=44 Identities=30% Similarity=0.470 Sum_probs=40.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
...++||+|||+|.+||+||+.|+++|.+|+|+||...+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 45688999999999999999999999999999999999998765
No 156
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.67 E-value=1.1e-06 Score=90.31 Aligned_cols=42 Identities=33% Similarity=0.616 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||+|.+||+||+.|++.|.+|+||||....||.+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 478999999999999999999999999999999988888653
No 157
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.67 E-value=3.9e-07 Score=92.68 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.+||+|||+|.+||+||..+++ |.+|+|+||.+..||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 6799999999999999999976 89999999988877643
No 158
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=4.7e-07 Score=94.29 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.++||+|||||++||+||..+++.|.+|+|+||....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 468999999999999999999999999999999876555
No 159
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=5.6e-07 Score=93.05 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcce
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR 66 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~ 66 (491)
++||+|||||++||+||+.++++| .+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 579999999999999999999874 799999998776663
No 160
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.63 E-value=8.6e-08 Score=91.65 Aligned_cols=40 Identities=33% Similarity=0.297 Sum_probs=33.0
Q ss_pred cCCeecCceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+++|+ ..+|++|..+++++ +|.+.+|+.+.+|.||+|+.+
T Consensus 110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 56664 67899999988885 899999999999999999987
No 161
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.62 E-value=5.3e-07 Score=91.48 Aligned_cols=39 Identities=41% Similarity=0.542 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.+||+|||||++||+||+.+++.|. |+|+||.+..||.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 4699999999999999999999997 99999988777643
No 162
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.62 E-value=7.8e-07 Score=89.65 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++||+|||||++||+||..+++.|.+|+|+||..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999975
No 163
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.3e-06 Score=90.43 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G---~~V~vlE~~~~~GG~~ 67 (491)
.++||+|||||++||+||+.+++.| .+|+|+||....||.+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 4689999999999999999999998 8999999988777643
No 164
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=9.5e-07 Score=90.85 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC-Ccce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~-~GG~ 66 (491)
..+||+|||||.+||+||+.+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 467999999999999999999 99999999999765 4444
No 165
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.59 E-value=4.1e-06 Score=80.44 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=70.6
Q ss_pred hhhhhhHHHHHHHHHHh-hhhhhcCCccccchhcccccccccCCccccccchHHHHHHHhc--cCCeecCceeEEE-Eec
Q 011202 178 LRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKI-TRH 253 (491)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~--gv~i~~~~~V~~I-~~~ 253 (491)
+...++++.+++.++.+ +...|+++.+.-++..........++.+.+.||..++.+.|.+ +.++ ++++|++| ...
T Consensus 76 L~~~gi~~~fi~Elv~a~tRvNYgQ~~~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~ 154 (368)
T PF07156_consen 76 LKENGISERFINELVQAATRVNYGQNVNIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRS 154 (368)
T ss_pred HHHCCCCHHHHHHHHHhheEeecccccchhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEecc
Confidence 56778888999888776 4567887643222222222222356778899999999999975 8889 99999999 444
Q ss_pred CCc---EEEEEcC--C-cEEEcCEEEEecchhh
Q 011202 254 YIG---VKVTVEG--G-KTFVADAVVVAVPLGV 280 (491)
Q Consensus 254 ~~~---v~v~~~~--g-~~~~ad~VI~a~p~~~ 280 (491)
+++ +.|+..+ + ....+|.||+|+|.+.
T Consensus 155 ~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 155 SDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred CCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 333 4565543 2 2346799999999964
No 166
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.59 E-value=6.3e-06 Score=78.56 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecc
Q 011202 231 VINTLAK-GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 231 l~~~l~~-gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p 277 (491)
+.+.|.+ |++|+++++|.+|+.+++. ..|.+++|+++.+|+||+|..
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 4444443 8999999999999998886 467888999999999999986
No 167
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.58 E-value=2.6e-06 Score=88.19 Aligned_cols=43 Identities=44% Similarity=0.548 Sum_probs=39.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||+|.+|++||+.++++|.+|+|+||++.+||.+.
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 3478999999999999999999999999999999999998665
No 168
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.57 E-value=1.6e-06 Score=90.09 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=37.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.++||+|||||.+||+||+.+++.|.+|+|+||....||.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999988766643
No 169
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.55 E-value=6.8e-08 Score=91.79 Aligned_cols=57 Identities=39% Similarity=0.515 Sum_probs=45.9
Q ss_pred hhhhhccccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 13 RALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 13 ~~~~~~~~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+++.++.-.........+++|||||++|++||..|++.|++|.++||++.+||+...
T Consensus 109 kar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 109 KARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred HHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 344443333333345678999999999999999999999999999999999999754
No 170
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.55 E-value=8e-07 Score=91.05 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=36.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
...+||+|||+|++||+||+.++ .|.+|+|+||.+..||.+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 35789999999999999999996 499999999998877743
No 171
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=1.1e-06 Score=90.77 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
..+||+|||||.+||+||..+++.|.+|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3679999999999999999999999999999998777664
No 172
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.54 E-value=1.9e-06 Score=89.53 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.++||+|||||++||+||+.++++|.+|+|+||....||.+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 35799999999999999999999999999999988767643
No 173
>PRK08275 putative oxidoreductase; Provisional
Probab=98.54 E-value=9.8e-07 Score=90.93 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (491)
..+||+|||||.+||+||+.+++. |.+|+|+||.+..+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 458999999999999999999987 689999999876433
No 174
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.53 E-value=2.4e-06 Score=88.68 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (491)
..+||+|||||.+||+||+.+++. |.+|+|+||....+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 357999999999999999999998 99999999987644
No 175
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.53 E-value=9.3e-07 Score=90.06 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++||+|||+|++||+||..++ |.+|+|+||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 35789999999999999999996 569999999876
No 176
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.52 E-value=1.4e-06 Score=90.05 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (491)
..+||+|||||++||+||+.+++. |.+|+|+||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 467999999999999999999987 47999999988777633
No 177
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.52 E-value=1.2e-06 Score=87.75 Aligned_cols=34 Identities=47% Similarity=0.687 Sum_probs=30.6
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEeeCCC--Ccce
Q 011202 33 VIGAGMAGVAAARALHDASFKVVLLESRDR--VGGR 66 (491)
Q Consensus 33 IIGaGisGL~aA~~L~~~G~~V~vlE~~~~--~GG~ 66 (491)
|||+|++||+||+.+++.|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999874 4553
No 178
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.49 E-value=1.1e-06 Score=86.85 Aligned_cols=63 Identities=21% Similarity=0.089 Sum_probs=47.3
Q ss_pred ccCCccccccch---HHHHHHHh----c-cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhh
Q 011202 217 LPGGHGLMVRGY---LPVINTLA----K-GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 217 ~~~~~~~~~~G~---~~l~~~l~----~-gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
+.++.+.|.+|. ..+..+|+ + |+.|+.+|+|++|....++ +.|.|..| .+++.+||.|+..+.
T Consensus 172 v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred heeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 345556666663 23444443 2 8899999999999987665 58999999 799999999998765
No 179
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.49 E-value=1.5e-07 Score=101.54 Aligned_cols=42 Identities=29% Similarity=0.524 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++|+|||||++||+||++|+++|++|+|||+.+.+||.++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 468999999999999999999999999999999999999876
No 180
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.49 E-value=2e-06 Score=95.76 Aligned_cols=42 Identities=36% Similarity=0.605 Sum_probs=39.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+.++||+|||+|.+||+||+.+++.|.+|+|+||.+..||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 457999999999999999999999999999999999999864
No 181
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.49 E-value=2.3e-06 Score=88.28 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (491)
++||+|||||++||+||+.++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57999999999999999999987 57999999998877744
No 182
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=3e-06 Score=87.94 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
..+||+|||||++||+||+.+++.|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999997766653
No 183
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.47 E-value=2.8e-06 Score=88.84 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
..+||+|||||++||+||..+++.|.+|+|+||.+..+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 468999999999999999999999999999999877665
No 184
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.47 E-value=2.1e-06 Score=89.00 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=32.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 31 v~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
|+|||||++||+||..+++.|.+|+|+||.+.+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 68999999999999999999999999999885653
No 185
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.47 E-value=2.4e-07 Score=92.36 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=40.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeeCCCCcceeee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~s 69 (491)
....++|+|||||++||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456789999999999999999987 69999999999999998874
No 186
>PLN02815 L-aspartate oxidase
Probab=98.47 E-value=2e-06 Score=88.64 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
..++||+|||+|++||+||+.+++.| +|+|+||....||.+
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 34689999999999999999999999 999999988877743
No 187
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.46 E-value=1.8e-07 Score=94.67 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
.++||+|||||++|++||+.|++.|++|+|+|+++.+||.|..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 4689999999999999999999999999999998899998753
No 188
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.45 E-value=2.2e-07 Score=99.44 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=40.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..+||+|||||++||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999999864
No 189
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.43 E-value=6.2e-05 Score=72.87 Aligned_cols=32 Identities=38% Similarity=0.673 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
||+|||+|++||++|+.|.+. ++|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999998 99999999654
No 190
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=7.7e-06 Score=84.79 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.++||+|||||++||+||+.+++. .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 568999999999999999999987 89999999776554
No 191
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=2.5e-07 Score=93.33 Aligned_cols=41 Identities=34% Similarity=0.492 Sum_probs=38.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++|++||..+++.|++|+|+|+++.+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 58999999999999999999999999999998889999884
No 192
>PRK06116 glutathione reductase; Validated
Probab=98.41 E-value=2.5e-07 Score=93.17 Aligned_cols=42 Identities=36% Similarity=0.553 Sum_probs=38.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
...+||+|||||++|++||..|+++|++|+|+|+ ..+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~-~~~GG~c~ 43 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEA-KRLGGTCV 43 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec-cchhhhhh
Confidence 3478999999999999999999999999999999 58999774
No 193
>PRK12831 putative oxidoreductase; Provisional
Probab=98.40 E-value=3.5e-07 Score=91.87 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=40.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.+.+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 4678999999999999999999999999999999999999875
No 194
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=3.3e-07 Score=92.53 Aligned_cols=43 Identities=33% Similarity=0.433 Sum_probs=39.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||++|++||..|++.|++|+|+|+.+.+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 4579999999999999999999999999999999888999774
No 195
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.40 E-value=1.5e-05 Score=76.80 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (491)
.++||++|||||.|.+.++.|++. ..+|+|+||.+.++...+.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~ 46 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSN 46 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCC
Confidence 578999999999999999999997 5789999999988866654
No 196
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.39 E-value=3.2e-07 Score=92.14 Aligned_cols=41 Identities=41% Similarity=0.553 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999999 689998863
No 197
>PLN02985 squalene monooxygenase
Probab=98.37 E-value=8.2e-07 Score=90.14 Aligned_cols=43 Identities=33% Similarity=0.433 Sum_probs=37.0
Q ss_pred ccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 20 ~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
........++||+|||||++|+++|+.|+++|++|+|+||...
T Consensus 35 ~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 35 VAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred hcccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3333356789999999999999999999999999999999653
No 198
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=4.1e-07 Score=92.13 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
|...|||+|||||++|++||..|++.|++|+|+|+ +.+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc-cCCCcceEc
Confidence 34679999999999999999999999999999999 489998854
No 199
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.37 E-value=3.7e-07 Score=91.63 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+++||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 368999999999999999999999999999999 57999875
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.37 E-value=5e-07 Score=92.99 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=39.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
...+||+|||||++||+||.+|++.|++|+|+|+ ..+||.+..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~ 44 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITI 44 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEe
Confidence 4569999999999999999999999999999999 578998764
No 201
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=4.2e-07 Score=91.17 Aligned_cols=41 Identities=39% Similarity=0.477 Sum_probs=37.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC-Ccceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~-~GG~~~ 68 (491)
.+||+|||||++|++||..|++.|++|+|+||.+. +||.|.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 68999999999999999999999999999999864 699874
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.37 E-value=4e-07 Score=92.14 Aligned_cols=41 Identities=34% Similarity=0.506 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
.+||+|||||++|++||+.|++.|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 37999999999999999999999999999999 899998764
No 203
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.35 E-value=1e-05 Score=73.26 Aligned_cols=39 Identities=36% Similarity=0.621 Sum_probs=36.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
-|+|||+|++||+|+..+..+|-.|+++|++..+||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999999888999999999999764
No 204
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.35 E-value=5e-07 Score=96.35 Aligned_cols=43 Identities=42% Similarity=0.551 Sum_probs=40.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..++|+|||||++||+||++|+++|++|+|+|+.+.+||.++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 5679999999999999999999999999999999999998864
No 205
>PRK06370 mercuric reductase; Validated
Probab=98.34 E-value=5.3e-07 Score=91.11 Aligned_cols=44 Identities=36% Similarity=0.459 Sum_probs=38.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
|..++||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 345799999999999999999999999999999994 67887753
No 206
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.34 E-value=5.4e-07 Score=90.51 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC-CCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~-~~GG~~~s 69 (491)
+.+||+|||||++|++||++|++.|++|+|+|+.+ .+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 36899999999999999999999999999999976 58998864
No 207
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.33 E-value=5.2e-06 Score=83.08 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=31.2
Q ss_pred ccCCeecCceeEEEEecCCc-E-EEEEcCCcEEEcCEEEEecchhh
Q 011202 237 KGLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~-v-~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.|++++.++ |.++..++++ + .|.+.+|++++||.||-|+....
T Consensus 167 ~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 167 RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 499988774 8888776554 3 78888999999999999998654
No 208
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.33 E-value=1.8e-05 Score=71.51 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=39.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeeecC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDY 71 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~ 71 (491)
....+|++|||||+.||+.|+.|.-. +.+|.|+||...++=..++.+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghN 93 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHN 93 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccc
Confidence 45789999999999999999999866 889999999988875554433
No 209
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=6.1e-07 Score=90.73 Aligned_cols=42 Identities=36% Similarity=0.475 Sum_probs=38.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..+||+|||||++|++||..|++.|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46899999999999999999999999999999966 9998754
No 210
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.30 E-value=7e-07 Score=83.39 Aligned_cols=44 Identities=32% Similarity=0.580 Sum_probs=39.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s 69 (491)
...+||+|||||++||+||..|.+. ..+|.|+||...+||.+-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 4689999999999999999999763 4689999999999998876
No 211
>PRK10262 thioredoxin reductase; Provisional
Probab=98.29 E-value=9.1e-07 Score=84.93 Aligned_cols=44 Identities=27% Similarity=0.507 Sum_probs=39.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 24 GQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 24 ~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+.+..+||+|||||++||+||..|++.|++|+|+|+ ...||.+.
T Consensus 2 ~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 2 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 456789999999999999999999999999999996 56788664
No 212
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.28 E-value=1.2e-06 Score=86.03 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~s 69 (491)
..++|+|||||++||+||.+|. +.|++|+|||+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4568999999999999999765 679999999999999999985
No 213
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.27 E-value=9.8e-07 Score=92.80 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 4679999999999999999999999999999999999998753
No 214
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.27 E-value=9.2e-05 Score=67.81 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~----G~~V~vlE~~~~ 62 (491)
.++||+|||||.+|++.|++|.++ |.+|.|+|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 489999999999999999999864 799999999774
No 215
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=8.8e-07 Score=89.58 Aligned_cols=41 Identities=44% Similarity=0.541 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+++||+|||||++|++||..|++.|.+|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 468999999999999999999999999999999 78999775
No 216
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.27 E-value=9.7e-07 Score=96.28 Aligned_cols=43 Identities=33% Similarity=0.434 Sum_probs=39.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..+||+|||||++||+||++|+++|++|+|||+.+.+||.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 4679999999999999999999999999999999999998753
No 217
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.26 E-value=1.1e-06 Score=90.43 Aligned_cols=43 Identities=44% Similarity=0.736 Sum_probs=39.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--CCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~--~~GG~~~ 68 (491)
..++||+|||+|.+||+||..++++|.+|+|+||.+ ..||.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 467899999999999999999999999999999999 7888654
No 218
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.25 E-value=1.3e-06 Score=87.54 Aligned_cols=42 Identities=40% Similarity=0.556 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 468999999999999999999999999999999999999764
No 219
>PRK14694 putative mercuric reductase; Provisional
Probab=98.24 E-value=1.2e-06 Score=88.56 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..++||+|||||++|++||..|++.|.+|+|+|+. .+||.|..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 46899999999999999999999999999999994 79998753
No 220
>PRK14727 putative mercuric reductase; Provisional
Probab=98.24 E-value=1.3e-06 Score=88.56 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=40.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..++|++|||||++|+++|..|++.|.+|+|+|+.+.+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 45799999999999999999999999999999998899999864
No 221
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.24 E-value=1.3e-06 Score=88.84 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=38.9
Q ss_pred HHHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 230 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 230 ~l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.+.+.|. .|+++++++.|.+|+..++.+.+.+.+|+++.+|.||+++..
T Consensus 227 ~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 227 KVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 3444554 389999999999998766666777778888999999999864
No 222
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.24 E-value=3.9e-05 Score=74.02 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~ 62 (491)
++++|+|||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4568999999999999999999974 89999999773
No 223
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=1.3e-06 Score=88.46 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=38.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEee------CCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES------RDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~------~~~~GG~~~s 69 (491)
...+|++|||||++|++||.+|++.|.+|+|+|+ ...+||.|..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 3578999999999999999999999999999998 3678887753
No 224
>PLN02507 glutathione reductase
Probab=98.22 E-value=1.7e-06 Score=87.88 Aligned_cols=44 Identities=36% Similarity=0.363 Sum_probs=39.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEee---------CCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~~s 69 (491)
..+|||+|||||++|++||..+++.|.+|+|+|+ .+.+||.|..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 3478999999999999999999999999999996 3678998854
No 225
>PTZ00058 glutathione reductase; Provisional
Probab=98.22 E-value=1.4e-06 Score=88.92 Aligned_cols=43 Identities=37% Similarity=0.483 Sum_probs=39.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
.+++||+|||||++|++||..+++.|.+|+|+|+. .+||.|-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 35789999999999999999999999999999994 79998754
No 226
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.22 E-value=1.3e-06 Score=88.23 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=36.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999955 888864
No 227
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.20 E-value=3.1e-05 Score=78.47 Aligned_cols=39 Identities=38% Similarity=0.382 Sum_probs=34.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975544444
No 228
>PRK13748 putative mercuric reductase; Provisional
Probab=98.20 E-value=1.6e-06 Score=90.10 Aligned_cols=42 Identities=36% Similarity=0.474 Sum_probs=38.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..+||+|||||++|++||..|++.|.+|+|+|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 4699999999999999999999999999999996 89998753
No 229
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=1.9e-06 Score=92.24 Aligned_cols=42 Identities=31% Similarity=0.549 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||++|+++|++|+|||+.+.+||.++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 567999999999999999999999999999999999999865
No 230
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.19 E-value=2.1e-06 Score=83.14 Aligned_cols=37 Identities=41% Similarity=0.413 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
+.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 5699999999999999999999999999999877544
No 231
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.18 E-value=2.4e-06 Score=86.38 Aligned_cols=42 Identities=43% Similarity=0.658 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999998765
No 232
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.17 E-value=5.9e-07 Score=76.10 Aligned_cols=67 Identities=28% Similarity=0.556 Sum_probs=53.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
..||+|||||-+||+|||+.+++ ..+|.|+|.+-.+||-++ +|++.|......++..-+++++|++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVPY 144 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCCc
Confidence 56999999999999999999976 579999999999998665 45555544444566677788998873
No 233
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.16 E-value=2.7e-06 Score=83.98 Aligned_cols=44 Identities=39% Similarity=0.551 Sum_probs=40.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
.++||++|||||++|.+||..+++.|.+|+++|+...+||.|-.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 46899999999999999999999999999999997789998863
No 234
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.16 E-value=2.1e-06 Score=89.23 Aligned_cols=43 Identities=42% Similarity=0.604 Sum_probs=40.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..++|+|||+|++||+||-.|.|.|+.|+|+||++++||.+..
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 5678999999999999999999999999999999999998863
No 235
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.15 E-value=2.5e-06 Score=84.34 Aligned_cols=43 Identities=40% Similarity=0.460 Sum_probs=40.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
...+|+|||||++||+||+.|++.|+.|+|+|+.+.+||++..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3478999999999999999999999999999999999999875
No 236
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.15 E-value=2.8e-06 Score=89.01 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999875
No 237
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.14 E-value=3e-06 Score=88.82 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..++|+|||||++||++|+.|++.|++|+|+|+.+.+||.++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 4688999999999999999999999999999999999998753
No 238
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.13 E-value=3.2e-06 Score=85.14 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
+.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 5679999999999999999999999999999999999998763
No 239
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.13 E-value=3.1e-06 Score=85.33 Aligned_cols=43 Identities=40% Similarity=0.665 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
...++|+|||||++||++|+.|++.|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3567999999999999999999999999999999999998764
No 240
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.12 E-value=2.7e-06 Score=89.76 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
..++|+|||||++||+||++|++.|++|+|+|+.+..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 567899999999999999999999999999999776554
No 241
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.12 E-value=6.4e-05 Score=74.08 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 229 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 229 ~~l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
..+.+.+.+|++++++++|.+|+.+++++.|++.+|+.+.||+||+|+.++.
T Consensus 139 ~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 139 RALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 4444444458899999999999988888889888887799999999998765
No 242
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.11 E-value=5.4e-05 Score=82.52 Aligned_cols=36 Identities=36% Similarity=0.440 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+||+|||||.+||+||+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 568999999999999999999999999999999764
No 243
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.2e-05 Score=70.15 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=41.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY 71 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~ 71 (491)
+.+||+|+|.|+.=...+..|+..|.+|+.+|+|+..||-..|..
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 459999999999999999999999999999999999999988753
No 244
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.09 E-value=3.6e-06 Score=86.99 Aligned_cols=42 Identities=26% Similarity=0.490 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
..++||+|||+|++||+||+.++++|.+|+|+||....||.+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 457899999999999999999999999999999999888843
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.09 E-value=3.5e-05 Score=77.65 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCc
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVG 64 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~G 64 (491)
++|+|||||++||+||..|++.| .+|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 37999999999999999999875 5899999987543
No 246
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.09 E-value=3.8e-06 Score=84.77 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeC--------CCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESR--------DRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~--------~~~GG~~~s 69 (491)
..+||+|||||++|..||..+++. |.+|+|+|+. +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 579999999999999999999997 9999999984 579998854
No 247
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.06 E-value=4.4e-06 Score=91.67 Aligned_cols=43 Identities=37% Similarity=0.563 Sum_probs=40.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998864
No 248
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=4.6e-06 Score=86.35 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
++||+|||+|++||+||..++++|.+|+|+||....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 569999999999999999999999999999998876653
No 249
>PLN02546 glutathione reductase
Probab=98.03 E-value=5.6e-06 Score=84.70 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=37.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEee---------CCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~~s 69 (491)
+|||+|||||++|+.||..+++.|.+|+|+|+ ...+||.|-.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 58999999999999999999999999999996 2567887754
No 250
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.02 E-value=0.00067 Score=65.58 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=40.3
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecchhh
Q 011202 229 LPVINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 229 ~~l~~~l~-~gv~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
..+.+.+. .|++++.+++|+.|+.+++++ .|.+.+| ++.||.||+|+.++.
T Consensus 141 ~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 141 KALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 34444443 388999999999999888775 5677677 899999999998765
No 251
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.02 E-value=7.2e-06 Score=82.99 Aligned_cols=42 Identities=40% Similarity=0.618 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++|+|||||++||+||..|++.|++|+|+|+.+++||.++
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347999999999999999999999999999999999998775
No 252
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=6.9e-06 Score=85.12 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
..+||+|||||.+||+||..+++.|.+|+|+||....||.+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999987766643
No 253
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.99 E-value=7.4e-06 Score=79.90 Aligned_cols=37 Identities=41% Similarity=0.478 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.||+|||||++|+.||+.|++.|++|+|+|+.+..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999887653
No 254
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.99 E-value=9.4e-06 Score=84.02 Aligned_cols=43 Identities=33% Similarity=0.523 Sum_probs=39.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
....+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567899999999999999999999999999999999999765
No 255
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.96 E-value=1.3e-05 Score=81.00 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=35.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
+||+|||+|++|+++|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999998885
No 256
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.95 E-value=1.1e-05 Score=83.69 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=38.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~-~~~GG~~~s 69 (491)
+|||+|||||++|..||..+++.|.+|+|+|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999974 479998754
No 257
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.93 E-value=1.9e-05 Score=58.39 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
+|+|||||+.|+-+|..|++.|.+|+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999988644
No 258
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=1.2e-05 Score=81.11 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=35.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+|+|||||++|++||..|++.|.+|+|+|+. ..||.|-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 8999999999999999999999999999995 6888775
No 259
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.91 E-value=2e-05 Score=76.67 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=39.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
...++|+|||||++||++|..|++.|++|+|+|+.+.+||....
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 34579999999999999999999999999999999999987653
No 260
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.90 E-value=1.3e-05 Score=71.29 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
||+|||||++||+||..|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988553
No 261
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.90 E-value=1.4e-05 Score=78.62 Aligned_cols=35 Identities=37% Similarity=0.513 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++||+|||||++|++||+.|+++|.+|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46899999999999999999999999999999863
No 262
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.0002 Score=69.40 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--C-CcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--S-FKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G-~~V~vlE~~~~~GG~~ 67 (491)
+++|+|||+|.+|++.|.+|.+. . ..|+|+|+....|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 47899999999999999999986 2 2399999999888544
No 263
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.89 E-value=1.2e-05 Score=74.63 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
.....||+|||||++|-+.|+.|+|.|.+|.|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345789999999999999999999999999999994
No 264
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.88 E-value=0.00014 Score=71.91 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=35.0
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.|++++++++|++|+. ++.+.+.+.+|+++.+|.||+++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 3899999999999976 5556778888989999999999864
No 265
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.87 E-value=1.5e-05 Score=80.70 Aligned_cols=41 Identities=39% Similarity=0.554 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--------CCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--------RVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~--------~~GG~~~ 68 (491)
.+|++|||||++|+.||+.+++.|.+|+|+|+.. .+||.|-
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 5899999999999999999999999999999732 5788764
No 266
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.87 E-value=1.2e-05 Score=76.39 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCc
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVG 64 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~~G 64 (491)
||+||||||.+|..+|.+|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999976543
No 267
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.86 E-value=1.6e-05 Score=72.35 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
|++||+|||||++||+||..|+++|.++.|+-.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 578999999999999999999999999999876
No 268
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.85 E-value=0.00017 Score=70.94 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=36.4
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++.+.+.+.+|+++.+|.||+|+..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 88999999999999877777788889989999999999864
No 269
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.85 E-value=1.9e-05 Score=79.84 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
++||+|||||.+|+.||..|++.|.+|+|+|+. .+||.|..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 458999999999999999999999999999995 58998853
No 270
>PRK07846 mycothione reductase; Reviewed
Probab=97.84 E-value=0.00019 Score=72.19 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=36.0
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.+++++++++|++|+.+++++.+.+.+|+++.+|.||+|+..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 478999999999998776677777778889999999999864
No 271
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.82 E-value=2.7e-05 Score=72.36 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (491)
..+.|+|||+|++|+++|+.|.++ +.+|+|+|+.+.++|..+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 455899999999999999999985 6899999999999998875
No 272
>PRK13984 putative oxidoreductase; Provisional
Probab=97.82 E-value=2.6e-05 Score=81.58 Aligned_cols=43 Identities=30% Similarity=0.534 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.+.++|+|||||++||++|..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3567899999999999999999999999999999999998765
No 273
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.82 E-value=0.0002 Score=72.56 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=35.1
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCC--cEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g--~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++++.+.+.+| +++.+|.||+|+..
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 889999999999998777777776667 47999999999864
No 274
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.82 E-value=0.00021 Score=70.80 Aligned_cols=40 Identities=45% Similarity=0.612 Sum_probs=35.5
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCc--EEEcCEEEEecc
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVP 277 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~--~~~ad~VI~a~p 277 (491)
|++++++++|+.++..++++.+.+++|+ ++++|.|++|+.
T Consensus 228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 6899999999999998777888888876 689999999986
No 275
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.81 E-value=0.00022 Score=72.16 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=35.9
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|++|+.+++++.+++.+|+++.+|.||+|+..
T Consensus 230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 88999999999998877777777778888999999999864
No 276
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.79 E-value=2.3e-05 Score=83.90 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~ 62 (491)
++|+|||||++||++|+.|+++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999875
No 277
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=0.00025 Score=71.82 Aligned_cols=41 Identities=41% Similarity=0.588 Sum_probs=34.9
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCC---cEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~ 278 (491)
|++++++++|++|+.+++++.+.+.+| +++.+|.||+|+..
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 899999999999998777777776665 67999999999864
No 278
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.76 E-value=2.9e-05 Score=79.76 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
..+||+|||+|++||+||+.+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 468999999999999999999987 899999998877774
No 279
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.76 E-value=3.1e-05 Score=78.84 Aligned_cols=43 Identities=35% Similarity=0.421 Sum_probs=38.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||.+||.||..++++|.+|+|+||.+..+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 4578999999999999999999999999999999988886543
No 280
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.75 E-value=0.00034 Score=70.36 Aligned_cols=42 Identities=40% Similarity=0.556 Sum_probs=36.0
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.+++++++++|.+|+.+++++.+.+.+|+++.+|.||++++.
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 478999999999999877777777778888999999999863
No 281
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.72 E-value=4.4e-05 Score=69.68 Aligned_cols=40 Identities=43% Similarity=0.748 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--CCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~--~~GG~ 66 (491)
...||+|||||++||.||.+|+.+|.+|+|+|+.. .+||-
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 46899999999999999999999999999999865 34543
No 282
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.71 E-value=0.00043 Score=69.60 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35899999999999999999999999999998654
No 283
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.71 E-value=0.00015 Score=67.40 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s 69 (491)
.++.+-|||+|++||++|.+|.|. |.++.|+|.-+..||..-.
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 467799999999999999999986 5689999999999997743
No 284
>PRK02106 choline dehydrogenase; Validated
Probab=97.69 E-value=4.1e-05 Score=79.28 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=34.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE~~~ 61 (491)
++..+|+||||||.+|+.+|..|++ .|++|+|||+.+
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 3567899999999999999999999 799999999975
No 285
>PLN02507 glutathione reductase
Probab=97.69 E-value=0.00049 Score=70.03 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=35.9
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|+++++++.|.+|+.+++++.+.+.+|+++.+|.||++++.
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 88999999999998777777777878888999999999863
No 286
>PRK06116 glutathione reductase; Validated
Probab=97.67 E-value=0.00053 Score=69.17 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=35.3
Q ss_pred cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.++++ +.+.+.+|+++.+|.||+|+..
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 8899999999999876555 7778888888999999999853
No 287
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.66 E-value=4.8e-05 Score=78.63 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCcEEEEeeCCC
Q 011202 30 SVIVIGAGMAGVAAARALH----DASFKVVLLESRDR 62 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~----~~G~~V~vlE~~~~ 62 (491)
||+|||||++||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999765
No 288
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.64 E-value=2.3e-05 Score=69.99 Aligned_cols=43 Identities=26% Similarity=0.608 Sum_probs=37.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEeeCCCCccee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRV 67 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G------~~V~vlE~~~~~GG~~ 67 (491)
+...++|+|||||+.|.++||+|++.+ ..|+|||.....||..
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS 55 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS 55 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence 556689999999999999999999987 7899999987777654
No 289
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.64 E-value=0.00064 Score=68.39 Aligned_cols=41 Identities=37% Similarity=0.472 Sum_probs=35.6
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|+++++++.|.+|+.+++++.+.+.+|+++.+|.||+|++.
T Consensus 221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 88999999999998776667777778888999999999864
No 290
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.63 E-value=0.00062 Score=68.86 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=35.8
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++++.+.+.+|+++.+|.||+++..
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence 88999999999998777777777788889999999999763
No 291
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.63 E-value=8.8e-05 Score=69.07 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=40.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
..+|++|||+|+.|-.||...++.|.+.+++|++..+||.|--
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5799999999999999999999999999999999999998864
No 292
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0011 Score=61.83 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=41.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeec
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (491)
..+||+|+|.|+.=...+..|+.+|.+|+.+|+++..|+-.+|.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asl 48 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASL 48 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccce
Confidence 36999999999999999999999999999999999999988775
No 293
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.60 E-value=0.0001 Score=70.72 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~ 62 (491)
.+|+++||.|+++|+.|..|.+.+ .++..||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 479999999999999999999886 89999999774
No 294
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.59 E-value=0.00077 Score=67.72 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 35799999999999999999999999999999664
No 295
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.58 E-value=0.00044 Score=74.34 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=33.9
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
|++++++++|+.|+.+.. .|++.+|+++.+|++|+|+...
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 889999999999987654 4667788889999999999754
No 296
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.55 E-value=0.00087 Score=67.88 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 36899999999999999999999999999998654
No 297
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.54 E-value=0.00064 Score=73.07 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=35.0
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|+++++++.|.+|..++....|++++|+++.+|.||++++.
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 88999999999997655445778889999999999999863
No 298
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.54 E-value=0.00054 Score=73.76 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=33.3
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
|++++.+++|.+|..+.. .|.+.+|+++.||++|+|+...
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 889999999999977543 4567788889999999999753
No 299
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.54 E-value=9.3e-05 Score=74.46 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+||++|||||++|..||.. +.|.+|+|+|+ +.+||.|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence 5899999999999998754 46999999998 67898885
No 300
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.53 E-value=0.001 Score=67.47 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3589999999999999999999999999999755
No 301
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.52 E-value=0.00091 Score=67.87 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 35899999999999999999999999999998653
No 302
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=9.1e-05 Score=74.44 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+||++|||||++|..||.. ..|.+|+|+|+ +.+||.|-
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCccc
Confidence 4899999999999999866 46999999998 67888774
No 303
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.51 E-value=0.0011 Score=67.24 Aligned_cols=35 Identities=31% Similarity=0.588 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 35899999999999999999999999999999664
No 304
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.00099 Score=65.46 Aligned_cols=35 Identities=43% Similarity=0.450 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+||+|||||.+|+-||+..+|.|.+++++=-+-
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 46999999999999999999999999999987653
No 305
>PRK06370 mercuric reductase; Validated
Probab=97.50 E-value=0.0011 Score=67.11 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 468999999999999999999999999999996643
No 306
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.49 E-value=0.0012 Score=66.87 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 46799999999999999999999999999998654
No 307
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.47 E-value=0.00014 Score=70.86 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHhc-cCCeecCceeEEEEecCCcEE-EEEcCC--cEEEcCEEEEecchh
Q 011202 229 LPVINTLAK-GLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLG 279 (491)
Q Consensus 229 ~~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~-v~~~~g--~~~~ad~VI~a~p~~ 279 (491)
+.+.+.+.+ |++++.+++|.++..+++++. |.+.++ ..+.||+||+|+..+
T Consensus 267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 345555543 889999999999999888764 555665 379999999998876
No 308
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.46 E-value=0.0015 Score=66.00 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-+|..|.+.|.+|+|+|+.++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 35799999999999999999999999999998654
No 309
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.46 E-value=0.0014 Score=66.70 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
.+++|||||..|+-.|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 4799999999999999999999999999986
No 310
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.43 E-value=0.0014 Score=65.70 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 35899999999999999999999999999998553
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.42 E-value=0.0013 Score=70.88 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=34.0
Q ss_pred cCCeecCceeEEEEecCC--cEEEEEcCCcEEEcCEEEEecc
Q 011202 238 GLDIRLGHRVTKITRHYI--GVKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~--~v~v~~~~g~~~~ad~VI~a~p 277 (491)
|+++++++.|++|..+++ ...|.+.+|+++.+|.||+|++
T Consensus 201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTG 242 (847)
T ss_pred CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCC
Confidence 899999999999986532 3467788999999999999996
No 312
>PRK14727 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.0018 Score=65.71 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=34.4
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 889999999999988777777766666 68999999998753
No 313
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.40 E-value=0.002 Score=65.26 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=34.2
Q ss_pred ccCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecc
Q 011202 237 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p 277 (491)
.|+++++++.|++|+.++++ ..+.+.+|+++.+|.||+++.
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G 285 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIG 285 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeC
Confidence 38899999999999876444 567777788899999999986
No 314
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.38 E-value=0.0019 Score=65.50 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999999664
No 315
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.37 E-value=0.002 Score=64.81 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=33.6
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++++.+.++++ ++.+|.||+|+..
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 899999999999998776677766666 6899999999853
No 316
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.36 E-value=0.0021 Score=65.19 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
.+++|||||..|+-+|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 4699999999999999999999999999986
No 317
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00018 Score=73.73 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.+++|++|||+|.+|.+.|..|++.|.+|+|||+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4578999999999999999999999999999999953
No 318
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.35 E-value=0.00023 Score=71.40 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (491)
+++|+|||||++|++||..|++. +++|+|+|+++..+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 35899999999999999999886 57899999987655
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.34 E-value=0.0022 Score=64.60 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||.+|+-+|..|.+.|.+|+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 3579999999999999999999999999998754
No 320
>PRK14694 putative mercuric reductase; Provisional
Probab=97.32 E-value=0.0026 Score=64.51 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.0
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|+++++++.|.+|+.+++.+.+.++++ ++.+|.||+|+..
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC
Confidence 889999999999987766666666555 7999999999864
No 321
>PRK13748 putative mercuric reductase; Provisional
Probab=97.31 E-value=0.0024 Score=66.41 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=33.6
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|+++++++.|.+|+.+++.+.+.++++ ++.+|.||+|+..
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence 889999999999987776666666666 7999999999864
No 322
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.28 E-value=0.0022 Score=64.32 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 5799999999999999999999999999998654
No 323
>PTZ00058 glutathione reductase; Provisional
Probab=97.24 E-value=0.0037 Score=64.28 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 45799999999999999999999999999998653
No 324
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.21 E-value=0.00028 Score=72.72 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
|+||||||.+|+.+|..|++.| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 7999999975
No 325
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.20 E-value=0.00043 Score=68.54 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=33.5
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
.+++++.++.|..|..++. .|.+.+|+++.||++|+|+...
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCC
Confidence 3789999999999987654 4556788889999999999754
No 326
>PLN02785 Protein HOTHEAD
Probab=97.14 E-value=0.00055 Score=70.69 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+||||||.+|+.+|..|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 457999999999999999999999 58999999965
No 327
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.08 E-value=0.00059 Score=68.15 Aligned_cols=37 Identities=27% Similarity=0.629 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.++++|+|||||.+|+.+|..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 3567899999999999999999877899999998763
No 328
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.05 E-value=0.025 Score=58.16 Aligned_cols=44 Identities=30% Similarity=0.245 Sum_probs=34.8
Q ss_pred ccCCeecCceeEEEEecCCcE-EEEEc---CCc--EEEcCEEEEecchhh
Q 011202 237 KGLDIRLGHRVTKITRHYIGV-KVTVE---GGK--TFVADAVVVAVPLGV 280 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v-~v~~~---~g~--~~~ad~VI~a~p~~~ 280 (491)
.|++++++++|++|+.+++++ .|++. +|+ ++.|+.||+|+.++.
T Consensus 141 ~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 141 HGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred cCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 499999999999999887764 45442 342 689999999998764
No 329
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0015 Score=60.09 Aligned_cols=69 Identities=28% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL 102 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (491)
+-.||.+|||||-+||+||-+.+..|.+|.++|-=.. ...|.+|..|+...+-.+-+..++.-..-||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P--------tP~GtsWGlGGTCvNVGCIPKKLMHQAallG~ 85 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP--------TPQGTSWGLGGTCVNVGCIPKKLMHQAALLGE 85 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc--------CCCCCccccCceeeecccccHHHHHHHHHHHH
Confidence 4689999999999999999999999999999996321 11345566666655433333334333333443
No 330
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.01 E-value=0.00077 Score=67.18 Aligned_cols=40 Identities=43% Similarity=0.683 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
..+++|||+|..||.+|..|++.|++|+++|+.+++||..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 5689999999999999999999999999999999988643
No 331
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.00093 Score=61.64 Aligned_cols=44 Identities=34% Similarity=0.420 Sum_probs=40.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
...+|..|||||-.|+.+|++.++.|.+|.|+|..-.+||.|--
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 45899999999999999999999999999999997799999864
No 332
>PLN02546 glutathione reductase
Probab=96.99 E-value=0.008 Score=61.83 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 45899999999999999999999999999998654
No 333
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.84 E-value=0.01 Score=59.27 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=31.1
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|..+ .|.+++|+++.+|.||++++.
T Consensus 242 gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 242 GVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCC
Confidence 8999999999999643 356788989999999999763
No 334
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.83 E-value=0.0016 Score=64.11 Aligned_cols=34 Identities=18% Similarity=0.477 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~ 61 (491)
+++|+|||||++|+++|..|.+.+ .+|+|+++.+
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 468999999999999999998864 5799999965
No 335
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0019 Score=59.25 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
...|.|||||++|--|||.+++.|.+|.++|=.+.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4569999999999999999999999999999866433
No 336
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0016 Score=58.88 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-------FKVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-------~~V~vlE~ 59 (491)
++++|+|||+|+.||++|+.+.+.+ .+|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 5679999999999999999998843 46888865
No 337
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.59 E-value=0.012 Score=55.38 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
..+.+|||||+.||-.+-.-.+.|.+||++|-.+.+||
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 45699999999999999999999999999999888773
No 338
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.59 E-value=0.069 Score=51.81 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.3
Q ss_pred Ccccc-ccchHHHHHHHh-----ccCCeecCceeEEEEecCCcEEEEEcCC-cEEEcCEEEEecc
Q 011202 220 GHGLM-VRGYLPVINTLA-----KGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVP 277 (491)
Q Consensus 220 ~~~~~-~~G~~~l~~~l~-----~gv~i~~~~~V~~I~~~~~~v~v~~~~g-~~~~ad~VI~a~p 277 (491)
|..+| .+-...++++|. .|++|+++++|++| +++++.+.+.++ +.+.||+||+|+.
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence 34454 334455666664 39999999999999 445677776543 4699999999995
No 339
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.50 E-value=0.0026 Score=55.27 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
|+|+|||.|..||..|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999855
No 340
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.49 E-value=0.0031 Score=53.35 Aligned_cols=32 Identities=38% Similarity=0.472 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998854
No 341
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.39 E-value=0.0046 Score=53.55 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|+|||||..|..-|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999844
No 342
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.36 E-value=0.004 Score=59.03 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~----G~~V~vlE~~~ 61 (491)
+..+||+|||||+.|++.|..|... ..+|.++|..+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 3589999999999999999999864 46899999973
No 343
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.32 E-value=0.0037 Score=61.15 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEeeCCC
Q 011202 30 SVIVIGAGMAGVAAARALHDA---SFKVVLLESRDR 62 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~---G~~V~vlE~~~~ 62 (491)
+|+|||||++|+.+|..|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999754 689999998765
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.0056 Score=62.32 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|+|||+|.+|+++|..|+++|++|+++|+.+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 355899999999999999999999999999998653
No 345
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.0048 Score=62.47 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
+|+|||.|.+|+++|..|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 346
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.12 E-value=0.0067 Score=57.70 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
++|+|||+|..|.+.|..|+++|++|+++|++..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999999753
No 347
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.02 Score=49.69 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=36.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC---C-CCcceeee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR---D-RVGGRVHT 69 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~---~-~~GG~~~s 69 (491)
+..+.+|+|||+|+++-+||.+++++-.+-++||-- + -+||-+.|
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 344558999999999999999999999999999952 2 34666554
No 348
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.93 E-value=0.012 Score=49.48 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 31 v~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
|+|||+|..|+..|+.|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998854
No 349
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.86 E-value=0.011 Score=55.46 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|..-|..|++.|++|+++|.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3479999999999999999999999999999865
No 350
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0053 Score=56.79 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=28.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLL 57 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vl 57 (491)
...|||+|||||++|-+||.|.+|+|.+.-|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 36899999999999999999999999875443
No 351
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.80 E-value=0.0044 Score=60.74 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
...+||+|||||.+|--||.-.+-.|.+|.++|+.|..-|..
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 356999999999999999999999999999999987655543
No 352
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.75 E-value=0.013 Score=56.67 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+++|+|||+|..|.+.|..|+++|++|++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 468999999999999999999999999999984
No 353
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.72 E-value=0.016 Score=54.71 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34679999999999999999999999999999854
No 354
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.68 E-value=0.028 Score=57.60 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=35.1
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecc
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 277 (491)
|+++++++.++.|..++....+.++||+.+.||-||+|+.
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G 240 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG 240 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence 8899999999999875555689999999999999999985
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.64 E-value=0.014 Score=55.48 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
|+|.|||+|..||+.|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999843
No 356
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.64 E-value=0.012 Score=59.45 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRV 63 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~ 63 (491)
...||.||||||-+|...|..|++. ..+|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4689999999999999999999997 5799999996654
No 357
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.60 E-value=0.017 Score=54.78 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999865
No 358
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.56 E-value=0.016 Score=52.99 Aligned_cols=45 Identities=36% Similarity=0.544 Sum_probs=37.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC--------CCCcceeeec
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--------DRVGGRVHTD 70 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~--------~~~GG~~~s~ 70 (491)
-..-+|+|||||+.|.-||....-.|.+|+|+|.+ +..|||..+.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence 35678999999999999999999999999999997 3556665553
No 359
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.56 E-value=0.02 Score=54.56 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.++|+|||+|..|.+.|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998853
No 360
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.55 E-value=0.33 Score=46.80 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=29.6
Q ss_pred cCCeecCceeEEEEecCC-cEEEEEcC---C--cEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYI-GVKVTVEG---G--KTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~-~v~v~~~~---g--~~~~ad~VI~a~p~ 278 (491)
.++|+.+++|+.++..++ ++.+.+.+ + .++.+|.||+||..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 468999999999999874 78777654 2 37899999999874
No 361
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.018 Score=55.67 Aligned_cols=40 Identities=35% Similarity=0.523 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCc
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVG 64 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~-~~~G 64 (491)
....+||+|||||.+|.-||...++.|.+.+++-.+ +.+|
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 367899999999999999999999999998888765 3444
No 362
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.48 E-value=0.022 Score=54.08 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
.++|+|||+|-.|...|.+|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 457999999999999999999999999999995
No 363
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.019 Score=54.09 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999854
No 364
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.02 Score=54.60 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
|++..+|+|||+|..|.+.|..|++.|++|+++|++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3455689999999999999999999999999999754
No 365
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.47 E-value=0.023 Score=48.63 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|+|+|.+|+.||..|...|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 46789999999999999999999999999999854
No 366
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.02 Score=51.54 Aligned_cols=65 Identities=26% Similarity=0.421 Sum_probs=44.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (491)
++++|||+|-.|.+.|..|.+.|++|+++|+.+. ++.... .-+.+.+.+. .+..-.+.++++|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~---~~~~~~----~~~~~~~~v~---gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE---RVEEFL----ADELDTHVVI---GDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH---HHHHHh----hhhcceEEEE---ecCCCHHHHHhcCCC
Confidence 4799999999999999999999999999999653 111100 0012333333 123346778888886
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.41 E-value=0.018 Score=54.21 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+|+|||+|..|...|..|+++|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999865
No 368
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.37 E-value=0.024 Score=57.46 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+++|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 468999999999999999999999999999997654
No 369
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.34 E-value=0.17 Score=48.52 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
|...+|++.||-|++-|+.|..|...+ .++..+||.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 456899999999999999999999875 7899999966
No 370
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.023 Score=57.39 Aligned_cols=34 Identities=35% Similarity=0.647 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|.+|+.+|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5689999999999999999999999999999964
No 371
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.30 E-value=0.16 Score=49.65 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.8
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+. + .|.+.+|+++.+|.||+|++.
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 889999999999853 2 466678889999999999874
No 372
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.25 E-value=0.025 Score=53.51 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34579999999999999999999999999999854
No 373
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.25 E-value=0.024 Score=50.21 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|+|||+|.|+.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 46889999999999999999999999999998764
No 374
>PRK04148 hypothetical protein; Provisional
Probab=95.13 E-value=0.024 Score=45.82 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+..++++||.| .|...|..|++.|++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 34689999999 999999999999999999998764
No 375
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.12 E-value=0.036 Score=47.15 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEeeC
Q 011202 26 ARSPSVIVIGAGM-AGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 26 ~~~~dv~IIGaGi-sGL~aA~~L~~~G~~V~vlE~~ 60 (491)
-..++|+|||+|- .|..+|.+|.+.|.+|+|+.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4678999999995 7999999999999999999975
No 376
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.07 E-value=0.027 Score=55.89 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||.|..|+..|..|+++|++|+++|.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 3679999999999999999999999999999865
No 377
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.07 E-value=0.029 Score=53.36 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
++|+|||+|-.|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999984
No 378
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.02 E-value=0.036 Score=53.30 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|..|...|..|+++|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4579999999999999999999999999999854
No 379
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.01 E-value=0.041 Score=55.41 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+..+|+|||+|..||.|+..+...|.+|+++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356789999999999999999999999999998854
No 380
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.99 E-value=0.032 Score=53.09 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
++|+|||+|..|.+.|..|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 381
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.92 E-value=0.033 Score=52.25 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999854
No 382
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.03 Score=52.76 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+|+|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999854
No 383
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.85 E-value=0.036 Score=56.37 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.++|+|||+|..|..-|..|+++|++|+|+|+++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44579999999999999999999999999999864
No 384
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.76 E-value=0.048 Score=48.21 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||-+|+..+..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999997653
No 385
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.75 E-value=0.043 Score=56.33 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 46899999999999999999999999999997553
No 386
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.66 E-value=0.037 Score=54.56 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
+++|+|+|-|.+|++||..|.+.|++|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 678999999999999999999999999999976655
No 387
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.66 E-value=0.072 Score=43.67 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~ 61 (491)
...+++|||||=+|-.+++.|.+.|.+ |+|+-|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 467899999999999999999999987 99998753
No 388
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.63 E-value=0.054 Score=51.52 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45679999999999999999999999999999854
No 389
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.61 E-value=0.047 Score=51.81 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~ 61 (491)
++|+|||+|..|.++|+.|+.+| .+|.++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37999999999999999999999 4799999864
No 390
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.57 E-value=0.049 Score=57.11 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 479999999999999999999999999999977543
No 391
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.54 E-value=0.038 Score=54.89 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 392
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.51 E-value=0.051 Score=52.17 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|..|...|..|++.|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 579999999999999999999999999999854
No 393
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.50 E-value=0.059 Score=50.99 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
++|+|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999886 899999844
No 394
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.46 E-value=0.041 Score=42.70 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+...|+|||||-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3568999999999999999999999999999885
No 395
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.42 E-value=0.073 Score=53.51 Aligned_cols=35 Identities=37% Similarity=0.502 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999998854
No 396
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.40 E-value=0.06 Score=45.83 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.|||-|..|...|..|.++|++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 4689999999999999999999999999999864
No 397
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.35 E-value=0.069 Score=52.03 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||+|..|+.+|..|.+.|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45679999999999999999999999999999853
No 398
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.052 Score=54.93 Aligned_cols=34 Identities=29% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 399
>PRK10262 thioredoxin reductase; Provisional
Probab=94.31 E-value=0.071 Score=51.12 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4589999999999999999999999999999965
No 400
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.30 E-value=0.053 Score=54.42 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~ 61 (491)
+++|+|||+|..||..|..|+++| ++|+.+|.+.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 357999999999999999999985 7899999754
No 401
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.26 E-value=0.061 Score=54.16 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999999854
No 402
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.18 E-value=0.069 Score=54.87 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34689999999999999999999999999998755
No 403
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.15 E-value=0.068 Score=55.37 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-.|..|++.|.+|+++++.+.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 468999999999999999999999999999998754
No 404
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.064 Score=54.21 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3579999999999999999999999999999865
No 405
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.03 E-value=0.073 Score=51.13 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|+|||||-.|.+.|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999998843
No 406
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.00 E-value=0.091 Score=46.37 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3568999999999999999999999999999764
No 407
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=0.057 Score=51.32 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=43.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS 72 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~ 72 (491)
+..+||+|||.|+.--..|...++.|.+|+=+|.+...||...|+..
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSm 52 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSM 52 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceee
Confidence 46899999999999999999999999999999999999999887654
No 408
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.91 E-value=0.082 Score=53.80 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
...+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3457999999999999999999999999999965
No 409
>PRK12831 putative oxidoreductase; Provisional
Probab=93.91 E-value=0.082 Score=53.41 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||||.+|+-+|..|.+.|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45689999999999999999999999999998744
No 410
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.84 E-value=0.093 Score=46.21 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
...+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35679999999999999999999999 59999984
No 411
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.81 E-value=0.077 Score=49.66 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|.|||.|..|.+.|..|.++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999854
No 412
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.76 E-value=0.082 Score=51.80 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|+|||.|..|+..|..|++ |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988885 99999999865
No 413
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.71 E-value=0.1 Score=55.67 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||||..|..-|+.++..|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 34579999999999999999999999999999865
No 414
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.64 E-value=0.1 Score=52.55 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.+.|+|+|.|-+|+++|..|++.|++|++.|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45799999999999999999999999999998654
No 415
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.61 E-value=0.11 Score=50.52 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~ 61 (491)
...|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35799999999999999999999997 99998743
No 416
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.55 E-value=0.1 Score=50.45 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~ 60 (491)
+++|+|||||-.|.++|+.|++.| .+|+|.+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999998 899999997
No 417
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.53 E-value=0.091 Score=53.36 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
-.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4569999999999999999999999999999874
No 418
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.48 E-value=0.13 Score=43.31 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEe
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLE 58 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE 58 (491)
...|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5679999999999999999999999999994
No 419
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.45 E-value=0.12 Score=48.84 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4589999999999999999999999999999854
No 420
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.43 E-value=0.051 Score=48.54 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCC
Q 011202 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~ 62 (491)
+.+||||||+|.+||-.|+.. ...|+++-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999986 457888877553
No 421
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.42 E-value=1.1 Score=46.73 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHHHHHh-ccCCeecCceeEEEEec-CCcE-EEEE---cCCc--EEEcCEEEEecc
Q 011202 230 PVINTLA-KGLDIRLGHRVTKITRH-YIGV-KVTV---EGGK--TFVADAVVVAVP 277 (491)
Q Consensus 230 ~l~~~l~-~gv~i~~~~~V~~I~~~-~~~v-~v~~---~~g~--~~~ad~VI~a~p 277 (491)
.|.+.+. .|++++.++.++++..+ +++| +|.. .+|+ .+.|+.||+||.
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 3444433 38999999999999875 4554 4542 3564 578999999995
No 422
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.41 E-value=0.1 Score=53.19 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|.|||+|..|..-|..|+++|++|+++|++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 45699999999999999999999999999998754
No 423
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.30 E-value=0.098 Score=52.95 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~-aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++|+|||.|-+|++ +|..|.++|++|++.|....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4567999999999999 59999999999999998653
No 424
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.29 E-value=0.096 Score=45.66 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.+...|.|||||..|--.|...+..|++|.++|++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 4567789999999999999999999999999999854
No 425
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.20 E-value=0.14 Score=48.78 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~ 62 (491)
++|+|||||..|.+.|+.|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 689999999999999999999876 8999998553
No 426
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.14 E-value=0.1 Score=49.37 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|+|+|..|...|+.|+++|..|+++=|.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999998888887754
No 427
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.13 E-value=0.21 Score=47.00 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+++|||.|..|+.+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46789999999999999999999999999999964
No 428
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.11 E-value=0.12 Score=52.14 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...|+|+|+|-+|+++|..|++.|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3569999999999999999999999999999754
No 429
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.03 E-value=0.074 Score=48.96 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~-G~-~V~vlE~~~ 61 (491)
...+++|+|||||-+|++.|..+.++ |. +|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 45789999999999999999999886 54 699998654
No 430
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.97 E-value=0.11 Score=52.21 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4579999999999999999995 9999999964
No 431
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.96 E-value=0.15 Score=45.87 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=28.7
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 29 ~dv~IIG-aGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
++|.||| +|..|.+.|..|+++|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999998764
No 432
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.95 E-value=0.18 Score=53.73 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.-.+|+|||||..|..-|+.++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44579999999999999999999999999999865
No 433
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.92 E-value=0.15 Score=50.00 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....|+|+|+|..|+.+|..|...|.+|+|+|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45689999999999999999999999999999854
No 434
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.85 E-value=0.18 Score=44.52 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.++|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34679999999999999999999999999999754
No 435
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.79 E-value=0.15 Score=48.17 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3579999999999999999999999999998854
No 436
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.76 E-value=0.23 Score=36.95 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=29.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~ 59 (491)
...+++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 456899999999999999999998 678999988
No 437
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.73 E-value=0.15 Score=51.78 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
.++|+|+|.|-+|+++|..|.+.|++|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 346999999999999999999999999999974
No 438
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.64 E-value=0.16 Score=47.56 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
..+|+|||||..|-.-|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 467999999999999999999988999999996
No 439
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.56 E-value=0.15 Score=52.16 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 440
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.11 Score=48.36 Aligned_cols=45 Identities=33% Similarity=0.359 Sum_probs=34.6
Q ss_pred hccccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 17 YSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 17 ~~~~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+.+-.-+--+.+||+|||||-||+-||.-|+--=..|+|+|=.+
T Consensus 343 yCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 343 YCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred eCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 333444444568899999999999999999986545799998644
No 441
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.50 E-value=0.24 Score=40.87 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=29.5
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++|+|||| |-.|-+.|+.|...+. ++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999875 699999864
No 442
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.48 E-value=0.18 Score=41.32 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
+.+|+|||+|-.|...|..|++.|. +++|+|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 4689999999999999999999998 6999998
No 443
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.40 E-value=0.15 Score=54.29 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||..|..-|+.++.+|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 4579999999999999999999999999999865
No 444
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.37 E-value=0.17 Score=47.81 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999999854
No 445
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.29 E-value=0.25 Score=47.15 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~ 62 (491)
...+|+|||||-.|-+.|+.|+..|. +|.++|.+..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45689999999999999999999996 8999998664
No 446
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.24 E-value=0.12 Score=50.46 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=31.8
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCc-EEEcCEEEEecchh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLG 279 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~ 279 (491)
|+++++++.|++|+.+ .|++.+|+ ++.++.+|.|+...
T Consensus 223 GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 223 GVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCc
Confidence 9999999999999765 35667776 59999999998753
No 447
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.24 E-value=0.21 Score=50.49 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
...+|+|||||.+|+-+|..|.+.|. +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35689999999999999999999998 899998743
No 448
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.16 E-value=0.2 Score=46.86 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+++|||+|-.|...|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999865
No 449
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.15 E-value=0.2 Score=50.47 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 34459999999999999999999999999999754
No 450
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.14 E-value=0.23 Score=45.66 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
...+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 35679999999999999999999995 7999997
No 451
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.06 E-value=0.22 Score=53.76 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~ 61 (491)
...+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 346899999999999999999999997 99998854
No 452
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.04 E-value=0.16 Score=47.87 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998864
No 453
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.94 E-value=0.24 Score=46.38 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..++|+|||+|-+|-++|+.|++.|. +|+|++++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34689999999999999999999997 799999864
No 454
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.91 E-value=0.24 Score=47.06 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~ 61 (491)
+|+|||+|-.|.+.|+.|+..| .+|.++|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 4799999865
No 455
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.91 E-value=0.19 Score=50.52 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.+|.|||.|..|...|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999999999999999999998754
No 456
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.88 E-value=0.2 Score=49.93 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+|+|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999754
No 457
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.70 E-value=0.24 Score=48.41 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.1
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIG-aGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
...+|+||| .|..|-+.|..|.++|+.|++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 456899999 8999999999999999999999984
No 458
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.69 E-value=0.2 Score=54.48 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHH-HHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAA-ARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~a-A~~L~~~G~~V~vlE~~~ 61 (491)
+...|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 44579999999999999 999999999999999754
No 459
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.68 E-value=0.2 Score=50.67 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
..+|.|||.|-+|+++|.+|.+.|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 347999999999999999999999999999964
No 460
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.54 E-value=0.23 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~-~~G~~V~vlE~~~ 61 (491)
...+|+|||||..|..-|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3457999999999999999998 5899999999865
No 461
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.37 E-value=0.3 Score=47.84 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 46689999999999999999999999999999855
No 462
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.36 E-value=0.33 Score=43.72 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFK---VVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~---V~vlE~~ 60 (491)
...+++|+|||-+|..+|..|.+.|.+ |.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 456899999999999999999999974 9999885
No 463
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.34 E-value=0.086 Score=50.62 Aligned_cols=35 Identities=40% Similarity=0.595 Sum_probs=29.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------CCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHD--------------ASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~--------------~G~~V~vlE~~~ 61 (491)
....++|||||++|.-.|.+|+. .-.+|+++|+.+
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 45679999999999999999974 236899999955
No 464
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.29 E-value=0.26 Score=45.77 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G---~~V~vlE~~~ 61 (491)
+++|.|||+|..|.+.|..|.+.| .+|.+++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 568999999999999999999998 6788888753
No 465
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.22 E-value=0.23 Score=40.56 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 31 v~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||..+...|..++..|++|+|+|-.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999864
No 466
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.21 E-value=0.31 Score=46.79 Aligned_cols=33 Identities=39% Similarity=0.609 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
...+|+|||+|-.|-.+|..|++.|. +++|+|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35679999999999999999999998 8999998
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.18 E-value=0.36 Score=42.40 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.2
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
...+++|+|| |-.|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999764
No 468
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.15 E-value=0.36 Score=45.77 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
+..+|+|||+|-.|-++|+.|...|. ++.++|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45689999999999999999998875 699999854
No 469
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.09 E-value=0.41 Score=37.89 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 31 v~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
|+|+|.|-.|...|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999997779999999763
No 470
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.08 E-value=0.3 Score=46.14 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|.|||.|..|...|..|.+.|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999865
No 471
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.07 E-value=0.31 Score=46.76 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
..+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5679999999999999999999998 79999983
No 472
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.02 E-value=0.4 Score=40.25 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
+..+++|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3568999999999999999999986 7899998854
No 473
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.00 E-value=0.25 Score=48.75 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=28.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+.|.|||.|-+|+++|..|. +|++|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 35899999999999999999 99999999954
No 474
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.89 E-value=0.38 Score=42.80 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
...+|+|||+|-.|...|..|++.|. +++++|.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35679999999999999999999998 4999998
No 475
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.85 E-value=0.37 Score=45.80 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
..+|+|||+|..|.+.|..|.+.|. +|++++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3579999999999999999999985 799998854
No 476
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.79 E-value=0.28 Score=52.33 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~-~~G~~V~vlE~~~ 61 (491)
-.+|+|||||..|..-|+.++ +.|++|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 467999999999999999999 8899999999854
No 477
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.78 E-value=0.3 Score=46.23 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 31 VIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 31 v~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
|+|||||..|...|+.|+.+|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999998876 999999864
No 478
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.72 E-value=0.4 Score=47.27 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=32.6
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+...+.|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 445678999998 9999999999999999999998854
No 479
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.71 E-value=0.32 Score=45.01 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
++|++||-|..|...|..|.++|+.|+|+++.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 3799999999999999999999999999999753
No 480
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.65 E-value=0.39 Score=44.66 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+++|+|+|-+|.+.|+.|++.|.+|+|+.++.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35679999999999999999999999999998753
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.58 E-value=0.31 Score=49.24 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3799999999999999999999999999998653
No 482
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.53 E-value=0.43 Score=45.52 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
..++|+|||||-.|-+.|+.|+..| .++.++|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4568999999999999999999988 5899999865
No 483
>PLN02256 arogenate dehydrogenase
Probab=90.49 E-value=0.43 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|+|||.|..|-+.|..|.+.|++|.++++++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 45689999999999999999999999999998754
No 484
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.49 E-value=0.47 Score=44.04 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+.|+|||.|..|-+-|..|.++|+.|.|+.+...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 356899999999999999999999999999998543
No 485
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.44 E-value=0.36 Score=48.53 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4579999999999999999999999999999754
No 486
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.34 E-value=0.39 Score=52.81 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||.+|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998864
No 487
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.30 E-value=0.35 Score=48.75 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 45789999999999999999999999999998743
No 488
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.29 E-value=0.43 Score=43.55 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
.+.+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35689999999999999999999997 7999987
No 489
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.23 E-value=0.48 Score=40.72 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 30 SVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
+|+|||+|-.|-..|..|++.|. +++++|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999998 4999998
No 490
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.19 E-value=0.43 Score=47.03 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 45689999999999999999999999999999855
No 491
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.14 E-value=0.46 Score=43.20 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
..+|+|||+|-.|..+|..|++.|. +++++|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5689999999999999999999997 6999988
No 492
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.05 E-value=0.4 Score=40.14 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=28.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.++|+|=|-.|-.+|..|+..|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 34679999999999999999999999999999955
No 493
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.02 E-value=0.83 Score=44.96 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999964
No 494
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.98 E-value=0.54 Score=44.71 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
...+|+|||+|-.|-++|+.|...|. ++.++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 35689999999999999999999987 799999854
No 495
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.97 E-value=0.44 Score=45.14 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|.|||.|..|...|..|.++|++|+++++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999998864
No 496
>PRK08017 oxidoreductase; Provisional
Probab=89.80 E-value=0.52 Score=43.30 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.|+|+|| |-.|...|..|.++|++|+++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46999999 9999999999999999999988753
No 497
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.78 E-value=0.54 Score=41.55 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
...+|+|||+|-.|..+|..|++.|. +++++|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDD 53 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Confidence 35689999999999999999999998 7999988
No 498
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.72 E-value=0.46 Score=41.46 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
++.+.|+|+|-.|-+.|..|+++|++|+|-=+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~ 32 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSS 32 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecC
Confidence 46799999999999999999999999987633
No 499
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.65 E-value=0.39 Score=48.16 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|.|||.|-+|+++|..|.++|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 37999999999999999999999999999754
No 500
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.64 E-value=0.67 Score=45.40 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 25 QARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 25 ~~~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
++..++|+|.|| |..|...+..|.+.|++|+++.+.
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 456788999999 999999999999999999999874
Done!