Query 011202
Match_columns 491
No_of_seqs 170 out of 2018
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3e_A Amine oxidase [flavin-c 100.0 2.8E-45 9.5E-50 374.5 38.6 417 26-462 2-454 (520)
2 2yg5_A Putrescine oxidase; oxi 100.0 1.7E-43 5.8E-48 355.6 34.5 417 28-462 5-451 (453)
3 4gut_A Lysine-specific histone 100.0 3.4E-42 1.2E-46 360.7 42.2 422 27-460 335-775 (776)
4 2z3y_A Lysine-specific histone 100.0 8.1E-42 2.8E-46 356.2 44.2 422 26-462 105-658 (662)
5 1rsg_A FMS1 protein; FAD bindi 100.0 1.3E-42 4.4E-47 354.0 36.3 425 27-464 7-509 (516)
6 2vvm_A Monoamine oxidase N; FA 100.0 1.5E-42 5E-47 352.6 34.8 409 29-462 40-485 (495)
7 2xag_A Lysine-specific histone 100.0 1.6E-41 5.5E-46 357.4 43.7 423 26-463 276-830 (852)
8 1b37_A Protein (polyamine oxid 100.0 1.7E-40 5.8E-45 335.0 42.2 424 27-464 3-460 (472)
9 3k7m_X 6-hydroxy-L-nicotine ox 100.0 1.6E-39 5.6E-44 324.5 35.5 401 28-460 1-424 (431)
10 2iid_A L-amino-acid oxidase; f 100.0 2.7E-39 9.1E-44 328.9 32.8 422 25-463 30-485 (498)
11 2jae_A L-amino acid oxidase; o 100.0 1.2E-37 4.1E-42 316.0 36.0 421 26-464 9-487 (489)
12 3i6d_A Protoporphyrinogen oxid 100.0 1E-38 3.5E-43 322.6 26.3 407 27-462 4-468 (470)
13 2ivd_A PPO, PPOX, protoporphyr 100.0 3.6E-38 1.2E-42 319.0 28.4 408 20-463 8-474 (478)
14 1sez_A Protoporphyrinogen oxid 100.0 1.2E-36 4.2E-41 309.8 28.2 407 25-462 10-493 (504)
15 3lov_A Protoporphyrinogen oxid 100.0 1.7E-36 5.7E-41 306.5 24.4 402 28-462 4-465 (475)
16 4dgk_A Phytoene dehydrogenase; 100.0 3.9E-36 1.3E-40 305.9 24.5 429 28-465 1-494 (501)
17 3ka7_A Oxidoreductase; structu 100.0 2.6E-35 9.1E-40 293.5 29.6 396 29-459 1-424 (425)
18 3ayj_A Pro-enzyme of L-phenyla 100.0 1.8E-35 6E-40 302.9 22.5 243 220-464 338-681 (721)
19 3qj4_A Renalase; FAD/NAD(P)-bi 100.0 2.3E-34 7.8E-39 278.1 26.3 323 28-461 1-341 (342)
20 3nks_A Protoporphyrinogen oxid 100.0 4.6E-35 1.6E-39 296.2 20.2 398 28-460 2-472 (477)
21 4gde_A UDP-galactopyranose mut 100.0 1.7E-34 5.9E-39 294.9 22.7 401 27-460 9-477 (513)
22 3nrn_A Uncharacterized protein 100.0 3.8E-33 1.3E-37 277.4 29.1 386 29-458 1-403 (421)
23 4dsg_A UDP-galactopyranose mut 100.0 9.3E-32 3.2E-36 270.5 25.6 401 27-459 8-452 (484)
24 2b9w_A Putative aminooxidase; 100.0 3E-29 1E-33 249.6 27.6 392 26-459 4-423 (424)
25 1yvv_A Amine oxidase, flavin-c 100.0 3.6E-27 1.2E-31 227.2 27.2 320 28-461 2-326 (336)
26 1v0j_A UDP-galactopyranose mut 99.9 9.4E-26 3.2E-30 221.4 15.0 248 25-320 4-275 (399)
27 1i8t_A UDP-galactopyranose mut 99.9 2.9E-24 1E-28 208.2 19.0 244 28-321 1-262 (367)
28 2bi7_A UDP-galactopyranose mut 99.9 3.6E-23 1.2E-27 201.7 20.1 233 28-316 3-260 (384)
29 3hdq_A UDP-galactopyranose mut 99.9 3.1E-22 1E-26 193.7 23.4 244 25-322 26-291 (397)
30 2bcg_G Secretory pathway GDP d 99.9 4.3E-21 1.5E-25 191.6 17.3 242 25-279 8-299 (453)
31 3kkj_A Amine oxidase, flavin-c 99.8 1.3E-18 4.6E-23 163.1 24.5 59 27-85 1-59 (336)
32 1d5t_A Guanine nucleotide diss 99.8 6.6E-19 2.3E-23 174.6 19.1 234 25-280 3-290 (433)
33 3p1w_A Rabgdi protein; GDI RAB 99.8 1.2E-18 4.1E-23 171.7 17.5 241 25-278 17-312 (475)
34 2e1m_A L-glutamate oxidase; L- 99.8 2.6E-18 8.9E-23 164.8 15.2 80 25-106 41-131 (376)
35 2e1m_C L-glutamate oxidase; L- 99.6 3.6E-16 1.2E-20 134.3 8.3 115 346-462 33-152 (181)
36 3dme_A Conserved exported prot 99.5 2E-12 6.9E-17 125.4 19.4 44 26-69 2-45 (369)
37 3oz2_A Digeranylgeranylglycero 99.5 4E-12 1.4E-16 124.6 21.0 38 28-65 4-41 (397)
38 1vg0_A RAB proteins geranylger 99.4 2.2E-12 7.5E-17 130.9 18.1 57 219-275 368-432 (650)
39 3nyc_A D-arginine dehydrogenas 99.4 6.2E-12 2.1E-16 122.6 18.4 50 230-280 159-209 (381)
40 3ihg_A RDME; flavoenzyme, anth 99.4 1.2E-11 4E-16 126.2 19.7 38 27-64 4-41 (535)
41 3rp8_A Flavoprotein monooxygen 99.4 1.7E-11 5.8E-16 120.7 18.6 50 231-281 133-182 (407)
42 1y56_B Sarcosine oxidase; dehy 99.4 3.7E-11 1.3E-15 117.2 20.2 49 231-280 155-205 (382)
43 1ryi_A Glycine oxidase; flavop 99.4 1E-11 3.5E-16 121.1 15.5 187 231-460 170-361 (382)
44 3ps9_A TRNA 5-methylaminomethy 99.3 8.3E-12 2.8E-16 130.8 15.1 52 229-280 421-473 (676)
45 2qa1_A PGAE, polyketide oxygen 99.3 8.1E-11 2.8E-15 118.5 21.2 42 23-64 6-47 (500)
46 3fmw_A Oxygenase; mithramycin, 99.3 4E-11 1.4E-15 122.4 19.1 50 231-280 154-207 (570)
47 3dje_A Fructosyl amine: oxygen 99.3 1.9E-11 6.7E-16 121.5 16.0 52 229-280 165-221 (438)
48 2qa2_A CABE, polyketide oxygen 99.3 1.9E-10 6.5E-15 115.8 23.0 44 238-281 121-167 (499)
49 3v76_A Flavoprotein; structura 99.3 1.2E-11 4.1E-16 121.2 13.7 43 26-68 25-67 (417)
50 2gf3_A MSOX, monomeric sarcosi 99.3 7.7E-11 2.6E-15 115.2 19.5 50 230-280 155-205 (389)
51 2oln_A NIKD protein; flavoprot 99.3 6.4E-10 2.2E-14 108.9 25.9 50 229-279 157-207 (397)
52 3cgv_A Geranylgeranyl reductas 99.3 1.9E-10 6.7E-15 112.6 21.3 38 28-65 4-41 (397)
53 3pvc_A TRNA 5-methylaminomethy 99.3 2.2E-11 7.5E-16 127.7 14.4 51 230-280 417-469 (689)
54 3i3l_A Alkylhalidase CMLS; fla 99.3 1.9E-11 6.4E-16 125.1 13.2 37 28-64 23-59 (591)
55 3nix_A Flavoprotein/dehydrogen 99.3 6.9E-11 2.4E-15 116.8 16.6 36 28-63 5-40 (421)
56 3atr_A Conserved archaeal prot 99.2 1.9E-10 6.6E-15 114.6 16.6 37 27-63 5-41 (453)
57 4hb9_A Similarities with proba 99.2 2.3E-09 7.8E-14 105.4 23.8 51 231-281 114-167 (412)
58 3e1t_A Halogenase; flavoprotei 99.2 1.6E-10 5.4E-15 117.0 14.1 36 27-62 6-41 (512)
59 2vou_A 2,6-dihydroxypyridine h 99.2 2E-10 7E-15 112.5 13.8 45 237-281 110-154 (397)
60 2uzz_A N-methyl-L-tryptophan o 99.2 1.4E-10 4.7E-15 112.7 12.3 51 229-280 153-204 (372)
61 2i0z_A NAD(FAD)-utilizing dehy 99.1 1.1E-10 3.8E-15 116.1 10.3 41 27-67 25-65 (447)
62 2xdo_A TETX2 protein; tetracyc 99.1 4.4E-10 1.5E-14 110.1 14.2 44 238-281 140-183 (398)
63 2gqf_A Hypothetical protein HI 99.1 4.4E-10 1.5E-14 109.8 13.4 41 28-68 4-44 (401)
64 2gag_B Heterotetrameric sarcos 99.1 6.9E-11 2.4E-15 116.2 7.7 50 230-280 179-230 (405)
65 4ap3_A Steroid monooxygenase; 99.1 3.3E-10 1.1E-14 115.1 12.6 53 26-78 19-71 (549)
66 4at0_A 3-ketosteroid-delta4-5a 99.1 4.6E-10 1.6E-14 113.5 13.7 43 26-68 39-81 (510)
67 1w4x_A Phenylacetone monooxyge 99.1 4E-10 1.4E-14 114.8 13.2 45 26-70 14-58 (542)
68 3da1_A Glycerol-3-phosphate de 99.1 3.7E-10 1.3E-14 115.2 12.8 42 27-68 17-58 (561)
69 1y0p_A Fumarate reductase flav 99.1 1.1E-09 3.9E-14 112.2 16.3 42 27-68 125-166 (571)
70 3gwf_A Cyclohexanone monooxyge 99.1 4.7E-10 1.6E-14 113.7 12.5 53 27-79 7-60 (540)
71 1qo8_A Flavocytochrome C3 fuma 99.1 1E-09 3.5E-14 112.4 14.9 42 27-68 120-161 (566)
72 2gmh_A Electron transfer flavo 99.1 3.6E-09 1.2E-13 108.5 18.8 41 26-66 33-79 (584)
73 2zbw_A Thioredoxin reductase; 99.1 5.6E-10 1.9E-14 106.6 11.8 42 27-68 4-45 (335)
74 3nlc_A Uncharacterized protein 99.1 3.9E-10 1.3E-14 113.6 10.5 42 27-68 106-147 (549)
75 2rgh_A Alpha-glycerophosphate 99.1 4.6E-09 1.6E-13 107.4 18.5 39 27-65 31-69 (571)
76 2qcu_A Aerobic glycerol-3-phos 99.1 1.5E-08 5.1E-13 102.2 21.7 38 28-65 3-40 (501)
77 3ab1_A Ferredoxin--NADP reduct 99.0 9.5E-10 3.3E-14 106.2 12.1 43 26-68 12-54 (360)
78 3f8d_A Thioredoxin reductase ( 99.0 1E-09 3.5E-14 104.1 11.2 42 26-69 13-54 (323)
79 2x3n_A Probable FAD-dependent 99.0 5.4E-10 1.9E-14 109.5 9.4 51 230-280 112-166 (399)
80 4a9w_A Monooxygenase; baeyer-v 99.0 1.8E-09 6.2E-14 103.9 12.6 41 28-68 3-43 (357)
81 1rp0_A ARA6, thiazole biosynth 99.0 8.8E-10 3E-14 102.5 9.8 41 27-67 38-79 (284)
82 2gv8_A Monooxygenase; FMO, FAD 99.0 2.8E-09 9.4E-14 106.1 13.7 44 26-69 4-49 (447)
83 3lzw_A Ferredoxin--NADP reduct 99.0 9.9E-10 3.4E-14 104.7 10.0 41 28-68 7-47 (332)
84 3uox_A Otemo; baeyer-villiger 99.0 1E-09 3.5E-14 111.4 10.5 48 27-74 8-55 (545)
85 1pj5_A N,N-dimethylglycine oxi 99.0 1E-09 3.5E-14 117.7 11.0 50 230-280 156-207 (830)
86 2dkh_A 3-hydroxybenzoate hydro 99.0 7.7E-09 2.6E-13 107.3 17.2 38 27-64 31-69 (639)
87 3itj_A Thioredoxin reductase 1 98.9 2.5E-09 8.6E-14 102.1 9.7 44 25-68 19-66 (338)
88 1k0i_A P-hydroxybenzoate hydro 98.9 1.1E-09 3.8E-14 107.1 7.3 51 231-281 109-164 (394)
89 4a5l_A Thioredoxin reductase; 98.9 4.8E-09 1.7E-13 99.1 11.5 41 25-66 1-41 (314)
90 3c96_A Flavin-containing monoo 98.9 3.4E-09 1.2E-13 104.2 10.8 38 27-64 3-41 (410)
91 3jsk_A Cypbp37 protein; octame 98.9 3.8E-09 1.3E-13 99.2 10.2 42 27-68 78-121 (344)
92 3axb_A Putative oxidoreductase 98.9 6.4E-10 2.2E-14 110.8 5.3 39 27-65 22-61 (448)
93 2e1m_B L-glutamate oxidase; L- 98.9 5.7E-11 2E-15 94.3 -2.0 108 265-387 4-112 (130)
94 3alj_A 2-methyl-3-hydroxypyrid 98.9 4.2E-09 1.4E-13 102.4 10.6 38 28-65 11-48 (379)
95 2r0c_A REBC; flavin adenine di 98.9 3.5E-09 1.2E-13 108.0 9.8 38 27-64 25-62 (549)
96 1d4d_A Flavocytochrome C fumar 98.9 7.9E-09 2.7E-13 105.8 12.2 42 27-68 125-166 (572)
97 2q0l_A TRXR, thioredoxin reduc 98.9 1.2E-08 4E-13 96.3 12.4 40 28-68 1-41 (311)
98 3o0h_A Glutathione reductase; 98.9 3.9E-08 1.3E-12 98.8 15.9 48 231-278 238-286 (484)
99 2q7v_A Thioredoxin reductase; 98.9 1.2E-08 4E-13 96.9 11.5 42 26-68 6-47 (325)
100 3fpz_A Thiazole biosynthetic e 98.8 1.6E-09 5.6E-14 103.0 4.5 69 27-105 64-134 (326)
101 2cul_A Glucose-inhibited divis 98.8 2.9E-08 1E-12 89.2 12.2 35 27-61 2-36 (232)
102 3d1c_A Flavin-containing putat 98.8 1E-08 3.6E-13 99.2 9.8 40 28-68 4-44 (369)
103 2bry_A NEDD9 interacting prote 98.8 8.8E-09 3E-13 103.5 9.6 40 26-65 90-129 (497)
104 2ywl_A Thioredoxin reductase r 98.8 2.8E-08 9.6E-13 85.5 11.5 39 238-278 70-108 (180)
105 3fbs_A Oxidoreductase; structu 98.8 3.2E-08 1.1E-12 92.5 12.7 36 27-62 1-36 (297)
106 2gjc_A Thiazole biosynthetic e 98.8 1.5E-08 5E-13 94.7 10.1 41 28-68 65-107 (326)
107 3lxd_A FAD-dependent pyridine 98.8 5.8E-08 2E-12 95.5 14.5 48 231-278 200-249 (415)
108 2xve_A Flavin-containing monoo 98.8 2E-08 6.9E-13 100.1 11.2 42 28-69 2-49 (464)
109 2bs2_A Quinol-fumarate reducta 98.8 1.1E-07 3.8E-12 98.2 16.9 40 28-67 5-44 (660)
110 1pn0_A Phenol 2-monooxygenase; 98.8 9.7E-08 3.3E-12 99.3 16.1 35 28-62 8-47 (665)
111 2wdq_A Succinate dehydrogenase 98.8 8.2E-08 2.8E-12 98.3 14.9 40 28-67 7-46 (588)
112 3oc4_A Oxidoreductase, pyridin 98.8 2.3E-08 7.8E-13 99.5 10.5 48 230-278 194-242 (452)
113 1trb_A Thioredoxin reductase; 98.8 2.5E-08 8.6E-13 94.4 10.4 40 27-67 4-43 (320)
114 2a87_A TRXR, TR, thioredoxin r 98.8 3.5E-08 1.2E-12 94.1 11.1 42 25-67 11-52 (335)
115 2h88_A Succinate dehydrogenase 98.8 1.5E-07 5.2E-12 96.5 16.4 40 27-66 17-56 (621)
116 3r9u_A Thioredoxin reductase; 98.7 3.3E-08 1.1E-12 93.3 10.6 41 27-68 3-44 (315)
117 4gcm_A TRXR, thioredoxin reduc 98.7 5.7E-09 1.9E-13 98.6 5.1 44 24-68 1-45 (312)
118 1vdc_A NTR, NADPH dependent th 98.7 3.7E-08 1.3E-12 93.8 9.3 39 28-66 8-50 (333)
119 2weu_A Tryptophan 5-halogenase 98.7 1.3E-07 4.3E-12 95.8 12.7 43 238-281 187-231 (511)
120 3fg2_P Putative rubredoxin red 98.7 8.6E-08 2.9E-12 93.9 11.0 48 231-278 190-239 (404)
121 2zxi_A TRNA uridine 5-carboxym 98.7 3.5E-08 1.2E-12 99.9 8.2 39 27-65 26-65 (637)
122 1chu_A Protein (L-aspartate ox 98.7 1E-07 3.5E-12 96.7 11.5 40 27-67 7-46 (540)
123 1fl2_A Alkyl hydroperoxide red 98.7 7.3E-08 2.5E-12 90.7 9.8 39 28-68 1-39 (310)
124 2aqj_A Tryptophan halogenase, 98.7 2.1E-07 7.1E-12 94.7 13.8 43 238-281 179-223 (538)
125 3iwa_A FAD-dependent pyridine 98.7 1.2E-08 4E-13 102.2 4.5 48 231-278 208-256 (472)
126 1kf6_A Fumarate reductase flav 98.6 4E-07 1.4E-11 93.5 15.6 39 28-66 5-45 (602)
127 3s5w_A L-ornithine 5-monooxyge 98.6 1.2E-07 4.1E-12 94.7 11.4 38 27-64 29-71 (463)
128 2v3a_A Rubredoxin reductase; a 98.6 9.3E-09 3.2E-13 100.1 2.9 50 229-278 191-241 (384)
129 3ces_A MNMG, tRNA uridine 5-ca 98.6 4.3E-08 1.5E-12 99.6 7.6 38 27-64 27-65 (651)
130 4fk1_A Putative thioredoxin re 98.6 2.9E-08 1E-12 93.2 5.0 39 27-66 5-43 (304)
131 2e5v_A L-aspartate oxidase; ar 98.6 3.1E-07 1.1E-11 91.6 12.1 36 30-66 1-36 (472)
132 1hyu_A AHPF, alkyl hydroperoxi 98.6 2.4E-07 8.1E-12 93.7 11.4 40 27-68 211-250 (521)
133 3ics_A Coenzyme A-disulfide re 98.6 2E-07 6.8E-12 96.0 10.6 58 5-64 15-74 (588)
134 1c0p_A D-amino acid oxidase; a 98.5 8E-08 2.7E-12 92.7 6.1 41 25-65 3-43 (363)
135 1jnr_A Adenylylsulfate reducta 98.5 2.6E-06 9E-11 88.2 17.7 36 27-62 21-60 (643)
136 3gyx_A Adenylylsulfate reducta 98.5 1.7E-06 5.7E-11 89.5 16.0 37 28-64 22-64 (662)
137 3klj_A NAD(FAD)-dependent dehy 98.5 4.3E-07 1.5E-11 88.0 11.1 38 27-64 8-45 (385)
138 3urh_A Dihydrolipoyl dehydroge 98.5 7.3E-08 2.5E-12 97.0 5.1 43 26-68 23-65 (491)
139 3l8k_A Dihydrolipoyl dehydroge 98.5 5.3E-08 1.8E-12 97.3 3.7 43 26-68 2-44 (466)
140 3qfa_A Thioredoxin reductase 1 98.5 9.9E-08 3.4E-12 96.5 5.4 59 10-68 14-80 (519)
141 3cty_A Thioredoxin reductase; 98.5 9.1E-08 3.1E-12 90.5 4.8 43 25-68 13-55 (319)
142 3h8l_A NADH oxidase; membrane 98.5 5.4E-07 1.8E-11 88.4 10.4 35 28-62 1-38 (409)
143 4dna_A Probable glutathione re 98.4 1.4E-07 4.7E-12 94.2 4.4 41 27-68 4-44 (463)
144 2qae_A Lipoamide, dihydrolipoy 98.4 1.9E-07 6.6E-12 93.3 4.8 42 27-68 1-42 (468)
145 2vdc_G Glutamate synthase [NAD 98.4 2.2E-07 7.7E-12 92.0 5.2 42 27-68 121-162 (456)
146 1mo9_A ORF3; nucleotide bindin 98.4 2.7E-07 9.2E-12 93.5 5.6 44 25-68 40-83 (523)
147 3ntd_A FAD-dependent pyridine 98.4 1E-06 3.5E-11 90.3 10.0 37 28-64 1-39 (565)
148 1dxl_A Dihydrolipoamide dehydr 98.4 2.7E-07 9.4E-12 92.3 5.2 44 25-68 3-46 (470)
149 3lad_A Dihydrolipoamide dehydr 98.3 2.9E-07 1E-11 92.2 5.2 41 27-67 2-42 (476)
150 3g3e_A D-amino-acid oxidase; F 98.3 1.8E-07 6.3E-12 89.7 3.4 37 29-65 1-43 (351)
151 1zk7_A HGII, reductase, mercur 98.3 3.3E-07 1.1E-11 91.6 5.3 42 26-68 2-43 (467)
152 2r9z_A Glutathione amide reduc 98.3 3E-07 1E-11 91.7 4.8 42 26-68 2-43 (463)
153 1ojt_A Surface protein; redox- 98.3 2.2E-07 7.5E-12 93.2 3.7 44 25-68 3-46 (482)
154 1v59_A Dihydrolipoamide dehydr 98.3 1.9E-07 6.5E-12 93.6 3.1 42 27-68 4-45 (478)
155 1ges_A Glutathione reductase; 98.3 2.7E-07 9.4E-12 91.6 3.9 42 26-68 2-43 (450)
156 1zmd_A Dihydrolipoyl dehydroge 98.3 3E-07 1E-11 92.0 4.2 42 27-68 5-46 (474)
157 3k30_A Histamine dehydrogenase 98.3 3.6E-07 1.2E-11 95.7 4.5 45 25-69 388-432 (690)
158 3dk9_A Grase, GR, glutathione 98.3 3.3E-07 1.1E-11 91.8 4.0 42 26-68 18-59 (478)
159 2yqu_A 2-oxoglutarate dehydrog 98.3 4.2E-07 1.4E-11 90.5 4.7 41 28-68 1-41 (455)
160 3ihm_A Styrene monooxygenase A 98.3 4.5E-07 1.5E-11 89.5 4.5 35 27-61 21-55 (430)
161 3dgz_A Thioredoxin reductase 2 98.3 4.5E-07 1.5E-11 91.1 4.5 43 26-68 4-54 (488)
162 2wpf_A Trypanothione reductase 98.3 3.2E-07 1.1E-11 92.2 3.3 44 25-68 4-56 (495)
163 3c4n_A Uncharacterized protein 98.3 4.7E-07 1.6E-11 88.6 4.2 38 28-65 36-75 (405)
164 2hqm_A GR, grase, glutathione 98.2 4.7E-07 1.6E-11 90.7 4.1 41 27-68 10-50 (479)
165 4b63_A L-ornithine N5 monooxyg 98.2 1.4E-06 4.9E-11 87.5 7.3 39 27-65 38-76 (501)
166 1xdi_A RV3303C-LPDA; reductase 98.2 4E-07 1.4E-11 91.7 3.2 48 231-278 229-277 (499)
167 1onf_A GR, grase, glutathione 98.2 6.9E-07 2.3E-11 90.0 4.8 41 27-68 1-41 (500)
168 3ic9_A Dihydrolipoamide dehydr 98.2 5.6E-07 1.9E-11 90.4 4.0 40 28-68 8-47 (492)
169 3c4a_A Probable tryptophan hyd 98.2 8.8E-07 3E-11 86.0 5.1 35 29-63 1-37 (381)
170 1fec_A Trypanothione reductase 98.2 6.7E-07 2.3E-11 89.7 4.2 48 231-278 237-286 (490)
171 1o94_A Tmadh, trimethylamine d 98.2 1E-06 3.4E-11 92.8 5.6 44 26-69 387-430 (729)
172 1lvl_A Dihydrolipoamide dehydr 98.2 6.4E-07 2.2E-11 89.1 3.7 41 27-68 4-44 (458)
173 1ebd_A E3BD, dihydrolipoamide 98.2 8.9E-07 3.1E-11 88.1 4.3 41 27-68 2-42 (455)
174 3dgh_A TRXR-1, thioredoxin red 98.2 1.1E-06 3.9E-11 88.0 5.0 43 26-68 7-58 (483)
175 3g5s_A Methylenetetrahydrofola 98.2 1.8E-06 6.3E-11 81.5 5.7 40 28-67 1-40 (443)
176 3pl8_A Pyranose 2-oxidase; sub 98.1 1.3E-06 4.4E-11 90.0 5.0 42 26-67 44-85 (623)
177 2eq6_A Pyruvate dehydrogenase 98.1 1.2E-06 4E-11 87.4 4.6 40 28-68 6-45 (464)
178 2a8x_A Dihydrolipoyl dehydroge 98.1 1.4E-06 4.7E-11 86.9 4.2 40 28-68 3-42 (464)
179 2yqu_A 2-oxoglutarate dehydrog 98.1 1.9E-05 6.5E-10 78.4 12.3 41 238-278 222-262 (455)
180 1ps9_A 2,4-dienoyl-COA reducta 98.1 2.8E-06 9.7E-11 88.6 5.9 43 26-68 371-413 (671)
181 2pyx_A Tryptophan halogenase; 98.0 2.9E-06 9.8E-11 86.0 5.2 50 231-281 181-234 (526)
182 3cp8_A TRNA uridine 5-carboxym 98.0 2.9E-06 9.8E-11 86.3 4.9 40 26-65 19-59 (641)
183 3h28_A Sulfide-quinone reducta 98.0 2.7E-06 9.3E-11 83.9 4.5 39 28-66 2-42 (430)
184 3cgb_A Pyridine nucleotide-dis 98.0 2.9E-06 9.8E-11 85.0 4.7 60 4-65 14-75 (480)
185 1ges_A Glutathione reductase; 98.0 3.7E-05 1.3E-09 76.2 12.5 41 238-278 222-263 (450)
186 2e4g_A Tryptophan halogenase; 98.0 4.3E-06 1.5E-10 85.1 5.9 50 231-281 200-253 (550)
187 1lqt_A FPRA; NADP+ derivative, 98.0 2.2E-06 7.6E-11 84.9 3.3 41 28-68 3-50 (456)
188 2gag_A Heterotetrameric sarcos 98.0 3.3E-06 1.1E-10 91.5 4.8 41 28-68 128-168 (965)
189 1gte_A Dihydropyrimidine dehyd 98.0 4.4E-06 1.5E-10 91.2 5.7 42 27-68 186-228 (1025)
190 4b1b_A TRXR, thioredoxin reduc 98.0 3.3E-06 1.1E-10 85.2 4.3 47 231-277 269-316 (542)
191 2r9z_A Glutathione amide reduc 98.0 4.4E-05 1.5E-09 75.9 12.4 42 237-278 220-262 (463)
192 2eq6_A Pyruvate dehydrogenase 98.0 4.2E-05 1.4E-09 76.1 12.2 36 28-63 169-204 (464)
193 1y56_A Hypothetical protein PH 98.0 2.1E-06 7.3E-11 86.1 2.6 41 28-69 108-148 (493)
194 3ef6_A Toluene 1,2-dioxygenase 98.0 5.7E-05 1.9E-09 73.9 12.6 41 238-278 199-239 (410)
195 1cjc_A Protein (adrenodoxin re 98.0 4E-06 1.4E-10 83.2 4.1 42 27-68 5-48 (460)
196 2x8g_A Thioredoxin glutathione 98.0 4.7E-06 1.6E-10 85.9 4.7 34 26-59 105-138 (598)
197 3ef6_A Toluene 1,2-dioxygenase 97.9 7.6E-06 2.6E-10 80.1 5.8 37 28-64 2-40 (410)
198 1q1r_A Putidaredoxin reductase 97.9 7.7E-06 2.6E-10 80.6 5.7 48 231-278 197-248 (431)
199 3kd9_A Coenzyme A disulfide re 97.9 5.8E-06 2E-10 82.0 4.8 39 28-66 3-43 (449)
200 2hqm_A GR, grase, glutathione 97.9 9E-05 3.1E-09 74.0 12.4 41 238-278 240-283 (479)
201 1q1r_A Putidaredoxin reductase 97.9 0.00012 4.1E-09 72.0 13.1 36 28-63 149-184 (431)
202 1ebd_A E3BD, dihydrolipoamide 97.9 6.4E-05 2.2E-09 74.6 11.2 36 28-63 170-205 (455)
203 3sx6_A Sulfide-quinone reducta 97.9 7.8E-06 2.7E-10 80.8 4.2 38 26-63 2-42 (437)
204 1xdi_A RV3303C-LPDA; reductase 97.8 0.00011 3.9E-09 73.7 12.4 36 28-63 182-217 (499)
205 1nhp_A NADH peroxidase; oxidor 97.8 9.9E-05 3.4E-09 73.0 11.7 37 27-63 148-184 (447)
206 2cdu_A NADPH oxidase; flavoenz 97.8 1.2E-05 4E-10 79.9 4.7 37 29-65 1-39 (452)
207 1onf_A GR, grase, glutathione 97.8 0.00013 4.4E-09 73.3 12.3 42 237-278 230-273 (500)
208 3t37_A Probable dehydrogenase; 97.8 9.6E-06 3.3E-10 82.2 4.1 36 26-61 15-51 (526)
209 1nhp_A NADH peroxidase; oxidor 97.8 1.3E-05 4.4E-10 79.5 4.8 36 29-64 1-38 (447)
210 1v59_A Dihydrolipoamide dehydr 97.8 9.1E-05 3.1E-09 74.0 11.0 36 28-63 183-218 (478)
211 2bc0_A NADH oxidase; flavoprot 97.8 9.4E-06 3.2E-10 81.4 3.8 39 27-65 34-75 (490)
212 2gqw_A Ferredoxin reductase; f 97.8 1.6E-05 5.6E-10 77.7 5.2 38 27-64 6-45 (408)
213 2gqw_A Ferredoxin reductase; f 97.8 0.00018 6.1E-09 70.2 12.7 35 28-62 145-179 (408)
214 1ojt_A Surface protein; redox- 97.8 8.3E-05 2.9E-09 74.3 10.5 41 238-278 240-284 (482)
215 3ic9_A Dihydrolipoamide dehydr 97.8 0.00018 6.2E-09 72.1 12.5 35 28-62 174-208 (492)
216 1mo9_A ORF3; nucleotide bindin 97.8 0.00013 4.6E-09 73.6 11.6 42 237-278 268-314 (523)
217 2a8x_A Dihydrolipoyl dehydroge 97.7 0.00019 6.4E-09 71.4 12.2 35 28-62 171-205 (464)
218 2wpf_A Trypanothione reductase 97.7 0.00016 5.6E-09 72.4 11.9 42 237-278 248-290 (495)
219 1m6i_A Programmed cell death p 97.7 1.6E-05 5.3E-10 79.8 4.3 48 231-278 232-280 (493)
220 2cdu_A NADPH oxidase; flavoenz 97.7 0.00019 6.6E-09 71.1 12.2 35 28-62 149-183 (452)
221 1kdg_A CDH, cellobiose dehydro 97.7 2E-05 6.8E-10 80.2 5.0 38 26-63 5-42 (546)
222 1fec_A Trypanothione reductase 97.7 0.00017 5.6E-09 72.3 11.5 36 28-63 187-225 (490)
223 1ju2_A HydroxynitrIle lyase; f 97.7 1E-05 3.4E-10 82.0 2.5 39 25-64 23-61 (536)
224 4b1b_A TRXR, thioredoxin reduc 97.7 0.00023 7.8E-09 71.8 12.1 34 28-61 223-256 (542)
225 1zmd_A Dihydrolipoyl dehydroge 97.7 0.00018 6.2E-09 71.7 11.4 36 28-63 178-213 (474)
226 2qae_A Lipoamide, dihydrolipoy 97.7 0.00023 7.9E-09 70.8 12.1 35 28-62 174-208 (468)
227 1lvl_A Dihydrolipoamide dehydr 97.7 0.00011 3.8E-09 72.9 9.6 35 28-62 171-205 (458)
228 1xhc_A NADH oxidase /nitrite r 97.7 2.7E-05 9.3E-10 74.8 4.6 35 28-63 8-42 (367)
229 3ntd_A FAD-dependent pyridine 97.7 0.00031 1.1E-08 71.8 12.7 34 28-61 151-184 (565)
230 2bc0_A NADH oxidase; flavoprot 97.6 0.00037 1.3E-08 69.7 12.6 36 27-62 193-228 (490)
231 1dxl_A Dihydrolipoamide dehydr 97.6 0.0002 6.8E-09 71.4 10.1 35 28-62 177-211 (470)
232 3hyw_A Sulfide-quinone reducta 97.6 3.6E-05 1.2E-09 75.8 4.4 35 28-62 2-38 (430)
233 1zk7_A HGII, reductase, mercur 97.6 0.00045 1.5E-08 68.7 12.3 41 237-278 229-269 (467)
234 3lad_A Dihydrolipoamide dehydr 97.6 0.00052 1.8E-08 68.5 12.3 41 238-278 235-278 (476)
235 4eqs_A Coenzyme A disulfide re 97.6 4.6E-05 1.6E-09 75.1 4.5 45 229-277 192-237 (437)
236 4g6h_A Rotenone-insensitive NA 97.5 4.5E-05 1.5E-09 76.5 4.4 36 26-61 40-75 (502)
237 1n4w_A CHOD, cholesterol oxida 97.5 5.4E-05 1.8E-09 76.1 4.9 38 27-64 4-41 (504)
238 1m6i_A Programmed cell death p 97.5 0.0005 1.7E-08 68.8 11.8 35 28-62 180-218 (493)
239 3urh_A Dihydrolipoyl dehydroge 97.5 0.00041 1.4E-08 69.5 10.9 35 28-62 198-232 (491)
240 3q9t_A Choline dehydrogenase a 97.5 5.2E-05 1.8E-09 77.1 4.2 37 26-62 4-41 (577)
241 3cgb_A Pyridine nucleotide-dis 97.5 0.00042 1.4E-08 69.1 10.7 36 27-62 185-220 (480)
242 4dna_A Probable glutathione re 97.5 0.00061 2.1E-08 67.7 11.7 40 238-278 225-266 (463)
243 3vrd_B FCCB subunit, flavocyto 97.5 6.5E-05 2.2E-09 73.2 4.3 41 238-278 216-256 (401)
244 3ics_A Coenzyme A-disulfide re 97.4 0.0008 2.7E-08 69.0 11.9 35 28-62 187-221 (588)
245 1coy_A Cholesterol oxidase; ox 97.4 0.0001 3.6E-09 74.0 5.1 37 26-62 9-45 (507)
246 3qvp_A Glucose oxidase; oxidor 97.4 8E-05 2.7E-09 75.6 4.1 36 26-61 17-53 (583)
247 3dk9_A Grase, GR, glutathione 97.4 0.001 3.4E-08 66.4 11.8 35 28-62 187-221 (478)
248 1gpe_A Protein (glucose oxidas 97.3 0.00012 4E-09 75.0 4.5 37 27-63 23-60 (587)
249 3kd9_A Coenzyme A disulfide re 97.3 0.0012 4E-08 65.3 11.6 35 28-62 148-182 (449)
250 3dgh_A TRXR-1, thioredoxin red 97.3 0.0016 5.5E-08 65.0 12.5 32 28-59 187-218 (483)
251 2jbv_A Choline oxidase; alcoho 97.3 0.00013 4.6E-09 73.9 4.5 38 27-64 12-50 (546)
252 3fim_B ARYL-alcohol oxidase; A 97.3 9.4E-05 3.2E-09 75.0 3.0 36 28-63 2-38 (566)
253 3l8k_A Dihydrolipoyl dehydroge 97.3 0.0016 5.6E-08 64.6 11.9 35 28-62 172-206 (466)
254 4eqs_A Coenzyme A disulfide re 97.3 0.0017 6E-08 63.7 11.7 36 28-63 147-182 (437)
255 1trb_A Thioredoxin reductase; 97.3 0.002 6.7E-08 60.3 11.7 34 28-61 145-178 (320)
256 3s5w_A L-ornithine 5-monooxyge 97.3 0.00041 1.4E-08 68.9 7.3 41 238-278 330-375 (463)
257 3dgz_A Thioredoxin reductase 2 97.2 0.0025 8.5E-08 63.7 12.2 33 28-60 185-217 (488)
258 3itj_A Thioredoxin reductase 1 97.1 0.0024 8.1E-08 60.2 10.2 34 28-61 173-206 (338)
259 2zbw_A Thioredoxin reductase; 97.0 0.0033 1.1E-07 59.2 10.6 34 28-61 152-185 (335)
260 3lzw_A Ferredoxin--NADP reduct 96.8 0.0051 1.7E-07 57.7 9.6 34 28-61 154-187 (332)
261 3f8d_A Thioredoxin reductase ( 96.8 0.007 2.4E-07 56.4 10.5 34 28-61 154-187 (323)
262 3qfa_A Thioredoxin reductase 1 96.7 0.011 3.6E-07 59.5 12.2 32 28-59 210-241 (519)
263 3fwz_A Inner membrane protein 96.5 0.0041 1.4E-07 50.3 6.2 36 26-61 5-40 (140)
264 1lss_A TRK system potassium up 96.5 0.0027 9.1E-08 51.2 5.0 34 28-61 4-37 (140)
265 4gcm_A TRXR, thioredoxin reduc 96.4 0.0025 8.5E-08 59.5 4.9 35 28-62 145-179 (312)
266 3ic5_A Putative saccharopine d 96.4 0.0029 9.9E-08 49.2 4.5 35 27-61 4-39 (118)
267 3klj_A NAD(FAD)-dependent dehy 96.4 0.0024 8.1E-08 61.6 4.7 36 29-64 147-182 (385)
268 2g1u_A Hypothetical protein TM 96.4 0.0037 1.3E-07 51.6 5.2 35 27-61 18-52 (155)
269 4g6h_A Rotenone-insensitive NA 96.4 0.0082 2.8E-07 60.0 8.7 41 238-278 286-330 (502)
270 3llv_A Exopolyphosphatase-rela 96.3 0.0047 1.6E-07 50.0 5.3 34 28-61 6-39 (141)
271 3k30_A Histamine dehydrogenase 96.2 0.01 3.4E-07 62.0 8.3 37 27-63 522-560 (690)
272 2x5o_A UDP-N-acetylmuramoylala 96.2 0.0048 1.7E-07 60.6 5.4 37 28-64 5-41 (439)
273 2v3a_A Rubredoxin reductase; a 96.1 0.0058 2E-07 58.9 5.7 37 28-64 145-181 (384)
274 1xhc_A NADH oxidase /nitrite r 96.0 0.0054 1.8E-07 58.7 4.9 35 29-63 144-178 (367)
275 4a5l_A Thioredoxin reductase; 96.0 0.0057 1.9E-07 56.9 4.8 34 28-61 152-185 (314)
276 3lk7_A UDP-N-acetylmuramoylala 96.0 0.0056 1.9E-07 60.3 4.8 34 28-61 9-42 (451)
277 1f0y_A HCDH, L-3-hydroxyacyl-C 95.9 0.0076 2.6E-07 55.9 5.3 34 28-61 15-48 (302)
278 3i83_A 2-dehydropantoate 2-red 95.9 0.007 2.4E-07 56.7 4.9 34 28-61 2-35 (320)
279 3k6j_A Protein F01G10.3, confi 95.9 0.0074 2.5E-07 58.9 5.1 36 27-62 53-88 (460)
280 4e12_A Diketoreductase; oxidor 95.8 0.0089 3.1E-07 54.8 5.4 34 28-61 4-37 (283)
281 3hn2_A 2-dehydropantoate 2-red 95.7 0.0073 2.5E-07 56.3 4.4 34 28-61 2-35 (312)
282 1id1_A Putative potassium chan 95.7 0.014 4.8E-07 47.9 5.6 34 28-61 3-36 (153)
283 2hmt_A YUAA protein; RCK, KTN, 95.7 0.01 3.5E-07 47.9 4.7 34 28-61 6-39 (144)
284 3ado_A Lambda-crystallin; L-gu 95.7 0.01 3.5E-07 55.0 5.0 34 28-61 6-39 (319)
285 3gg2_A Sugar dehydrogenase, UD 95.6 0.01 3.5E-07 58.2 5.0 33 29-61 3-35 (450)
286 3eag_A UDP-N-acetylmuramate:L- 95.6 0.011 3.9E-07 55.3 5.1 35 27-61 3-38 (326)
287 2dpo_A L-gulonate 3-dehydrogen 95.5 0.012 4.1E-07 54.8 5.0 34 28-61 6-39 (319)
288 1zcj_A Peroxisomal bifunctiona 95.5 0.02 6.7E-07 56.5 6.5 34 28-61 37-70 (463)
289 3g17_A Similar to 2-dehydropan 95.5 0.0096 3.3E-07 54.9 4.1 34 28-61 2-35 (294)
290 3c85_A Putative glutathione-re 95.4 0.014 4.6E-07 49.6 4.7 34 28-61 39-73 (183)
291 3qha_A Putative oxidoreductase 95.4 0.011 3.7E-07 54.6 4.3 38 25-62 12-49 (296)
292 3vtf_A UDP-glucose 6-dehydroge 95.4 0.015 5E-07 56.4 5.2 37 25-61 18-54 (444)
293 3p2y_A Alanine dehydrogenase/p 95.4 0.015 5.1E-07 55.0 5.1 35 27-61 183-217 (381)
294 3g79_A NDP-N-acetyl-D-galactos 95.4 0.011 3.8E-07 58.1 4.4 36 27-62 17-54 (478)
295 2y0c_A BCEC, UDP-glucose dehyd 95.4 0.013 4.5E-07 57.9 5.0 34 28-61 8-41 (478)
296 2ewd_A Lactate dehydrogenase,; 95.3 0.015 5.2E-07 54.2 5.0 36 26-61 2-38 (317)
297 3l4b_C TRKA K+ channel protien 95.3 0.015 5.3E-07 50.9 4.6 33 29-61 1-33 (218)
298 2raf_A Putative dinucleotide-b 95.2 0.019 6.4E-07 49.9 5.0 36 27-62 18-53 (209)
299 2ew2_A 2-dehydropantoate 2-red 95.2 0.016 5.4E-07 54.0 4.8 34 28-61 3-36 (316)
300 3d1c_A Flavin-containing putat 95.2 0.017 5.9E-07 55.0 4.9 35 28-62 166-200 (369)
301 4dio_A NAD(P) transhydrogenase 95.1 0.021 7E-07 54.6 5.3 35 27-61 189-223 (405)
302 3doj_A AT3G25530, dehydrogenas 95.1 0.02 7E-07 53.2 5.2 36 26-61 19-54 (310)
303 1ks9_A KPA reductase;, 2-dehyd 95.1 0.02 6.9E-07 52.6 5.1 34 29-62 1-34 (291)
304 1t2d_A LDH-P, L-lactate dehydr 95.1 0.024 8.3E-07 52.8 5.5 35 27-61 3-38 (322)
305 3ghy_A Ketopantoate reductase 95.1 0.022 7.6E-07 53.6 5.2 33 28-60 3-35 (335)
306 2q0l_A TRXR, thioredoxin reduc 95.0 0.021 7.3E-07 52.9 5.1 35 28-62 143-177 (311)
307 1lld_A L-lactate dehydrogenase 95.0 0.021 7.2E-07 53.3 5.0 35 27-61 6-42 (319)
308 1zej_A HBD-9, 3-hydroxyacyl-CO 95.0 0.021 7.1E-07 52.4 4.8 34 27-61 11-44 (293)
309 4dll_A 2-hydroxy-3-oxopropiona 95.0 0.02 6.7E-07 53.5 4.7 36 26-61 29-64 (320)
310 3ego_A Probable 2-dehydropanto 95.0 0.021 7.2E-07 53.0 4.8 33 28-61 2-34 (307)
311 1bg6_A N-(1-D-carboxylethyl)-L 95.0 0.021 7.3E-07 54.2 5.0 34 28-61 4-37 (359)
312 3gwf_A Cyclohexanone monooxyge 94.9 0.021 7.1E-07 57.6 4.9 36 27-62 177-212 (540)
313 1kyq_A Met8P, siroheme biosynt 94.9 0.019 6.6E-07 51.8 4.1 35 27-61 12-46 (274)
314 2xve_A Flavin-containing monoo 94.8 0.026 8.9E-07 55.8 5.2 36 27-62 196-231 (464)
315 1fl2_A Alkyl hydroperoxide red 94.8 0.024 8.1E-07 52.6 4.7 35 28-62 144-178 (310)
316 2hjr_A Malate dehydrogenase; m 94.8 0.031 1.1E-06 52.3 5.4 35 27-61 13-48 (328)
317 2q3e_A UDP-glucose 6-dehydroge 94.8 0.019 6.6E-07 56.7 4.1 37 25-61 2-40 (467)
318 3lxd_A FAD-dependent pyridine 94.8 0.032 1.1E-06 54.3 5.6 37 28-64 152-188 (415)
319 3dfz_A SIRC, precorrin-2 dehyd 94.8 0.029 1E-06 48.9 4.8 35 27-61 30-64 (223)
320 3g0o_A 3-hydroxyisobutyrate de 94.7 0.028 9.6E-07 52.0 5.0 35 27-61 6-40 (303)
321 3pid_A UDP-glucose 6-dehydroge 94.7 0.025 8.6E-07 54.7 4.7 34 27-61 35-68 (432)
322 1z82_A Glycerol-3-phosphate de 94.7 0.028 9.6E-07 52.9 5.0 34 27-60 13-46 (335)
323 3k96_A Glycerol-3-phosphate de 94.7 0.029 1E-06 53.1 5.0 34 28-61 29-62 (356)
324 3uox_A Otemo; baeyer-villiger 94.7 0.024 8.3E-07 57.2 4.7 36 27-62 184-219 (545)
325 3dtt_A NADP oxidoreductase; st 94.7 0.034 1.2E-06 49.7 5.1 35 27-61 18-52 (245)
326 1vdc_A NTR, NADPH dependent th 94.6 0.028 9.5E-07 52.7 4.8 36 27-62 158-193 (333)
327 3fg2_P Putative rubredoxin red 94.6 0.03 1E-06 54.2 5.1 37 28-64 142-178 (404)
328 1pzg_A LDH, lactate dehydrogen 94.6 0.029 9.9E-07 52.6 4.8 34 28-61 9-43 (331)
329 4a7p_A UDP-glucose dehydrogena 94.6 0.032 1.1E-06 54.4 5.2 35 28-62 8-42 (446)
330 4ezb_A Uncharacterized conserv 94.6 0.029 1E-06 52.3 4.7 35 27-61 23-58 (317)
331 2a87_A TRXR, TR, thioredoxin r 94.6 0.03 1E-06 52.6 4.9 35 28-62 155-189 (335)
332 2q7v_A Thioredoxin reductase; 94.6 0.031 1.1E-06 52.2 4.9 35 28-62 152-186 (325)
333 3oc4_A Oxidoreductase, pyridin 94.6 0.037 1.3E-06 54.5 5.6 37 28-64 147-183 (452)
334 4ap3_A Steroid monooxygenase; 94.6 0.025 8.7E-07 57.1 4.5 36 27-62 190-225 (549)
335 3pef_A 6-phosphogluconate dehy 94.5 0.032 1.1E-06 51.1 4.8 33 29-61 2-34 (287)
336 4e21_A 6-phosphogluconate dehy 94.4 0.036 1.2E-06 52.5 5.0 35 27-61 21-55 (358)
337 3hwr_A 2-dehydropantoate 2-red 94.4 0.036 1.2E-06 51.7 4.9 34 26-60 17-50 (318)
338 2gv8_A Monooxygenase; FMO, FAD 94.4 0.035 1.2E-06 54.6 5.0 36 28-63 212-248 (447)
339 3mog_A Probable 3-hydroxybutyr 94.4 0.039 1.3E-06 54.5 5.3 34 28-61 5-38 (483)
340 1mv8_A GMD, GDP-mannose 6-dehy 94.4 0.028 9.7E-07 55.0 4.3 33 29-61 1-33 (436)
341 2h78_A Hibadh, 3-hydroxyisobut 94.4 0.032 1.1E-06 51.6 4.4 34 28-61 3-36 (302)
342 3pdu_A 3-hydroxyisobutyrate de 94.4 0.026 8.9E-07 51.8 3.8 33 29-61 2-34 (287)
343 3l6d_A Putative oxidoreductase 94.3 0.051 1.7E-06 50.3 5.7 35 27-61 8-42 (306)
344 4gbj_A 6-phosphogluconate dehy 94.3 0.028 9.6E-07 51.8 3.9 36 26-61 3-38 (297)
345 2vns_A Metalloreductase steap3 94.3 0.049 1.7E-06 47.5 5.2 34 28-61 28-61 (215)
346 4huj_A Uncharacterized protein 94.2 0.022 7.6E-07 49.9 2.8 33 28-60 23-56 (220)
347 1ur5_A Malate dehydrogenase; o 94.2 0.05 1.7E-06 50.4 5.2 34 28-61 2-36 (309)
348 3cty_A Thioredoxin reductase; 94.1 0.037 1.3E-06 51.5 4.3 35 28-62 155-189 (319)
349 2uyy_A N-PAC protein; long-cha 94.0 0.061 2.1E-06 50.0 5.6 34 28-61 30-63 (316)
350 3cky_A 2-hydroxymethyl glutara 94.0 0.041 1.4E-06 50.8 4.4 35 27-61 3-37 (301)
351 2v6b_A L-LDH, L-lactate dehydr 94.0 0.049 1.7E-06 50.4 4.8 33 29-61 1-35 (304)
352 3oj0_A Glutr, glutamyl-tRNA re 94.0 0.024 8E-07 46.0 2.4 34 28-61 21-54 (144)
353 2x8g_A Thioredoxin glutathione 94.0 0.052 1.8E-06 55.6 5.5 33 28-60 286-318 (598)
354 3ggo_A Prephenate dehydrogenas 94.0 0.06 2E-06 50.0 5.3 34 28-61 33-68 (314)
355 2vdc_G Glutamate synthase [NAD 93.9 0.062 2.1E-06 52.9 5.7 36 27-62 263-299 (456)
356 1vpd_A Tartronate semialdehyde 93.9 0.043 1.5E-06 50.6 4.3 34 28-61 5-38 (299)
357 1dlj_A UDP-glucose dehydrogena 93.9 0.039 1.3E-06 53.3 4.1 32 29-61 1-32 (402)
358 4ffl_A PYLC; amino acid, biosy 93.9 0.057 2E-06 51.4 5.2 35 28-62 1-35 (363)
359 1x13_A NAD(P) transhydrogenase 93.9 0.053 1.8E-06 52.2 4.9 34 28-61 172-205 (401)
360 2o3j_A UDP-glucose 6-dehydroge 93.8 0.039 1.3E-06 54.7 4.0 33 28-60 9-43 (481)
361 3qsg_A NAD-binding phosphogluc 93.8 0.043 1.5E-06 51.0 4.1 34 27-60 23-57 (312)
362 4gwg_A 6-phosphogluconate dehy 93.8 0.059 2E-06 53.0 5.2 35 27-61 3-37 (484)
363 1guz_A Malate dehydrogenase; o 93.7 0.064 2.2E-06 49.7 5.0 33 29-61 1-35 (310)
364 4g65_A TRK system potassium up 93.7 0.03 1E-06 55.1 2.8 35 27-61 2-36 (461)
365 1l7d_A Nicotinamide nucleotide 93.7 0.068 2.3E-06 51.2 5.3 35 27-61 171-205 (384)
366 1txg_A Glycerol-3-phosphate de 93.7 0.046 1.6E-06 51.4 4.1 31 29-59 1-31 (335)
367 3gt0_A Pyrroline-5-carboxylate 93.7 0.073 2.5E-06 47.5 5.2 34 28-61 2-39 (247)
368 2pv7_A T-protein [includes: ch 93.7 0.074 2.5E-06 49.0 5.4 35 27-61 20-55 (298)
369 3gvi_A Malate dehydrogenase; N 93.6 0.076 2.6E-06 49.4 5.4 34 28-61 7-41 (324)
370 3c24_A Putative oxidoreductase 93.6 0.075 2.6E-06 48.6 5.3 34 28-61 11-45 (286)
371 1hyu_A AHPF, alkyl hydroperoxi 93.6 0.047 1.6E-06 54.8 4.1 35 28-62 355-389 (521)
372 1evy_A Glycerol-3-phosphate de 93.6 0.043 1.5E-06 52.3 3.7 32 30-61 17-48 (366)
373 3ab1_A Ferredoxin--NADP reduct 93.5 0.053 1.8E-06 51.4 4.3 35 28-62 163-197 (360)
374 2p4q_A 6-phosphogluconate dehy 93.5 0.076 2.6E-06 52.7 5.4 35 27-61 9-43 (497)
375 1yj8_A Glycerol-3-phosphate de 93.5 0.048 1.6E-06 52.2 3.9 35 28-62 21-62 (375)
376 2qyt_A 2-dehydropantoate 2-red 93.4 0.041 1.4E-06 51.2 3.3 32 28-59 8-45 (317)
377 2a9f_A Putative malic enzyme ( 93.4 0.062 2.1E-06 50.7 4.4 35 26-60 186-221 (398)
378 3tl2_A Malate dehydrogenase; c 93.4 0.086 2.9E-06 48.8 5.3 33 28-60 8-41 (315)
379 1jay_A Coenzyme F420H2:NADP+ o 93.4 0.077 2.6E-06 46.0 4.8 32 29-60 1-33 (212)
380 3ius_A Uncharacterized conserv 93.4 0.063 2.2E-06 49.0 4.4 35 27-61 4-38 (286)
381 2rcy_A Pyrroline carboxylate r 93.4 0.071 2.4E-06 48.0 4.7 35 28-62 4-42 (262)
382 2wtb_A MFP2, fatty acid multif 93.3 0.083 2.8E-06 55.1 5.6 34 28-61 312-345 (725)
383 2izz_A Pyrroline-5-carboxylate 93.3 0.08 2.7E-06 49.4 4.9 35 27-61 21-59 (322)
384 3c7a_A Octopine dehydrogenase; 93.2 0.043 1.5E-06 53.1 3.2 31 28-58 2-33 (404)
385 3r9u_A Thioredoxin reductase; 93.2 0.082 2.8E-06 48.8 5.0 35 28-62 147-181 (315)
386 3iwa_A FAD-dependent pyridine 93.2 0.073 2.5E-06 52.7 4.9 37 28-64 159-196 (472)
387 3dfu_A Uncharacterized protein 93.2 0.027 9.3E-07 49.4 1.5 34 27-60 5-38 (232)
388 1pjc_A Protein (L-alanine dehy 93.2 0.092 3.1E-06 49.9 5.3 34 28-61 167-200 (361)
389 2qrj_A Saccharopine dehydrogen 93.2 0.079 2.7E-06 50.2 4.7 40 27-66 213-257 (394)
390 1vl6_A Malate oxidoreductase; 93.2 0.073 2.5E-06 50.2 4.4 34 27-60 191-225 (388)
391 3l9w_A Glutathione-regulated p 93.1 0.095 3.2E-06 50.7 5.4 34 28-61 4-37 (413)
392 1y6j_A L-lactate dehydrogenase 93.1 0.091 3.1E-06 48.8 5.0 34 28-61 7-42 (318)
393 3o0h_A Glutathione reductase; 93.0 0.092 3.1E-06 52.1 5.3 37 28-64 191-227 (484)
394 2zyd_A 6-phosphogluconate dehy 93.0 0.078 2.7E-06 52.4 4.7 35 27-61 14-48 (480)
395 3dhn_A NAD-dependent epimerase 93.0 0.072 2.5E-06 46.6 4.1 36 26-61 2-38 (227)
396 2eez_A Alanine dehydrogenase; 93.0 0.099 3.4E-06 49.8 5.3 34 28-61 166-199 (369)
397 1hyh_A L-hicdh, L-2-hydroxyiso 93.0 0.073 2.5E-06 49.4 4.2 33 29-61 2-36 (309)
398 2g5c_A Prephenate dehydrogenas 93.0 0.096 3.3E-06 47.7 5.0 33 29-61 2-36 (281)
399 2ahr_A Putative pyrroline carb 93.0 0.081 2.8E-06 47.6 4.4 34 28-61 3-36 (259)
400 2f1k_A Prephenate dehydrogenas 92.9 0.095 3.3E-06 47.7 4.8 33 29-61 1-33 (279)
401 2gf2_A Hibadh, 3-hydroxyisobut 92.8 0.09 3.1E-06 48.3 4.6 32 30-61 2-33 (296)
402 1yqg_A Pyrroline-5-carboxylate 92.8 0.079 2.7E-06 47.7 4.2 33 29-61 1-34 (263)
403 2cvz_A Dehydrogenase, 3-hydrox 92.8 0.08 2.7E-06 48.4 4.2 32 29-61 2-33 (289)
404 1nyt_A Shikimate 5-dehydrogena 92.8 0.11 3.8E-06 47.1 5.1 34 28-61 119-152 (271)
405 3ktd_A Prephenate dehydrogenas 92.8 0.12 4.1E-06 48.5 5.4 34 28-61 8-41 (341)
406 1a5z_A L-lactate dehydrogenase 92.8 0.078 2.7E-06 49.4 4.1 33 29-61 1-35 (319)
407 2pgd_A 6-phosphogluconate dehy 92.7 0.1 3.5E-06 51.7 5.0 33 29-61 3-35 (482)
408 2vhw_A Alanine dehydrogenase; 92.7 0.12 4E-06 49.4 5.3 35 27-61 167-201 (377)
409 3pqe_A L-LDH, L-lactate dehydr 92.7 0.1 3.4E-06 48.6 4.7 34 27-60 4-39 (326)
410 3phh_A Shikimate dehydrogenase 92.7 0.13 4.5E-06 46.2 5.3 35 28-62 118-152 (269)
411 3ldh_A Lactate dehydrogenase; 92.7 0.15 5E-06 47.4 5.7 35 27-61 20-56 (330)
412 1yb4_A Tartronic semialdehyde 92.5 0.07 2.4E-06 49.0 3.4 33 28-61 3-35 (295)
413 3gpi_A NAD-dependent epimerase 92.5 0.16 5.5E-06 46.3 5.8 34 28-61 3-36 (286)
414 3p7m_A Malate dehydrogenase; p 92.4 0.15 5.1E-06 47.4 5.4 34 28-61 5-39 (321)
415 1wdk_A Fatty oxidation complex 92.4 0.1 3.5E-06 54.4 4.7 35 27-61 313-347 (715)
416 1oju_A MDH, malate dehydrogena 92.4 0.1 3.4E-06 47.8 4.1 33 29-61 1-35 (294)
417 1pgj_A 6PGDH, 6-PGDH, 6-phosph 92.3 0.11 3.8E-06 51.3 4.8 33 29-61 2-34 (478)
418 1x0v_A GPD-C, GPDH-C, glycerol 92.3 0.064 2.2E-06 50.8 2.9 34 29-62 9-49 (354)
419 3tri_A Pyrroline-5-carboxylate 92.3 0.15 5.3E-06 46.3 5.4 34 28-61 3-39 (280)
420 3ojo_A CAP5O; rossmann fold, c 92.3 0.1 3.5E-06 50.5 4.3 34 28-61 11-44 (431)
421 2rir_A Dipicolinate synthase, 92.3 0.15 5E-06 47.1 5.2 35 27-61 156-190 (300)
422 1pjq_A CYSG, siroheme synthase 92.3 0.12 4E-06 50.8 4.8 33 28-60 12-44 (457)
423 1cjc_A Protein (adrenodoxin re 92.2 0.12 4.2E-06 50.8 4.9 35 28-62 145-200 (460)
424 3fbs_A Oxidoreductase; structu 92.2 0.095 3.2E-06 47.9 3.9 33 28-61 141-173 (297)
425 3d4o_A Dipicolinate synthase s 92.1 0.16 5.5E-06 46.6 5.2 35 27-61 154-188 (293)
426 2i6t_A Ubiquitin-conjugating e 92.0 0.12 4.1E-06 47.6 4.3 35 27-61 13-49 (303)
427 1p77_A Shikimate 5-dehydrogena 92.0 0.12 4.1E-06 46.9 4.2 35 27-61 118-152 (272)
428 1np3_A Ketol-acid reductoisome 92.0 0.17 5.8E-06 47.5 5.4 33 29-61 17-49 (338)
429 1jw9_B Molybdopterin biosynthe 92.0 0.12 4.1E-06 46.1 4.2 33 28-60 31-64 (249)
430 2egg_A AROE, shikimate 5-dehyd 92.0 0.15 5.1E-06 46.9 4.9 35 27-61 140-175 (297)
431 3nep_X Malate dehydrogenase; h 91.9 0.12 4.3E-06 47.7 4.3 33 29-61 1-35 (314)
432 4aj2_A L-lactate dehydrogenase 91.8 0.21 7.3E-06 46.4 5.7 36 25-60 16-53 (331)
433 3d1l_A Putative NADP oxidoredu 91.7 0.12 4.2E-06 46.5 4.0 34 28-61 10-44 (266)
434 1ez4_A Lactate dehydrogenase; 91.7 0.13 4.6E-06 47.7 4.2 36 25-60 2-39 (318)
435 1i36_A Conserved hypothetical 91.7 0.13 4.4E-06 46.4 4.0 30 30-59 2-31 (264)
436 3ew7_A LMO0794 protein; Q8Y8U8 91.7 0.19 6.6E-06 43.5 5.1 33 29-61 1-34 (221)
437 3e8x_A Putative NAD-dependent 91.6 0.18 6.3E-06 44.3 5.0 35 27-61 20-55 (236)
438 3r6d_A NAD-dependent epimerase 91.6 0.24 8.2E-06 43.1 5.6 34 28-61 5-40 (221)
439 1edz_A 5,10-methylenetetrahydr 91.5 0.15 5.2E-06 46.9 4.3 34 27-60 176-210 (320)
440 1ldn_A L-lactate dehydrogenase 91.4 0.18 6.1E-06 46.8 4.7 35 27-61 5-41 (316)
441 4b4o_A Epimerase family protei 91.4 0.23 7.8E-06 45.6 5.5 34 29-62 1-35 (298)
442 2aef_A Calcium-gated potassium 91.4 0.08 2.7E-06 46.8 2.3 34 27-61 8-41 (234)
443 4hv4_A UDP-N-acetylmuramate--L 91.4 0.13 4.3E-06 51.2 3.9 35 27-61 21-56 (494)
444 1o94_A Tmadh, trimethylamine d 91.4 0.15 5E-06 53.5 4.6 35 27-61 527-563 (729)
445 3h2s_A Putative NADH-flavin re 91.3 0.21 7.2E-06 43.5 5.0 33 29-61 1-34 (224)
446 3rui_A Ubiquitin-like modifier 91.2 0.084 2.9E-06 49.1 2.3 56 3-59 10-66 (340)
447 3vku_A L-LDH, L-lactate dehydr 91.2 0.18 6.2E-06 46.8 4.6 34 27-60 8-43 (326)
448 2iz1_A 6-phosphogluconate dehy 91.2 0.18 6.3E-06 49.7 4.9 34 28-61 5-38 (474)
449 2hk9_A Shikimate dehydrogenase 91.2 0.16 5.4E-06 46.1 4.1 34 28-61 129-162 (275)
450 1hdo_A Biliverdin IX beta redu 91.2 0.25 8.6E-06 42.2 5.3 33 29-61 4-37 (206)
451 4a9w_A Monooxygenase; baeyer-v 91.2 0.17 5.8E-06 47.6 4.5 34 27-61 162-195 (357)
452 3obb_A Probable 3-hydroxyisobu 91.1 0.18 6.2E-06 46.3 4.4 34 28-61 3-36 (300)
453 2gag_A Heterotetrameric sarcos 91.0 0.12 4E-06 56.0 3.5 37 28-64 284-320 (965)
454 2yjz_A Metalloreductase steap4 90.3 0.043 1.5E-06 47.3 0.0 35 27-61 18-52 (201)
455 2dbq_A Glyoxylate reductase; D 90.9 0.26 8.9E-06 46.1 5.4 35 27-61 149-183 (334)
456 1w4x_A Phenylacetone monooxyge 90.8 0.18 6E-06 50.9 4.4 35 27-61 185-219 (542)
457 3ond_A Adenosylhomocysteinase; 90.8 0.24 8.2E-06 48.4 5.1 35 27-61 264-298 (488)
458 3fi9_A Malate dehydrogenase; s 90.8 0.26 8.9E-06 46.1 5.2 33 28-60 8-43 (343)
459 3don_A Shikimate dehydrogenase 90.6 0.2 6.7E-06 45.4 4.0 35 27-61 116-151 (277)
460 3u62_A Shikimate dehydrogenase 90.5 0.31 1.1E-05 43.5 5.3 32 30-61 110-142 (253)
461 3b1f_A Putative prephenate deh 90.5 0.22 7.5E-06 45.5 4.4 34 28-61 6-41 (290)
462 3zwc_A Peroxisomal bifunctiona 90.4 0.27 9.2E-06 51.1 5.4 34 28-61 316-349 (742)
463 3d0o_A L-LDH 1, L-lactate dehy 90.2 0.24 8.1E-06 46.0 4.4 33 28-60 6-40 (317)
464 1gte_A Dihydropyrimidine dehyd 90.2 0.22 7.7E-06 54.2 4.9 33 29-61 333-366 (1025)
465 2b69_A UDP-glucuronate decarbo 90.2 0.32 1.1E-05 45.6 5.4 34 27-60 26-60 (343)
466 2gcg_A Glyoxylate reductase/hy 90.2 0.3 1E-05 45.6 5.1 35 27-61 154-188 (330)
467 2d5c_A AROE, shikimate 5-dehyd 90.2 0.32 1.1E-05 43.8 5.1 32 30-61 118-149 (263)
468 3vps_A TUNA, NAD-dependent epi 90.1 0.34 1.2E-05 44.8 5.4 36 27-62 6-42 (321)
469 3tnl_A Shikimate dehydrogenase 90.1 0.34 1.2E-05 44.7 5.2 34 27-60 153-187 (315)
470 1qyc_A Phenylcoumaran benzylic 90.1 0.31 1.1E-05 44.8 5.1 34 28-61 4-38 (308)
471 1lqt_A FPRA; NADP+ derivative, 90.0 0.26 8.9E-06 48.4 4.7 36 27-62 146-202 (456)
472 3h8v_A Ubiquitin-like modifier 90.0 0.23 7.8E-06 45.2 4.0 33 27-59 35-68 (292)
473 3pwz_A Shikimate dehydrogenase 90.0 0.34 1.1E-05 43.8 5.0 35 27-61 119-154 (272)
474 3gvp_A Adenosylhomocysteinase 89.9 0.26 9.1E-06 47.2 4.5 35 27-61 219-253 (435)
475 3ce6_A Adenosylhomocysteinase; 89.9 0.34 1.2E-05 47.7 5.4 35 27-61 273-307 (494)
476 3ba1_A HPPR, hydroxyphenylpyru 89.9 0.36 1.2E-05 45.0 5.3 36 27-62 163-198 (333)
477 1leh_A Leucine dehydrogenase; 89.9 0.33 1.1E-05 45.8 5.1 34 27-60 172-205 (364)
478 3orq_A N5-carboxyaminoimidazol 89.8 0.48 1.6E-05 45.1 6.3 36 26-61 10-45 (377)
479 1smk_A Malate dehydrogenase, g 89.8 0.21 7.2E-06 46.5 3.7 36 27-62 7-45 (326)
480 3o8q_A Shikimate 5-dehydrogena 89.8 0.35 1.2E-05 43.9 5.1 35 27-61 125-160 (281)
481 3fbt_A Chorismate mutase and s 89.8 0.31 1.1E-05 44.2 4.7 35 27-61 121-156 (282)
482 3jyo_A Quinate/shikimate dehyd 89.7 0.36 1.2E-05 43.9 5.1 35 27-61 126-161 (283)
483 1nvt_A Shikimate 5'-dehydrogen 89.7 0.26 8.9E-06 45.0 4.2 32 28-60 128-159 (287)
484 1mld_A Malate dehydrogenase; o 89.7 0.27 9.2E-06 45.5 4.3 33 29-61 1-36 (314)
485 3enk_A UDP-glucose 4-epimerase 89.7 0.4 1.4E-05 44.8 5.6 38 25-62 2-40 (341)
486 2f00_A UDP-N-acetylmuramate--L 89.6 0.25 8.6E-06 49.0 4.3 36 26-61 17-53 (491)
487 1rpn_A GDP-mannose 4,6-dehydra 89.5 0.38 1.3E-05 44.8 5.3 38 25-62 11-49 (335)
488 1y7t_A Malate dehydrogenase; N 89.4 0.24 8.3E-06 46.2 3.8 35 26-60 2-44 (327)
489 3ruf_A WBGU; rossmann fold, UD 89.4 0.56 1.9E-05 44.0 6.4 35 27-61 24-59 (351)
490 1qyd_A Pinoresinol-lariciresin 89.3 0.37 1.3E-05 44.4 5.0 34 28-61 4-38 (313)
491 2x4g_A Nucleoside-diphosphate- 89.3 0.44 1.5E-05 44.5 5.6 35 27-61 12-47 (342)
492 1gpj_A Glutamyl-tRNA reductase 89.2 0.34 1.2E-05 46.7 4.8 35 27-61 166-201 (404)
493 2wm3_A NMRA-like family domain 89.2 0.36 1.2E-05 44.2 4.8 37 25-61 2-40 (299)
494 3c1o_A Eugenol synthase; pheny 89.1 0.38 1.3E-05 44.5 5.0 35 27-61 3-38 (321)
495 2d0i_A Dehydrogenase; structur 89.1 0.38 1.3E-05 44.9 4.8 35 27-61 145-179 (333)
496 2ydy_A Methionine adenosyltran 89.1 0.35 1.2E-05 44.6 4.7 34 28-61 2-36 (315)
497 2r6j_A Eugenol synthase 1; phe 89.0 0.44 1.5E-05 44.1 5.2 35 27-61 10-45 (318)
498 2zqz_A L-LDH, L-lactate dehydr 88.9 0.35 1.2E-05 45.0 4.5 34 27-60 8-43 (326)
499 1p3d_A UDP-N-acetylmuramate--a 88.9 0.25 8.7E-06 48.8 3.7 36 26-61 16-52 (475)
500 1a4i_A Methylenetetrahydrofola 88.9 0.41 1.4E-05 43.4 4.7 33 27-59 164-197 (301)
No 1
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=100.00 E-value=2.8e-45 Score=374.47 Aligned_cols=417 Identities=23% Similarity=0.304 Sum_probs=299.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC-CceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~-g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
.+++||+|||||++||+||+.|+++|++|+|+|+++++||+++|.... ++.+|.|++++++. .+.+.++++++|++.
T Consensus 2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~ 79 (520)
T 1s3e_A 2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLET 79 (520)
T ss_dssp -CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT--CHHHHHHHHHTTCCE
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC--cHHHHHHHHHcCCcc
Confidence 356799999999999999999999999999999999999999998875 89999999999753 567889999999986
Q ss_pred eeccCCCcccccCCCcceeeecCCC-CccChHHHHHHHHHHHHHHHHHHHhhhcC-------------CCCCCHHHHHHH
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDG-NQVPQELVTKVGEAFESILKETDKVREEH-------------DEDMSIQRAISI 170 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 170 (491)
..........+..+.... .+.... ....+..... +.++...+.++.... .++.++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~g~~~-~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (520)
T 1s3e_A 80 YKVNEVERLIHHVKGKSY-PFRGPFPPVWNPITYLD----HNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDK 154 (520)
T ss_dssp EECCCSSEEEEEETTEEE-EECSSSCCCCSHHHHHH----HHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHH
T ss_pred eecccCCceEEEECCEEE-EecCCCCCCCCHHHHHH----HHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHh
Confidence 543322211111111111 111100 0011111111 122222222222111 134577777654
Q ss_pred HHccChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhccccccc------------ccCCccccccchHHHHHHHhc
Q 011202 171 VFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL------------LPGGHGLMVRGYLPVINTLAK 237 (491)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~------------~~~~~~~~~~G~~~l~~~l~~ 237 (491)
.+. .+.++.++.++ ...++.++..+++..+..... ..+...++.+|++.++++|++
T Consensus 155 ~~~-----------~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 223 (520)
T 1s3e_A 155 LCW-----------TESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMD 223 (520)
T ss_dssp HCS-----------SHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHH
T ss_pred hCC-----------CHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHH
Confidence 322 12223333333 356677777776654321100 112345788999999999987
Q ss_pred --cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEe
Q 011202 238 --GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 315 (491)
Q Consensus 238 --gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~ 315 (491)
|++|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..+..+ .+.|.+|+...+.+..+++++..|+++.|
T Consensus 224 ~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~ 301 (520)
T 1s3e_A 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKI--HFNPPLPMMRNQMITRVPLGSVIKCIVYY 301 (520)
T ss_dssp HHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGS--EEESCCCHHHHHHTTSCCBCCEEEEEEEC
T ss_pred HcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcce--eeCCCCCHHHHHHHHhCCCcceEEEEEEe
Confidence 88999999999999988889999999989999999999999987654 36788998888899999999999999999
Q ss_pred cCCCCCCCccceeec--CC-CCcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCC--CCCc
Q 011202 316 DKVFWPNVEFLGVVS--DT-SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPI 390 (491)
Q Consensus 316 ~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~ 390 (491)
++++|++..+.|... .+ ......+.....+.+..++++++.+..++.|..++++|+++.++++|++++|.. ..|.
T Consensus 302 ~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~ 381 (520)
T 1s3e_A 302 KEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPV 381 (520)
T ss_dssp SSCGGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCS
T ss_pred CCCcccCCCCCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCcc
Confidence 999998665555432 22 222233333322333478888887777788999999999999999999999853 4788
Q ss_pred EEEecccCCCCCCCcccc-cCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 391 QYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 391 ~~~~~~w~~~~~~~g~~~-~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
++..++|..++++.|++. +..+++.....+.+++|++||||||++++..++|+|+||+.||++||++|++.+
T Consensus 382 ~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l 454 (520)
T 1s3e_A 382 HYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454 (520)
T ss_dssp EEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 556666544456788999999999999987778899999999999999988765
No 2
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=100.00 E-value=1.7e-43 Score=355.61 Aligned_cols=417 Identities=21% Similarity=0.283 Sum_probs=292.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeec
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (491)
++||+|||||++||+||++|+++|++|+|+|+++++||+++|...+|+.+|.|+++++.. ...+.++++++|+.....
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~--~~~~~~~~~~~g~~~~~~ 82 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD--QTALISLLDELGLKTFER 82 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT--CHHHHHHHHHTTCCEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc--cHHHHHHHHHcCCccccc
Confidence 579999999999999999999999999999999999999999877899999999998643 456889999999986543
Q ss_pred cCCCc-ccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhc---------CCCCCCHHHHHHHHHccChh
Q 011202 108 SGDNS-VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE---------HDEDMSIQRAISIVFDRRPE 177 (491)
Q Consensus 108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 177 (491)
..... +.+..+..... +........+.....+...+..+......+... ...+.++.+|+.+.+.
T Consensus 83 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~---- 157 (453)
T 2yg5_A 83 YREGESVYISSAGERTR-YTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSD---- 157 (453)
T ss_dssp CCCSEEEEECTTSCEEE-ECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHHCS----
T ss_pred ccCCCEEEEeCCCceee-ccCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHhhcC----
Confidence 32222 11111011111 111111122222222222121111111111100 0124577777654322
Q ss_pred hhhhhhHHHHHHHHHHhhh-hhhcCCcc-ccchhcccccccc-----------cCCccccccchHHHHHHHhc--cCCee
Q 011202 178 LRLEGLAHKVLQWYLCRME-GWFAADAE-TISLKSWDKEELL-----------PGGHGLMVRGYLPVINTLAK--GLDIR 242 (491)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~s~~~~~~~~~~-----------~~~~~~~~~G~~~l~~~l~~--gv~i~ 242 (491)
.+.++.++.++. ..++.+++ .+++..+...... .....++.+|++.++++|++ |++|+
T Consensus 158 -------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~ 230 (453)
T 2yg5_A 158 -------DAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVF 230 (453)
T ss_dssp -------CHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHHGGGEE
T ss_pred -------CHHHHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhcCCcEE
Confidence 122333333333 45566666 6665443211000 11245788999999999987 67999
Q ss_pred cCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCC
Q 011202 243 LGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 321 (491)
Q Consensus 243 ~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 321 (491)
++++|++|..++++ +.|++ +|+++.||+||+|+|+..+.++ .+.|.+|+...+.+..+++++..|+++.|++++|+
T Consensus 231 ~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~ 307 (453)
T 2yg5_A 231 LNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRI--SYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWR 307 (453)
T ss_dssp CSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGS--EEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGG
T ss_pred cCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcC--EeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCC
Confidence 99999999998888 88776 6778999999999999987653 36788998888889999999999999999999998
Q ss_pred CCccceeecCCC-CcceeeecccccCC-ceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEecccC
Q 011202 322 NVEFLGVVSDTS-YGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWG 398 (491)
Q Consensus 322 ~~~~~g~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~-~~~~~~~~~~~w~ 398 (491)
+..+.+.+.... .....+.+. .+++ ..++++++.+..++.|..++++++++.++++|++++|. ..+|.++..++|.
T Consensus 308 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~ 386 (453)
T 2yg5_A 308 EDGLSGTGFGASEVVQEVYDNT-NHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWG 386 (453)
T ss_dssp GGTEEEEEECTTSSSCEEEECC-CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTT
T ss_pred CCCCCceeecCCCCeEEEEeCC-CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCCCccEEEEeecC
Confidence 655555543322 222333333 3333 46777777777777888899999999999999999975 3578889999999
Q ss_pred CCCCCCcccc-cCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 399 TDANSLGSYS-YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 399 ~~~~~~g~~~-~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
.++++.|++. ...++......+.+++|++||||||++++..++|+++||+.||++||++|++.+
T Consensus 387 ~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 451 (453)
T 2yg5_A 387 SEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARS 451 (453)
T ss_dssp TCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHHHh
Confidence 9999999875 345665434445788999999999999987678899999999999999998754
No 3
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=100.00 E-value=3.4e-42 Score=360.66 Aligned_cols=422 Identities=31% Similarity=0.534 Sum_probs=309.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC-CCCceeecccceeeCCCCCCcHHHHHHHcCCCee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (491)
..+||+|||||++||+||+.|++.|++|+|+|+.+++||+++|.. .+|+.+|.|++++++. ..+.+..+++++|++..
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~-~~np~~~l~~~lGl~~~ 413 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGC-INNPVALMCEQLGISMH 413 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECC-TTCHHHHHHHHHTCCCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCC-ccChHHHHHHHhCCccc
Confidence 468999999999999999999999999999999999999999854 4689999999999875 45678899999999754
Q ss_pred eccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCHHHHHHHHHccChh---hhh
Q 011202 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPE---LRL 180 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~ 180 (491)
...... .++...+..............+..+......+... ...+.++.+++...+..... +..
T Consensus 414 ~~~~~~-----------~l~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~sl~~~~~~~~~~~l~~~gv~~ 482 (776)
T 4gut_A 414 KFGERC-----------DLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQF 482 (776)
T ss_dssp ECCSCC-----------CEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHGGGCCGGGCCBHHHHHHHHHHHHHHHSCCCC
T ss_pred cccccc-----------ceEccCCcccchhHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcCCCc
Confidence 433221 12223333333333333444444444444443322 12344555554332211000 000
Q ss_pred hhhHHHHHHHHHHhhhhhhcCCccccchhccccc---ccccCCccccccchHHHHHHHhccCCeecCceeEEEEecCCcE
Q 011202 181 EGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE---ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 257 (491)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~~v 257 (491)
.......+......+....+..+..++...+... ....+....+.+|++.+++++++|++|+++++|++|+.++++|
T Consensus 483 ~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~~l~~aLa~gl~I~l~t~V~~I~~~~~~v 562 (776)
T 4gut_A 483 SELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEV 562 (776)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTHHHHHHHHTTSCEESSCCEEEEECSSSSE
T ss_pred cchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHHHHHHHHHhCCcEEcCCeeEEEEEcCCEE
Confidence 0111222222222233345556666665544321 1233455678899999999999999999999999999998899
Q ss_pred EEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC----ccceeecCCC
Q 011202 258 KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV----EFLGVVSDTS 333 (491)
Q Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~g~~~~~~ 333 (491)
.|++.+|+++.||+||+|+|+..++...+.|.|.||+...+.+..+.++...|+++.|+++||++. .+.|.+....
T Consensus 563 ~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~ 642 (776)
T 4gut_A 563 QVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 642 (776)
T ss_dssp EEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSG
T ss_pred EEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCc
Confidence 999999989999999999999998766677999999999999999999999999999999999753 3444443221
Q ss_pred ---CcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEecccCCCCCCCcccc
Q 011202 334 ---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYS 408 (491)
Q Consensus 334 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~ 408 (491)
.....+.+..+..+..+|+.++.+..+..+..++++|+++.++++|+++|+. .+.|..+.+++|..++++.|+|+
T Consensus 643 ~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys 722 (776)
T 4gut_A 643 SKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYS 722 (776)
T ss_dssp GGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEE
T ss_pred CCCceEEEEecCCCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCC
Confidence 1123333333333456888888888888899999999999999999999975 45788999999999999999999
Q ss_pred cCCCCCChhhHHHhcCCc-CcEEEeccccCCCCCccchHHHHHHHHHHHHHHH
Q 011202 409 YDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~ 460 (491)
+..+|.....++.+..|+ ++|||||++++..++|+|+||+.||.+||++|+.
T Consensus 723 ~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 723 FVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp EEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 877777666677788886 8999999999988899999999999999998864
No 4
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=100.00 E-value=8.1e-42 Score=356.23 Aligned_cols=422 Identities=34% Similarity=0.561 Sum_probs=294.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (491)
...+||+|||||++||+||+.|++.|++|+|+|+++++||++.+.+..++.+|.|++++++. ..+.+..+.+++++...
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~l~~~l~~~~~ 183 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMELA 183 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHHTCCEE
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccCchhhcCcEEEeCC-CCchHHHHHHHhCcchh
Confidence 45689999999999999999999999999999999999999999888899999999998764 35667889999998765
Q ss_pred eccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcC------CCCCCHHHHHHH---------
Q 011202 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEH------DEDMSIQRAISI--------- 170 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------- 170 (491)
....... ++...+...+..........+..+...+..+.... ..+.++.+.+..
T Consensus 184 ~~~~~~~-----------~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 252 (662)
T 2z3y_A 184 KIKQKCP-----------LYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHV 252 (662)
T ss_dssp ECCSCCC-----------EECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEETTEECBHHHHHHHHHHHHHHHH
T ss_pred cccccce-----------EEeCCCcCCCcchhhhhhHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHHHhhhhhh
Confidence 4322111 12222222222221111111221111111111000 001111111100
Q ss_pred ----------------------------------------------------------------------HHccChh---
Q 011202 171 ----------------------------------------------------------------------VFDRRPE--- 177 (491)
Q Consensus 171 ----------------------------------------------------------------------~~~~~~~--- 177 (491)
+......
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~s~~~~~~~l~~~~~~~~~l~~~~~~ 332 (662)
T 2z3y_A 253 KDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGK 332 (662)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCTHHHHHHHHHHHHTTTHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcchhhhHHHHhhhhhhhhhcccccccchhhhhhhhhhhHHHHHhhhhhhhhhhhh
Confidence 0000000
Q ss_pred h---------------hhhhhHHHHHHHHHHhhhhhhcCCccccchhccccc--ccccCCccccccchHHHHHHHhccCC
Q 011202 178 L---------------RLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD 240 (491)
Q Consensus 178 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~gv~ 240 (491)
+ ........++++.+..+....+.....+++..+... ....+.+..+.+|++.|+++|+++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~l~~~La~~l~ 412 (662)
T 2z3y_A 333 LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD 412 (662)
T ss_dssp HHHHHHHHTTSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTTGGGCCBSCCEEETTCTTHHHHHHTTTCE
T ss_pred HHHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhcCCChhhcCHhhcCCCcccccCCceeeecCcHHHHHHHHHhcCc
Confidence 0 000001112222222222222444555555544322 12345567889999999999999999
Q ss_pred eecCceeEEEEecCCcEEEEEcC------CcEEEcCEEEEecchhhhccC--cccccCCCchHHHHHHhhcCCCcccEEE
Q 011202 241 IRLGHRVTKITRHYIGVKVTVEG------GKTFVADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKII 312 (491)
Q Consensus 241 i~~~~~V~~I~~~~~~v~v~~~~------g~~~~ad~VI~a~p~~~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 312 (491)
|+++++|++|+.++++|.|++.+ |+++.||+||+|+|+..++++ .+.|.|+||+...+++..+++++..||+
T Consensus 413 I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~ 492 (662)
T 2z3y_A 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVV 492 (662)
T ss_dssp EETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEE
T ss_pred eecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccceeEEE
Confidence 99999999999999989888765 568999999999999999763 2568999999988999999999999999
Q ss_pred EEecCCCCCCC-ccceeecCCCC---cceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC--C
Q 011202 313 MHFDKVFWPNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--A 386 (491)
Q Consensus 313 ~~~~~~~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~--~ 386 (491)
+.|+++||++. ...|.+.+... ...++++.. +..++++++.+..+..+..++++++++.++++|+++|+. .
T Consensus 493 l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~---~~~vL~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~ 569 (662)
T 2z3y_A 493 LCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV 569 (662)
T ss_dssp EECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCS---SSSEEEEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSS
T ss_pred EEcCcccccCCCCceeeecCCCCCCCceeEEEeCC---CCCEEEEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCccc
Confidence 99999999853 44555433211 122333321 456888888888888889999999999999999999975 3
Q ss_pred CCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCc-------------CcEEEeccccCCCCCccchHHHHHHHH
Q 011202 387 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-------------DNLFFAGEATSMSYPGSVHGAFSTGLM 453 (491)
Q Consensus 387 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-------------~~l~~aG~~~~~~~~g~~egA~~sg~~ 453 (491)
++|..+.+++|..++++.|+|++..+|.....++.+..|+ ++|||||++++..++|+|+||+.||++
T Consensus 570 ~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~r 649 (662)
T 2z3y_A 570 PQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLR 649 (662)
T ss_dssp CCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHH
T ss_pred CCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHH
Confidence 4788999999999999999999888888665556665554 699999999998788999999999999
Q ss_pred HHHHHHHHH
Q 011202 454 AAEDCRMRV 462 (491)
Q Consensus 454 aA~~i~~~l 462 (491)
||++|++.+
T Consensus 650 aA~~i~~~~ 658 (662)
T 2z3y_A 650 EAGRIADQF 658 (662)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988764
No 5
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=100.00 E-value=1.3e-42 Score=354.05 Aligned_cols=425 Identities=28% Similarity=0.410 Sum_probs=280.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCcceeeecCC-CCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
+.+||+|||||++||+||+.|+++| ++|+|||+++++|||++|... +|+.+|.|++|+++. ..+.+..++.++++..
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~-~~~~~~~~~~~lg~~~ 85 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT-LTNPLFLEEAQLSLND 85 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCT-TTCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecC-CCChHHHHHHHhCCCC
Confidence 3579999999999999999999999 999999999999999999776 789999999999754 2456777777777621
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccC---hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccCh-hhhh
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVP---QELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP-ELRL 180 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 180 (491)
.. ....+... ....+...+.... ......+.+.+.++...... .....++.++.+++..++.... .+.
T Consensus 86 ~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~s~~~~l~~~l~~~~~~l~- 157 (516)
T 1rsg_A 86 GR----TRFVFDDD--NFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFH-QHLGVSDCSFFQLVMKYLLQRRQFLT- 157 (516)
T ss_dssp CC----CCEECCCC--CCEEEETTTEECTTCTTTCHHHHHHHHHHHHHHHC--------CCBHHHHHHHHHHHHGGGSC-
T ss_pred cc----eeEEECCC--CEEEEcCCCccccccHHHHHHHHHHHHHHHHHHHhh-hccCCCCCCHHHHHHHHHHHhhcccC-
Confidence 00 00111110 0111111111111 11111222222222211110 1112356789888876544310 000
Q ss_pred hhhHHHHHHHHHHhhhhhhcCCccccchhcccccccccCCccccccchHHHHHHHhccC---CeecCceeEEEEec-CCc
Q 011202 181 EGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRH-YIG 256 (491)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~gv---~i~~~~~V~~I~~~-~~~ 256 (491)
.....++..++..+..+++..+..+++..+... ..+...++.+ ++.++++|++.+ +|+++++|++|..+ +++
T Consensus 158 -~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~--~~~~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~ 233 (516)
T 1rsg_A 158 -NDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFG--HQGRNAFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN 233 (516)
T ss_dssp -HHHHHHHHHHHGGGHHHHTBCTTTSBHHHHCCC--CSSCCEEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSC
T ss_pred -HHHHHHHHHHHHHHHHHhCCChHHCChHHHHhh--ccCcchhhhC-HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCe
Confidence 001112222222233455666666665443221 1223334556 999999998754 69999999999986 567
Q ss_pred EEEEEcCCcEEEcCEEEEecchhhhccC---------cccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCc-cc
Q 011202 257 VKVTVEGGKTFVADAVVVAVPLGVLKAR---------TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE-FL 326 (491)
Q Consensus 257 v~v~~~~g~~~~ad~VI~a~p~~~l~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~ 326 (491)
+.|++.+|+++.||+||+|+|+..++.. ...|.|.||+...+++..+.+++..|+++.|+++||++.. ..
T Consensus 234 v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~ 313 (516)
T 1rsg_A 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKI 313 (516)
T ss_dssp EEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCSEE
T ss_pred EEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCCcE
Confidence 8999999988999999999999988642 3578899999999999999999999999999999998642 11
Q ss_pred eeecCCC---------------------------------C-cceeeecccccCCceEEEEEeccchhHHhhcC--CHHH
Q 011202 327 GVVSDTS---------------------------------Y-GCSYFLNLHKATGHCVLVYMPAGQLARDIEKM--SDEA 370 (491)
Q Consensus 327 g~~~~~~---------------------------------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~e 370 (491)
....... + ...++.+.....+.++|+.++.+..+..+..+ ++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~l~~~~~~ 393 (516)
T 1rsg_A 314 VTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKER 393 (516)
T ss_dssp EECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEEHHHHTSCSEEEEEECBTHHHHHHHTTTCHHH
T ss_pred EEeCCCCccchhhcccCcccchhhhcccccccccccccccccCceeEEEeeecCCCcEEEEEecchHHHHHHhcCCCHHH
Confidence 1111100 0 00112222334566788899988888888888 8898
Q ss_pred HHHH---HHHHHHHhCC------CCCC---------Cc--EEEecccCCCCCCCcccccCCCCCCh-hhHHHhc-CCcCc
Q 011202 371 AANF---AFTQLKKILP------DASS---------PI--QYLVSHWGTDANSLGSYSYDTVGKSH-DLYERLR-IPVDN 428 (491)
Q Consensus 371 ~~~~---~~~~L~~~~p------~~~~---------~~--~~~~~~w~~~~~~~g~~~~~~~~~~~-~~~~~~~-~p~~~ 428 (491)
+++. ++++|.++|+ +... |. .+.+++|..++++.|+|++..+|+.. .....+. .|.++
T Consensus 394 ~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~~~r 473 (516)
T 1rsg_A 394 LFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSR 473 (516)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCCCCHHHHHHHhccCCCCc
Confidence 8765 5566665553 3321 44 78899999999999999987777743 3445554 47789
Q ss_pred EEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 429 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 429 l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
|||||++++..++|||+||+.||.+||++|++.+..
T Consensus 474 l~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~ 509 (516)
T 1rsg_A 474 IRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKL 509 (516)
T ss_dssp EEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHG
T ss_pred EEEeccccccCCCccchhHHHHHHHHHHHHHHHhhh
Confidence 999999999878899999999999999999987654
No 6
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=100.00 E-value=1.5e-42 Score=352.60 Aligned_cols=409 Identities=21% Similarity=0.280 Sum_probs=285.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCC--Ceee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL--PLYR 106 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~--~~~~ 106 (491)
+||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|++++++. ...+.++++++|+ +...
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~--~~~~~~~l~~lgl~~~~~~ 117 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWH--QSHVWREITRYKMHNALSP 117 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTT--SHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCc--cHHHHHHHHHcCCcceeec
Confidence 79999999999999999999999999999999999999999888999999999999743 4678899999998 4333
Q ss_pred ccCCCcccccCCCcceeeec--CCCCccChH-HHHHHHHHHHHHHH----HHHHhhh-----------cCCCCCCHHHHH
Q 011202 107 TSGDNSVLYDHDLESYALFD--MDGNQVPQE-LVTKVGEAFESILK----ETDKVRE-----------EHDEDMSIQRAI 168 (491)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~ 168 (491)
.... ......+.+.. .....++.. ........+..+.. ....+.. ...++.++.+++
T Consensus 118 ~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 192 (495)
T 2vvm_A 118 SFNF-----SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERI 192 (495)
T ss_dssp SCCC-----SSSCCEEEEESSTTCCEEECHHHHHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHHHHH
T ss_pred cccc-----CCCceEEEecCCCCceeecCHHHHHHHHHHHHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHHHHH
Confidence 2100 00000111111 011122321 11112222222221 0000000 001244666665
Q ss_pred HHHHccChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccccc----------cccCCccccccchHHHHHHHhc
Q 011202 169 SIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE----------LLPGGHGLMVRGYLPVINTLAK 237 (491)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~----------~~~~~~~~~~~G~~~l~~~l~~ 237 (491)
...... +.+.. +.++.++ ...++.+++.+++..+.... ....+.+.+.+|++.++++|.+
T Consensus 193 ~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 263 (495)
T 2vvm_A 193 DQIRDE--------LSLNE-RSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWE 263 (495)
T ss_dssp HHHGGG--------CCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHH
T ss_pred HHhhcc--------CCHHH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHH
Confidence 433110 22222 2233332 34556677776654432110 0112345678999999888864
Q ss_pred -----c-CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEE
Q 011202 238 -----G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKI 311 (491)
Q Consensus 238 -----g-v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 311 (491)
| ++|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..+..+ .+.|.+|+...+.+..+.+.+..|+
T Consensus 264 ~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv 341 (495)
T 2vvm_A 264 EAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKV 341 (495)
T ss_dssp HHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEE
T ss_pred HhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEE
Confidence 4 6799999999999988889999999988999999999999998754 4678899888889999999999999
Q ss_pred EEEecCCCCCCCccceeecCCCCcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcE
Q 011202 312 IMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ 391 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~ 391 (491)
++.|++++|. .+.|...++......+.+...+.+..+++++... .. .+++++.++.++++|++++|...+|.+
T Consensus 342 ~l~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~-~~----~~~~~e~~~~~~~~L~~~~~~~~~~~~ 414 (495)
T 2vvm_A 342 HAEVDNKDMR--SWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNS-AN----HIQPDEDVRETLKAVGQLAPGTFGVKR 414 (495)
T ss_dssp EEEESCGGGG--GEEEEECSSCSSCEEEEEEECTTSCEEEEEEECS-TT----CCCTTTCHHHHHHHHHTTSTTSCCEEE
T ss_pred EEEECCccCC--CceeEecCCCCcEEEecCCCCCCCCeEEEEEeCc-cc----cCCCHHHHHHHHHHHHHhcCCCCCceE
Confidence 9999999985 4555554433333344443345566777766532 11 145566778899999999997667888
Q ss_pred EEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 392 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 392 ~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
+.+++|..++++.|+|.+..+|+.....+.+++|.+||||||++++..++|+||||+.||++||++|++.+
T Consensus 415 ~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l 485 (495)
T 2vvm_A 415 LVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEEL 485 (495)
T ss_dssp EEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHh
Confidence 89999999999999998777887655678889999999999999987678999999999999999988765
No 7
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=100.00 E-value=1.6e-41 Score=357.39 Aligned_cols=423 Identities=35% Similarity=0.574 Sum_probs=295.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (491)
...+||+|||||++||+||+.|+++|++|+|||+++++||++.+.+..++.+|.|++++++. ..+.+..+.+++++...
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~l~~~lg~~~~ 354 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMELA 354 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHTTCCEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecccccchhcCceEecCC-CCchHHHHHHHhCCchh
Confidence 35689999999999999999999999999999999999999999888899999999998764 35667888999998754
Q ss_pred eccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcC------CCCCCHHHHHHHHHcc-----
Q 011202 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEH------DEDMSIQRAISIVFDR----- 174 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----- 174 (491)
...... .++...+...+..........+..+...+..+.... ..+.++.+.+......
T Consensus 355 ~~~~~~-----------~~~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~slg~~~e~v~~~~er~~ 423 (852)
T 2xag_A 355 KIKQKC-----------PLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHV 423 (852)
T ss_dssp ECCCCC-----------CEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCEETTEECBHHHHHHHHHHHHHHHH
T ss_pred hccccc-----------eEEecCCccccchhhhhhhhhhhhhHHHHHHHhhhhhhhcccCCCccHHHHHHHhhhhhhhhc
Confidence 432211 122223333333322222222222222221111100 0111222111100000
Q ss_pred ----------------------------Ch---hhhh-------------------------------------------
Q 011202 175 ----------------------------RP---ELRL------------------------------------------- 180 (491)
Q Consensus 175 ----------------------------~~---~~~~------------------------------------------- 180 (491)
.+ .+..
T Consensus 424 ~~e~l~~~~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~~~e~s~rs~~~~l~~~~~~~~~l~~~~~~ 503 (852)
T 2xag_A 424 KDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGK 503 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 00 0000
Q ss_pred ------------------hhhHHHHHHHHHHhhhhhhcCCccccchhccccc--ccccCCccccccchHHHHHHHhccCC
Q 011202 181 ------------------EGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD 240 (491)
Q Consensus 181 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~gv~ 240 (491)
......++++.+..+....+...+.+++..+... ....+.+..+.+|++.|+++|+++++
T Consensus 504 l~~~l~~l~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~ 583 (852)
T 2xag_A 504 LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD 583 (852)
T ss_dssp HHHTTHHHHHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTGGGGGCCBSCCEEETTCTTHHHHHHTTTCC
T ss_pred HHHHHHhhhccCcccccCCHHHHHHHHHHHhhhcccccCChHhhhhhhhhhccccccCCceEEecCcHHHHHHHHHhCCC
Confidence 0000011111111111122333344444433321 12345567889999999999999999
Q ss_pred eecCceeEEEEecCCcEEEEEcC------CcEEEcCEEEEecchhhhccC--cccccCCCchHHHHHHhhcCCCcccEEE
Q 011202 241 IRLGHRVTKITRHYIGVKVTVEG------GKTFVADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKII 312 (491)
Q Consensus 241 i~~~~~V~~I~~~~~~v~v~~~~------g~~~~ad~VI~a~p~~~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 312 (491)
|+++++|++|..++++|.|++.+ |+++.||+||+|+|+..++.+ .+.|.|.||....+++..++++...||+
T Consensus 584 I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~ 663 (852)
T 2xag_A 584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVV 663 (852)
T ss_dssp EECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEE
T ss_pred EEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccceEEEE
Confidence 99999999999999998888765 568999999999999999763 3568999999988899999999999999
Q ss_pred EEecCCCCCC-CccceeecCCC---CcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC--C
Q 011202 313 MHFDKVFWPN-VEFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--A 386 (491)
Q Consensus 313 ~~~~~~~~~~-~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~--~ 386 (491)
+.|+++||++ ....|.+.+.. ....++++.. +..+|++++.+..+..+..++++++++.++++|+++|+. .
T Consensus 664 L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~---~~pvLl~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~ 740 (852)
T 2xag_A 664 LCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV 740 (852)
T ss_dssp EECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS---SSSEEEEEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTC
T ss_pred EEcCCcccCCCCCeeeeeccccCCCCceEEEecCC---CCCEEEEEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCcccc
Confidence 9999999985 34556543321 1122333322 345888888888888888999999999999999999976 3
Q ss_pred CCCcEEEecccCCCCCCCcccccCCCCCChhhHHHhcCCc-------------CcEEEeccccCCCCCccchHHHHHHHH
Q 011202 387 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-------------DNLFFAGEATSMSYPGSVHGAFSTGLM 453 (491)
Q Consensus 387 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-------------~~l~~aG~~~~~~~~g~~egA~~sg~~ 453 (491)
++|..+.+++|..++++.|+|++..+|+....++.+..|+ ++|||||++++..++|+|+||+.||.+
T Consensus 741 ~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~R 820 (852)
T 2xag_A 741 PQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLR 820 (852)
T ss_dssp CCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHH
Confidence 4788999999999999999999888888655556666554 689999999998788999999999999
Q ss_pred HHHHHHHHHH
Q 011202 454 AAEDCRMRVL 463 (491)
Q Consensus 454 aA~~i~~~l~ 463 (491)
||+.|++.+.
T Consensus 821 AA~~Il~~l~ 830 (852)
T 2xag_A 821 EAGRIADQFL 830 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 8
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=100.00 E-value=1.7e-40 Score=334.97 Aligned_cols=424 Identities=30% Similarity=0.456 Sum_probs=288.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCcceeeecCCCCceeecccceeeCC--CCCCcHHHHHHH-cCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV--CQENPLAPVISR-LGL 102 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~-lg~ 102 (491)
..+||+|||||++||++|+.|++.|+ +|+|+|+++++||++++....++.+|.|++|+++. ...+.+.+++++ +|+
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl 82 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL 82 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence 56899999999999999999999998 89999999999999999888899999999999843 134668999999 899
Q ss_pred CeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHH---HHHHHHHHHHhh-hcCCCCCCHHH--HHHHHHccCh
Q 011202 103 PLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEA---FESILKETDKVR-EEHDEDMSIQR--AISIVFDRRP 176 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 176 (491)
.......... ....+...+...+.......... +..+........ ....++.++.. ++........
T Consensus 83 ~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~ 154 (472)
T 1b37_A 83 RNFRSDFDYL--------AQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGP 154 (472)
T ss_dssp CEEECCCTTG--------GGCEECSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTCTTCCBHHHHHHHHHTSSSSC
T ss_pred ceeeccCccc--------cceeEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHhhhccccc
Confidence 7654222111 01112222333333222111111 112222111111 11223455543 2211110000
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhcCCccccchhcccccc---cccCCcc--ccccchHHHHHHHhc-------------c
Q 011202 177 ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE---LLPGGHG--LMVRGYLPVINTLAK-------------G 238 (491)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~--~~~~G~~~l~~~l~~-------------g 238 (491)
......+++.+.. ...++.+++..++..+.... ...++.. ...+|++.++++|++ |
T Consensus 155 ----~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~ 228 (472)
T 1b37_A 155 ----ATPVDMVVDYYKF--DYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVD 228 (472)
T ss_dssp ----CSHHHHHHHHHHT--HHHHSSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCC
T ss_pred ----ccHHHHHHHHHHH--hhhhcccccccchhhccccccccccCCceeeeecCCcHHHHHHHHHHhccccccccccccc
Confidence 0001122222211 11223444444433221100 0011112 236899999998864 3
Q ss_pred CCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCC
Q 011202 239 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV 318 (491)
Q Consensus 239 v~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (491)
++|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..+..++..+.|.||+...+.+..+.++...|+++.|+++
T Consensus 229 ~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~ 308 (472)
T 1b37_A 229 PRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRK 308 (472)
T ss_dssp TTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSC
T ss_pred cEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCc
Confidence 58999999999999988899999999899999999999999998776778899999888999999999999999999999
Q ss_pred CCCCCccceeec--CCC-Ccceeeeccc-ccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCC--CCCcEE
Q 011202 319 FWPNVEFLGVVS--DTS-YGCSYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQY 392 (491)
Q Consensus 319 ~~~~~~~~g~~~--~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~~~ 392 (491)
||++....++.. +.. .....+.... ..++.++++.++.+..++.|..++++++++.++++|++++|+. .++..+
T Consensus 309 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~ 388 (472)
T 1b37_A 309 FWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDI 388 (472)
T ss_dssp CSCCSTTCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTTSCCCCCSEE
T ss_pred CCCCCCCcceEEecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCCCCceE
Confidence 998632112221 111 1111222111 1235566666665555667888899999999999999999874 567888
Q ss_pred EecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 393 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 393 ~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
.+.+|..++++.|+|....+|+.....+.+++|++||||||++++..++|+|+||+.||++||++|++.+..
T Consensus 389 ~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~ 460 (472)
T 1b37_A 389 LVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK 460 (472)
T ss_dssp ECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998876778776667889999999999999999877889999999999999999987643
No 9
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=100.00 E-value=1.6e-39 Score=324.51 Aligned_cols=401 Identities=23% Similarity=0.293 Sum_probs=277.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC---CceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF---GFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
++||+|||||++||+||+.|+++|++|+|+|+++++||++.+.... +..++.|+++++.. ....+.++++++|++.
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~ 79 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK-HHPRLAAELDRYGIPT 79 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTT-TCHHHHHHHHHHTCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCC-CcHHHHHHHHHhCCee
Confidence 3799999999999999999999999999999999999999987766 89999999998743 1456788899999986
Q ss_pred eeccCCCcccc-cCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcC--------CCCCCHHHHHHHHHccC
Q 011202 105 YRTSGDNSVLY-DHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEH--------DEDMSIQRAISIVFDRR 175 (491)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 175 (491)
..........+ .... . +. . ....+......+...+..+.....++.... ..+.++.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~-~--~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~~~-- 152 (431)
T 3k7m_X 80 AAASEFTSFRHRLGPT-A--VD-Q-AFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDL-- 152 (431)
T ss_dssp EECCCCCEECCBSCTT-C--CS-S-SSCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTTSSSCGGGCSBHHHHHHHHTC--
T ss_pred eecCCCCcEEEEecCC-e--ec-C-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCccCcchhhhcCCHHHHHHhcCC--
Confidence 55433222221 0000 0 00 0 001233444444444555544433221110 012566676643321
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhcCCccccchhccccccc---------ccCCccccccchHHHHHHHhc--cCCeecC
Q 011202 176 PELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL---------LPGGHGLMVRGYLPVINTLAK--GLDIRLG 244 (491)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---------~~~~~~~~~~G~~~l~~~l~~--gv~i~~~ 244 (491)
.......+.......++.++..++...+..... .......+.+|+..+++.+.+ | +|+++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~g-~i~~~ 223 (431)
T 3k7m_X 153 --------PPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP-EIRLQ 223 (431)
T ss_dssp --------CHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCEEETTCTHHHHHHHHTTCS-CEESS
T ss_pred --------CHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhhhcCCcHHHHHHHHHhhCC-ceEeC
Confidence 111111111112344555555555433221100 111111568999999999876 5 99999
Q ss_pred ceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCc
Q 011202 245 HRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE 324 (491)
Q Consensus 245 ~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 324 (491)
++|++|+.+++++.|++.+|+++.||+||+|+|+..+.. +.+.|.+|....+.+..+.++...|+.+.|+.+++.
T Consensus 224 ~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~~--- 298 (431)
T 3k7m_X 224 TVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEAG--- 298 (431)
T ss_dssp CCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCTT---
T ss_pred CEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhh--eeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCCcC---
Confidence 999999998888999999998899999999999998864 357899999888888888888889999999998742
Q ss_pred cceeecCCCCcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCC
Q 011202 325 FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 404 (491)
Q Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~ 404 (491)
+.+ ..+.....++.......+..+++.+..+.. +...+.+ .+.+.|++++|+.. +.++..++|..++++.
T Consensus 299 i~~--~~d~~~~~~~~~~~~~~~~~~l~~~~~g~~---~~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~W~~d~~~~ 368 (431)
T 3k7m_X 299 IEC--VGDGIFPTLYDYCEVSESERLLVAFTDSGS---FDPTDIG----AVKDAVLYYLPEVE-VLGIDYHDWIADPLFE 368 (431)
T ss_dssp EEE--EBSSSSSEEEEEEECSSSEEEEEEEEETTT---CCTTCHH----HHHHHHHHHCTTCE-EEEEECCCTTTCTTTS
T ss_pred ceE--cCCCCEEEEEeCcCCCCCCeEEEEEecccc---CCCCCHH----HHHHHHHHhcCCCC-ccEeEecccCCCCCCC
Confidence 222 222222233333222245567777765544 3333333 45678888999765 7888899999999999
Q ss_pred cccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHH
Q 011202 405 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 405 g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~ 460 (491)
|+|++..+|+.....+.+++|.+||||||+.++..++|||+||+.||.+||++|+.
T Consensus 369 G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~ 424 (431)
T 3k7m_X 369 GPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILH 424 (431)
T ss_dssp SSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHh
Confidence 99998889887777889999999999999999988899999999999999999875
No 10
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=100.00 E-value=2.7e-39 Score=328.86 Aligned_cols=422 Identities=21% Similarity=0.275 Sum_probs=280.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC--CCCceeecccceeeCCCCCCcHHHHHHHcCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVISRLGL 102 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (491)
+...+||+|||||++||+||+.|++.|++|+|+|+++++||++.|.. ..++.+|.|+++++. ....+.++++++|+
T Consensus 30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~g~ 107 (498)
T 2iid_A 30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE--KHRIVREYIRKFDL 107 (498)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET--TCHHHHHHHHHTTC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccc--hHHHHHHHHHHhCC
Confidence 34578999999999999999999999999999999999999998866 568899999999974 34568899999998
Q ss_pred Ceeecc--CCCcccccCCC-cceeee--c--CCCCccCh-----HHHHHHHHHHHHHHHHHHHh----hhcCCCCCCHHH
Q 011202 103 PLYRTS--GDNSVLYDHDL-ESYALF--D--MDGNQVPQ-----ELVTKVGEAFESILKETDKV----REEHDEDMSIQR 166 (491)
Q Consensus 103 ~~~~~~--~~~~~~~~~~~-~~~~~~--~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 166 (491)
...... ....+...... .....+ . .....+.+ .........+.++...+... .....++.++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 187 (498)
T 2iid_A 108 RLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKE 187 (498)
T ss_dssp CEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHHH
T ss_pred CceeecccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHHH
Confidence 754321 11111111000 000000 0 00000000 00111111112222111110 001123456666
Q ss_pred HHHHHHccChhhhhhhhHHHHHHHHHHhhhh---hhcCCccccchhcccccccccCCccccccchHHHHHHHhccC--Ce
Q 011202 167 AISIVFDRRPELRLEGLAHKVLQWYLCRMEG---WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL--DI 241 (491)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~gv--~i 241 (491)
|+.... .+....++.+...+.. ++......+... ...........+.+|++.++++|++.+ +|
T Consensus 188 ~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~i 255 (498)
T 2iid_A 188 YLIKEG---------DLSPGAVDMIGDLLNEDSGYYVSFIESLKHD---DIFAYEKRFDEIVDGMDKLPTAMYRDIQDKV 255 (498)
T ss_dssp HHHHTS---------CCCHHHHHHHHHHTTCGGGTTSBHHHHHHHH---HHHTTCCCEEEETTCTTHHHHHHHHHTGGGE
T ss_pred HHHHcc---------CCCHHHHHHHHHhcCcccchhHHHHHHHHHH---hccccCcceEEeCCcHHHHHHHHHHhccccc
Confidence 654321 0112222221111100 000000000000 000112345578899999999998755 89
Q ss_pred ecCceeEEEEecCCcEEEEEcCCc----EEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecC
Q 011202 242 RLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDK 317 (491)
Q Consensus 242 ~~~~~V~~I~~~~~~v~v~~~~g~----~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (491)
+++++|++|+.++++|.|++.+|+ ++.||+||+|+|+..+.. +.|.|.||+...+++..+++++..|+++.|++
T Consensus 256 ~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~--i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~ 333 (498)
T 2iid_A 256 HFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNPPLLPKKAHALRSVHYRSGTKIFLTCTT 333 (498)
T ss_dssp ESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESS
T ss_pred ccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhh--eecCCCCCHHHHHHHHhCCCcceeEEEEEeCC
Confidence 999999999998888988887765 489999999999987653 35678899999999999999999999999999
Q ss_pred CCCCCCcccee-ecCCCC-cceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCC-----Cc
Q 011202 318 VFWPNVEFLGV-VSDTSY-GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS-----PI 390 (491)
Q Consensus 318 ~~~~~~~~~g~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~-----~~ 390 (491)
+||++..+.+. ...+.. ...++.+...+.+..+++.++.+..+..+..++++++++.++++|+++++.... ..
T Consensus 334 ~~w~~~~~~~~~~~~~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~~~~ 413 (498)
T 2iid_A 334 KFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCY 413 (498)
T ss_dssp CGGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHEE
T ss_pred CCccCCCccCCcccCCCCcceEEECCCCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCCChhhhhhhcC
Confidence 99986543322 222222 223333333356677888888777777788899999999999999999973211 12
Q ss_pred EEEecccCCCCCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHHH
Q 011202 391 QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 463 (491)
Q Consensus 391 ~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l~ 463 (491)
.+.+++|..++++.|++.+..+++.....+.+.+|.+||||||++++.. .|+|+||+.||++||++|++.+.
T Consensus 414 ~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~-~g~~~GAi~SG~raA~~i~~~l~ 485 (498)
T 2iid_A 414 PSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNLASE 485 (498)
T ss_dssp EEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccC-CcCHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999987777776566778889999999999999874 58999999999999999988764
No 11
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=100.00 E-value=1.2e-37 Score=315.96 Aligned_cols=421 Identities=20% Similarity=0.241 Sum_probs=270.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCC-----------------CCceeecccceeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-----------------FGFPVDLGASWLHGVC 88 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-----------------~g~~~d~G~~~~~~~~ 88 (491)
.+.+||+|||||++||+||+.|+++|++|+|+|+++++||+++|... ++..+|.|+++++..
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 87 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQS- 87 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETT-
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccH-
Confidence 45789999999999999999999999999999999999999988654 577899999998743
Q ss_pred CCCcHHHHHHHcCCCeeeccCC--Ccccc-cCCCcceeeecCCCCccChH-HHHHHHHHHHHHHHHHHHhhhcCC-----
Q 011202 89 QENPLAPVISRLGLPLYRTSGD--NSVLY-DHDLESYALFDMDGNQVPQE-LVTKVGEAFESILKETDKVREEHD----- 159 (491)
Q Consensus 89 ~~~~~~~l~~~lg~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----- 159 (491)
. .+.++++++|+........ ..+++ .... ...+...... ........+..+........ ...
T Consensus 88 -~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 158 (489)
T 2jae_A 88 -H-ITLDYCRELGVEIQGFGNQNANTFVNYQSDT------SLSGQSVTYRAAKADTFGYMSELLKKATDQG-ALDQVLSR 158 (489)
T ss_dssp -S-THHHHHHHHTCCEEEECCCCTTSEEECCCSS------TTTTCCEEHHHHHHHHHHHHHHHHHHHHHHT-TTTTTSCH
T ss_pred -H-HHHHHHHHcCCceEEccccCCCceEEecCCc------ccCCccccHHHHhhhhhccHHHHHHHHHhcc-ccccccch
Confidence 3 8899999999985433221 11111 1100 0012222111 11111111111111111100 000
Q ss_pred -CCCCHHHHHHHHHccChhhhhhhhHHHHHHHHHHh-hhh-hhc-----CCccccchhccccc------ccccCCccccc
Q 011202 160 -EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEG-WFA-----ADAETISLKSWDKE------ELLPGGHGLMV 225 (491)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~s~~~~~~~------~~~~~~~~~~~ 225 (491)
++.++.+|+..+ +.... ...+.......++.. ... +.+ .+.+..+...+... ........++.
T Consensus 159 ~~~~~~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (489)
T 2jae_A 159 EDKDALSEFLSDF-GDLSD--DGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPV 235 (489)
T ss_dssp HHHHHHHHHHHHH-TTCCT--TSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSEEEET
T ss_pred hhHHHHHHHHHHh-hhhhh--ccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccEEeec
Confidence 112455555431 11000 000000000000000 000 000 01111111111110 01123456789
Q ss_pred cchHHHHHHHhcc---CCeecCceeEEEEecCCcEEEEEcCC---cEEEcCEEEEecchhhhccCcccccCCCchHHHHH
Q 011202 226 RGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 299 (491)
Q Consensus 226 ~G~~~l~~~l~~g---v~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~ 299 (491)
+|++.++++|++. .+|+++++|++|+.++++|.|++.+| +++.||+||+|+|+..+..+. + .+|+...+.
T Consensus 236 gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~--~--~l~~~~~~~ 311 (489)
T 2jae_A 236 GGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRLQ--N--NLPGDVLTA 311 (489)
T ss_dssp TCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTTSE--E--CCCHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHhCc--c--CCCHHHHHH
Confidence 9999999999873 57999999999999999998888776 689999999999999886542 2 677888889
Q ss_pred HhhcCCCcccEEEEEecCCCCCCC-ccceee-cCCCCcceee-ecccccCCceEEE-EEeccchhHHhhcCCHHHHHHHH
Q 011202 300 IDDLGVGIENKIIMHFDKVFWPNV-EFLGVV-SDTSYGCSYF-LNLHKATGHCVLV-YMPAGQLARDIEKMSDEAAANFA 375 (491)
Q Consensus 300 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~e~~~~~ 375 (491)
+..+++++..|+++.|++++|++. ...|.+ ..+.....++ .+...+...++++ +++.+.....|..++++++++.+
T Consensus 312 l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 391 (489)
T 2jae_A 312 LKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGVVVAYYSSGKRQEAFESLTHRQRLAKA 391 (489)
T ss_dssp HHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESSTTCEEECCSSSTTSSCEEEEEEEEETHHHHHHHTSCHHHHHHHH
T ss_pred HHhCCCccceEEEEEeCCCCccCCCCcccccccCCCCceEEEeCCCCCCCCCCEEEEEeeCCchhhhhhcCCHHHHHHHH
Confidence 999999999999999999999754 444332 2222222222 2222122234554 56777778888899999999999
Q ss_pred HHHHHHhCCC-C-CCCcEEEecccCCCCCCCcccccCC------CCCChhhHHHhcCCcCcEEEeccccCCCCCccchHH
Q 011202 376 FTQLKKILPD-A-SSPIQYLVSHWGTDANSLGSYSYDT------VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 447 (491)
Q Consensus 376 ~~~L~~~~p~-~-~~~~~~~~~~w~~~~~~~g~~~~~~------~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA 447 (491)
+++|++++|. . ..+.....++|..++++.|++.... +++.....+.+++|.+||||||++++. ++++++||
T Consensus 392 l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~~~-~~~~v~gA 470 (489)
T 2jae_A 392 IAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLSN-AIAWQHGA 470 (489)
T ss_dssp HHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGGBS-STTSHHHH
T ss_pred HHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHhcc-CccHHHHH
Confidence 9999999987 3 4566777889999999988887544 665556678888999999999999875 67899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011202 448 FSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 448 ~~sg~~aA~~i~~~l~~ 464 (491)
+.||++||++|+..+..
T Consensus 471 i~sg~~aA~~i~~~l~~ 487 (489)
T 2jae_A 471 LTSARDVVTHIHERVAQ 487 (489)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987653
No 12
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=100.00 E-value=1e-38 Score=322.55 Aligned_cols=407 Identities=18% Similarity=0.256 Sum_probs=270.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (491)
+++||+|||||++||+||++|+++| ++|+|||+++++||+++|...+|+.+|.|++++... ...+.++++++
T Consensus 4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~l~~~l 81 (470)
T 3i6d_A 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLER--KKSAPQLVKDL 81 (470)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETT--CTHHHHHHHHT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhC--CHHHHHHHHHc
Confidence 4579999999999999999999999 999999999999999999888999999999988743 56789999999
Q ss_pred CCCeeecc--CCCcccccCCCcceeeecCCCCccChHHHHHHHHHH----H--HHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 011202 101 GLPLYRTS--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAF----E--SILKETDKVREEHDEDMSIQRAISIVF 172 (491)
Q Consensus 101 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (491)
|+...... ....+.+... ....+........+..........+ . +.............++.++.+|+...
T Consensus 82 gl~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~- 159 (470)
T 3i6d_A 82 GLEHLLVNNATGQSYVLVNR-TLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRR- 159 (470)
T ss_dssp TCCTTEEECCCCCEEEECSS-CEEECCC---------------------CCSHHHHHHHHSCCCSSSSCCBHHHHHHHH-
T ss_pred CCcceeecCCCCccEEEECC-EEEECCCCcccCCcCchHHhhccCcCCHHHHHHHhcCcccCCCCCCCCcCHHHHHHHh-
Confidence 98743211 1111111111 0000000000000111100000000 0 00000101111234567888887543
Q ss_pred ccChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccccc---------cc-------------------cCCccc
Q 011202 173 DRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------LL-------------------PGGHGL 223 (491)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------~~-------------------~~~~~~ 223 (491)
+...+.+.++.++ .+.++.+++.++........ .. .+....
T Consensus 160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (470)
T 3i6d_A 160 ----------VGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQT 229 (470)
T ss_dssp ----------SCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-------------------------------EEE
T ss_pred ----------cCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEE
Confidence 3344445444443 35667777776643221100 00 124457
Q ss_pred cccchHHHHHHHhccC---CeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHH
Q 011202 224 MVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 300 (491)
Q Consensus 224 ~~~G~~~l~~~l~~gv---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~ 300 (491)
+.+|++.+++.|++.+ +|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..+.+++. .++ ..+.+
T Consensus 230 ~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~--~~~----~~~~~ 303 (470)
T 3i6d_A 230 LSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLS--ELP----AISHL 303 (470)
T ss_dssp ETTCTHHHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHHHTT--TST----THHHH
T ss_pred eCChHHHHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHHHcC--Cch----hhHHH
Confidence 8899999999998865 79999999999999888999999998899999999999998765432 222 24677
Q ss_pred hhcCCCcccEEEEEecCCCCCCC-ccceeecCCCCcc----eeee----cccccCCceEEEEEeccchhHHhhcCCHHHH
Q 011202 301 DDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSYGC----SYFL----NLHKATGHCVLVYMPAGQLARDIEKMSDEAA 371 (491)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~ 371 (491)
..+++.+..++.+.|++++|+.. ...+.+.+..... ..|. ....|.+..++.++..+...+.+..++++++
T Consensus 304 ~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 383 (470)
T 3i6d_A 304 KNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDI 383 (470)
T ss_dssp HTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHH
T ss_pred hcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHH
Confidence 88899999999999999999753 3345554432211 1121 2233556677777776666667788999999
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCC---hhhHHHhcCCcCcEEEeccccCCCCCccchHHH
Q 011202 372 ANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 448 (491)
Q Consensus 372 ~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~ 448 (491)
++.++++|++++|...+|..+.+++|... .+.+ .+|.. ....+.+.++.+|||+||+++. +.++++|+
T Consensus 384 ~~~~~~~l~~~~g~~~~p~~~~~~~w~~a---~p~~---~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~---g~gv~~a~ 454 (470)
T 3i6d_A 384 INIVLEDLKKVMNINGEPEMTCVTRWHES---MPQY---HVGHKQRIKELREALASAYPGVYMTGASFE---GVGIPDCI 454 (470)
T ss_dssp HHHHHHHHGGGSCCCSCCSEEEEEEEEEE---EEEC---BTTHHHHHHHHHHHHHHHSTTEEECSTTTS---CCSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEEcCCc---cCCC---CCCHHHHHHHHHHHHHhhCCCEEEEeecCC---CCCHHHHH
Confidence 99999999999987778888899999642 1122 23321 2334556677889999999874 34799999
Q ss_pred HHHHHHHHHHHHHH
Q 011202 449 STGLMAAEDCRMRV 462 (491)
Q Consensus 449 ~sg~~aA~~i~~~l 462 (491)
.||.++|++|++.|
T Consensus 455 ~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 455 DQGKAAVSDALTYL 468 (470)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 13
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=3.6e-38 Score=319.01 Aligned_cols=408 Identities=19% Similarity=0.222 Sum_probs=266.0
Q ss_pred ccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHH
Q 011202 20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISR 99 (491)
Q Consensus 20 ~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~ 99 (491)
+.|.+...++||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|++++.. ....+.+++++
T Consensus 8 ~~~~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~--~~~~~~~~~~~ 85 (478)
T 2ivd_A 8 HHHMPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD--REPATRALAAA 85 (478)
T ss_dssp ---------CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET--TCHHHHHHHHH
T ss_pred cccCCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhh--hhHHHHHHHHH
Confidence 3455566789999999999999999999999999999999999999999998899999999999984 35678999999
Q ss_pred cCCCeeec--c--CCCcccccCCCcceeeecCCCCccChHHHHHHHHH---HHHHHHHHHHhhh---cCCCCCCHHHHHH
Q 011202 100 LGLPLYRT--S--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEA---FESILKETDKVRE---EHDEDMSIQRAIS 169 (491)
Q Consensus 100 lg~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~ 169 (491)
+|+..... . ....+++... .. ..++......+... +......+..... ...++.++.+|+.
T Consensus 86 ~gl~~~~~~~~~~~~~~~~~~~g-~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 156 (478)
T 2ivd_A 86 LNLEGRIRAADPAAKRRYVYTRG-RL--------RSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGR 156 (478)
T ss_dssp TTCGGGEECSCSSCCCEEEEETT-EE--------EECCCSHHHHHTCSSSCHHHHHHHHGGGGCCCCCTTCCCBHHHHHH
T ss_pred cCCcceeeecCccccceEEEECC-EE--------EECCCCHHHhccCCCCCHHHHHHHhhhhhcCCCCCCCCCCHHHHHH
Confidence 99863211 1 1111111111 00 01111111000000 0000111111111 1245678998876
Q ss_pred HHHccChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhccccc----------------------------cccc--
Q 011202 170 IVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE----------------------------ELLP-- 218 (491)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~----------------------------~~~~-- 218 (491)
.. +.+.+.+.++.++ ...++.+++.+++..+... ....
T Consensus 157 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (478)
T 2ivd_A 157 RH-----------LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPK 225 (478)
T ss_dssp HH-----------TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCC
T ss_pred Hh-----------hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCccccccc
Confidence 43 3344444444443 3456666666654321100 0011
Q ss_pred --CCccccccchHHHHHHHhc--cCCeecCceeEEEEecCCcEEEEE---cCCcEEEcCEEEEecchhhhccCcccccCC
Q 011202 219 --GGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVLKARTIKFEPR 291 (491)
Q Consensus 219 --~~~~~~~~G~~~l~~~l~~--gv~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~ 291 (491)
.+..++.+|+..++++|++ |++|+++++|++|+.+++++.|++ .+|+++.||+||+|+|+..+..+ .|.
T Consensus 226 ~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~l----l~~ 301 (478)
T 2ivd_A 226 LSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKL----LRP 301 (478)
T ss_dssp CCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHH----HTT
T ss_pred ccccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHH----hhc
Confidence 5567899999999999987 569999999999999888888887 67778999999999999887643 255
Q ss_pred CchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCC---CC-cceeeecc----cccCCceEEEEEeccchhHHh
Q 011202 292 LPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT---SY-GCSYFLNL----HKATGHCVLVYMPAGQLARDI 363 (491)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~---~~-~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 363 (491)
+++...+.+..+++.+..++++.|++++|+.....+.+.+. .. ....+.+. ..+++..+++++..+..+..+
T Consensus 302 l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~ 381 (478)
T 2ivd_A 302 LDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGL 381 (478)
T ss_dssp TCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGG
T ss_pred cCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccc
Confidence 77777888899999988999999999999763223443321 11 11233221 124566677777776666667
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCCh---hhHHHhcCCcCcEEEeccccCCCC
Q 011202 364 EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DLYERLRIPVDNLFFAGEATSMSY 440 (491)
Q Consensus 364 ~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~~~~~~~p~~~l~~aG~~~~~~~ 440 (491)
...+++++++.++++|++++|....|....+++|.... +.+ .+++.. ...+.+.+ .+||||||+++.
T Consensus 382 ~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~---p~~---~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~--- 451 (478)
T 2ivd_A 382 VEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGI---PQY---NLGHLERVAAIDAALQR-LPGLHLIGNAYK--- 451 (478)
T ss_dssp GGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCC---BCC---BTTHHHHHHHHHHHHHT-STTEEECSTTTS---
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcc---cCC---CcCHHHHHHHHHHHHhh-CCCEEEEccCCC---
Confidence 78899999999999999999877678888888997531 111 233311 11122333 689999999972
Q ss_pred CccchHHHHHHHHHHHHHHHHHH
Q 011202 441 PGSVHGAFSTGLMAAEDCRMRVL 463 (491)
Q Consensus 441 ~g~~egA~~sg~~aA~~i~~~l~ 463 (491)
+.+++||+.||++||++|+..+.
T Consensus 452 g~gv~gA~~SG~~aA~~i~~~l~ 474 (478)
T 2ivd_A 452 GVGLNDCIRNAAQLADALVAGNT 474 (478)
T ss_dssp CCSHHHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHHHHHhhc
Confidence 34799999999999999876543
No 14
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=100.00 E-value=1.2e-36 Score=309.77 Aligned_cols=407 Identities=19% Similarity=0.223 Sum_probs=263.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
|.+.+||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|+++++. ....+.++++++|+..
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~lgl~~ 87 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE--SEGDVTFLIDSLGLRE 87 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC--CSHHHHHHHHHTTCGG
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc--CcHHHHHHHHHcCCcc
Confidence 34568999999999999999999999999999999999999999988899999999999873 3457899999999864
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccChHHHHHH-------HHHHHHHHHHHHHhh----hcCCCCCCHHHHHHHHHc
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKV-------GEAFESILKETDKVR----EEHDEDMSIQRAISIVFD 173 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 173 (491)
........ ...+.+.......++....... ...+..+........ .....+.++.+|+...
T Consensus 88 ~~~~~~~~------~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-- 159 (504)
T 1sez_A 88 KQQFPLSQ------NKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRH-- 159 (504)
T ss_dssp GEECCSSC------CCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHH--
T ss_pred cceeccCC------CceEEEECCeEEECCCCHHHHhccccCCHHHHHHHhHhhhccCcccccccCCCCccHHHHHHHH--
Confidence 32111100 0000010000001111110000 001111111100000 0123457888887543
Q ss_pred cChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccc------------------cc------------------c
Q 011202 174 RRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK------------------EE------------------L 216 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~------------------~~------------------~ 216 (491)
+.+.+++.++.++ .+.++.+++.+++..... .. .
T Consensus 160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (504)
T 1sez_A 160 ---------FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKK 230 (504)
T ss_dssp ---------HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCS
T ss_pred ---------cCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccc
Confidence 3445555555554 346666776665432110 00 0
Q ss_pred ccCCccccccchHHHHHHHhcc---CCeecCceeEEEEecCCc------EEEEEc--CC---cEEEcCEEEEecchhhhc
Q 011202 217 LPGGHGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIG------VKVTVE--GG---KTFVADAVVVAVPLGVLK 282 (491)
Q Consensus 217 ~~~~~~~~~~G~~~l~~~l~~g---v~i~~~~~V~~I~~~~~~------v~v~~~--~g---~~~~ad~VI~a~p~~~l~ 282 (491)
...+..++.+|++.++++|++. ++|+++++|++|..++++ +.|++. +| +++.||+||+|+|+..+.
T Consensus 231 ~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~ 310 (504)
T 1sez_A 231 RQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVK 310 (504)
T ss_dssp TTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHH
T ss_pred cCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHH
Confidence 1224667899999999999873 579999999999988777 777764 45 578999999999999988
Q ss_pred cCccc-ccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC-ccceeecCCCC-------cceee----ecccccCCce
Q 011202 283 ARTIK-FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY-------GCSYF----LNLHKATGHC 349 (491)
Q Consensus 283 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~~-------~~~~~----~~~~~~~~~~ 349 (491)
+++.. ..+.+++. .+..+.+.+..++.+.|++++|++. ...+++.+... ....+ +....|++..
T Consensus 311 ~ll~~~~~~~~~~~---~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~ 387 (504)
T 1sez_A 311 SMKIAKRGNPFLLN---FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVY 387 (504)
T ss_dssp TSEEESSSSBCCCT---TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEE
T ss_pred HHhhcccCCcccHH---HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCE
Confidence 76521 11122221 1556777788899999999988742 22244332211 01111 1222356667
Q ss_pred EEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCCh--hhHHHhcCCcC
Q 011202 350 VLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH--DLYERLRIPVD 427 (491)
Q Consensus 350 ~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~--~~~~~~~~p~~ 427 (491)
+++++..+..+..+..++++|+++.++++|+++++...+|..+.+.+|... +....++... ...+...+|++
T Consensus 388 ~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~------~p~~~~g~~~~~~~~~~~~~~~~ 461 (504)
T 1sez_A 388 LYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKA------FPLYGHNYDSVLDAIDKMEKNLP 461 (504)
T ss_dssp EEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEE------EECCCTTHHHHHHHHHHHHHHST
T ss_pred EEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCC------CCccCcCHHHHHHHHHHHHHhCC
Confidence 778888777777788899999999999999999987667888888999643 1111222211 12234556789
Q ss_pred cEEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 428 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 428 ~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
|||+||++++ ++++++|+.||++||++|++.+
T Consensus 462 ~l~~aG~~~~---g~~v~gai~sG~~aA~~il~~l 493 (504)
T 1sez_A 462 GLFYAGNHRG---GLSVGKALSSGCNAADLVISYL 493 (504)
T ss_dssp TEEECCSSSS---CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeecCC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999984 3589999999999999998765
No 15
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=100.00 E-value=1.7e-36 Score=306.46 Aligned_cols=402 Identities=19% Similarity=0.242 Sum_probs=268.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (491)
++||+|||||++||+||++|+++| ++|+|+|+++++||+++|...+|+.+|.|++++... ...+.++++++|++..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~--~~~~~~l~~~lg~~~~ 81 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR--KHILTDLIEAIGLGEK 81 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETT--STHHHHHHHHTTCGGG
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcc--cHHHHHHHHHcCCcce
Confidence 579999999999999999999999 999999999999999999888999999999998743 5678999999999743
Q ss_pred ecc--CCCcccccCCCcceeeecCCC-CccChHHHHHH----HHHHHH-HHHHHHHhhhc----CCCCCCHHHHHHHHHc
Q 011202 106 RTS--GDNSVLYDHDLESYALFDMDG-NQVPQELVTKV----GEAFES-ILKETDKVREE----HDEDMSIQRAISIVFD 173 (491)
Q Consensus 106 ~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 173 (491)
... ....+.+... ....+.... ...|....... .....+ ........... ..++.++.+|+...
T Consensus 82 ~~~~~~~~~~~~~~g--~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-- 157 (475)
T 3lov_A 82 LVRNNTSQAFILDTG--GLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQEVADLLLHPSDSLRIPEQDIPLGEYLRPR-- 157 (475)
T ss_dssp EEECCCCCEEEEETT--EEEECCSSEETTEESCHHHHTTCSSSCHHHHHHHHHHHHSCCTTCCCCSSCCBHHHHHHHH--
T ss_pred EeecCCCceEEEECC--EEEECCCcccccCcCchHHHhhccCCChhHHHHhhCcccCCcccccCCCCCcCHHHHHHHH--
Confidence 221 1112222111 000000000 00000000000 000001 11111111111 34577888887543
Q ss_pred cChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhccccc---------cc----------------------ccCCc
Q 011202 174 RRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------EL----------------------LPGGH 221 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------~~----------------------~~~~~ 221 (491)
+..++.+.++.++ .+.++.+++.++....... .. ..+.+
T Consensus 158 ---------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (475)
T 3lov_A 158 ---------LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQF 228 (475)
T ss_dssp ---------HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSE
T ss_pred ---------hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcE
Confidence 3344555555543 4577777777665422110 00 02345
Q ss_pred cccccchHHHHHHHhccC---CeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHH
Q 011202 222 GLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEA 298 (491)
Q Consensus 222 ~~~~~G~~~l~~~l~~gv---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~ 298 (491)
.++.+|++.+++.|++.+ +|+++++|++|+.+++++.|++.+| ++.||+||+|+|+..+.+++.. +.+ .
T Consensus 229 ~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~--~~~-----~ 300 (475)
T 3lov_A 229 LSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPD--AHL-----P 300 (475)
T ss_dssp EEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHCTT--SCC-----H
T ss_pred EeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHcCc--cCH-----H
Confidence 678899999999998754 8999999999999988999999899 8999999999999987664322 222 6
Q ss_pred HHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCcc----eeeec----ccccCCceEEEEEeccchhHHhhcCCHHH
Q 011202 299 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGC----SYFLN----LHKATGHCVLVYMPAGQLARDIEKMSDEA 370 (491)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e 370 (491)
.+..+++.+..++.+.|+++++.+....|++.+..... ..|.+ ...|. ...+.+++.+.....+..+++++
T Consensus 301 ~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~ 379 (475)
T 3lov_A 301 ELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEV 379 (475)
T ss_dssp HHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHH
T ss_pred HHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHH
Confidence 67888999999999999998843333345554332211 11211 12233 45566676666666778899999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCC---hhhHHHhcCCcCcEEEeccccCCCCCccchHH
Q 011202 371 AANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 447 (491)
Q Consensus 371 ~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA 447 (491)
+++.++++|+++++....|....+++|.... +.| .+|.. ....+.+.++.+|||+||+++. +.++++|
T Consensus 380 ~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~---p~~---~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~---g~g~~~a 450 (475)
T 3lov_A 380 LQQAVLQDLEKICGRTLEPKQVIISRLMDGL---PAY---TVGHADRIQRVREEVLAQYPGIYLAGLAYD---GVGLPDC 450 (475)
T ss_dssp HHHHHHHHHHHHHSSCCCCSEEEEEEEEEEE---ECC---CTTHHHHHHHHHHHHHHHSTTEEECSTTTS---CSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEEcccCC---CCC---CCChHHHHHHHHHHHHhhCCCEEEEccCCC---CCCHHHH
Confidence 9999999999999876678888999997541 111 23321 2234456677889999999874 3479999
Q ss_pred HHHHHHHHHHHHHHH
Q 011202 448 FSTGLMAAEDCRMRV 462 (491)
Q Consensus 448 ~~sg~~aA~~i~~~l 462 (491)
+.||+++|++|+..+
T Consensus 451 ~~sG~~aA~~i~~~l 465 (475)
T 3lov_A 451 VASAKTMIESIELEQ 465 (475)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 16
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=100.00 E-value=3.9e-36 Score=305.94 Aligned_cols=429 Identities=15% Similarity=0.140 Sum_probs=207.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCee--
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY-- 105 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~-- 105 (491)
|++|+|||||++||+||++|+++|++|+||||++++||+++|...+|+.+|.|++++.. ...+.++++.++....
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~---~~~~~~l~~~~g~~~~~~ 77 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD---PSAIEELFALAGKQLKEY 77 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC---THHHHHHHHTTTCCGGGT
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC---chhHHHHHHHhcchhhhc
Confidence 57899999999999999999999999999999999999999999999999999998852 2456778888775432
Q ss_pred ----eccCCCcccccCCCcceeeecCCCCccChHH---HHHHHHHHHHHHHHHHHhhhcC------CCCCCHHHHHHHHH
Q 011202 106 ----RTSGDNSVLYDHDLESYALFDMDGNQVPQEL---VTKVGEAFESILKETDKVREEH------DEDMSIQRAISIVF 172 (491)
Q Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 172 (491)
+......+.+... ... .+..+...+...+ .....+.+.++...+....... ....++.+.+....
T Consensus 78 ~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (501)
T 4dgk_A 78 VELLPVTPFYRLCWESG-KVF-NYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAP 155 (501)
T ss_dssp CCEEEESSSEEEEETTS-CEE-EECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGG
T ss_pred eeeEecCcceEEEcCCC-CEE-EeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhhh
Confidence 1111100111100 000 0100000000000 0112233445555544443221 11234444332111
Q ss_pred ccC--------hhhhhhhhHHHHHHHHHHhhhhhhcCCccccchhc-ccccccccCCccccccchHHHHHHHhc-----c
Q 011202 173 DRR--------PELRLEGLAHKVLQWYLCRMEGWFAADAETISLKS-WDKEELLPGGHGLMVRGYLPVINTLAK-----G 238 (491)
Q Consensus 173 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~G~~~l~~~l~~-----g 238 (491)
... .......+.++.++.++.......+..+...+... +........|.+++.||++.++++|++ |
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~G~~~p~GG~~~l~~aL~~~~~~~G 235 (501)
T 4dgk_A 156 QLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLG 235 (501)
T ss_dssp GTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHSCCCEEEETTHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcchhhhhhhhhhhhhccCCeEEeCCCCcchHHHHHHHHHHhC
Confidence 000 00011112222233333322233333433332211 111122345667899999999999864 8
Q ss_pred CCeecCceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCc-ccEEEEEec
Q 011202 239 LDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI-ENKIIMHFD 316 (491)
Q Consensus 239 v~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~v~~~~~ 316 (491)
++|+++++|++|..+++++ .|++++|+++.||.||+++++..+...+..-. ..+....+.+...++.. ..++++.++
T Consensus 236 g~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~s~~~~~~~l~ 314 (501)
T 4dgk_A 236 GEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQH-PAAVKQSNKLQTKRMSNSLFVLYFGLN 314 (501)
T ss_dssp CEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----------------------------CCEEEEEEEEES
T ss_pred CceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcccc-ccchhhhhhhhccccCCceeEEEeccc
Confidence 8999999999999999986 58899999999999999998876644333322 22333344555555544 347778877
Q ss_pred CCCCCCCccceeecC------------CCC--cceee-------ecccccCCceEEEEEeccch----hHHhhcCCHHHH
Q 011202 317 KVFWPNVEFLGVVSD------------TSY--GCSYF-------LNLHKATGHCVLVYMPAGQL----ARDIEKMSDEAA 371 (491)
Q Consensus 317 ~~~~~~~~~~g~~~~------------~~~--~~~~~-------~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~e~ 371 (491)
.+.-.-....-++.. ... ....+ +....|+|++.+.+++..+. ...|. ..++++
T Consensus 315 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 393 (501)
T 4dgk_A 315 HHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWT-VEGPKL 393 (501)
T ss_dssp SCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTSCCCHH-HHHHHH
T ss_pred CCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccccccHH-HHHHHH
Confidence 643110000000000 000 01111 11234667776655543221 11122 235778
Q ss_pred HHHHHHHHHHhC-CCCCCCcEEEe----cccCCCCC-CCcc-cccC-CCCCChhhHHH-hcCCcCcEEEeccccCCCCCc
Q 011202 372 ANFAFTQLKKIL-PDASSPIQYLV----SHWGTDAN-SLGS-YSYD-TVGKSHDLYER-LRIPVDNLFFAGEATSMSYPG 442 (491)
Q Consensus 372 ~~~~~~~L~~~~-p~~~~~~~~~~----~~w~~~~~-~~g~-~~~~-~~~~~~~~~~~-~~~p~~~l~~aG~~~~~~~~g 442 (491)
.+++++.|++.+ |++++.+.... ..|..... ..|. |... ...+....+|. ..+|++|||+||+++.+ ++
T Consensus 394 ~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~p--G~ 471 (501)
T 4dgk_A 394 RDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHP--GA 471 (501)
T ss_dssp HHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------------CCTTEEECCCH-------
T ss_pred HHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCCC--cc
Confidence 899999998754 87654322221 12322111 1121 1111 12232234454 35889999999999865 35
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 011202 443 SVHGAFSTGLMAAEDCRMRVLER 465 (491)
Q Consensus 443 ~~egA~~sg~~aA~~i~~~l~~~ 465 (491)
+++||+.||+.||+.|++.|..+
T Consensus 472 Gv~ga~~SG~~aA~~il~dL~gG 494 (501)
T 4dgk_A 472 GIPGVIGSAKATAGLMLEDLIGG 494 (501)
T ss_dssp -HHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999987644
No 17
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=2.6e-35 Score=293.55 Aligned_cols=396 Identities=16% Similarity=0.114 Sum_probs=255.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeecc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (491)
+||+|||||++||+||++|+++|++|+||||++++||++++...+|+.+|.|++++.+......+.++++++|+......
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR 80 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence 58999999999999999999999999999999999999999989999999998766543344578999999998643221
Q ss_pred CCCc-ccccC-C-C------cceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhh
Q 011202 109 GDNS-VLYDH-D-L------ESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR 179 (491)
Q Consensus 109 ~~~~-~~~~~-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (491)
.... ..+.. + . .....+......+... . ..++.............+.++.+|+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~------ 147 (425)
T 3ka7_A 81 SEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYK--D-----RMKIALLIVSTRKNRPSGSSLQAWIKSQVS------ 147 (425)
T ss_dssp CCCCEEEEESSTTCCSSTTCEEEEEGGGGGGGSCHH--H-----HHHHHHHHHHTTTSCCCSSBHHHHHHHHCC------
T ss_pred cCCceEEeecCCCcccccccccceehhhhhhhCCHH--H-----HHHHHHHHHhhhhcCCCCCCHHHHHHHhcC------
Confidence 1111 11110 0 0 0000000000011111 0 111222222222234457788888765432
Q ss_pred hhhhHHHHHHHHHHhhh-hhhcCCccccchhccc---ccccccCCccccccchHHHHHHHhc-----cCCeecCceeEEE
Q 011202 180 LEGLAHKVLQWYLCRME-GWFAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKI 250 (491)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I 250 (491)
.+.++.++.++. ..++.++..++..... ......++..++.+|++.++++|.+ |++|+++++|++|
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i 222 (425)
T 3ka7_A 148 -----DEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKI 222 (425)
T ss_dssp -----CHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred -----CHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEE
Confidence 233444444433 4566677776654222 1112345677899999998888864 8899999999999
Q ss_pred EecCCcEE-EEEcCCcEEEcCEEEEecchhhhccCcccccCCC--chHHHHHHhhcCCCcccEEEEEecCCCCCCCccce
Q 011202 251 TRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL--PDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG 327 (491)
Q Consensus 251 ~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 327 (491)
..+++++. |++ +|+++.||.||+|+|++.+.+++.. .+.+ ++...+.+..+.+++..++++.++++.+... +
T Consensus 223 ~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~---~ 297 (425)
T 3ka7_A 223 LIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLCSE-ALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGHT---G 297 (425)
T ss_dssp EEETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHTTT-TCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSCSS---S
T ss_pred EEECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhcCC-cccccCCHHHHHHhhCcCCCceEEEEeecCCCccCcC---E
Confidence 99888875 666 4778999999999999887654322 2223 6667778888988888899999999876432 2
Q ss_pred eecCCCCc-c--eee----ecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCC
Q 011202 328 VVSDTSYG-C--SYF----LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD 400 (491)
Q Consensus 328 ~~~~~~~~-~--~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~ 400 (491)
.+...... . ..+ .....|+|++.+.++.... .+ ..+. ++++++.++++|++++|+ ..+....+++|...
T Consensus 298 ~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~-~~-~~~~-~~~~~~~~~~~l~~~~p~-~~~~~~~v~~~~~~ 373 (425)
T 3ka7_A 298 VLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVA-PE-NVKN-LESEIEMGLEDLKEIFPG-KRYEVLLIQSYHDE 373 (425)
T ss_dssp EEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEEC-GG-GGGG-HHHHHHHHHHHHHHHSTT-CCEEEEEEEEEBTT
T ss_pred EEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccc-cc-cccc-hHHHHHHHHHHHHHhCCC-CceEEEEEEEECCC
Confidence 22211111 1 111 1223466777765554321 11 1222 356679999999999997 34445567788742
Q ss_pred CCCCcccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 401 ANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 401 ~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
.+.+ .++. ..++..++|++|||+|||++...++.+|++|+.||++||++|+
T Consensus 374 ---~P~~---~~~~--~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 374 ---WPVN---RAAS--GTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp ---BCSB---SSCT--TCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred ---cccc---cccc--CCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence 1111 2222 2335567889999999999988666799999999999999875
No 18
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=100.00 E-value=1.8e-35 Score=302.95 Aligned_cols=243 Identities=20% Similarity=0.193 Sum_probs=179.4
Q ss_pred CccccccchHHHHHHHhc----cCCeecCceeE--EEEecCCc-------EEE-EEcCCc--EEEcCEEEEecchhhhcc
Q 011202 220 GHGLMVRGYLPVINTLAK----GLDIRLGHRVT--KITRHYIG-------VKV-TVEGGK--TFVADAVVVAVPLGVLKA 283 (491)
Q Consensus 220 ~~~~~~~G~~~l~~~l~~----gv~i~~~~~V~--~I~~~~~~-------v~v-~~~~g~--~~~ad~VI~a~p~~~l~~ 283 (491)
....+.||+++++++|++ |..|+++++|+ +|..++++ |.| ...+|+ ++.||+||+|+|+..+..
T Consensus 338 ~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~~ 417 (721)
T 3ayj_A 338 EYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLTP 417 (721)
T ss_dssp EECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHHH
T ss_pred ceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHhh
Confidence 356788999999998865 56799999999 99986544 888 456676 789999999999988742
Q ss_pred ----Cccc----------------------ccCCC-c-------hHHHHHHhhcCCCcccEEEEEe-----cCCCCCCC-
Q 011202 284 ----RTIK----------------------FEPRL-P-------DWKEAAIDDLGVGIENKIIMHF-----DKVFWPNV- 323 (491)
Q Consensus 284 ----~~~~----------------------~~~~l-~-------~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~- 323 (491)
..+. ++|.| | ....+++.++++++.+|+++.| +++||.+.
T Consensus 418 ~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~ 497 (721)
T 3ayj_A 418 IVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWR 497 (721)
T ss_dssp HHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEET
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccC
Confidence 1122 24445 8 7888999999999999999999 99999865
Q ss_pred -ccceeecCCCCcc-eee-ecc----cccCCce-EEEEEeccchhHHh------hcCCHHHH-------HHHHHHHHH--
Q 011202 324 -EFLGVVSDTSYGC-SYF-LNL----HKATGHC-VLVYMPAGQLARDI------EKMSDEAA-------ANFAFTQLK-- 380 (491)
Q Consensus 324 -~~~g~~~~~~~~~-~~~-~~~----~~~~~~~-~l~~~~~~~~~~~~------~~~~~~e~-------~~~~~~~L~-- 380 (491)
..++....+.... .++ +++ ..+++.+ ++..|++++.+..+ ..++++|. ++.++++|+
T Consensus 498 g~~i~~s~TD~~~r~~~~~p~p~~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~ 577 (721)
T 3ayj_A 498 GEPIKAVVSDSGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRY 577 (721)
T ss_dssp TEECCEEEETTTTEEEEEEECSCC----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCE
T ss_pred CCCceeeecCCCcceEEEeccCcccccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhh
Confidence 2233333333332 333 211 1133334 56688998888888 44454444 999999999
Q ss_pred HhCCCCC-----------C---CcEEEecccCCCCCCCcccccCCCCCCh--hhHHH------hcCCcCcEEEeccccCC
Q 011202 381 KILPDAS-----------S---PIQYLVSHWGTDANSLGSYSYDTVGKSH--DLYER------LRIPVDNLFFAGEATSM 438 (491)
Q Consensus 381 ~~~p~~~-----------~---~~~~~~~~w~~~~~~~g~~~~~~~~~~~--~~~~~------~~~p~~~l~~aG~~~~~ 438 (491)
+++|+.. . +.++..++|..++ +.|+|+...+|+.. ..... ...|.++||||||++|.
T Consensus 578 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~~S~ 656 (721)
T 3ayj_A 578 VKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDSYSH 656 (721)
T ss_dssp ECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGGGSS
T ss_pred ccCccccccccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehhhcc
Confidence 8998754 1 3456788999999 99999988888821 11222 23467899999999997
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHH
Q 011202 439 SYPGSVHGAFSTGLMAAEDCRMRVLE 464 (491)
Q Consensus 439 ~~~g~~egA~~sg~~aA~~i~~~l~~ 464 (491)
+.||+|||+.||++||..|...+..
T Consensus 657 -~~GWieGAl~Sa~~Aa~~i~~~~~~ 681 (721)
T 3ayj_A 657 -LGGWLEGAFMSALNAVAGLIVRANR 681 (721)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCceehHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999887654
No 19
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=278.06 Aligned_cols=323 Identities=18% Similarity=0.222 Sum_probs=230.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEeeCCCCcceeeecCC---CCceeecccceeeCCCCCC---cHHHHHH
Q 011202 28 SPSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDRVGGRVHTDYS---FGFPVDLGASWLHGVCQEN---PLAPVIS 98 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~---~G~~V~vlE~~~~~GG~~~s~~~---~g~~~d~G~~~~~~~~~~~---~~~~l~~ 98 (491)
++||+|||||++||++|+.|++ .|++|+||||++.+||++.+... .+..+|.|..++.... . .+..+++
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~--~~~~~~~~~~~ 78 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTP--HYAKKHQRFYD 78 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECS--SHHHHTHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCc--hHHHHHHHHHH
Confidence 3699999999999999999999 99999999999999999887654 3456777776654210 0 0001110
Q ss_pred HcCCCeeeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhh
Q 011202 99 RLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPEL 178 (491)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (491)
.+ .. .
T Consensus 79 ~~---------------------------------------------------~~---~--------------------- 83 (342)
T 3qj4_A 79 EL---------------------------------------------------LA---Y--------------------- 83 (342)
T ss_dssp HH---------------------------------------------------HH---T---------------------
T ss_pred HH---------------------------------------------------Hh---C---------------------
Confidence 00 00 0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhcCCccccchhcccccccccCCccccccchHHHHHHHhc--cCCeecCceeEEEEecCCc
Q 011202 179 RLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIG 256 (491)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~--gv~i~~~~~V~~I~~~~~~ 256 (491)
+. ...+. ..... .........+...+|+..+.+++.+ |++|+++++|++|+.++++
T Consensus 84 ---g~-----------~~~~~-~~~~~-------~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~ 141 (342)
T 3qj4_A 84 ---GV-----------LRPLS-SPIEG-------MVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK 141 (342)
T ss_dssp ---TS-----------CEECC-SCEET-------CCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS
T ss_pred ---CC-----------eecCc-hhhcc-------eeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE
Confidence 00 00000 00000 0000011234567789999999987 8999999999999999889
Q ss_pred EEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCcc
Q 011202 257 VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGC 336 (491)
Q Consensus 257 v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 336 (491)
|.|++.+|+++.+|.||+|+|+..+.+++..+.|.+|+...+.+..++|.+..++.+.|++++|.+..+.|...++....
T Consensus 142 ~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~ 221 (342)
T 3qj4_A 142 WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCI 221 (342)
T ss_dssp EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSE
T ss_pred EEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcce
Confidence 99999899778999999999999988876666667888888899999999999999999999887777778876544433
Q ss_pred ee-eecccccC-----CceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccC
Q 011202 337 SY-FLNLHKAT-----GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYD 410 (491)
Q Consensus 337 ~~-~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~ 410 (491)
.+ +.+..++. +...+++...+..++.+.+++++++++.++++|+++++...+|..+.+++|......++. ..
T Consensus 222 ~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~--~~ 299 (342)
T 3qj4_A 222 RFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAA--AN 299 (342)
T ss_dssp EEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCC--SS
T ss_pred EEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcCCHHHHHHHHHHHHHHhccCCCCCceeeecccccccccccc--CC
Confidence 33 23332222 234667777777777788899999999999999999998888999999999754322111 00
Q ss_pred CCCCChhhHHHhc-CCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 011202 411 TVGKSHDLYERLR-IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 411 ~~~~~~~~~~~~~-~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~ 461 (491)
.++. +. .+.++|++|||++ .++++|+|+.||..||+.|+..
T Consensus 300 ~~~~-------~~~~~~~~l~laGd~~---~g~~v~~ai~sg~~aa~~i~~~ 341 (342)
T 3qj4_A 300 CPGQ-------MTLHHKPFLACGGDGF---TQSNFDGCITSALCVLEALKNY 341 (342)
T ss_dssp SCSC-------EEEETTTEEEECSGGG---SCSSHHHHHHHHHHHHHHHTTC
T ss_pred Ccce-------eEecCCccEEEEcccc---CCCCccHHHHHHHHHHHHHHhh
Confidence 1111 11 3567999999998 3569999999999999988653
No 20
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=296.24 Aligned_cols=398 Identities=21% Similarity=0.228 Sum_probs=257.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCCCCcceeeecCC-CCceeecccceeeCCC-CCCcHHHHHHHcCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVC-QENPLAPVISRLGLP 103 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-~~~~~~~l~~~lg~~ 103 (491)
++||+|||||++||+||++|+++|+ +|+|||+++++||+++|... +|+.+|.|++++.... ....+.++++++|+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 81 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLD 81 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCG
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCc
Confidence 5799999999999999999999999 99999999999999999654 5899999999875321 123478999999987
Q ss_pred e--eeccCC-----Cccccc-CCCccee-----eecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 011202 104 L--YRTSGD-----NSVLYD-HDLESYA-----LFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI 170 (491)
Q Consensus 104 ~--~~~~~~-----~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (491)
. ...... ..+.+. +.....+ .... ...+.... .......... .....++.++.+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~-~~~~~~~~s~~~~~~~ 152 (477)
T 3nks_A 82 SEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRP-SPPFSKPL-------FWAGLRELTK-PRGKEPDETVHSFAQR 152 (477)
T ss_dssp GGEEEECTTSHHHHCEEEEETTEEEECCCSSCC---C-CTTSCSCS-------SHHHHTTTTS-CCCCSSCCBHHHHHHH
T ss_pred ceeeecCCCCchhcceEEEECCEEEECCCChhhcccc-cchhhhHH-------HHHHHHhhhc-CCCCCCCcCHHHHHHH
Confidence 2 211110 011111 1100000 0000 00000000 0011111100 1123356788888754
Q ss_pred HHccChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccccc---------------------------------c
Q 011202 171 VFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------------------------------L 216 (491)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------------------------------~ 216 (491)
. +..++.+.++.++ .+.++.++..++........ .
T Consensus 153 ~-----------~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~ 221 (477)
T 3nks_A 153 R-----------LGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALA 221 (477)
T ss_dssp H-----------HCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHH
T ss_pred h-----------hCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcc
Confidence 3 3344555554443 35677777776654432100 0
Q ss_pred ccCCccccccchHHHHHHHhc-----cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhhhccCcccccC
Q 011202 217 LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEP 290 (491)
Q Consensus 217 ~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~ 290 (491)
...+.+.+.+|++.++++|++ |++|+++++|++|+.++++ +.|+++ ++++.||+||+|+|+..+.+++.
T Consensus 222 ~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~~~~~ll~---- 296 (477)
T 3nks_A 222 ERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPASVLSELLP---- 296 (477)
T ss_dssp TTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHHHHHHHSC----
T ss_pred cCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHHHHHHhcc----
Confidence 012356788999999988865 7899999999999988777 888764 44899999999999988765432
Q ss_pred CCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCC---cce-eeecc-----cccCCceEEEEEeccchhH
Q 011202 291 RLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY---GCS-YFLNL-----HKATGHCVLVYMPAGQLAR 361 (491)
Q Consensus 291 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~-----~~~~~~~~l~~~~~~~~~~ 361 (491)
.+++...+.+..+++.+..++.+.|++++|+...+ |++.+... ... .|.+. ..+++..++++++.+....
T Consensus 297 ~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~ 375 (477)
T 3nks_A 297 AEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGF-GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQ 375 (477)
T ss_dssp GGGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSS-EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHH
T ss_pred ccCHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCc-eEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcccc
Confidence 23345667888899988899999999999975544 66554321 112 22221 1133567777777766555
Q ss_pred Hhh----cCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCCCCCCh---hhHHHhcCCcCcEEEecc
Q 011202 362 DIE----KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DLYERLRIPVDNLFFAGE 434 (491)
Q Consensus 362 ~~~----~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~~~~~~~p~~~l~~aG~ 434 (491)
.+. .++++++++.++++|+++++...+|....+++|... +....+++.. .....+....+||++||+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a------~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~ 449 (477)
T 3nks_A 376 TLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNC------IPQYTLGHWQKLESARQFLTAHRLPLTLAGA 449 (477)
T ss_dssp HHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEE------EECCBTTHHHHHHHHHHHHHHTTCSEEECST
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCc------cCCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 443 468999999999999999976667888888999641 1111233321 111222223469999999
Q ss_pred ccCCCCCccchHHHHHHHHHHHHHHH
Q 011202 435 ATSMSYPGSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 435 ~~~~~~~g~~egA~~sg~~aA~~i~~ 460 (491)
++. +.++++|+.||+.||++|+.
T Consensus 450 ~~~---G~gv~~a~~sg~~aA~~il~ 472 (477)
T 3nks_A 450 SYE---GVAVNDCIESGRQAAVSVLG 472 (477)
T ss_dssp TTS---CCSHHHHHHHHHHHHHHHHH
T ss_pred CCC---CCcHHHHHHHHHHHHHHHHh
Confidence 973 34799999999999998875
No 21
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=100.00 E-value=1.7e-34 Score=294.85 Aligned_cols=401 Identities=13% Similarity=0.107 Sum_probs=247.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCCCCcceeeec-CCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
+++||+|||||++||+||++|+| .|++|+||||++++||+++|. ..+|+.+|.|+|+|+. ....+.+++++++...
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~--~~~~v~~l~~e~~~~~ 86 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS--HYKYFDDCLDEALPKE 86 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCC--CBHHHHHHHHHHSCSG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecC--CCHHHHHHHHHhCCcc
Confidence 46899999999999999999998 599999999999999999984 6689999999999974 3567889999987542
Q ss_pred ---eeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhh
Q 011202 105 ---YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLE 181 (491)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (491)
........+.+.+....+++ .......+.... ......+.............+.++.+|+...
T Consensus 87 ~~~~~~~~~~~i~~~g~~~~~p~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---------- 152 (513)
T 4gde_A 87 DDWYTHQRISYVRCQGQWVPYPF-QNNISMLPKEEQ---VKCIDGMIDAALEARVANTKPKTFDEWIVRM---------- 152 (513)
T ss_dssp GGEEEEECCEEEEETTEEEESSG-GGGGGGSCHHHH---HHHHHHHHHHHHHHHTCCSCCCSHHHHHHHH----------
T ss_pred ceeEEecCceEEEECCeEeecch-hhhhhhcchhhH---HHHHHHHHHHHHhhhcccccccCHHHHHHHh----------
Confidence 22222222222221111110 001111122111 1122222222333334455667888887543
Q ss_pred hhHHHHHHHHHHhh-hhhhcCCccccchhcccccc---------------------cc-cCCccccccchHHHHHHHhc-
Q 011202 182 GLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------------------LL-PGGHGLMVRGYLPVINTLAK- 237 (491)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------------------~~-~~~~~~~~~G~~~l~~~l~~- 237 (491)
+.+.+.+.++.++ ...++.+++.++........ .. ....+.+.+|++.++++|++
T Consensus 153 -~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~ 231 (513)
T 4gde_A 153 -MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANT 231 (513)
T ss_dssp -HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHT
T ss_pred -hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHH
Confidence 4445555555553 35666777766654322100 00 01112357999999999965
Q ss_pred ----cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEE
Q 011202 238 ----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIM 313 (491)
Q Consensus 238 ----gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~ 313 (491)
|++|+++++|++|..++++ +++.+|+++.||+||+|+|++.+..++. ++........++|.+...+.+
T Consensus 232 l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~l~------~~~~~~~~~~l~y~~~~~v~l 303 (513)
T 4gde_A 232 LPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVDFLAEAMN------DQELVGLTKQLFYSSTHVIGV 303 (513)
T ss_dssp SCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHHHHHHHTT------CHHHHHHHTTCCEEEEEEEEE
T ss_pred HHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHHHHHHhcC------chhhHhhhhcccCCceEEEEE
Confidence 6789999999999987765 4678999999999999999998765432 234455667888888888888
Q ss_pred EecCCCCCCC-cccee-ecCCCCc---cee--------------------eecc----cccCCceEEEEEeccchhHHhh
Q 011202 314 HFDKVFWPNV-EFLGV-VSDTSYG---CSY--------------------FLNL----HKATGHCVLVYMPAGQLARDIE 364 (491)
Q Consensus 314 ~~~~~~~~~~-~~~g~-~~~~~~~---~~~--------------------~~~~----~~~~~~~~l~~~~~~~~~~~~~ 364 (491)
.++.....+. ..... +.+.... ... +.+. ..+.+...+.++..+...+...
T Consensus 304 ~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
T 4gde_A 304 GVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMK 383 (513)
T ss_dssp EEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTB
T ss_pred EEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhcc
Confidence 8765432111 00011 1111000 000 1100 0011122233333333344567
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCC--CcEEEecccCCCCCCCcccccCCCCC---ChhhHHHhcCCcCcEEEeccccCCC
Q 011202 365 KMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGK---SHDLYERLRIPVDNLFFAGEATSMS 439 (491)
Q Consensus 365 ~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~---~~~~~~~~~~p~~~l~~aG~~~~~~ 439 (491)
.++++++++.++++|.++.+.... +...++.+|... ++.| ..+. ....++.+.. +|||+||....+.
T Consensus 384 ~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~a---yP~y---~~~~~~~~~~~~~~l~~--~~l~~~GR~g~~~ 455 (513)
T 4gde_A 384 PVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHG---YPTP---TLEREGTLTQILPKLQD--KDIWSRGRFGSWR 455 (513)
T ss_dssp CCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEE---EECC---BTTHHHHHHHHHHHHHH--TTEEECSTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCe---eccc---CHhHHHHHHHHHHHHhh--cCcEEecCCcccC
Confidence 789999999999999999865433 356667777531 1112 1222 1233344443 5999999988877
Q ss_pred CC-ccchHHHHHHHHHHHHHHH
Q 011202 440 YP-GSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 440 ~~-g~~egA~~sg~~aA~~i~~ 460 (491)
|. ++|++|+.+|++||++|+.
T Consensus 456 Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 456 YEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHc
Confidence 65 6899999999999999885
No 22
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-33 Score=277.36 Aligned_cols=386 Identities=16% Similarity=0.127 Sum_probs=239.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCee--e
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--R 106 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~ 106 (491)
+||+|||||++||+||+.|+++|++|+|+||++++||++++...+|+.+|.|++++.+......+.++++++++... .
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN 80 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence 58999999999999999999999999999999999999999999999999998776644345678999999998632 2
Q ss_pred ccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhhhhHHH
Q 011202 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHK 186 (491)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (491)
......+.+.+.. .. +......+.... ...+..+....... .....+.++.+++... ++..+
T Consensus 81 ~~~~~~~~~~g~~--~~-~~~~~~~l~~~~----~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~~----------g~~~~ 142 (421)
T 3nrn_A 81 SNPKGKILWEGKI--FH-YRESWKFLSVKE----KAKALKLLAEIRMN-KLPKEEIPADEWIKEK----------IGENE 142 (421)
T ss_dssp CSSSCEEEETTEE--EE-GGGGGGGCC------------CCHHHHHTT-CCCCCCSBHHHHHHHH----------TCCCH
T ss_pred CCCCeEEEECCEE--EE-cCCchhhCCHhH----HHHHHHHHHHHHhc-cCCCCCCCHHHHHHHh----------cCCcH
Confidence 2211111111110 00 000000011100 01111111111110 1122346788877543 13333
Q ss_pred HHHHHHHhh-hhhhcCCccccchhccc---ccccccCCccccccchHHHHHHHhc-----cCCeecCceeEEEEecCCcE
Q 011202 187 VLQWYLCRM-EGWFAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV 257 (491)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~~~v 257 (491)
.++.++.++ ...++.++..+++.... ......++..++.+|++.++++|++ |++|+++++|++|..+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v 222 (421)
T 3nrn_A 143 FLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKKV 222 (421)
T ss_dssp HHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE
T ss_pred HHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE
Confidence 444444443 33456666666653222 1112245677899999998888864 88999999999999988888
Q ss_pred EEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCC-c-
Q 011202 258 KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY-G- 335 (491)
Q Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~-~- 335 (491)
| +.+|+++.||.||+|++++.+.+++. .+.+|+...+.+.++.+.+..++++.++++..+... ++..... .
T Consensus 223 -V-~~~g~~~~ad~Vv~a~~~~~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~---~~~~~~~~~~ 295 (421)
T 3nrn_A 223 -Y-TRDNEEYSFDVAISNVGVRETVKLIG--RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNT---IVFTPGLMIN 295 (421)
T ss_dssp -E-ETTCCEEECSEEEECSCHHHHHHHHC--GGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSSCSS---EEECTTSSSC
T ss_pred -E-EeCCcEEEeCEEEECCCHHHHHHhcC--cccCCHHHHHHHhCCCCCceEEEEEEEcCCcccCCe---EEEcCCccee
Confidence 6 56777999999999999988765332 134566677788889888888999999987544322 2211111 1
Q ss_pred cee----eecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccCCCCCCCcccccCC
Q 011202 336 CSY----FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDT 411 (491)
Q Consensus 336 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~ 411 (491)
... ......|+|...+.+.... ...+++|.++.++++|++++| ......+++|...-.. +. ..
T Consensus 296 ~i~~~s~~~p~~ap~G~~~~~~~~~~------~~~~~~~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~---~~-~~ 362 (421)
T 3nrn_A 296 GFNEPSALDKSLAREGYTLIMAHMAL------KNGNVKKAIEKGWEELLEIFP---EGEPLLAQVYRDGNPV---NR-TR 362 (421)
T ss_dssp EEECGGGTCGGGSCTTEEEEEEEEEC------TTCCHHHHHHHHHHHHHHHCT---TCEEEEEEEC--------------
T ss_pred eEeccCCCCCCcCCCCceEEEEEEee------ccccHHHHHHHHHHHHHHHcC---CCeEEEeeeccCCCCc---cc-cc
Confidence 011 1112235666665554321 223345669999999999999 3344456777542111 10 01
Q ss_pred CCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHH
Q 011202 412 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 458 (491)
Q Consensus 412 ~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i 458 (491)
++. + .+ .+| +|||+|||++...++..||||+.||.+||+.|
T Consensus 363 ~~~--~-~~--~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 363 AGL--H-IE--WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp -----C-CC--CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCC--C-CC--CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 111 1 12 567 99999999996532225599999999999976
No 23
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=100.00 E-value=9.3e-32 Score=270.54 Aligned_cols=401 Identities=14% Similarity=0.133 Sum_probs=252.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCcceeeec-CCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
+++||+|||||++||+||+.|+++| .+|+|+|+++++||+++|. ..+|+.+|.|++++.. ....+.++++++..+.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~l~~~~~~~~ 85 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS--HYQYFDDVMDWAVQGW 85 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC--SBHHHHHHHHHHCSCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc--ChHHHHHHHHHHhhhh
Confidence 5689999999999999999999998 7999999999999999994 7889999999999863 3456788888875333
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhhhhH
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLA 184 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (491)
........+.+++....+++ ......++..... ..+..++.. +......++.++.+|+... ++
T Consensus 86 ~~~~~~~~~~~~g~~~~~P~-~~~~~~l~~~~~~---~~~~~ll~~--~~~~~~~~~~s~~e~~~~~-----------~g 148 (484)
T 4dsg_A 86 NVLQRESWVWVRGRWVPYPF-QNNIHRLPEQDRK---RCLDELVRS--HARTYTEPPNNFEESFTRQ-----------FG 148 (484)
T ss_dssp EEEECCCEEEETTEEEESSG-GGCGGGSCHHHHH---HHHHHHHHH--HHCCCSSCCSSHHHHHHHH-----------HH
T ss_pred hhccCceEEEECCEEEEeCc-cchhhhCCHHHHH---HHHHHHHHH--HhccCCCCCCCHHHHHHHH-----------hH
Confidence 22222222222221111110 0111112222111 111222221 1122334678999987544 33
Q ss_pred HHHHHHHHHhh-hhhhcCCccccchhccccccc---------------------ccCCcccc-ccchHHHHHHHhccC--
Q 011202 185 HKVLQWYLCRM-EGWFAADAETISLKSWDKEEL---------------------LPGGHGLM-VRGYLPVINTLAKGL-- 239 (491)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~---------------------~~~~~~~~-~~G~~~l~~~l~~gv-- 239 (491)
..+.+.++.++ .+.++.+++.++......... ..+.+.++ .+|++.++++|++.+
T Consensus 149 ~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~ 228 (484)
T 4dsg_A 149 EGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPS 228 (484)
T ss_dssp HHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhhh
Confidence 44444444443 357777787777643221100 01112234 489999999998865
Q ss_pred -CeecC--ceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEec
Q 011202 240 -DIRLG--HRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 316 (491)
Q Consensus 240 -~i~~~--~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 316 (491)
+|+++ ++|++|..++++| ++.+|+++.||+||+|+|++.+.+++....+.+++...+.+..++|.+..++.+.|+
T Consensus 229 ~~i~~~~~~~V~~I~~~~~~v--~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~ 306 (484)
T 4dsg_A 229 EKLTFNSGFQAIAIDADAKTI--TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVK 306 (484)
T ss_dssp GGEEECGGGCEEEEETTTTEE--EETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEE
T ss_pred CeEEECCCceeEEEEecCCEE--EECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEc
Confidence 79999 5699999887765 457888899999999999998876543333456777888899999999999999998
Q ss_pred CCCCCC-CccceeecCCCC-c---ceeeec---ccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCC-
Q 011202 317 KVFWPN-VEFLGVVSDTSY-G---CSYFLN---LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS- 387 (491)
Q Consensus 317 ~~~~~~-~~~~g~~~~~~~-~---~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~- 387 (491)
.+...+ ....++..++.. . ...+.+ ...|++.++++..+... .....+++|+++.+.++|.++..-.+
T Consensus 307 ~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~---~~~~~~d~~l~~~a~~~L~~~~~~~~~ 383 (484)
T 4dsg_A 307 GTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES---KYKPVNHSTLIEDCIVGCLASNLLLPE 383 (484)
T ss_dssp SCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB---TTBCCCTTSHHHHHHHHHHHTTSCCTT
T ss_pred CCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC---cCCcCCHHHHHHHHHHHHHHcCCCCcc
Confidence 763221 122344333321 1 112222 12345566655554332 34567899999999999999863222
Q ss_pred CC-cEEEecccCCCCCCCcccccCCCCCC---hhhHHHhcCCcCcEEEeccccCCCCC-ccchHHHHHHHHHHHHHH
Q 011202 388 SP-IQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYP-GSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 388 ~~-~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~-g~~egA~~sg~~aA~~i~ 459 (491)
++ ...++.+|.. +|-...+++. ....+.+.. . ||+++|+...+.|. .+|+.|+.||+.||++|+
T Consensus 384 ~~~~~~~v~r~~~------~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 384 DLLVSKWHYRIEK------GYPTPFIGRNNLLEKAQPELMS-R-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp CCEEEEEEEEEEE------EEECCBTTHHHHHHHHHHHHHH-T-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEEEeCc------cccCCCccHHHHHHHHHHHHHh-C-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence 23 2345677753 2211123321 122333333 3 99999998777543 479999999999999887
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.97 E-value=3e-29 Score=249.59 Aligned_cols=392 Identities=16% Similarity=0.143 Sum_probs=224.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
.+++||+|||||++||+||+.|+++| ++|+|+|+++++||+++|...+|+.+|.|++++.. ....+.++++++|+..
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~--~~~~~~~l~~~~g~~~ 81 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP--SYDTIQEIMDRTGDKV 81 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT--TCHHHHHHHHHHCCCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC--CcHHHHHHHHHhCCcc
Confidence 35789999999999999999999999 89999999999999999988899999999998853 3467889999999875
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhc-----------CCCCCCHHHHHHHHHc
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE-----------HDEDMSIQRAISIVFD 173 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 173 (491)
........+.+... .. ...... +.. .......+.++.......... .....++.+|+....
T Consensus 82 ~~~~~~~~~~~~~g-~~---~~~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~- 153 (424)
T 2b9w_A 82 DGPKLRREFLHEDG-EI---YVPEKD--PVR-GPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNG- 153 (424)
T ss_dssp CSCCCCEEEECTTS-CE---ECGGGC--TTH-HHHHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTT-
T ss_pred ccccccceeEcCCC-CE---eccccC--ccc-chhHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhC-
Confidence 33221111111111 00 000000 010 111111222222221111000 011356777665331
Q ss_pred cChhhhhhhhHHHHHHHHHHhhhh-hhcCCccccchhccc---c----cccccCCccccccchHHHHHHHhc--cCCeec
Q 011202 174 RRPELRLEGLAHKVLQWYLCRMEG-WFAADAETISLKSWD---K----EELLPGGHGLMVRGYLPVINTLAK--GLDIRL 243 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~---~----~~~~~~~~~~~~~G~~~l~~~l~~--gv~i~~ 243 (491)
+. .+.+.+..++.. .++ ++...++..+. . .....++.+.+.+|++.+++++.+ +.++++
T Consensus 154 ---------~~-~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~v~~ 222 (424)
T 2b9w_A 154 ---------CE-AARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLEHPAER 222 (424)
T ss_dssp ---------CG-GGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTCCBCCTTCHHHHHHHHHHHSSSCCBC
T ss_pred ---------cH-HHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCceEEeCChHHHHHHHHHHhhcceEEc
Confidence 11 122333333322 222 33344432211 1 011234556788999999999987 447999
Q ss_pred CceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCC
Q 011202 244 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV 323 (491)
Q Consensus 244 ~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 323 (491)
+++|++|+.+++++.|++.+| ++.||+||+|+|+..+..+ .+.+++. .+.+..+.+.+.. +.+.+...+ +.
T Consensus 223 ~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~----l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~- 293 (424)
T 2b9w_A 223 NVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDY----SDADDDE-REYFSKIIHQQYM-VDACLVKEY-PT- 293 (424)
T ss_dssp SCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTS----BCCCHHH-HHHHTTCEEEEEE-EEEEEESSC-CS-
T ss_pred CCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhc----cCCCHHH-HHHHhcCCcceeE-EEEEEeccC-Cc-
Confidence 999999999888888888888 5999999999999876443 2333332 3345555554322 222233222 11
Q ss_pred ccceeecCC----CCcceeeecccccCC-ceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecccC
Q 011202 324 EFLGVVSDT----SYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWG 398 (491)
Q Consensus 324 ~~~g~~~~~----~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~ 398 (491)
+.+.+... ......+.....+.+ ..++++|..+. ...+...+++++++.++++|+++.+.. +.......|.
T Consensus 294 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~v~~~l~~l~~~~--~~~~~~~~w~ 369 (424)
T 2b9w_A 294 -ISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRN-HPDYADKTQEECRQMVLDDMETFGHPV--EKIIEEQTWY 369 (424)
T ss_dssp -SEEECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECC-BTTBCCCCHHHHHHHHHHHHHHTTCCE--EEEEEEEEEE
T ss_pred -ccccccCCCCCcCCCcceEEeeecCCCCceEEEEEeccC-CCcccccChHHHHHHHHHHHHHcCCcc--ccccccccee
Confidence 11222211 000012221111222 34555555432 345667789999999999999965421 1112233554
Q ss_pred CCCCCC-cccccCCCCCChhhHHHhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHH
Q 011202 399 TDANSL-GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 459 (491)
Q Consensus 399 ~~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~ 459 (491)
..+... ..+ ..|. .....-.++.+||||||+++. .|++|+|+.||.+||+.++
T Consensus 370 ~~p~~~~~~~---~~G~--~~~~~~~~~~~~l~~aG~~~~---~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 370 YFPHVSSEDY---KAGW--YEKVEGMQGRRNTFYAGEIMS---FGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp EEEECCHHHH---HTTH--HHHHHHTTTGGGEEECSGGGS---CSSHHHHHHHHHHHHHHHT
T ss_pred eeeccCHHHH---hccH--HHHHHHHhCCCCceEeccccc---cccHHHHHHHHHHHHHHhc
Confidence 211100 001 0111 112223456689999999874 5799999999999999764
No 25
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.96 E-value=3.6e-27 Score=227.15 Aligned_cols=320 Identities=16% Similarity=0.179 Sum_probs=212.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCeeec
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (491)
++||+|||||++||++|+.|++.|.+|+||||++.+||++.+....+..+|.|..++... ...+.++++.+...
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---- 75 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTAR--DRRFATAVKQWQAQ---- 75 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCC--SHHHHHHHHHHHHH----
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecC--CHHHHHHHHHHHhC----
Confidence 579999999999999999999999999999999999999998777778888877765411 11122222211100
Q ss_pred cCCCcccccCCCcceeeecCCCCccChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhhhhhhHHHH
Q 011202 108 SGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV 187 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (491)
.
T Consensus 76 -----------------------------------------------~-------------------------------- 76 (336)
T 1yvv_A 76 -----------------------------------------------G-------------------------------- 76 (336)
T ss_dssp -----------------------------------------------T--------------------------------
T ss_pred -----------------------------------------------C--------------------------------
Confidence 0
Q ss_pred HHHHHHhhhhhhcCCccccchhcccccccccCCccccccchHHHHHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEE
Q 011202 188 LQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTF 267 (491)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~ 267 (491)
....+ ...........+.. .......+....|+..+.+.+.+|++|+++++|++|+.++++|.|++.+|+.+
T Consensus 77 ------~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 148 (336)
T 1yvv_A 77 ------HVAEW-TPLLYNFHAGRLSP-SPDEQVRWVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEHWNLLDAEGQNH 148 (336)
T ss_dssp ------SEEEE-CCCEEEESSSBCCC-CCTTSCEEEESSCTHHHHHHHHTTCCEECSCCEEEEEECSSCEEEEETTSCEE
T ss_pred ------Ceeec-cccceeccCccccc-CCCCCccEEcCccHHHHHHHHHccCcEEecCEEEEEEEeCCEEEEEeCCCcCc
Confidence 00000 00000000000000 00001122345688999999999999999999999999988999999999766
Q ss_pred E-cCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCcceeeecccccC
Q 011202 268 V-ADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKAT 346 (491)
Q Consensus 268 ~-ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (491)
. +|.||+|+|+..+.+++. + . +.....+..+.|.+..++.+.|+.++|.... +....+......+.+...|.
T Consensus 149 ~~a~~vV~a~g~~~~~~~~~-~---~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~p~ 221 (336)
T 1yvv_A 149 GPFSHVIIATPAPQASTLLA-A---A-PKLASVVAGVKMDPTWAVALAFETPLQTPMQ--GCFVQDSPLDWLARNRSKPE 221 (336)
T ss_dssp EEESEEEECSCHHHHGGGGT-T---C-HHHHHHHTTCCEEEEEEEEEEESSCCSCCCC--EEEECSSSEEEEEEGGGSTT
T ss_pred cccCEEEEcCCHHHHHHhhc-c---C-HHHHHHHhhcCccceeEEEEEecCCCCCCCC--eEEeCCCceeEEEecCcCCC
Confidence 4 999999999988765432 1 2 3345677888888888999999998876432 33333322222333322222
Q ss_pred --Cc-eEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEecccCCCCCCCcccccCCCCCChhhHHHh
Q 011202 347 --GH-CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL 422 (491)
Q Consensus 347 --~~-~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~ 422 (491)
+. ..++.+..+..+..+..++++++.+.+.+.|.++++. ...|.....++|... .+.+. .+. +.+
T Consensus 222 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~~a---~~~~~---~~~-----~~~ 290 (336)
T 1yvv_A 222 RDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYA---RPAGA---HEW-----GAL 290 (336)
T ss_dssp CCCSSEEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEE---EESSC---CCC-----SCE
T ss_pred CCCCCcEEEEEeCHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEccccCcc---CCCCC---CCC-----Cee
Confidence 11 3456666556667778899999999999999999974 445677778888631 11111 111 112
Q ss_pred cCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 011202 423 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 461 (491)
Q Consensus 423 ~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~ 461 (491)
..+.++|++|||++. ++++++|+.||..+|+.|.+.
T Consensus 291 ~~~~~rl~laGDa~~---g~gv~~a~~sg~~lA~~l~~~ 326 (336)
T 1yvv_A 291 SDADLGIYVCGDWCL---SGRVEGAWLSGQEAARRLLEH 326 (336)
T ss_dssp EETTTTEEECCGGGT---TSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEecCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 234589999999984 469999999999999987665
No 26
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.93 E-value=9.4e-26 Score=221.43 Aligned_cols=248 Identities=15% Similarity=0.175 Sum_probs=155.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCcceeeecCC--CCceee-cccceeeCCCCCCcHHHHHHHc
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYS--FGFPVD-LGASWLHGVCQENPLAPVISRL 100 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~--~g~~~d-~G~~~~~~~~~~~~~~~l~~~l 100 (491)
|..++||+|||||++||+||+.|+++ |++|+|+|+++++||+++|... +|+.+| .|+++++. ....+.++++++
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~~ 81 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT--SNKRVWDYVRQF 81 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHTTT
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC--CcHHHHHHHHHh
Confidence 44578999999999999999999999 9999999999999999999776 688885 99999984 356789999999
Q ss_pred CCCeeeccCCCcccccCCCcceeeecCCCCccChH--HHHHHHHH---HHHHHHHHHHhhh--cCCCCCCHHHHHHHHHc
Q 011202 101 GLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQE--LVTKVGEA---FESILKETDKVRE--EHDEDMSIQRAISIVFD 173 (491)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 173 (491)
++- ........+.+++. ...+|.. ....+... ...+...+..... ...++.++.+|+..
T Consensus 82 g~~-~~~~~~~~~~~~G~----------~~~~p~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~e~l~~--- 147 (399)
T 1v0j_A 82 TDF-TDYRHRVFAMHNGQ----------AYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEIDTADAQNLEEKAIS--- 147 (399)
T ss_dssp CCB-CCCCCCEEEEETTE----------EEEESSSHHHHHHHHTSCCCHHHHHHHHHHHGGGSCTTC----CCHHHH---
T ss_pred hhh-hccccceEEEECCE----------EEeCCCCHHHHHHHhcccCCHHHHHHHHHHHhhccCCCCcccHHHHHHH---
Confidence 872 11111111111111 0111111 01111000 0011111111111 12345567666543
Q ss_pred cChhhhhhhhHHHHHHHHHHhhh-hhhcCCccccchhccccc---cc-----ccCCc-cccccchHHHHHHHhc--cCCe
Q 011202 174 RRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKE---EL-----LPGGH-GLMVRGYLPVINTLAK--GLDI 241 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~---~~-----~~~~~-~~~~~G~~~l~~~l~~--gv~i 241 (491)
.+++.+.+.++.++. ..++.+++.+++...... .. ....+ +++.+|+++++++|++ |++|
T Consensus 148 --------~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~g~~I 219 (399)
T 1v0j_A 148 --------LIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADHRIEV 219 (399)
T ss_dssp --------HHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCSTTEEE
T ss_pred --------HHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhcCCeEE
Confidence 345556666666644 577788888876554211 11 11123 3889999999999987 5689
Q ss_pred ecCceeEEEEecCCcEEEEEcCCcEE-EcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCC
Q 011202 242 RLGHRVTKITRHYIGVKVTVEGGKTF-VADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 320 (491)
Q Consensus 242 ~~~~~V~~I~~~~~~v~v~~~~g~~~-~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (491)
+++++|++|..+ | + ++ .||+||+|+|++.+..+ .+..++|.+...+.+.++.+.+
T Consensus 220 ~l~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~--------------~l~~l~y~s~~~~~~~~~~~~~ 275 (399)
T 1v0j_A 220 RLNTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY--------------AEGRLGWRTLDFEVEVLPIGDF 275 (399)
T ss_dssp ECSCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCS
T ss_pred EECCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh--------------hhCCCCcceEEEEEEEEccccC
Confidence 999999999642 2 1 35 79999999999887543 1245667666677777776543
No 27
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.92 E-value=2.9e-24 Score=208.24 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=160.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceee-cccceeeCCCCCCcHHHHHHHcCCCeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD-LGASWLHGVCQENPLAPVISRLGLPLYR 106 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d-~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (491)
++||+|||||++||+||+.|+++|++|+|+|+++++||++++...+|+.+| .|+++++.. ...+.+++++++... +
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~--~~~~~~~~~~l~~~~-~ 77 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTN--DKYIWDYVNDLVEFN-R 77 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEES--CHHHHHHHHTTSCBC-C
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCC--CHHHHHHHHHhhhhh-h
Confidence 369999999999999999999999999999999999999999877899996 999998843 356788888887522 1
Q ss_pred ccCCCcccccCCCcceeeecCCCCccChH--HHHHH-----HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHccChhhh
Q 011202 107 TSGDNSVLYDHDLESYALFDMDGNQVPQE--LVTKV-----GEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR 179 (491)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (491)
........+.+. ...+|.. ....+ ...+.+++....... ...++.++.+|+..
T Consensus 78 ~~~~~~~~~~g~----------~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~s~~~~~~~--------- 137 (367)
T 1i8t_A 78 FTNSPLAIYKDK----------LFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKY-GDKVPENLEEQAIS--------- 137 (367)
T ss_dssp CCCCCEEEETTE----------EEESSBSHHHHHHHHCCCCHHHHHHHHHHHTTTT-CCCCCCSHHHHHHH---------
T ss_pred ccccceEEECCe----------EEEcCCCHHHHHHHhccCCHHHHHHHHHHHhhcc-CCCCCccHHHHHHH---------
Confidence 111111111111 0111111 11111 111122222221111 12356788888643
Q ss_pred hhhhHHHHHHHHHHhhh-hhhcCCccccchhccccc--------ccccCCc-cccccchHHHHHHHhccCCeecCceeEE
Q 011202 180 LEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKE--------ELLPGGH-GLMVRGYLPVINTLAKGLDIRLGHRVTK 249 (491)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~--------~~~~~~~-~~~~~G~~~l~~~l~~gv~i~~~~~V~~ 249 (491)
.+.+.+.+.++.++. ..++.+++++++..+... ....+.+ +++.+|+++++++|++|++|+++++|.+
T Consensus 138 --~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~g~~i~l~~~V~~ 215 (367)
T 1i8t_A 138 --LVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLK 215 (367)
T ss_dssp --HHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTTSEEECSCCGGG
T ss_pred --HHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhcCCEEEeCCceee
Confidence 255667777776654 577888888876544211 0112223 3899999999999999999999999998
Q ss_pred EEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCC
Q 011202 250 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 321 (491)
Q Consensus 250 I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 321 (491)
|.. +| .+.+|+||+|+|++.+..+ .+..++|.+...+.+.++.+.++
T Consensus 216 i~~---~v--------~~~~D~VV~a~p~~~~~~~--------------~l~~l~y~s~~~v~~~~d~~~~~ 262 (367)
T 1i8t_A 216 DKD---SL--------ASKAHRIIYTGPIDQYFDY--------------RFGALEYRSLKFETERHEFPNFQ 262 (367)
T ss_dssp SHH---HH--------HTTEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCSS
T ss_pred ech---hh--------hccCCEEEEeccHHHHHHH--------------hhCCCCCceEEEEEEEeccccCC
Confidence 852 12 2469999999999876432 13456776666777788876554
No 28
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.91 E-value=3.6e-23 Score=201.70 Aligned_cols=233 Identities=12% Similarity=0.251 Sum_probs=153.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCC--CCcee-ecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFPV-DLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
++||+|||||++||++|+.|+++|++|+|+|+++++||+++|... .|+.+ |.|+++++. .+..+.+++++++..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~l~~~- 79 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT--DNETVWNYVNKHAEM- 79 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHHTTSCE-
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECC--CCHHHHHHHHHHhhh-
Confidence 479999999999999999999999999999999999999999766 78876 899999984 356788999999862
Q ss_pred eeccCCCcccccCCCcceeeecCCCCccChHH--HHHH------HHHHHHHHHHHHHhhhc-CCCCCCHHHHHHHHHccC
Q 011202 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQEL--VTKV------GEAFESILKETDKVREE-HDEDMSIQRAISIVFDRR 175 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (491)
.+......+.+++.. . .+|... ...+ ...+.+++. ..... ..++.++.+|+...
T Consensus 80 ~~~~~~~~~~~~g~~--~--------~~P~~~~~~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~sl~e~~~~~---- 142 (384)
T 2bi7_A 80 MPYVNRVKATVNGQV--F--------SLPINLHTINQFFSKTCSPDEARALIA---EKGDSTIADPQTFEEEALRF---- 142 (384)
T ss_dssp EECCCCEEEEETTEE--E--------EESCCHHHHHHHTTCCCCHHHHHHHHH---HHSCCSCSSCCBHHHHHHHH----
T ss_pred cccccceEEEECCEE--E--------ECCCChhHHHHHhcccCCHHHHHHHHH---HhhhccCCCCcCHHHHHHHh----
Confidence 221111111111110 0 111110 0000 011111111 11111 23567888886433
Q ss_pred hhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccc--------cccccCCc-cccccchHHHHHHHhc--cCCeec
Q 011202 176 PELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--------EELLPGGH-GLMVRGYLPVINTLAK--GLDIRL 243 (491)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--------~~~~~~~~-~~~~~G~~~l~~~l~~--gv~i~~ 243 (491)
+++.+.+.++.++ ...++.+++.++...... .....+.+ +++.+|+++++++|++ |++|++
T Consensus 143 -------~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~g~~I~l 215 (384)
T 2bi7_A 143 -------IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHENIKVDL 215 (384)
T ss_dssp -------HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCSTTEEEEE
T ss_pred -------hcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhcCCCEEEE
Confidence 4456666666664 467888888887664421 11122333 3899999999999987 678999
Q ss_pred CceeE-EEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEec
Q 011202 244 GHRVT-KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 316 (491)
Q Consensus 244 ~~~V~-~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 316 (491)
+++|. +|.. .+|+||+|+|++.+..+ .+..++|.+...+.+.+|
T Consensus 216 ~~~V~~~i~~---------------~~d~VI~a~p~~~~~~~--------------~lg~l~y~s~~~v~~~~d 260 (384)
T 2bi7_A 216 QREFIVEERT---------------HYDHVFYSGPLDAFYGY--------------QYGRLGYRTLDFKKFTYQ 260 (384)
T ss_dssp SCCCCGGGGG---------------GSSEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEEE
T ss_pred CCeeehhhhc---------------cCCEEEEcCCHHHHHHh--------------hcCCCCcceEEEEEEEeC
Confidence 99999 7742 29999999999987543 134566766666677776
No 29
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.90 E-value=3.1e-22 Score=193.70 Aligned_cols=244 Identities=14% Similarity=0.193 Sum_probs=162.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC-CCCcee-ecccceeeCCCCCCcHHHHHHHcCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPV-DLGASWLHGVCQENPLAPVISRLGL 102 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~-d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (491)
+...+||+|||||++||+||+.|+++|++|+|+|+++++||++++.. ..|+.+ |.|+|+++. ....+.+++++++.
T Consensus 26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~--~~~~~~~~~~~~~~ 103 (397)
T 3hdq_A 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHT--NSKDVFEYLSRFTE 103 (397)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEE--SCHHHHHHHHTSCC
T ss_pred cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCC--ChHHHHHHHHHhhh
Confidence 34678999999999999999999999999999999999999999865 678865 999999873 35678999999985
Q ss_pred CeeeccCCCcccccCCCcceeeecCCCCccChHH--HHHHH------HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHcc
Q 011202 103 PLYRTSGDNSVLYDHDLESYALFDMDGNQVPQEL--VTKVG------EAFESILKETDKVREEHDEDMSIQRAISIVFDR 174 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (491)
.. +......+.+++.. ..+|... ...+. .....++. .......++.++++|+..
T Consensus 104 ~~-~~~~~~~~~~~g~l----------~~lP~~~~~~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~s~~e~~~~---- 165 (397)
T 3hdq_A 104 WR-PYQHRVLASVDGQL----------LPIPINLDTVNRLYGLNLTSFQVEEFFA---SVAEKVEQVRTSEDVVVS---- 165 (397)
T ss_dssp EE-ECCCBEEEEETTEE----------EEESCCHHHHHHHHTCCCCHHHHHHHHH---HHCCCCSSCCBHHHHHHH----
T ss_pred cc-cccccceEEECCEE----------EEcCCChHHHHHhhccCCCHHHHHHHHh---hcccCCCCCcCHHHHHHH----
Confidence 21 11111111111111 1111111 11110 11111111 112234567899998754
Q ss_pred ChhhhhhhhHHHHHHHHHHhh-hhhhcCCccccchhcccccc--------cccCCc-cccccchHHHHHHHhc--cCCee
Q 011202 175 RPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE--------LLPGGH-GLMVRGYLPVINTLAK--GLDIR 242 (491)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~--------~~~~~~-~~~~~G~~~l~~~l~~--gv~i~ 242 (491)
.++..+.+.++.++ .+.++.+++.+++..+.... ...+.+ ++|.+|+.+++++|++ |++|+
T Consensus 166 -------~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~g~~V~ 238 (397)
T 3hdq_A 166 -------KVGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSPNIKVM 238 (397)
T ss_dssp -------HHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCSTTEEEE
T ss_pred -------hcCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhccCCEEE
Confidence 35556677776665 46889999999876543211 111222 3699999999999987 88999
Q ss_pred cCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCC
Q 011202 243 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN 322 (491)
Q Consensus 243 ~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 322 (491)
++++|.++ +.++.+|+||+|+|++.+... ....++|.+...+.+.++...+.+
T Consensus 239 l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~~~--------------~~g~L~yrsl~~~~~~~~~~~~~~ 291 (397)
T 3hdq_A 239 LNTDYREI-------------ADFIPFQHMIYTGPVDAFFDF--------------CYGKLPYRSLEFRHETHDTEQLLP 291 (397)
T ss_dssp ESCCGGGT-------------TTTSCEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCSCS
T ss_pred ECCeEEec-------------cccccCCEEEEcCCHHHHHHH--------------hcCCCCCceEEEEEEEeccccCCC
Confidence 99999733 335679999999999876321 134566767777777888655443
No 30
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.86 E-value=4.3e-21 Score=191.57 Aligned_cols=242 Identities=13% Similarity=0.111 Sum_probs=137.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCC-ce---------------eecccceeeCCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG-FP---------------VDLGASWLHGVC 88 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g-~~---------------~d~G~~~~~~~~ 88 (491)
+...+||+|||||++||+||+.|+++|++|+|+||++++||+++|...+| +. ++.|.++.....
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~ 87 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI 87 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence 44578999999999999999999999999999999999999999966544 21 445545443221
Q ss_pred -----CCCcHHHHHHHcCCCeee--ccCCCcccccCCCcceeeecCC-CCccChHH-HHHHHHHHHHHHHHHHHhhhc--
Q 011202 89 -----QENPLAPVISRLGLPLYR--TSGDNSVLYDHDLESYALFDMD-GNQVPQEL-VTKVGEAFESILKETDKVREE-- 157 (491)
Q Consensus 89 -----~~~~~~~l~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 157 (491)
....+.++++++|+.... ...+..+.+... ..+. +... ...+...+ .......+.+++..+.+....
T Consensus 88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g-~~~~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p 165 (453)
T 2bcg_G 88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQG-KIYK-VPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDL 165 (453)
T ss_dssp CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETT-EEEE-CCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBG
T ss_pred cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCC-eEEE-CCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCc
Confidence 345788999999974210 011111111111 0000 0000 00000000 000123344555554443211
Q ss_pred ------CCCCCCHHHHHHHHHccChhhhhhhhHHHHHHHHHHhhhh----hhcCCccccch---hcccc--cccccCCcc
Q 011202 158 ------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG----WFAADAETISL---KSWDK--EELLPGGHG 222 (491)
Q Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~---~~~~~--~~~~~~~~~ 222 (491)
.....++.+++..+. ..+.+.+.+...+.. .+...+...++ ..+.. .....+.+.
T Consensus 166 ~~~~~~~~~~~s~~~~l~~~~----------~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~ 235 (453)
T 2bcg_G 166 STHQGLDLDKNTMDEVYYKFG----------LGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYL 235 (453)
T ss_dssp GGSTTCCTTTSBHHHHHHHTT----------CCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEE
T ss_pred hhhhccccccCCHHHHHHHhC----------CCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhhcCCceE
Confidence 124567777765432 222332222111110 11112222222 11100 011124455
Q ss_pred ccccchHHHHHHHhc-----cCCeecCceeEEEEec--CCcE-EEEEcCCcEEEcCEEEEecchh
Q 011202 223 LMVRGYLPVINTLAK-----GLDIRLGHRVTKITRH--YIGV-KVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 223 ~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
++.+|++.++++|++ |++|+++++|++|..+ ++++ .|.+ +|+++.||+||+|+++.
T Consensus 236 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 236 YPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF 299 (453)
T ss_dssp EETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred eeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence 889999999888853 8899999999999987 7775 5655 57789999999999875
No 31
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.83 E-value=1.3e-18 Score=163.13 Aligned_cols=59 Identities=32% Similarity=0.549 Sum_probs=54.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceeecccceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~ 85 (491)
|++||+|||||++||+||+.|+++|++|+||||++.+||++++....+..+|.|..++.
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~ 59 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT 59 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccc
Confidence 56899999999999999999999999999999999999999998888999999887664
No 32
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.81 E-value=6.6e-19 Score=174.60 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=143.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecC-C--------------------CCceeecccce
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-S--------------------FGFPVDLGASW 83 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~--------------------~g~~~d~G~~~ 83 (491)
|.+++||+|||||++||++|+.|+++|++|+|+|+++.+||+++|.. . .++.+|.|+++
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~ 82 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF 82 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence 45678999999999999999999999999999999999999999976 1 34778888887
Q ss_pred eeCCCCCCcHHHHHHHcCCCeee--ccCCCcccccCCCcceeeecCCCCccChHHHH---------HHHHHHHHHHHHHH
Q 011202 84 LHGVCQENPLAPVISRLGLPLYR--TSGDNSVLYDHDLESYALFDMDGNQVPQELVT---------KVGEAFESILKETD 152 (491)
Q Consensus 84 ~~~~~~~~~~~~l~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 152 (491)
+.. ...+.++++++|+.... ...+..+.+... ..+ .++..... .....+.+++..+.
T Consensus 83 l~~---~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g-~~~--------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (433)
T 1d5t_A 83 LMA---NGQLVKMLLYTEVTRYLDFKVVEGSFVYKGG-KIY--------KVPSTETEALASNLMGMFEKRRFRKFLVFVA 150 (433)
T ss_dssp EET---TSHHHHHHHHHTGGGGCCEEECCEEEEEETT-EEE--------ECCCSHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred eec---cchHHHHHHHcCCccceEEEEeCceEEeeCC-EEE--------ECCCCHHHHhhCcccChhhHHHHHHHHHHHH
Confidence 763 35788999999975210 111111111111 000 11111000 01223445555544
Q ss_pred Hhhhc--------CCCCCCHHHHHHHHHccChhhhhhhhHHHHHHHHHHhhhhhhcCCccccch----h---cccc--cc
Q 011202 153 KVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISL----K---SWDK--EE 215 (491)
Q Consensus 153 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~---~~~~--~~ 215 (491)
++... .....++.+++.+++ ..+.+.+.+...+..+.+..+...+. . .+.. ..
T Consensus 151 ~~~~~~p~~~~~~~~~~~s~~~~l~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~ 220 (433)
T 1d5t_A 151 NFDENDPKTFEGVDPQNTSMRDVYRKFD----------LGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLAR 220 (433)
T ss_dssp HCCTTCGGGGTTCCTTTSBHHHHHHHTT----------CCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCS
T ss_pred hhcccCchhccccccccCCHHHHHHHcC----------CCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHh
Confidence 43211 124567887775432 22333332222211111112211111 1 1111 01
Q ss_pred cccCCccccccchHHHHHHHhc-----cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 216 LLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 216 ~~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
...+...++.+|++.++++|.+ |++|+++++|++|..+++++.+...+|+++.||+||+|+++..
T Consensus 221 ~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~ 290 (433)
T 1d5t_A 221 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP 290 (433)
T ss_dssp SSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred cCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence 1123356899999999888853 8899999999999998888754445788899999999998764
No 33
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.79 E-value=1.2e-18 Score=171.73 Aligned_cols=241 Identities=11% Similarity=0.113 Sum_probs=144.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCC--------------------Cceeeccccee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--------------------GFPVDLGASWL 84 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~ 84 (491)
+.+.+||+|||||++|+++|+.|++.|++|+|+||++.+||++.+.... +|.+|++++.+
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l 96 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI 96 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence 4567899999999999999999999999999999999999999886421 47899998877
Q ss_pred eCCCCCCcHHHHHHHcCCCeee--ccCCCccccc-CCC----cceeeec--CC-CCccC-hHHHHHHHHHHHHHHHHHHH
Q 011202 85 HGVCQENPLAPVISRLGLPLYR--TSGDNSVLYD-HDL----ESYALFD--MD-GNQVP-QELVTKVGEAFESILKETDK 153 (491)
Q Consensus 85 ~~~~~~~~~~~l~~~lg~~~~~--~~~~~~~~~~-~~~----~~~~~~~--~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (491)
. ....+.+++.++++...- ......+.+. ... .....+. .. ...+. ..+....+..+.+++..+.+
T Consensus 97 ~---~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~ 173 (475)
T 3p1w_A 97 L---VGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSE 173 (475)
T ss_dssp E---TTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHH
T ss_pred e---cCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHh
Confidence 5 456889999998886321 1111111111 000 0000000 00 00000 00001122334555555554
Q ss_pred hhhc--------CCCCCCHHHHHHHHHccChhhhhhhhHHHHHHHHHHhhhhhhcCCccccchhc-------cc--cccc
Q 011202 154 VREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKS-------WD--KEEL 216 (491)
Q Consensus 154 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-------~~--~~~~ 216 (491)
+... ...+.++.+|++.+ ++.+.+.+.+...++.....+....++.. +. ....
T Consensus 174 ~~~~~~~~~~~~~l~~~s~~e~l~~~----------gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y 243 (475)
T 3p1w_A 174 WDANKRNTWDNLDPYKLTMLEIYKHF----------NLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF 243 (475)
T ss_dssp CCTTCGGGSTTCCTTTSBHHHHHHHT----------TCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhhcccccCCCHHHHHHHc----------CCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc
Confidence 3211 12456888887543 44455554432322211111111112111 10 0011
Q ss_pred ccCCccccccchHHHHHHHhc-----cCCeecCceeEEEEe-cCCc-EEEEEcCCcEEEcCEEEEecch
Q 011202 217 LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITR-HYIG-VKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 217 ~~~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~-~~~~-v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
......++.+|+..++++|.+ |++|+++++|++|.. ++++ +.|.+.+|+++.||+||+++..
T Consensus 244 g~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~ 312 (475)
T 3p1w_A 244 GKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY 312 (475)
T ss_dssp SSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred CCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence 234567899999999888854 899999999999998 6666 5788989988999999999864
No 34
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.77 E-value=2.6e-18 Score=164.78 Aligned_cols=80 Identities=30% Similarity=0.429 Sum_probs=70.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCcceeeecC----------CCCceeecccceeeCCCCCCcH
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRVHTDY----------SFGFPVDLGASWLHGVCQENPL 93 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~-~~~GG~~~s~~----------~~g~~~d~G~~~~~~~~~~~~~ 93 (491)
+...+||+|||||++||+||+.|+++|++|+|||++ +++||++.|.. ..++.+|.|+++++. ....+
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~--~~~~~ 118 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS--FHPLT 118 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET--TCHHH
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc--hHHHH
Confidence 345789999999999999999999999999999999 99999999876 357899999999874 34568
Q ss_pred HHHHHHcCCCeee
Q 011202 94 APVISRLGLPLYR 106 (491)
Q Consensus 94 ~~l~~~lg~~~~~ 106 (491)
.++++++|+....
T Consensus 119 ~~~~~~lGl~~~~ 131 (376)
T 2e1m_A 119 LALIDKLGLKRRL 131 (376)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHHcCCCcce
Confidence 8999999997644
No 35
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.64 E-value=3.6e-16 Score=134.35 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=100.1
Q ss_pred CCc-eEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhC-CCCCCCc-EE--EecccCCCCCCCcccccCCCCCChhhHH
Q 011202 346 TGH-CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPI-QY--LVSHWGTDANSLGSYSYDTVGKSHDLYE 420 (491)
Q Consensus 346 ~~~-~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~-p~~~~~~-~~--~~~~w~~~~~~~g~~~~~~~~~~~~~~~ 420 (491)
.+. .+|+.++.++.+..+..++++++++.++++|+++| |.. .+. .+ ..++|..++++.|+|++..+|+.....+
T Consensus 33 ~g~~~~L~~~~~g~~A~~~~~l~~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~ 111 (181)
T 2e1m_C 33 TQGGVVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRI-EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHL 111 (181)
T ss_dssp CSCEEEEEEEEEHHHHHHHTTSCTTTTHHHHHHHHHHHHCGGG-GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHH
T ss_pred CCCCEEEEEEcCChHHHHHHcCCHHHHHHHHHHHHHHHhCCCc-HhhccCcceecccCCCCCCCCcccCcCCCchHHHHH
Confidence 344 57778888888888999999999999999999999 555 444 67 8899999999999998777887666678
Q ss_pred HhcCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHHHH
Q 011202 421 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 462 (491)
Q Consensus 421 ~~~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~~l 462 (491)
.+++|.++|||||++++. +.||||||+.||.+||++|++.+
T Consensus 112 ~l~~p~grl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l 152 (181)
T 2e1m_C 112 DVVRPEGPVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAP 152 (181)
T ss_dssp HHHSCBTTEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCcEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999996 89999999999999999988764
No 36
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.47 E-value=2e-12 Score=125.43 Aligned_cols=44 Identities=34% Similarity=0.553 Sum_probs=38.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
++++||+|||||++||++|+.|+++|++|+|+||++.+|+.+..
T Consensus 2 ~~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~ 45 (369)
T 3dme_A 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSS 45 (369)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCc
Confidence 35689999999999999999999999999999998777765544
No 37
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.46 E-value=4e-12 Score=124.56 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
+|||+|||||++||+||+.|+++|++|+|+||++.+|.
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~ 41 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 58999999999999999999999999999999888774
No 38
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.45 E-value=2.2e-12 Score=130.89 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCccccccchHHHHHHHhc-----cCCeecCceeEEEEecC--CcE-EEEEcCCcEEEcCEEEEe
Q 011202 219 GGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHY--IGV-KVTVEGGKTFVADAVVVA 275 (491)
Q Consensus 219 ~~~~~~~~G~~~l~~~l~~-----gv~i~~~~~V~~I~~~~--~~v-~v~~~~g~~~~ad~VI~a 275 (491)
+++.++.+|++.|.++|.+ |++++++++|.+|..++ +++ .|.+.+|+++.||+||++
T Consensus 368 sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~ 432 (650)
T 1vg0_A 368 TPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 432 (650)
T ss_dssp SSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred CceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence 5788999999999998853 89999999999999877 565 566678999999999984
No 39
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.41 E-value=6.2e-12 Score=122.59 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.+.+.+.+ |++|+++++|++|+.+++++.|++.+| ++.||+||+|+..+.
T Consensus 159 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 159 GYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence 34444433 899999999999999888888988888 899999999998754
No 40
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.39 E-value=1.2e-11 Score=126.25 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
.++||+|||||++||++|+.|++.|.+|+||||++.++
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~ 41 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS 41 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 46899999999999999999999999999999987654
No 41
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.37 E-value=1.7e-11 Score=120.67 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=42.4
Q ss_pred HHHHHhccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|.+.+.+ ++|+++++|++|+.+++++.|++.+|+++.+|.||.|...+..
T Consensus 133 L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 182 (407)
T 3rp8_A 133 MLDYWGR-DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSA 182 (407)
T ss_dssp HHHHHCG-GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred HHHhCCc-CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence 4444444 7999999999999999999999999999999999999887643
No 42
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.36 E-value=3.7e-11 Score=117.16 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=40.0
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEE-EEEcCCcEEEcCEEEEecchhh
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
+.+.+. .|++++++++|++|+.+++++. |.+.+| ++.||.||+|+..+.
T Consensus 155 l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 155 FAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 444443 3899999999999999888876 888777 899999999998753
No 43
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.35 E-value=1e-11 Score=121.15 Aligned_cols=187 Identities=13% Similarity=0.070 Sum_probs=97.1
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCccc
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIEN 309 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (491)
+.+.+. .|++++++++|++|+.+++++.|.+.+| ++.||.||+|+...... +...+.. .++..+..
T Consensus 170 l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~-l~~~~~~-----------~~~~~~~~ 236 (382)
T 1ryi_A 170 YVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGM-FFKQLGL-----------NNAFLPVK 236 (382)
T ss_dssp HHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHH-HHHHTTC-----------CCCCEEEE
T ss_pred HHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHH-HHHhcCC-----------CCceeccc
Confidence 444443 3899999999999999888888888777 89999999999875310 0000000 11121222
Q ss_pred EEEEEecCC--CCCCCccceeecCCCCcceeeecccccCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHhCCCCC
Q 011202 310 KIIMHFDKV--FWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS 387 (491)
Q Consensus 310 ~v~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~ 387 (491)
...+.++.+ .++ ..+... ..++.. ..+..+++..+. . ...+....+++..+.+++.+.+++|.+.
T Consensus 237 g~~~~~~~~~~~~~-----~~~~~~---~~~~~p---~~~g~~~vG~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~p~l~ 303 (382)
T 1ryi_A 237 GECLSVWNDDIPLT-----KTLYHD---HCYIVP---RKSGRLVVGATM-K-PGDWSETPDLGGLESVMKKAKTMLPAIQ 303 (382)
T ss_dssp EEEEEEECCSSCCC-----SEEEET---TEEEEE---CTTSEEEEECCC-E-ETCCCCSCCHHHHHHHHHHHHHHCGGGG
T ss_pred eEEEEECCCCCCcc-----ceEEcC---CEEEEE---cCCCeEEEeecc-c-ccCCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 222333322 111 111111 112211 112233332221 1 1123333456678889999999999765
Q ss_pred CCcEEEecccCCCCCCCcccccCCCCCChhhHHHh--cCCcCcEEEeccccCCCCCccchHHHHHHHHHHHHHHH
Q 011202 388 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL--RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 460 (491)
Q Consensus 388 ~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~--~~p~~~l~~aG~~~~~~~~g~~egA~~sg~~aA~~i~~ 460 (491)
.. . ....|. |.... .++.. |.+ ....+|+|+++-.. ..++.-|..+|..+|+.|..
T Consensus 304 ~~-~-~~~~w~------g~~~~-t~d~~----p~ig~~~~~~~l~~~~G~~----g~G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 304 NM-K-VDRFWA------GLRPG-TKDGK----PYIGRHPEDSRILFAAGHF----RNGILLAPATGALISDLIMN 361 (382)
T ss_dssp GS-E-EEEEEE------EEEEE-CSSSC----CEEEEETTEEEEEEEECCS----SCTTTTHHHHHHHHHHHHTT
T ss_pred CC-c-eeeEEE------Eeccc-CCCCC----cEeccCCCcCCEEEEEcCC----cchHHHhHHHHHHHHHHHhC
Confidence 32 2 233442 11111 11110 111 01246999887543 22566788889999887653
No 44
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.34 E-value=8.3e-12 Score=130.82 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=43.3
Q ss_pred HHHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 229 LPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 229 ~~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
..+.+.+.+ |++|+++++|++|..++++|.|.+.+|+++.||.||+|+....
T Consensus 421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 421 RNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence 334444433 8999999999999999989999998887899999999998764
No 45
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.33 E-value=8.1e-11 Score=118.49 Aligned_cols=42 Identities=36% Similarity=0.411 Sum_probs=36.4
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 23 KGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 23 ~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
....+++||+|||||++||++|+.|+++|++|+|+||.+.++
T Consensus 6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~ 47 (500)
T 2qa1_A 6 HHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT 47 (500)
T ss_dssp --CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred CCccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 335678999999999999999999999999999999987664
No 46
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.33 E-value=4e-11 Score=122.37 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCcEEEEE--cCC-cEEEcCEEEEecchhh
Q 011202 231 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV--EGG-KTFVADAVVVAVPLGV 280 (491)
Q Consensus 231 l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~--~~g-~~~~ad~VI~a~p~~~ 280 (491)
|.+.+.+ |++|+++++|++|+.+++++.|++ .+| ++++||.||.|...+.
T Consensus 154 L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 154 LAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp HHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 3334433 889999999999999888888877 678 6899999999988654
No 47
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.33 E-value=1.9e-11 Score=121.46 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=42.9
Q ss_pred HHHHHHHh-ccCCeecCc---eeEEEEecCCcEE-EEEcCCcEEEcCEEEEecchhh
Q 011202 229 LPVINTLA-KGLDIRLGH---RVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 229 ~~l~~~l~-~gv~i~~~~---~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
..+.+.+. .|++|++++ +|++|..+++++. |.+.+|+++.||.||+|+..+.
T Consensus 165 ~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 165 VAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 33444443 389999999 9999999888876 9999998899999999998764
No 48
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.32 E-value=1.9e-10 Score=115.75 Aligned_cols=44 Identities=27% Similarity=0.220 Sum_probs=38.7
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCc---EEEcCEEEEecchhhh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGK---TFVADAVVVAVPLGVL 281 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~---~~~ad~VI~a~p~~~l 281 (491)
|++|+++++|++|+.+++++.|++.+++ +++||.||.|...+..
T Consensus 121 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 121 GAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp TCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 8899999999999998888888887775 7999999999887654
No 49
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.32 E-value=1.2e-11 Score=121.24 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=37.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.+++||+|||||++||+||+.|++.|.+|+|+|+++.+|+.+.
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~ 67 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIR 67 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeE
Confidence 3568999999999999999999999999999999999987663
No 50
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.32 E-value=7.7e-11 Score=115.15 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.+.+.+. .|++++++++|++|+.+++++.|.+++| ++.||.||+|+..+.
T Consensus 155 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 205 (389)
T 2gf3_A 155 AYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN 205 (389)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence 3444443 3899999999999999888888888776 799999999998653
No 51
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.31 E-value=6.4e-10 Score=108.93 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=40.5
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchh
Q 011202 229 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 279 (491)
Q Consensus 229 ~~l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 279 (491)
..+.+.+. .|++++++++|++|+.+++++.|.+.+| ++.||.||+|+..+
T Consensus 157 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 157 AALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence 34444443 3899999999999999888888877766 79999999999865
No 52
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.30 E-value=1.9e-10 Score=112.60 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=35.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
++||+|||||++||++|+.|++.|++|+|+|+++.+|+
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~ 41 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 57999999999999999999999999999999887765
No 53
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.29 E-value=2.2e-11 Score=127.73 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=41.8
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCc-EEEcCEEEEecchhh
Q 011202 230 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~ 280 (491)
.+.+.+.+ |++|+++++|++|+.++++|.|.+.+|+ ++.||.||+|+....
T Consensus 417 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 417 ALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred HHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence 34444433 8999999999999999888999998887 899999999998764
No 54
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.28 E-value=1.9e-11 Score=125.08 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
.+||+|||||++||++|+.|++.|++|+|+|+.+.++
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~ 59 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR 59 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC
Confidence 5899999999999999999999999999999976544
No 55
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.28 E-value=6.9e-11 Score=116.82 Aligned_cols=36 Identities=39% Similarity=0.559 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
++||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~ 40 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP 40 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 489999999999999999999999999999997643
No 56
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.22 E-value=1.9e-10 Score=114.64 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
+++||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~ 41 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN 41 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4689999999999999999999999999999998764
No 57
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.21 E-value=2.3e-09 Score=105.40 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=40.4
Q ss_pred HHHHHhc--cCCeecCceeEEEEecC-CcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLAK--GLDIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~~--gv~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|.+.|.+ +..|+++++|++++..+ +++.|+++||++++||.||-|-..+..
T Consensus 114 L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 167 (412)
T 4hb9_A 114 LKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSK 167 (412)
T ss_dssp HHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred HHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcc
Confidence 4444544 34799999999998754 468999999999999999999876553
No 58
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.19 E-value=1.6e-10 Score=117.05 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+++||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~ 41 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF 41 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCC
Confidence 357999999999999999999999999999999764
No 59
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.17 E-value=2e-10 Score=112.47 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=40.5
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
.|++++++++|++|+.+++++.|++.+|+++.+|.||.|...+..
T Consensus 110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 110 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 488999999999999988889999999989999999999887543
No 60
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.17 E-value=1.4e-10 Score=112.68 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=41.4
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhh
Q 011202 229 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 229 ~~l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
..+.+.+. .|++++++++|++|+.+++++.|.+.+| ++.||.||+|+..+.
T Consensus 153 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 153 KTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence 33444443 3899999999999999888888888888 599999999998764
No 61
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.14 E-value=1.1e-10 Score=116.07 Aligned_cols=41 Identities=32% Similarity=0.527 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+++||+|||||++||+||+.|++.|.+|+|+||.+.+|+.+
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~ 65 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL 65 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCcee
Confidence 56899999999999999999999999999999999888754
No 62
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.13 E-value=4.4e-10 Score=110.09 Aligned_cols=44 Identities=14% Similarity=-0.006 Sum_probs=39.2
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecchhhh
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
+++++++++|++|+.+++++.|++.+|+++.||.||.|......
T Consensus 140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 140 NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 46899999999999988889999999988999999999987654
No 63
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.12 E-value=4.4e-10 Score=109.75 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=37.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||+||+.|++.|.+|+|+|+++.+|+...
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~ 44 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence 58999999999999999999999999999999998876553
No 64
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.12 E-value=6.9e-11 Score=116.18 Aligned_cols=50 Identities=22% Similarity=0.133 Sum_probs=39.6
Q ss_pred HHHHHHh-ccCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLA-KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~-~gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.+.+.+. .|++++++++|++|..++++ +.|.+.+| ++.+|.||+|+....
T Consensus 179 ~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 179 AFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 3444443 38999999999999988776 57888888 799999999998653
No 65
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.12 E-value=3.3e-10 Score=115.11 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=44.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCCceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD 78 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d 78 (491)
.+++||+|||||++||++|+.|++.|++|+|+|+++.+||.+......|...|
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~d 71 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCD 71 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCS
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeC
Confidence 35689999999999999999999999999999999999997765444444333
No 66
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=99.11 E-value=4.6e-10 Score=113.51 Aligned_cols=43 Identities=35% Similarity=0.458 Sum_probs=39.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||++||+||+.|++.|.+|+|+||.+.+||.+.
T Consensus 39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~ 81 (510)
T 4at0_A 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA 81 (510)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence 3468999999999999999999999999999999999998753
No 67
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.11 E-value=4e-10 Score=114.81 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=40.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeec
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (491)
...+||+|||||++||++|+.|++.|++|+|+|+++.+||.+...
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~ 58 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN 58 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccc
Confidence 346899999999999999999999999999999999999877543
No 68
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.11 E-value=3.7e-10 Score=115.23 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++|+++|+.|+++|++|+|+||++..+|.+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~ 58 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS 58 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence 468999999999999999999999999999999977666543
No 69
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.11 E-value=1.1e-09 Score=112.25 Aligned_cols=42 Identities=36% Similarity=0.596 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++.|.+|+|+||.+.+||.+.
T Consensus 125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 166 (571)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence 468999999999999999999999999999999999987654
No 70
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.09 E-value=4.7e-10 Score=113.70 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=44.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCCCCcceeeecCCCCceeec
Q 011202 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHTDYSFGFPVDL 79 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~ 79 (491)
+++||+|||||++||++|+.|+ +.|++|+|+|+++.+||.+......+...|.
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~ 60 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDT 60 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecC
Confidence 3579999999999999999999 8999999999999999987655555554443
No 71
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=99.09 E-value=1e-09 Score=112.41 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=38.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|+++|.+|+||||.+.+||.+.
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 161 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 161 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence 568999999999999999999999999999999999887543
No 72
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.08 E-value=3.6e-09 Score=108.46 Aligned_cols=41 Identities=34% Similarity=0.639 Sum_probs=37.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeeCCCCcce
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGR 66 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~------G~~V~vlE~~~~~GG~ 66 (491)
.+.+||+|||||++||++|+.|++. |.+|+|+||.+.+|+.
T Consensus 33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 79 (584)
T 2gmh_A 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH 79 (584)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence 3568999999999999999999998 9999999999888865
No 73
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=99.08 E-value=5.6e-10 Score=106.64 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+++||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 45 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT 45 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence 468999999999999999999999999999999999988664
No 74
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.06 E-value=3.9e-10 Score=113.59 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++.|++|+|+|+.+.++++..
T Consensus 106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~ 147 (549)
T 3nlc_A 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTK 147 (549)
T ss_dssp CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCccccccc
Confidence 458999999999999999999999999999999998887653
No 75
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=99.06 E-value=4.6e-09 Score=107.36 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=35.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.++||+|||||++|+++|+.|++.|++|+|+|+++..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 468999999999999999999999999999999875555
No 76
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.06 E-value=1.5e-08 Score=102.17 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
++||+|||||++|+++|+.|++.|++|+|+||++..+|
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g 40 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA 40 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence 57999999999999999999999999999999764443
No 77
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.05 E-value=9.5e-10 Score=106.19 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=39.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.+++||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 54 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA 54 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence 3468999999999999999999999999999999999998764
No 78
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=99.03 E-value=1e-09 Score=104.10 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=37.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
.+++||+|||||++||+||+.|++.|++|+|+|++ +||.+..
T Consensus 13 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~ 54 (323)
T 3f8d_A 13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE 54 (323)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred CCccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence 45689999999999999999999999999999997 8876653
No 79
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.02 E-value=5.4e-10 Score=109.54 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=42.9
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCcE--EEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLAK--GLDIRLGHRVTKITRHYIGV--KVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~~--gv~i~~~~~V~~I~~~~~~v--~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.|.+.+.+ |++++++++|++|+.+++++ .|++.+|+++.+|.||.|...+.
T Consensus 112 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 112 LVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS 166 (399)
T ss_dssp HHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred HHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence 34555554 78999999999999988888 89999998999999999998654
No 80
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.01 E-value=1.8e-09 Score=103.88 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~ 43 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ 43 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 47999999999999999999999999999999999998765
No 81
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.01 E-value=8.8e-10 Score=102.49 Aligned_cols=41 Identities=32% Similarity=0.551 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~GG~~ 67 (491)
.++||+|||||++||++|+.|++. |.+|+|+|+++.+||.+
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~ 79 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA 79 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence 457999999999999999999997 99999999999888743
No 82
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.00 E-value=2.8e-09 Score=106.06 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~~~GG~~~s 69 (491)
.+.+||+|||||++||++|..|++.|. +|+|||+++.+||.+..
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~ 49 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 49 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence 356899999999999999999999999 99999999999986643
No 83
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=99.00 E-value=9.9e-10 Score=104.67 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~ 47 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS 47 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence 57999999999999999999999999999999999998764
No 84
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.00 E-value=1e-09 Score=111.42 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=41.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeeecCCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g 74 (491)
+++||+|||||++||++|+.|++.|++|+|+|+++.+||.+......+
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg 55 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPG 55 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTT
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCc
Confidence 467999999999999999999999999999999999998765433333
No 85
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.00 E-value=1e-09 Score=117.66 Aligned_cols=50 Identities=26% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHHHHHh-ccCCeecCceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecchhh
Q 011202 230 PVINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV 280 (491)
Q Consensus 230 ~l~~~l~-~gv~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~ 280 (491)
.+.+.+. .|++|+++++|++|+.+++++ .|.+.+| ++.||.||+|+..+.
T Consensus 156 ~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 156 LLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 3444443 389999999999999988775 6778777 799999999998754
No 86
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=99.00 E-value=7.7e-09 Score=107.32 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE~~~~~G 64 (491)
.++||+|||||++||++|+.|++ .|.+|+|+||.+.++
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~ 69 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM 69 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 45799999999999999999999 999999999987553
No 87
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.93 E-value=2.5e-09 Score=102.12 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC----CCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD----RVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~----~~GG~~~ 68 (491)
..+++||+|||||++||++|+.|++.|++|+|+|+.+ .+||.+.
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~ 66 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLT 66 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccc
Confidence 3467899999999999999999999999999999944 6666543
No 88
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.93 E-value=1.1e-09 Score=107.10 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=39.8
Q ss_pred HHHHHh-ccCCeecCceeEEEEecC-CcEEEEE-cCCc--EEEcCEEEEecchhhh
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHY-IGVKVTV-EGGK--TFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~-~~v~v~~-~~g~--~~~ad~VI~a~p~~~l 281 (491)
+.+.+. .|++++++++|++|+.++ +++.|++ .+|+ ++.+|.||.|...+..
T Consensus 109 L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 109 LMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI 164 (394)
T ss_dssp HHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred HHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 444443 389999999999999864 5677776 7886 7999999999987654
No 89
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.92 E-value=4.8e-09 Score=99.07 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
|+..+||+|||||++||+||.+|++.|++|+|+|+.. .||.
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~ 41 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGV 41 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCc
Confidence 4567999999999999999999999999999999954 4543
No 90
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.92 E-value=3.4e-09 Score=104.18 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~~~G 64 (491)
+.+||+|||||++||++|+.|++.|.+ |+|+|+.+.++
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~ 41 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence 468999999999999999999999999 99999987664
No 91
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.92 E-value=3.8e-09 Score=99.21 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||++|+.|+++ |++|+|+|+.+.+||.+.
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~ 121 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW 121 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence 468999999999999999999997 999999999998887554
No 92
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.92 E-value=6.4e-10 Score=110.81 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~~GG 65 (491)
+++||+|||||++|+++|+.|+++| .+|+|+|++..+|+
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~ 61 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS 61 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCC
Confidence 4679999999999999999999999 99999999555554
No 93
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.91 E-value=5.7e-11 Score=94.32 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=66.9
Q ss_pred cEEEcCEEEEecchhhhccCcccccCCCchHHHHHHhhcCCCcccEEEEEecCCCCCCCccceeecCCCCcceeeecccc
Q 011202 265 KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 344 (491)
Q Consensus 265 ~~~~ad~VI~a~p~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (491)
++++||+||+|+|+..+. .+.|.|.||+...+++..++++..+|+++.|+++||++....|. +...
T Consensus 4 ~~~~Ad~VIvTvP~~vL~--~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~~~gd------------~s~~ 69 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLR--FVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEADWK------------RELD 69 (130)
T ss_dssp EEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCHHHHH------------HHHH
T ss_pred eEEEcCEEEEcCCHHHHh--cCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCCcccc------------ccCC
Confidence 478999999999999987 46789999999999999999999999999999999987643221 1001
Q ss_pred cCCceEEEEEe-ccchhHHhhcCCHHHHHHHHHHHHHHhCCCCC
Q 011202 345 ATGHCVLVYMP-AGQLARDIEKMSDEAAANFAFTQLKKILPDAS 387 (491)
Q Consensus 345 ~~~~~~l~~~~-~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~ 387 (491)
+...+++++++ +++.+.+|..+++ |.++.+...|.+++|++.
T Consensus 70 ~~~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~ 112 (130)
T 2e1m_B 70 AIAPGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD 112 (130)
T ss_dssp HHSTTHHHHHHHHCCCSCCCC-----------------------
T ss_pred CCCCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence 11223566677 4888888888865 788899999999999765
No 94
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.91 E-value=4.2e-09 Score=102.42 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=35.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
.+||+|||||++||++|+.|++.|.+|+|+|+++.+++
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~ 48 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA 48 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence 57999999999999999999999999999999887653
No 95
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.89 E-value=3.5e-09 Score=107.96 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+||+|||||++||++|+.|++.|.+|+|+||.+.++
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 45799999999999999999999999999999988665
No 96
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.89 E-value=7.9e-09 Score=105.80 Aligned_cols=42 Identities=43% Similarity=0.632 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 166 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchh
Confidence 467999999999999999999999999999999999988654
No 97
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.88 E-value=1.2e-08 Score=96.30 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||+||+.|++.|+ +|+|+|+ ..+||.+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~-~~~gg~~~ 41 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEK-GMPGGQIT 41 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECS-SSTTCGGG
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcC-CCCCcccc
Confidence 3799999999999999999999999 9999999 46777554
No 98
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.86 E-value=3.9e-08 Score=98.76 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=41.0
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|.+|+.+++++.|.+.+|+++.+|.||+|++.
T Consensus 238 l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 238 LNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp HHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 444444 389999999999999988888899999989999999999874
No 99
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.85 E-value=1.2e-08 Score=96.94 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=37.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||++||++|+.|++.|++|+|+|++ .+||.+.
T Consensus 6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~ 47 (325)
T 2q7v_A 6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIA 47 (325)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence 34689999999999999999999999999999997 7887654
No 100
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.6e-09 Score=102.96 Aligned_cols=69 Identities=28% Similarity=0.437 Sum_probs=51.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeeCCCCcceeeecCCCCceeecccceeeCCCCCCcHHHHHHHcCCCe
Q 011202 27 RSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (491)
..+||+|||||++||+||++|++ .|++|+||||++.+||.+... ++.+. ...+ ...+..+++++|++.
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~---~~~~~--~~~l-----~~~~~~~~~e~Gv~~ 133 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG---GQLFS--AMVM-----RKPAHLFLQELEIPY 133 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC---STTCC--CEEE-----ETTTHHHHHHTTCCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeC---CccCC--HHHH-----HHHHHHHHHHcCCEE
Confidence 46799999999999999999975 599999999999999987631 11111 0111 234567888888874
Q ss_pred e
Q 011202 105 Y 105 (491)
Q Consensus 105 ~ 105 (491)
.
T Consensus 134 ~ 134 (326)
T 3fpz_A 134 E 134 (326)
T ss_dssp E
T ss_pred E
Confidence 3
No 101
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.82 E-value=2.9e-08 Score=89.20 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++||+|||||++||.+|+.|++.|.+|+|+|++.
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~ 36 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL 36 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 35899999999999999999999999999999974
No 102
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.82 E-value=1e-08 Score=99.16 Aligned_cols=40 Identities=38% Similarity=0.583 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||++|+.|++.|+ +|+|+|+++ +||.+.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~ 44 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK 44 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence 5799999999999999999999999 999999988 888554
No 103
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.82 E-value=8.8e-09 Score=103.53 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=36.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
...+||+|||||++||++|..|++.|++|+|+|+++.+|+
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~ 129 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR 129 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence 3578999999999999999999999999999999888764
No 104
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.82 E-value=2.8e-08 Score=85.51 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=35.1
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++ +|++|+.+++++.|.+++| ++.+|.||+|+..
T Consensus 70 gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~ 108 (180)
T 2ywl_A 70 GAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHK 108 (180)
T ss_dssp TCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTT
T ss_pred CCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCC
Confidence 7899999 9999998877888888888 8999999999875
No 105
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.81 E-value=3.2e-08 Score=92.53 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
|++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 36 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 358999999999999999999999999999999653
No 106
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.81 E-value=1.5e-08 Score=94.67 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~ 68 (491)
.+||+|||||++||+||+.|++. |++|+|+|+++.+||.+.
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~ 107 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence 45999999999999999999998 999999999999987544
No 107
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.80 E-value=5.8e-08 Score=95.50 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=39.8
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|++|+.+++++ .|.+++|+++.+|.||+|+..
T Consensus 200 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~ 249 (415)
T 3lxd_A 200 YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI 249 (415)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred HHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 333343 399999999999999887776 788999999999999999874
No 108
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.79 E-value=2e-08 Score=100.09 Aligned_cols=42 Identities=26% Similarity=0.489 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCc---EEEEeeCCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHD---ASFK---VVLLESRDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~---~G~~---V~vlE~~~~~GG~~~s 69 (491)
.+||+|||||++||+||..|++ .|.+ |+|||+++.+||.+..
T Consensus 2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~ 49 (464)
T 2xve_A 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY 49 (464)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence 4699999999999999999999 9999 9999999999987754
No 109
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.79 E-value=1.1e-07 Score=98.24 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=36.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.+||+|||||++||+||+.|++.|.+|+|+||....+|.+
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s 44 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS 44 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 5799999999999999999999999999999987665543
No 110
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.78 E-value=9.7e-08 Score=99.27 Aligned_cols=35 Identities=37% Similarity=0.649 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHD-----ASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~-----~G~~V~vlE~~~~ 62 (491)
++||+|||||++||++|..|++ .|++|+||||.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 5799999999999999999999 9999999999764
No 111
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.77 E-value=8.2e-08 Score=98.33 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=36.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
.+||+|||||++||+||+.|+++|.+|+|+||.+..||.+
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s 46 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT 46 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999988776543
No 112
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.76 E-value=2.3e-08 Score=99.53 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 230 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 230 ~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.+.+.+.+ |++++++++|++|+..++++.|.+++| ++.+|.||+|++.
T Consensus 194 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~ 242 (452)
T 3oc4_A 194 EVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL 242 (452)
T ss_dssp HHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC
Confidence 34444543 899999999999998777887888777 8999999999864
No 113
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.76 E-value=2.5e-08 Score=94.37 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=36.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+++||+|||||++||++|+.|++.|++|+|+|+ ..+||.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~ 43 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQL 43 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceE
Confidence 468999999999999999999999999999997 5677754
No 114
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=3.5e-08 Score=94.07 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=36.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+.+++||+|||||++||++|+.|++.|++|+|+|+. .+||.+
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~ 52 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL 52 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Confidence 346789999999999999999999999999999984 677654
No 115
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.75 E-value=1.5e-07 Score=96.51 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
..+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~ 56 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSH 56 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4579999999999999999999999999999998766654
No 116
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.75 E-value=3.3e-08 Score=93.29 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=37.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEE-EeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVL-LESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~v-lE~~~~~GG~~~ 68 (491)
.++||+|||||++||+||+.|++.|++|+| +|+ +.+||.+.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~ 44 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQIT 44 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGG
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceee
Confidence 568999999999999999999999999999 999 77888754
No 117
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.74 E-value=5.7e-09 Score=98.56 Aligned_cols=44 Identities=34% Similarity=0.522 Sum_probs=37.5
Q ss_pred CCCC-CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 24 GQAR-SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 24 ~~~~-~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+|++ +|||+|||||++||+||.+|++.|++|+|+|+ +.+||.|.
T Consensus 1 ~Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~ 45 (312)
T 4gcm_A 1 GMTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMA 45 (312)
T ss_dssp ---CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGG
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeee
Confidence 3553 69999999999999999999999999999999 67888764
No 118
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.70 E-value=3.7e-08 Score=93.81 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEee----CCCCcce
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES----RDRVGGR 66 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~----~~~~GG~ 66 (491)
++||+|||||++||++|+.|++.|++|+|+|+ ...+||.
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~ 50 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ 50 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce
Confidence 47999999999999999999999999999998 3445544
No 119
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.67 E-value=1.3e-07 Score=95.81 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=36.6
Q ss_pred cCCeecCceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecchhhh
Q 011202 238 GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|++++++ +|++|+.++++ +.|++.+|+++.+|.||.|+..+..
T Consensus 187 gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 187 GVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp TCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred CCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 8999999 99999986554 6788888888999999999987653
No 120
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.66 E-value=8.6e-08 Score=93.89 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=39.6
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|.+|+.+++++ .|.+.+|+++.+|.||+|+..
T Consensus 190 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 190 FHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 333343 399999999999999877775 688999999999999999875
No 121
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.66 E-value=3.5e-08 Score=99.88 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC-CCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~-~~GG 65 (491)
.++||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~ 65 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ 65 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence 46899999999999999999999999999999974 5553
No 122
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.66 E-value=1e-07 Score=96.67 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
..+||+|||||++||+||+.|++ |.+|+|+||.+..||.+
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s 46 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST 46 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence 35899999999999999999999 99999999988777543
No 123
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.65 E-value=7.3e-08 Score=90.72 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||++|..|++.|++|+|+|+ .+||.+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~ 39 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL 39 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence 47999999999999999999999999999986 4676543
No 124
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.65 E-value=2.1e-07 Score=94.75 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=36.1
Q ss_pred cCCeecCceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecchhhh
Q 011202 238 GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|++++.+ +|++|+.++++ +.|.+.+|+++.+|.||.|+.....
T Consensus 179 gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 179 GVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp TCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred CCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 8999999 89999986554 5788888888999999999987653
No 125
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.65 E-value=1.2e-08 Score=102.24 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=40.2
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|.+|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 208 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 334444 389999999999999877888888889989999999999874
No 126
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.64 E-value=4e-07 Score=93.45 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcce
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR 66 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~ 66 (491)
++||+|||||++||+||+.|++.| .+|+|+||....+|.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~ 45 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence 579999999999999999999999 999999998766653
No 127
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.64 E-value=1.2e-07 Score=94.72 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-----~~V~vlE~~~~~G 64 (491)
.++||+|||||++||++|..|++.| .+|+|||+++.+|
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g 71 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR 71 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence 4569999999999999999999999 9999999999887
No 128
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.63 E-value=9.3e-09 Score=100.10 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=41.6
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 229 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 229 ~~l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
..+.+.+. .|++++++++|.+|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 191 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~ 241 (384)
T 2v3a_A 191 KAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGL 241 (384)
T ss_dssp HHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCC
Confidence 34445554 489999999999999887778888889989999999999874
No 129
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.62 E-value=4.3e-08 Score=99.62 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC-CCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~-~~G 64 (491)
.++||+|||||++|++||+.|++.|.+|+|+|++. .+|
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG 65 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG 65 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence 46899999999999999999999999999999974 444
No 130
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.59 E-value=2.9e-08 Score=93.24 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
+++||+|||||++||+||++|+++|++|+|+|+. .+||.
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~ 43 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNR 43 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGG
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCe
Confidence 4689999999999999999999999999999995 56664
No 131
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.57 E-value=3.1e-07 Score=91.60 Aligned_cols=36 Identities=42% Similarity=0.649 Sum_probs=33.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcce
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (491)
||+|||||++||+||+.|++.|.+|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence 7999999999999999999999999999998 55554
No 132
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.57 E-value=2.4e-07 Score=93.75 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=35.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++.|++|+|+|+ ++||.+.
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~ 250 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL 250 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence 578999999999999999999999999999986 4676543
No 133
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.56 E-value=2e-07 Score=96.01 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=35.1
Q ss_pred cchhhhhhhhhhhccccCCCCCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCc
Q 011202 5 SRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (491)
|.+|-.+.+-...... .+..+++||+|||||++||+||+.|++. |++|+|+|+++.+|
T Consensus 15 ~~~np~~g~e~~~~~~--~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~ 74 (588)
T 3ics_A 15 MTGGQQMGRTLYDDDD--KDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS 74 (588)
T ss_dssp ---------------------CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred cccchhcCccccCccc--CCcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence 4455544444333222 2234568999999999999999999998 89999999988654
No 134
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=98.52 E-value=8e-08 Score=92.69 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
|.+++||+|||||++|+++|+.|+++|++|+|+||....+|
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g 43 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence 45678999999999999999999999999999999764443
No 135
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.52 E-value=2.6e-06 Score=88.18 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHH---H-CCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALH---D-ASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~---~-~G~~V~vlE~~~~ 62 (491)
..+||+|||||++||+||+.|+ + .|.+|+|+||.+.
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 4689999999999999999999 6 8999999999875
No 136
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.51 E-value=1.7e-06 Score=89.45 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~------G~~V~vlE~~~~~G 64 (491)
++||+|||||++||+||+.|+++ |.+|+|+||....+
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~ 64 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER 64 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCC
Confidence 58999999999999999999997 99999999976544
No 137
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.51 E-value=4.3e-07 Score=88.02 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
+.++|+|||||++|++||..|.+.+.+|+|+|+++.++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~ 45 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP 45 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 56789999999999999999977889999999987543
No 138
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.49 E-value=7.3e-08 Score=96.97 Aligned_cols=43 Identities=30% Similarity=0.436 Sum_probs=38.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.+++||+|||||++||+||+.|++.|++|+|+|+++.+||.|.
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~ 65 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL 65 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 3568999999999999999999999999999999999999764
No 139
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=98.48 E-value=5.3e-08 Score=97.25 Aligned_cols=43 Identities=33% Similarity=0.522 Sum_probs=39.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++++||+|||||++||+||..|++.|++|+|+|+++.+||.|.
T Consensus 2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~ 44 (466)
T 3l8k_A 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL 44 (466)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence 3468999999999999999999999999999999899999875
No 140
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.47 E-value=9.9e-08 Score=96.52 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=40.6
Q ss_pred hhhhhhhhccccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--------CCcceee
Q 011202 10 QLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--------RVGGRVH 68 (491)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~--------~~GG~~~ 68 (491)
..++...+......++...+||+|||||++||+||..|++.|++|+|+|+++ .+||.|.
T Consensus 14 ~~~~~~~m~~~~~~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~ 80 (519)
T 3qfa_A 14 LVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV 80 (519)
T ss_dssp ------------CCCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred cccCCCCCCcccccCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence 3455555555555545567899999999999999999999999999999965 6787664
No 141
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.47 E-value=9.1e-08 Score=90.51 Aligned_cols=43 Identities=33% Similarity=0.537 Sum_probs=37.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
|.+++||+|||||++||+||+.|++.|++|+|+|+ ..+||.+.
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~ 55 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA 55 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence 55678999999999999999999999999999999 57787654
No 142
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.46 E-value=5.4e-07 Score=88.38 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~---~G~~V~vlE~~~~ 62 (491)
++||+|||||++||++|+.|++ .|++|+|+|+++.
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~ 38 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 3689999999999999999999 8999999999874
No 143
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.40 E-value=1.4e-07 Score=94.18 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++||+||+.|++.|++|+|+|+ +.+||.|.
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~ 44 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV 44 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence 368999999999999999999999999999999 88999764
No 144
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.38 E-value=1.9e-07 Score=93.28 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 42 (468)
T 2qae_A 1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL 42 (468)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence 357999999999999999999999999999999989999864
No 145
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=98.38 E-value=2.2e-07 Score=91.99 Aligned_cols=42 Identities=43% Similarity=0.574 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++.|++|+|||+.+.+||...
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~ 162 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV 162 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence 568999999999999999999999999999999999998764
No 146
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.37 E-value=2.7e-07 Score=93.47 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=40.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+..++||+|||||++|++||+.|++.|++|+|+|+++.+||.|.
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 83 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP 83 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence 44578999999999999999999999999999999888999864
No 147
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.36 E-value=1e-06 Score=90.29 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (491)
++||+|||||++||+||+.|++. |++|+|+|+++.+|
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~ 39 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS 39 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence 36899999999999999999998 78999999987544
No 148
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.35 E-value=2.7e-07 Score=92.26 Aligned_cols=44 Identities=30% Similarity=0.478 Sum_probs=39.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 3 ~~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (470)
T 1dxl_A 3 GSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL 46 (470)
T ss_dssp -CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence 34578999999999999999999999999999999989998764
No 149
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.34 E-value=2.9e-07 Score=92.17 Aligned_cols=41 Identities=34% Similarity=0.423 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
+++||+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~ 42 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence 57899999999999999999999999999999987555443
No 150
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=98.34 E-value=1.8e-07 Score=89.71 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC------CcEEEEeeCCCCcc
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGG 65 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G------~~V~vlE~~~~~GG 65 (491)
+||+|||||++||++|+.|+++| .+|+|+|+....+|
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~ 43 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT 43 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence 59999999999999999999998 89999999775444
No 151
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.33 E-value=3.3e-07 Score=91.57 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=38.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+.++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~ 43 (467)
T 1zk7_A 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV 43 (467)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence 45789999999999999999999999999999997 7898764
No 152
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.33 E-value=3e-07 Score=91.65 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=38.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 43 (463)
T 2r9z_A 2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV 43 (463)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence 35689999999999999999999999999999996 7898764
No 153
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.32 E-value=2.2e-07 Score=93.19 Aligned_cols=44 Identities=32% Similarity=0.463 Sum_probs=40.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
|..++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 46 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL 46 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence 44568999999999999999999999999999999999998764
No 154
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.31 E-value=1.9e-07 Score=93.63 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 45 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL 45 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence 468999999999999999999999999999999999998764
No 155
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.30 E-value=2.7e-07 Score=91.59 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=37.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+.++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 43 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV 43 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence 34689999999999999999999999999999996 7899764
No 156
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.30 E-value=3e-07 Score=92.00 Aligned_cols=42 Identities=33% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL 46 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence 468999999999999999999999999999999989999764
No 157
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=98.29 E-value=3.6e-07 Score=95.69 Aligned_cols=45 Identities=42% Similarity=0.665 Sum_probs=41.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
....+||+|||||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~ 432 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ 432 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence 346789999999999999999999999999999999999998764
No 158
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.28 E-value=3.3e-07 Score=91.83 Aligned_cols=42 Identities=31% Similarity=0.520 Sum_probs=37.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
..++||+|||||++||+||+.|++.|++|+|+|++ .+||.|.
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~ 59 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV 59 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence 34689999999999999999999999999999985 7888764
No 159
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.28 E-value=4.2e-07 Score=90.45 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=38.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 41 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL 41 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 37999999999999999999999999999999989999864
No 160
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=98.27 E-value=4.5e-07 Score=89.47 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 56899999999999999999999999999999976
No 161
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.26 E-value=4.5e-07 Score=91.05 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEee--------CCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES--------RDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~--------~~~~GG~~~ 68 (491)
..++||+|||||++||+||..|++.|++|+|+|| ...+||.|.
T Consensus 4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~ 54 (488)
T 3dgz_A 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV 54 (488)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence 3578999999999999999999999999999998 567888664
No 162
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.26 E-value=3.2e-07 Score=92.16 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=39.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEe--------eCCCCcceee
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLE--------SRDRVGGRVH 68 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE--------~~~~~GG~~~ 68 (491)
|++++||+|||||++|++||+.|++ .|++|+|+| +.+.+||.|.
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~ 56 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV 56 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence 4456899999999999999999999 999999999 3578999764
No 163
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.25 E-value=4.7e-07 Score=88.61 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (491)
++||+|||||++|+++|+.|+++ |++|+|+|+....+|
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~ 75 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE 75 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence 48999999999999999999999 999999999765444
No 164
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.7e-07 Score=90.69 Aligned_cols=41 Identities=34% Similarity=0.542 Sum_probs=37.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 50 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV 50 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence 4689999999999999999999999999999996 7898864
No 165
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=98.23 E-value=1.4e-06 Score=87.48 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (491)
..+||+|||||++||++|..|.+.|....++|+.+..|+
T Consensus 38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~ 76 (501)
T 4b63_A 38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ 76 (501)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence 458999999999999999999988776666677665554
No 166
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.23 E-value=4e-07 Score=91.73 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=39.9
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|++|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 229 l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 277 (499)
T 1xdi_A 229 LEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS 277 (499)
T ss_dssp HHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC
Confidence 444443 389999999999999877778888888889999999999864
No 167
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.22 E-value=6.9e-07 Score=89.96 Aligned_cols=41 Identities=41% Similarity=0.563 Sum_probs=37.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
+++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~ 41 (500)
T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV 41 (500)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence 3589999999999999999999999999999997 5888764
No 168
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.22 E-value=5.6e-07 Score=90.40 Aligned_cols=40 Identities=38% Similarity=0.498 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++||+||..|++.|++|+|+|++ .+||.|.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~ 47 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCA 47 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCccc
Confidence 489999999999999999999999999999995 5898763
No 169
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.21 E-value=8.8e-07 Score=85.96 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRV 63 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~ 63 (491)
+||+|||||++||++|+.|++. |++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4899999999999999999999 9999999998766
No 170
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.20 E-value=6.7e-07 Score=89.74 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCC-cEEEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|++|+.+++ .+.|.+.+|+++.+|.||+|+..
T Consensus 237 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 444444 3899999999999998764 47888889988999999999864
No 171
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=98.20 E-value=1e-06 Score=92.77 Aligned_cols=44 Identities=32% Similarity=0.671 Sum_probs=40.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
...+||+|||||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~ 430 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ 430 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence 45689999999999999999999999999999999999998764
No 172
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.19 E-value=6.4e-07 Score=89.15 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~ 44 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL 44 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence 468999999999999999999999999999999 78999875
No 173
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.17 E-value=8.9e-07 Score=88.08 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=37.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~ 42 (455)
T 1ebd_A 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL 42 (455)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence 3589999999999999999999999999999997 7888763
No 174
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.17 E-value=1.1e-06 Score=88.03 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC---------CCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD---------RVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~---------~~GG~~~ 68 (491)
..++||+|||||++|++||+.|++.|++|+|+|+.. .+||.|.
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~ 58 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCV 58 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeec
Confidence 357899999999999999999999999999999521 3788764
No 175
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=98.15 E-value=1.8e-06 Score=81.46 Aligned_cols=40 Identities=35% Similarity=0.373 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
++||+|||||++|+.||+.|++.|++|+|+|+++..+.-.
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~ 40 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA 40 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence 4799999999999999999999999999999988666443
No 176
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.15 E-value=1.3e-06 Score=90.01 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=37.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCccee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (491)
...+||+|||||++||+||+.|++.|++|+|+|+.+..||.+
T Consensus 44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 346899999999999999999999999999999999988854
No 177
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.15 E-value=1.2e-06 Score=87.43 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=36.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++|++||..|++.|++|+|+|+++ +||.|.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~ 45 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL 45 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence 4899999999999999999999999999999977 898763
No 178
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.11 E-value=1.4e-06 Score=86.93 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~ 42 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL 42 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence 479999999999999999999999999999997 7888764
No 179
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.10 E-value=1.9e-05 Score=78.42 Aligned_cols=41 Identities=46% Similarity=0.657 Sum_probs=36.9
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|++|+.+++++.+.+++|+++.+|.||+|+..
T Consensus 222 Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~ 262 (455)
T 2yqu_A 222 GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGR 262 (455)
T ss_dssp TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred CCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCC
Confidence 89999999999999887778888888889999999999864
No 180
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=98.07 E-value=2.8e-06 Score=88.64 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
...+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~ 413 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN 413 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence 3468999999999999999999999999999999999998764
No 181
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.05 E-value=2.9e-06 Score=86.03 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=38.4
Q ss_pred HHHHHh--ccCCeecCceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLA--KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~--~gv~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|.+.+. .|++++++ +|++|+.++++ +.|++.+|+++.||.||.|+..+..
T Consensus 181 L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 181 LTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 444444 38999999 69999886554 3677778778999999999987653
No 182
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.04 E-value=2.9e-06 Score=86.29 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC-CCcc
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGG 65 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~-~~GG 65 (491)
..++||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~ 59 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR 59 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence 356899999999999999999999999999999974 4553
No 183
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=98.03 E-value=2.7e-06 Score=83.91 Aligned_cols=39 Identities=33% Similarity=0.598 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeeCCCCcce
Q 011202 28 SPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGR 66 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~--~G~~V~vlE~~~~~GG~ 66 (491)
++||+|||||++||+||+.|++ .|++|+|+|+++..++.
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~ 42 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT 42 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC
Confidence 4799999999999999999999 78999999999887754
No 184
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.03 E-value=2.9e-06 Score=84.95 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=34.0
Q ss_pred ccchhhhhhhhhhhccccCCCCCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcc
Q 011202 4 ASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (491)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (491)
+|.+|..+.+...... ......++||+|||||++|++||..|++. |.+|+|+|+++..|+
T Consensus 14 ~~~~np~~g~~~~~~~--~~~~~~~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~ 75 (480)
T 3cgb_A 14 SMTGGQQMGRTLYDDD--DKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSY 75 (480)
T ss_dssp -------------------------CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSB
T ss_pred cccchhhhcccccCCC--CcCccccceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCC
Confidence 4677777777653321 21112357999999999999999999996 899999999887653
No 185
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.02 E-value=3.7e-05 Score=76.19 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=35.9
Q ss_pred cCCeecCceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 222 Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~ 263 (450)
T 1ges_A 222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR 263 (450)
T ss_dssp SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence 8999999999999986554 7888889988999999999864
No 186
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.02 E-value=4.3e-06 Score=85.13 Aligned_cols=50 Identities=26% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHh-c-cCCeecCceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecchhhh
Q 011202 231 VINTLA-K-GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 281 (491)
Q Consensus 231 l~~~l~-~-gv~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l 281 (491)
|.+.+. . |++++++ +|++|+.++++ +.|.+.+|+++.||.||.|+.....
T Consensus 200 L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 200 LRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp HHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred HHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 444443 3 8999999 99999986554 5788888888999999999987653
No 187
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=98.00 E-value=2.2e-06 Score=84.90 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=38.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-C------CCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHD-A------SFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~-~------G~~V~vlE~~~~~GG~~~ 68 (491)
.+||+|||||++|++||..|++ . |++|+|||+.+.+||.++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~ 50 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR 50 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence 5799999999999999999999 7 999999999999998875
No 188
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=98.00 E-value=3.3e-06 Score=91.45 Aligned_cols=41 Identities=41% Similarity=0.674 Sum_probs=39.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (491)
.+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~ 168 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL 168 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence 57999999999999999999999999999999999999887
No 189
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.99 E-value=4.4e-06 Score=91.16 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++||+||+.|++.|+ +|+|||+.+.+||.+.
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~ 228 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 228 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc
Confidence 36799999999999999999999999 7999999999999764
No 190
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.99 E-value=3.3e-06 Score=85.20 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecc
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 277 (491)
+.+.|. +|+++++++.|.+++..++++.|.+.+++++.+|.|++|+.
T Consensus 269 l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG 316 (542)
T 4b1b_A 269 VKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG 316 (542)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc
Confidence 333443 38999999999999999999999999998999999999985
No 191
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=97.99 E-value=4.4e-05 Score=75.92 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=37.1
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCc-EEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~ 278 (491)
.|++++++++|.+|+.+++++.|.+.+|+ ++.+|.||+|+..
T Consensus 220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 262 (463)
T 2r9z_A 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR 262 (463)
T ss_dssp TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC
Confidence 38999999999999987777888888998 8999999999864
No 192
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.98 E-value=4.2e-05 Score=76.10 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 204 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI 204 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence 368999999999999999999999999999996643
No 193
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.98 E-value=2.1e-06 Score=86.13 Aligned_cols=41 Identities=37% Similarity=0.581 Sum_probs=38.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCcceeee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (491)
++||+|||||++||+||+.|++. ++|+|+|+++.+||.+..
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~ 148 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL 148 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence 46999999999999999999999 999999999999998753
No 194
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=97.97 E-value=5.7e-05 Score=73.85 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=36.4
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++...|.+.+|+++.+|.||+|++.
T Consensus 199 GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~ 239 (410)
T 3ef6_A 199 GVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA 239 (410)
T ss_dssp TCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred CCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence 89999999999998866545888999999999999999875
No 195
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.95 E-value=4e-06 Score=83.19 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCcceee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVH 68 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~ 68 (491)
..+||+|||||++|++||..|++.| ++|+|||+.+.+||..+
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~ 48 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 48 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence 4579999999999999999999998 99999999999998764
No 196
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.95 E-value=4.7e-06 Score=85.91 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
..++||+|||||++||+||..|++.|++|+|+|+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~ 138 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY 138 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence 3578999999999999999999999999999998
No 197
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=97.94 E-value=7.6e-06 Score=80.09 Aligned_cols=37 Identities=27% Similarity=0.558 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc--EEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFK--VVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~--V~vlE~~~~~G 64 (491)
++||+|||||++||+||..|++.|++ |+|+|+++..+
T Consensus 2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~ 40 (410)
T 3ef6_A 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP 40 (410)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS
T ss_pred CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC
Confidence 46999999999999999999999987 99999977543
No 198
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.93 E-value=7.7e-06 Score=80.59 Aligned_cols=48 Identities=29% Similarity=0.364 Sum_probs=38.7
Q ss_pred HHHHHh-ccCCeecCceeEEEEe--cCCcE-EEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITR--HYIGV-KVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~--~~~~v-~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|.+|+. +++++ .|.+.+|+++.+|.||+|++.
T Consensus 197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 334443 3999999999999987 55665 688889989999999999874
No 199
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.93 E-value=5.8e-06 Score=82.00 Aligned_cols=39 Identities=28% Similarity=0.495 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcce
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR 66 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG~ 66 (491)
++||+|||||++||+||+.|++. |++|+|+|+++.+++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~ 43 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA 43 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC
Confidence 57999999999999999999998 7899999999877654
No 200
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=9e-05 Score=74.02 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=35.1
Q ss_pred cCCeecCceeEEEEecCCc--EEEEEcCC-cEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIG--VKVTVEGG-KTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~--v~v~~~~g-~~~~ad~VI~a~p~ 278 (491)
|++++++++|++|+.++++ +.|.+++| +++.+|.||+|+..
T Consensus 240 Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 283 (479)
T 2hqm_A 240 GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR 283 (479)
T ss_dssp TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence 8999999999999876554 67888888 78999999999863
No 201
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.87 E-value=0.00012 Score=72.00 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~ 184 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence 468999999999999999999999999999996643
No 202
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.87 E-value=6.4e-05 Score=74.58 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 205 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 205 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 468999999999999999999999999999997643
No 203
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=97.86 E-value=7.8e-06 Score=80.77 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=34.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH---CCCcEEEEeeCCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDRV 63 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~---~G~~V~vlE~~~~~ 63 (491)
+.++||+|||||++||+||+.|++ .|++|+|+|+++..
T Consensus 2 ~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~ 42 (437)
T 3sx6_A 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF 42 (437)
T ss_dssp TTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence 346799999999999999999999 89999999998753
No 204
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=97.83 E-value=0.00011 Score=73.68 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+++|||||..|+-.|..|++.|.+|+++|+.+++
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 217 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV 217 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 467999999999999999999999999999997654
No 205
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.83 E-value=9.9e-05 Score=73.05 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
...+++|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 3568999999999999999999999999999997643
No 206
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.82 E-value=1.2e-05 Score=79.89 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCcc
Q 011202 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (491)
+||+|||||++|++||..|++. |.+|+|+|+++.+|.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~ 39 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF 39 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence 5899999999999999999998 999999999887653
No 207
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.81 E-value=0.00013 Score=73.32 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=35.9
Q ss_pred ccCCeecCceeEEEEecCCc-EEEEEcCCcE-EEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKT-FVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~-v~v~~~~g~~-~~ad~VI~a~p~ 278 (491)
.|++++++++|.+|+.++++ +.|.+++|++ +.+|.||+|++.
T Consensus 230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~ 273 (500)
T 1onf_A 230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR 273 (500)
T ss_dssp TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence 38999999999999986544 7888889987 999999999864
No 208
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.81 E-value=9.6e-06 Score=82.23 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=31.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE~~~ 61 (491)
.++||+||||||.+|+..|.+|++ .|++|+|||+.+
T Consensus 15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~ 51 (526)
T 3t37_A 15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE 51 (526)
T ss_dssp --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence 368999999999999999999998 688999999964
No 209
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.80 E-value=1.3e-05 Score=79.46 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCc
Q 011202 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (491)
+||+|||||++|++||..|++. |.+|+|+|+++.+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence 5899999999999999999997 89999999988776
No 210
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.80 E-value=9.1e-05 Score=74.00 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 218 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 218 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence 468999999999999999999999999999997643
No 211
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.80 E-value=9.4e-06 Score=81.42 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEeeCCCCcc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGG 65 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G---~~V~vlE~~~~~GG 65 (491)
+++||+|||||++|++||..|++.| .+|+|+|+++.+|.
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~ 75 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISF 75 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSB
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCc
Confidence 3589999999999999999999988 99999999887653
No 212
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.79 E-value=1.6e-05 Score=77.65 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~~~G 64 (491)
+++||+|||||++|++||..|++.|+ +|+|+|+++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~ 45 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 45 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence 56899999999999999999999998 499999988654
No 213
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.79 E-value=0.00018 Score=70.24 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 179 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 179 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 46899999999999999999999999999999764
No 214
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.79 E-value=8.3e-05 Score=74.33 Aligned_cols=41 Identities=29% Similarity=0.226 Sum_probs=35.4
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcC----CcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~----g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++++.|++.+ |+++.+|.||+|+..
T Consensus 240 gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 240 FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred CCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 88999999999999877777777776 778999999999863
No 215
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.77 E-value=0.00018 Score=72.05 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 208 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS 208 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence 56899999999999999999999999999999664
No 216
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=97.76 E-value=0.00013 Score=73.59 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=35.9
Q ss_pred ccCCeecCceeEEEEecCCc----EEEEEcCCc-EEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIG----VKVTVEGGK-TFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~----v~v~~~~g~-~~~ad~VI~a~p~ 278 (491)
.|++++++++|++|+.++++ +.|.+++|+ ++.+|.||+|+..
T Consensus 268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 268 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE 314 (523)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred CCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence 38999999999999986555 678888887 8999999999864
No 217
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.75 E-value=0.00019 Score=71.41 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 205 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR 205 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 46899999999999999999999999999999664
No 218
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=97.75 E-value=0.00016 Score=72.37 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=36.3
Q ss_pred ccCCeecCceeEEEEecCC-cEEEEEcCCcEEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.|++++++++|.+|+.+++ .+.|.+.+|+++.+|.||+|+..
T Consensus 248 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 248 NGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred CCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 3899999999999998654 47888889989999999999863
No 219
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.74 E-value=1.6e-05 Score=79.82 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHHh-ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 231 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 231 l~~~l~-~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
+.+.+. .|++++++++|.+|+.+++++.|++.+|+++.+|.||+|++.
T Consensus 232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~ 280 (493)
T 1m6i_A 232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 280 (493)
T ss_dssp HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence 344444 389999999999999877777888899999999999999875
No 220
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.74 E-value=0.00019 Score=71.07 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 183 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER 183 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence 45799999999999999999999999999998653
No 221
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.73 E-value=2e-05 Score=80.22 Aligned_cols=38 Identities=39% Similarity=0.515 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
...+|++|||||++|+++|++|++.|.+|+|+|+....
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~ 42 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS 42 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 35789999999999999999999999999999997643
No 222
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=97.73 E-value=0.00017 Score=72.28 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA---SFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~---G~~V~vlE~~~~~ 63 (491)
..+++|||||.+|+-+|..|++. |.+|+|+|+.+++
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~ 225 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 225 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence 45899999999999999999999 9999999997643
No 223
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.72 E-value=1e-05 Score=81.98 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
....+|+||||||.+|+++|..|++ |.+|+|||+....+
T Consensus 23 ~~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~ 61 (536)
T 1ju2_A 23 LEGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT 61 (536)
T ss_dssp SEEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred ccCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence 3456999999999999999999999 99999999976544
No 224
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.71 E-value=0.00023 Score=71.75 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+++|||||+.|+=.|..+++.|.+|+|+++..
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~ 256 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI 256 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence 4579999999999999999999999999998743
No 225
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.70 E-value=0.00018 Score=71.70 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 213 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV 213 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence 468999999999999999999999999999997643
No 226
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.70 E-value=0.00023 Score=70.85 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 208 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR 208 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence 46899999999999999999999999999999664
No 227
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.69 E-value=0.00011 Score=72.91 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 205 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 205 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence 46899999999999999999999999999999764
No 228
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.67 E-value=2.7e-05 Score=74.85 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..||+|||||++|++||..|++.| +|+|+|+++..
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~ 42 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP 42 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence 459999999999999999999999 99999997653
No 229
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=97.66 E-value=0.00031 Score=71.76 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||.+|+-+|..|++.|.+|+++|+.+
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 184 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD 184 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 3579999999999999999999999999999955
No 230
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.64 E-value=0.00037 Score=69.74 Aligned_cols=36 Identities=36% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 228 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT 228 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 356899999999999999999999999999999664
No 231
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.61 E-value=0.0002 Score=71.37 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 211 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 211 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 46899999999999999999999999999999664
No 232
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=97.60 E-value=3.6e-05 Score=75.76 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~~ 62 (491)
.++|+|||||++|++||..|++.+ ++|+|+|+++.
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~ 38 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY 38 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence 457999999999999999999865 78999999874
No 233
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.59 E-value=0.00045 Score=68.69 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=34.5
Q ss_pred ccCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 237 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
.|++++++++|.+|+.+++.+.|.++ ++++.+|.||+|+..
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~ 269 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGR 269 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCE
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCC
Confidence 38999999999999987776777776 458999999999864
No 234
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.56 E-value=0.00052 Score=68.46 Aligned_cols=41 Identities=37% Similarity=0.374 Sum_probs=35.2
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCC---cEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.+++++.+.+.++ +++.+|.||+|++.
T Consensus 235 Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 235 GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred CCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 889999999999998888877777654 57999999999864
No 235
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.55 E-value=4.6e-05 Score=75.08 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=35.7
Q ss_pred HHHHHHHhc-cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecc
Q 011202 229 LPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 277 (491)
Q Consensus 229 ~~l~~~l~~-gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 277 (491)
..+.+.+.+ |++++++++|++++. + .|++++|+++.+|.||+|+.
T Consensus 192 ~~~~~~l~~~gV~i~~~~~v~~~~~--~--~v~~~~g~~~~~D~vl~a~G 237 (437)
T 4eqs_A 192 QPILDELDKREIPYRLNEEINAING--N--EITFKSGKVEHYDMIIEGVG 237 (437)
T ss_dssp HHHHHHHHHTTCCEEESCCEEEEET--T--EEEETTSCEEECSEEEECCC
T ss_pred HHHHHHhhccceEEEeccEEEEecC--C--eeeecCCeEEeeeeEEEEec
Confidence 345555543 999999999998853 2 46788999999999999986
No 236
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.55 E-value=4.5e-05 Score=76.46 Aligned_cols=36 Identities=17% Similarity=0.565 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+..++|+|||||.+|+++|..|++.+++|+|+|+++
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~ 75 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS 75 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence 356789999999999999999999999999999976
No 237
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=97.55 E-value=5.4e-05 Score=76.06 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+|++|||||++|+++|+.|++.|.+|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 46899999999999999999999999999999987655
No 238
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.53 E-value=0.0005 Score=68.81 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----CCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHD----ASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~----~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++ .|.+|+++++.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~ 218 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 218 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence 4579999999999999999987 4788999988553
No 239
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.51 E-value=0.00041 Score=69.50 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 232 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT 232 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 46799999999999999999999999999988654
No 240
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=97.51 E-value=5.2e-05 Score=77.07 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~~ 62 (491)
...+|+||||||.+|+++|..|++.| .+|+||||...
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 35699999999999999999999998 69999999764
No 241
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.50 E-value=0.00042 Score=69.13 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 220 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH 220 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence 346899999999999999999999999999999654
No 242
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.49 E-value=0.00061 Score=67.67 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=35.1
Q ss_pred cCCeecCceeEEEEecCCc-EEEE-EcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIG-VKVT-VEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~-v~v~-~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|.+|+.++++ +.|. +++|+ +.+|.||+|+..
T Consensus 225 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~ 266 (463)
T 4dna_A 225 GIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR 266 (463)
T ss_dssp TCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred CCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence 8999999999999987665 6788 88887 999999999864
No 243
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=97.48 E-value=6.5e-05 Score=73.21 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=35.4
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCcEEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 278 (491)
|++++++++|..++.+++...|.+.+|+++.+|.||+++|.
T Consensus 216 gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~ 256 (401)
T 3vrd_B 216 LIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQ 256 (401)
T ss_dssp SEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCE
T ss_pred CcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCc
Confidence 77899999999998887777888899999999999998763
No 244
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=97.42 E-value=0.0008 Score=69.03 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 221 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ 221 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 45799999999999999999999999999998653
No 245
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=97.42 E-value=0.0001 Score=74.00 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=34.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|++|||||.+|+++|+.|++.|.+|+|+|+...
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4578999999999999999999999999999999764
No 246
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=97.41 E-value=8e-05 Score=75.64 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~ 61 (491)
...+|+||||||.+|+++|.+|++. |.+|+||||.+
T Consensus 17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 3579999999999999999999975 78999999976
No 247
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.38 E-value=0.001 Score=66.37 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+++.++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 221 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 221 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence 46899999999999999999999999999998653
No 248
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=97.35 E-value=0.00012 Score=74.96 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV 63 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE~~~~~ 63 (491)
..+|++|||||.+|+++|+.|++ .|.+|+|+|+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 46899999999999999999999 79999999997643
No 249
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.0012 Score=65.31 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||+|.+|+-+|..|++.|.+|+|+|+.++
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 182 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER 182 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 45899999999999999999999999999999653
No 250
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.32 E-value=0.0016 Score=64.97 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
..+++|||||.+|+-.|..|++.|.+|+|+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 218 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR 218 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 45799999999999999999999999999987
No 251
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=97.31 E-value=0.00013 Score=73.86 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCc
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVG 64 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~G 64 (491)
+.+|++|||||.+|+++|+.|++. |.+|+|+|+.....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~ 50 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR 50 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCC
Confidence 568999999999999999999998 89999999976543
No 252
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=97.29 E-value=9.4e-05 Score=74.99 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE~~~~~ 63 (491)
++|++|||||.+|+++|.+|++ .|.+|+||||.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 5899999999999999999998 68999999997655
No 253
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.28 E-value=0.0016 Score=64.59 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+++|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 206 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR 206 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence 46899999999999999999999999999998653
No 254
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.26 E-value=0.0017 Score=63.75 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l 182 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI 182 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence 457999999999999999999999999999997754
No 255
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=97.26 E-value=0.002 Score=60.32 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 178 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 178 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 4679999999999999999999999999998854
No 256
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=97.26 E-value=0.00041 Score=68.91 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=35.4
Q ss_pred cCCeecCceeEEEEecCCcEEEEEc---CCc--EEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVE---GGK--TFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~---~g~--~~~ad~VI~a~p~ 278 (491)
|++++++++|++|+.+++++.|++. +|+ ++.+|.||+|+..
T Consensus 330 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~ 375 (463)
T 3s5w_A 330 RHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGY 375 (463)
T ss_dssp CSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCE
T ss_pred CeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCC
Confidence 8899999999999998888877776 665 4899999999975
No 257
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.19 E-value=0.0025 Score=63.68 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
..+++|||||.+|+-.|..|++.|.+|+++++.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 217 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS 217 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence 457999999999999999999999999999873
No 258
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.07 E-value=0.0024 Score=60.19 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~ 206 (338)
T 3itj_A 173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKD 206 (338)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence 4679999999999999999999999999998854
No 259
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=97.01 E-value=0.0033 Score=59.24 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~ 185 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP 185 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence 4689999999999999999999999999999854
No 260
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=96.76 E-value=0.0051 Score=57.71 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~ 187 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD 187 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC
Confidence 4679999999999999999999999999998854
No 261
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=96.76 E-value=0.007 Score=56.44 Aligned_cols=34 Identities=38% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~ 187 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD 187 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 4689999999999999999999999999998854
No 262
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=96.73 E-value=0.011 Score=59.54 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
..+++|||||.+|+-.|..|++.|.+|+|+++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~ 241 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR 241 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEec
Confidence 34699999999999999999999999999987
No 263
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=96.53 E-value=0.0041 Score=50.31 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....+|+|||+|-.|...|..|.+.|++|+++|++.
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 345679999999999999999999999999999965
No 264
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=96.51 E-value=0.0027 Score=51.20 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999854
No 265
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=96.43 E-value=0.0025 Score=59.48 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 179 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE 179 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence 35899999999999999999999999999998664
No 266
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=96.42 E-value=0.0029 Score=49.23 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
++++|+|+|+|..|...|..|.+.| ++|++++++.
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 4568999999999999999999999 8999999854
No 267
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=96.40 E-value=0.0024 Score=61.60 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++.
T Consensus 147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 182 (385)
T 3klj_A 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL 182 (385)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence 479999999999999999999999999999987654
No 268
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=96.40 E-value=0.0037 Score=51.59 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||+|..|...|..|.+.|++|+++|++.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45689999999999999999999999999999865
No 269
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=96.40 E-value=0.0082 Score=59.99 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=30.2
Q ss_pred cCCeecCceeEEEEecCCcEEEEEcCCc----EEEcCEEEEecch
Q 011202 238 GLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPL 278 (491)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~v~~~~g~----~~~ad~VI~a~p~ 278 (491)
|+++++++.|++|+.++....+...+|+ ++.+|.||+|+..
T Consensus 286 GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 286 SIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp TCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred ceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 8999999999999643222344455663 6899999999863
No 270
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0047 Score=49.95 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.+|+|+|+|-.|...|..|.+.|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999864
No 271
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=96.18 E-value=0.01 Score=61.99 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 27 RSPSVIVIG--AGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 27 ~~~dv~IIG--aGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
...+|+||| +|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l 560 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV 560 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence 345799999 9999999999999999999999986643
No 272
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=96.15 E-value=0.0048 Score=60.55 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
.++|+|||.|.+|+++|..|+++|++|+++|.....-
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~ 41 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence 4579999999999999999999999999999876543
No 273
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=96.11 E-value=0.0058 Score=58.87 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+++|||||++|+.+|..|++.|.+|+|+|+.+++.
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 181 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVM 181 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchh
Confidence 4689999999999999999999999999999987654
No 274
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=96.01 E-value=0.0054 Score=58.70 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~ 63 (491)
.+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 178 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 178 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence 57999999999999999999999999999997754
No 275
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=95.98 E-value=0.0057 Score=56.94 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~ 185 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD 185 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence 4689999999999999999999999999999743
No 276
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=95.96 E-value=0.0056 Score=60.32 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||.|.+|+++|..|.++|++|++.|++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 5689999999999999999999999999999965
No 277
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=95.91 E-value=0.0076 Score=55.90 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4579999999999999999999999999999843
No 278
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=95.89 E-value=0.007 Score=56.68 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|..|.+.|..|++.|++|+++.+++
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 4689999999999999999999999999999864
No 279
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=95.87 E-value=0.0074 Score=58.90 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|+|||+|..|...|..|+++|++|+++|++..
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 346899999999999999999999999999998764
No 280
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=95.84 E-value=0.0089 Score=54.82 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999854
No 281
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=95.74 E-value=0.0073 Score=56.30 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|-.|.+.|..|+++|++|+++.++.
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 4689999999999999999999999999999854
No 282
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.72 E-value=0.014 Score=47.89 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|+|+|-.|...|..|.+.|++|+++|+++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4579999999999999999999999999999963
No 283
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.72 E-value=0.01 Score=47.89 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.+|+|+|+|-.|...|..|.+.|++|+++|++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3569999999999999999999999999999853
No 284
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=95.66 E-value=0.01 Score=54.96 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||||..|..-|..++.+|++|+++|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4579999999999999999999999999999854
No 285
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=95.59 E-value=0.01 Score=58.18 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|..|+..|..|+++|++|+++|++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 689999999999999999999999999999864
No 286
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.57 E-value=0.011 Score=55.30 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~-aA~~L~~~G~~V~vlE~~~ 61 (491)
.+++|.|||.|-+|++ +|..|.++|++|++.|++.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4568999999999997 7889999999999999865
No 287
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=95.54 E-value=0.012 Score=54.79 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|.+-|..|+++|++|+++|+++
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~~ 39 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4679999999999999999999999999999854
No 288
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=95.47 E-value=0.02 Score=56.48 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|..|...|..|+++|++|+++|++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4679999999999999999999999999999864
No 289
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=95.46 E-value=0.0096 Score=54.94 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|-.|.+.|..|+++|++|++++++.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 4689999999999999999999999999999863
No 290
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.45 E-value=0.014 Score=49.63 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~ 61 (491)
..+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 45799999999999999999999 99999999865
No 291
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=95.42 E-value=0.011 Score=54.62 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
|+++++|.|||.|..|...|..|+++|++|++++++..
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 34467899999999999999999999999999998664
No 292
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=95.40 E-value=0.015 Score=56.42 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+.+.+|+|||.|..||..|..|+++|++|+.+|-+.
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 3457789999999999999999999999999999753
No 293
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=95.40 E-value=0.015 Score=55.04 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+..+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999999999999999999999999854
No 294
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=95.39 E-value=0.011 Score=58.13 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~-G~-~V~vlE~~~~ 62 (491)
+.++|+|||+|..|+..|..|+++ |+ +|+++|++..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 456899999999999999999999 99 9999998765
No 295
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=95.38 E-value=0.013 Score=57.88 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|..|+..|..|+++|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5689999999999999999999999999999853
No 296
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=95.33 E-value=0.015 Score=54.23 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
.+.++|+|||+|..|.+.|..|++.|+ +|+++|.+.
T Consensus 2 ~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 2 IERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 445789999999999999999999998 999999864
No 297
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=95.26 E-value=0.015 Score=50.88 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|-.|...|..|.+.|++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999865
No 298
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=95.24 E-value=0.019 Score=49.95 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++|+|||+|..|.+.|..|++.|++|++++++..
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 456899999999999999999999999999998654
No 299
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=95.23 E-value=0.016 Score=53.97 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|..|...|..|++.|++|++++++.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4689999999999999999999999999998853
No 300
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=95.16 E-value=0.017 Score=55.01 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 200 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG 200 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence 45799999999999999999999999999998653
No 301
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=95.15 E-value=0.021 Score=54.57 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999999854
No 302
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=95.13 E-value=0.02 Score=53.17 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+++|.|||.|..|...|..|++.|++|++++++.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 346789999999999999999999999999999865
No 303
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=95.12 E-value=0.02 Score=52.56 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
++|+|||+|..|...|..|+++|++|++++++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 3699999999999999999999999999998653
No 304
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=95.09 E-value=0.024 Score=52.84 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..++|+|||||-.|.+.|..|+..|+ +|.++|.+.
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 45689999999999999999999998 999999754
No 305
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=95.05 E-value=0.022 Score=53.60 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
.++|+|||+|..|.+.|..|+++|++|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 468999999999999999999999999999874
No 306
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=95.05 E-value=0.021 Score=52.91 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 177 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG 177 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 46899999999999999999999999999998653
No 307
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=95.03 E-value=0.021 Score=53.35 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++++|+|||+|-.|.+.|..|++.|+ +|+++|++.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 45689999999999999999999998 999999854
No 308
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=95.03 E-value=0.021 Score=52.36 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+++|.|||+|..|-.-|..|+ +|++|+++|++.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 4678999999999999999999 999999999854
No 309
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=94.99 E-value=0.02 Score=53.54 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...++|.|||.|..|...|..|++.|++|++++++.
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 356789999999999999999999999999999854
No 310
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=94.97 E-value=0.021 Score=52.97 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|-.|.+.|..|+ .|++|+++.++.
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 468999999999999999999 999999998854
No 311
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=94.97 E-value=0.021 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999998853
No 312
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=94.91 E-value=0.021 Score=57.59 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 457899999999999999999999999999999764
No 313
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.90 E-value=0.019 Score=51.81 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.|+|||||-.|+..|..|.+.|.+|+|++...
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 35689999999999999999999999999999754
No 314
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=94.81 E-value=0.026 Score=55.79 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|+|||+|.+|+-.|..|++.|.+|+|+++.+.
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~ 231 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 231 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence 356899999999999999999999999999998654
No 315
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=94.81 E-value=0.024 Score=52.57 Aligned_cols=35 Identities=40% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 178 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 178 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence 45899999999999999999999999999998664
No 316
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=94.77 E-value=0.031 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
+.++|+|||||..|.+.|..|++.|+ +|.++|.+.
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 34689999999999999999999998 999999864
No 317
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=94.77 E-value=0.019 Score=56.70 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~ 61 (491)
|.++++|+|||+|..|+..|..|+++ |++|++++++.
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 44557899999999999999999999 89999999853
No 318
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=94.76 E-value=0.032 Score=54.27 Aligned_cols=37 Identities=38% Similarity=0.519 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+++|||+|.+|+-+|..|.+.|.+|+++|+.+++-
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l 188 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL 188 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence 4579999999999999999999999999999987654
No 319
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=94.75 E-value=0.029 Score=48.92 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....|+|||||-.|...|..|.+.|.+|+|++...
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 45689999999999999999999999999998643
No 320
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=94.74 E-value=0.028 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++++|.|||.|..|...|..|++.|++|++++++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45689999999999999999999999999998854
No 321
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=94.73 E-value=0.025 Score=54.70 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|+|||+|..|+..|..|++ |++|+++|++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 45689999999999999999998 99999999864
No 322
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=94.72 E-value=0.028 Score=52.87 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+.++|.|||+|..|...|..|+++|++|++++++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5678999999999999999999999999999884
No 323
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=94.71 E-value=0.029 Score=53.12 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|..|.+.|..|+++|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999853
No 324
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=94.68 E-value=0.024 Score=57.18 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++|+|||+|.+|+-.|..|++.+.+|+|+++.+.
T Consensus 184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 456899999999999999999999999999999774
No 325
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=94.65 E-value=0.034 Score=49.68 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46789999999999999999999999999999854
No 326
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=94.65 E-value=0.028 Score=52.70 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 193 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA 193 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence 346899999999999999999999999999999664
No 327
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=94.65 E-value=0.03 Score=54.23 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+++|||+|.+|+-+|..|.+.|.+|+++|+.+++.
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 178 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence 4579999999999999999999999999999987654
No 328
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=94.62 E-value=0.029 Score=52.55 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
.++|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 4689999999999999999999998 999999864
No 329
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=94.60 E-value=0.032 Score=54.39 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
...++|||.|..|+..|..|+++|++|++++++..
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998763
No 330
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=94.60 E-value=0.029 Score=52.27 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
++++|.|||.|..|...|..|++.| ++|++++++.
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4578999999999999999999999 9999999864
No 331
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=94.59 E-value=0.03 Score=52.55 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~ 189 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE 189 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence 46899999999999999999999999999998654
No 332
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=94.56 E-value=0.031 Score=52.20 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 186 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT 186 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence 46899999999999999999999999999998653
No 333
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=94.56 E-value=0.037 Score=54.52 Aligned_cols=37 Identities=35% Similarity=0.371 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+++|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 183 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL 183 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence 4679999999999999999999999999999987654
No 334
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=94.56 E-value=0.025 Score=57.09 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 457899999999999999999999999999999774
No 335
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=94.53 E-value=0.032 Score=51.15 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999865
No 336
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=94.45 E-value=0.036 Score=52.51 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+++|.|||.|..|...|..|++.|++|++++++.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35789999999999999999999999999999854
No 337
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=94.42 E-value=0.036 Score=51.71 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=29.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
...++|+|||+|..|.+.|..|++.|++|+++ ++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 35678999999999999999999999999999 64
No 338
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=94.40 E-value=0.035 Score=54.57 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRV 63 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~~~ 63 (491)
..+|+|||+|.+|+-.|..|++.|.+ |+|+++.+.+
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~ 248 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 248 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56899999999999999999999999 9999996643
No 339
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=94.39 E-value=0.039 Score=54.47 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999865
No 340
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=94.39 E-value=0.028 Score=54.97 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|..|+..|..|+++|++|++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999999853
No 341
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=94.36 E-value=0.032 Score=51.56 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.|||+|..|...|..|++.|++|++++++.
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~~G~~V~~~d~~~ 36 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 5689999999999999999999999999998854
No 342
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=94.36 E-value=0.026 Score=51.80 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999865
No 343
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=94.34 E-value=0.051 Score=50.33 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.++|.|||.|..|...|..|.+.|++|++++++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999999999999999999999998854
No 344
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=94.34 E-value=0.028 Score=51.78 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=29.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.|+.+|.+||-|..|...|..|.++|++|++++++.
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~ 38 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA 38 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 355689999999999999999999999999999865
No 345
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=94.28 E-value=0.049 Score=47.50 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|..|...|..|.+.|++|++++++.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4679999999999999999999999999999854
No 346
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=94.21 E-value=0.022 Score=49.95 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEE-EeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVL-LESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~v-lE~~ 60 (491)
+++|.|||+|..|.+.|..|++.|++|++ ++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~ 56 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRG 56 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 56899999999999999999999999998 7664
No 347
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=94.16 E-value=0.05 Score=50.43 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
+++|+|||||-.|...|+.|+..|+ +|.++|.+.
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 3689999999999999999999997 899999754
No 348
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=94.11 E-value=0.037 Score=51.50 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~ 189 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK 189 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence 46799999999999999999999999999998653
No 349
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=94.04 E-value=0.061 Score=50.04 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|..|...|..|.+.|++|++++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4789999999999999999999999999998854
No 350
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=94.03 E-value=0.041 Score=50.78 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++++|.|||+|..|...|..|.+.|++|++++++.
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 45689999999999999999999999999998754
No 351
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=94.02 E-value=0.049 Score=50.38 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++|+|||||..|.+.|+.|+.+|+ +|.++|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 379999999999999999999998 899999854
No 352
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=93.99 E-value=0.024 Score=45.96 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|...|..|.+.|++|+|++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4579999999999999999999999999999854
No 353
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=93.99 E-value=0.052 Score=55.56 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
..+|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 347999999999999999999999999999984
No 354
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=93.95 E-value=0.06 Score=50.01 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
.++|+|||+|..|.+.|..|.+.|+ +|++++++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 4689999999999999999999999 899998854
No 355
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=93.95 E-value=0.062 Score=52.85 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~~ 62 (491)
...+|+|||||.+|+-+|..|.+.|.+ |+++++.+.
T Consensus 263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR 299 (456)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence 457899999999999999999999984 999988553
No 356
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=93.91 E-value=0.043 Score=50.63 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|||+|..|...|..|.+.|++|++++++.
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred cceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999998853
No 357
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=93.90 E-value=0.039 Score=53.29 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|..|+..|..|++ |++|++++++.
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 379999999999999999999 99999999854
No 358
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=93.90 E-value=0.057 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
|++|+|||||..|..+|+.+.+.|++|.++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999998653
No 359
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=93.87 E-value=0.053 Score=52.24 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5689999999999999999999999999998854
No 360
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=93.81 E-value=0.039 Score=54.67 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~ 60 (491)
+++|+|||+|..|+..|..|+++ |++|+++|++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~ 43 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN 43 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 46899999999999999999998 7899999975
No 361
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=93.81 E-value=0.043 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
.+++|.|||.|..|...|..|++.|+ +|++++++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 35789999999999999999999999 99999985
No 362
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=93.80 E-value=0.059 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+++|.|||.|..|...|..|+++|++|++++++.
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999875
No 363
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=93.71 E-value=0.064 Score=49.73 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~ 61 (491)
++|+|||+|..|.+.|..|++. |++|+++|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4799999999999999999985 78999999864
No 364
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=93.68 E-value=0.03 Score=55.13 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..|+|+|+|+|-.|.+.|..|.+.|++|+|+|++.
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 45689999999999999999999999999999965
No 365
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=93.68 E-value=0.068 Score=51.23 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46689999999999999999999999999999854
No 366
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=93.67 E-value=0.046 Score=51.36 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
++|+|||+|..|...|..|++.|++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 3699999999999999999999999999988
No 367
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=93.66 E-value=0.073 Score=47.51 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC----cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF----KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~----~V~vlE~~~ 61 (491)
+++|.|||+|..|.+.|..|.+.|+ +|++++++.
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 4679999999999999999999998 999998854
No 368
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=93.66 E-value=0.074 Score=49.00 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=31.5
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIG-AGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIG-aGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+..+|+||| +|..|.+.|..|++.|++|++++++.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 345799999 99999999999999999999998754
No 369
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=93.64 E-value=0.076 Score=49.36 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
.++|+|||||..|.+.|+.|+..|+ +|.++|...
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 5689999999999999999999998 999999855
No 370
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=93.62 E-value=0.075 Score=48.64 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=31.1
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.|||+ |..|...|..|.+.|++|++++++.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 468999999 9999999999999999999998753
No 371
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=93.57 E-value=0.047 Score=54.81 Aligned_cols=35 Identities=40% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~ 389 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 389 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence 46899999999999999999999999999998654
No 372
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=93.55 E-value=0.043 Score=52.34 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|+|||+|..|.+.|..|++.|++|++++++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 89999999999999999999999999998853
No 373
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=93.54 E-value=0.053 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 197 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE 197 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence 46799999999999999999999999999998654
No 374
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.076 Score=52.68 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+..+|.|||+|..|...|..|+++|++|++++++.
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 55689999999999999999999999999999865
No 375
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=93.47 E-value=0.048 Score=52.18 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G-------~~V~vlE~~~~ 62 (491)
+++|+|||+|..|.+.|..|++.| ++|++++++..
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 457999999999999999999999 99999998653
No 376
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=93.45 E-value=0.041 Score=51.21 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-----C-CcEEEEee
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA-----S-FKVVLLES 59 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~-----G-~~V~vlE~ 59 (491)
+++|+|||+|..|...|..|++. | ++|+++++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 35899999999999999999999 9 99999987
No 377
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=93.43 E-value=0.062 Score=50.70 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=31.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
-...+|+|+|||.+|..+|..|...|. +|+++|++
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 346789999999999999999999998 89999985
No 378
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=93.39 E-value=0.086 Score=48.82 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
..+|+|||+|..|.+.|+.|++.|+ +|+++|.+
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4689999999999999999999999 99999985
No 379
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=93.38 E-value=0.077 Score=46.03 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.5
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 29 ~dv~IIG-aGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
++|+||| +|..|...|..|.+.|++|++++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3699999 9999999999999999999999874
No 380
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=93.36 E-value=0.063 Score=48.98 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
|+++|+|+|||..|...+..|.++|++|+++.++.
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 45789999999999999999999999999998854
No 381
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=93.36 E-value=0.071 Score=48.01 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDAS----FKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G----~~V~vlE~~~~ 62 (491)
+++|.|||+|..|.+.|..|.+.| ++|++++++..
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~ 42 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK 42 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence 458999999999999999999999 79999998654
No 382
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=93.30 E-value=0.083 Score=55.06 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 345 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence 4679999999999999999999999999999864
No 383
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=93.26 E-value=0.08 Score=49.41 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC----CcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDAS----FKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G----~~V~vlE~~~ 61 (491)
++++|.|||+|..|.+.|..|.+.| ++|++++++.
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 3568999999999999999999999 7999998854
No 384
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=93.24 E-value=0.043 Score=53.09 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEe
Q 011202 28 SPSVIVIGAGMAGVAAARALHD-ASFKVVLLE 58 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~-~G~~V~vlE 58 (491)
+++|+|||+|..|.+.|..|++ .|++|++++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~ 33 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT 33 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 3589999999999999999998 599999998
No 385
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=93.22 E-value=0.082 Score=48.82 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|.+.|.+|+++++.+.
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~ 181 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE 181 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 46799999999999999999999999999998654
No 386
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=93.21 E-value=0.073 Score=52.66 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~-G~~V~vlE~~~~~G 64 (491)
..+++|||+|.+|+-+|..|++. |.+|+++|+.+++.
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l 196 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM 196 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc
Confidence 46899999999999999999999 99999999977543
No 387
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=93.21 E-value=0.027 Score=49.40 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+.++|.|||+|..|-+.|..|.++|++|+++++.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence 3468999999999999999999999999999874
No 388
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=93.18 E-value=0.092 Score=49.85 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|+|+|..|+.+|..|...|.+|++++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999854
No 389
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=93.16 E-value=0.079 Score=50.20 Aligned_cols=40 Identities=33% Similarity=0.660 Sum_probs=35.4
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCC---cEEEEeeCC-CCcce
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASF---KVVLLESRD-RVGGR 66 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~---~V~vlE~~~-~~GG~ 66 (491)
...+|+|||| |..|+.|+..+...|. +|+++|.+. .-||+
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~ 257 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP 257 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence 5678999999 9999999999999997 999999975 45665
No 390
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=93.16 E-value=0.073 Score=50.16 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
...+|+|+|||.+|..+|..|...|. +|+|+|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 56789999999999999999999998 79999985
No 391
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=93.14 E-value=0.095 Score=50.65 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||.|-.|...|..|.+.|++|+|+|++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4579999999999999999999999999999965
No 392
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=93.10 E-value=0.091 Score=48.84 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
+++|+|||+|-.|.+.|+.|+..|. +|.++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 5689999999999999999999987 899999853
No 393
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=93.05 E-value=0.092 Score=52.13 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+++.
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 227 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL 227 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 5689999999999999999999999999999977643
No 394
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=93.05 E-value=0.078 Score=52.40 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+++|.|||+|..|...|..|+++|++|++++++.
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~ 48 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR 48 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 35689999999999999999999999999999863
No 395
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=93.04 E-value=0.072 Score=46.65 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++++|+|+|| |..|...+..|.+.|++|+++.++.
T Consensus 2 ~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp -CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 34578999996 9999999999999999999999864
No 396
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=93.02 E-value=0.099 Score=49.79 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999854
No 397
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=93.01 E-value=0.073 Score=49.35 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G--~~V~vlE~~~ 61 (491)
++|+|||+|-.|.+.|..|+++| .+|+++|++.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 57999999999999999999999 6899999854
No 398
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=92.99 E-value=0.096 Score=47.72 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++|.|||+|..|.+.|..|.+.|+ +|++++++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 479999999999999999999998 899998753
No 399
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=92.98 E-value=0.081 Score=47.58 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.|||+|..|...|..|.+.|++|.+++++.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~ 36 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 36 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence 4689999999999999999999999999998753
No 400
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=92.90 E-value=0.095 Score=47.70 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|..|.+.|..|.+.|++|++++++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 369999999999999999999999999998753
No 401
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=92.85 E-value=0.09 Score=48.31 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 69999999999999999999999999998854
No 402
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=92.84 E-value=0.079 Score=47.73 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
++|.|||+|..|.+.|..|.+.| ++|++++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~ 34 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence 36999999999999999999999 9999998853
No 403
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=92.83 E-value=0.08 Score=48.45 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|.|||+|..|...|..|.+ |++|++++++.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 479999999999999999999 99999998854
No 404
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=92.83 E-value=0.11 Score=47.06 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+.++|+|+|-.|.++|..|++.|.+|+|+.++.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4679999999999999999999999999998763
No 405
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=92.81 E-value=0.12 Score=48.46 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|.|||.|..|-+.|..|.+.|++|.+++++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999854
No 406
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=92.81 E-value=0.078 Score=49.36 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++|+|||+|-.|.+.|..|++.|+ +|+++|++.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 379999999999999999999998 999999853
No 407
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=92.72 E-value=0.1 Score=51.66 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|.|||+|..|...|..|+++|++|++++++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~ 35 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 408
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=92.72 E-value=0.12 Score=49.44 Aligned_cols=35 Identities=37% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....|+|||+|..|+.+|..|...|.+|++++++.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35689999999999999999999999999999753
No 409
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=92.71 E-value=0.1 Score=48.61 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
..++|+|||+|..|.+.|+.|+..|. +|.++|.+
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 35689999999999999999999987 89999974
No 410
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=92.69 E-value=0.13 Score=46.24 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.++++|||+|-+|-++|+.|.+.|.+|+|+.|+..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ 152 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR 152 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56899999999999999999999999999988653
No 411
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=92.66 E-value=0.15 Score=47.41 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
+..+|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~ 56 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME 56 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence 45789999999999999999999987 899999743
No 412
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=92.54 E-value=0.07 Score=49.04 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.|||+|..|...|..|.+.|++|++++ +.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~ 35 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG 35 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence 3589999999999999999999999999998 54
No 413
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=92.50 E-value=0.16 Score=46.28 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|+|.|+|..|...+..|.+.|++|+++.++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999998864
No 414
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=92.40 E-value=0.15 Score=47.38 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
.++|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 4689999999999999999999988 999999865
No 415
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=92.37 E-value=0.1 Score=54.36 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.++|.|||+|..|...|..|+++|++|+++|++.
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 347 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 347 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence 35679999999999999999999999999999864
No 416
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=92.36 E-value=0.1 Score=47.85 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++|+|||||..|.+.|+.|++.|+ +|.++|...
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~ 35 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 479999999999999999999988 899999854
No 417
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=92.35 E-value=0.11 Score=51.27 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|.|||+|..|...|..|+++|++|++++++.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~ 34 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999853
No 418
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=92.33 E-value=0.064 Score=50.82 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-------CcEEEEeeCCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G-------~~V~vlE~~~~ 62 (491)
++|+|||+|..|.+.|..|++.| ++|++++++..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 58999999999999999999999 89999998654
No 419
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=92.32 E-value=0.15 Score=46.35 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF---KVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~---~V~vlE~~~ 61 (491)
+++|.|||+|-.|.+.|..|.+.|+ +|++++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 4679999999999999999999998 899999855
No 420
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=92.29 E-value=0.1 Score=50.52 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.-|||.|..|+..|..|+++|++|+++|++.
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~ 44 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ 44 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3479999999999999999999999999999864
No 421
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=92.28 E-value=0.15 Score=47.07 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|.|||+|-.|..+|..|...|++|++++++.
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45689999999999999999999999999999864
No 422
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=92.25 E-value=0.12 Score=50.80 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
.+.|+|||+|-+|...|..|.+.|.+|+|++..
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 467999999999999999999999999999975
No 423
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=92.22 E-value=0.12 Score=50.79 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHH--------------------HCCC-cEEEEeeCCC
Q 011202 28 SPSVIVIGAGMAGVAAARALH--------------------DASF-KVVLLESRDR 62 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~--------------------~~G~-~V~vlE~~~~ 62 (491)
..+|+|||+|.+|+-+|..|+ +.|. +|+|+++.+.
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 468999999999999999999 5687 6999998653
No 424
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=92.21 E-value=0.095 Score=47.91 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+|+|||+|.+|+-.|..|++.| +|+++++.+
T Consensus 141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~ 173 (297)
T 3fbs_A 141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI 173 (297)
T ss_dssp TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence 468999999999999999999999 999998744
No 425
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=92.09 E-value=0.16 Score=46.56 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.|.|||+|-.|..+|..|...|.+|++++++.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 45689999999999999999999999999999864
No 426
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=92.05 E-value=0.12 Score=47.55 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++.+|+|||||..|...|+.|+.+|. +|.++|.+.
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 45789999999999999999999998 899999865
No 427
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=92.02 E-value=0.12 Score=46.86 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.++|||+|-+|.+.|+.|++.|.+|+|+.|+.
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34679999999999999999999999999998863
No 428
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=92.00 E-value=0.17 Score=47.49 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|||+|..|.+.|..|.+.|++|++++++.
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~ 49 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG 49 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence 469999999999999999999999999998854
No 429
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=92.00 E-value=0.12 Score=46.11 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
..+|+|||+|-.|..+|..|++.|. +|+|+|..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4579999999999999999999998 79999983
No 430
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=91.99 E-value=0.15 Score=46.86 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..+.|+|||+|-+|..+|+.|.+.|. +|+|+.++.
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 34679999999999999999999998 899998863
No 431
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=91.95 E-value=0.12 Score=47.68 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
++|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 479999999999999999999887 899999855
No 432
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=91.83 E-value=0.21 Score=46.41 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
.....+|+|||+|..|.+.|+.|+.+|. ++.++|.+
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 3456789999999999999999999987 79999974
No 433
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=91.70 E-value=0.12 Score=46.54 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~-V~vlE~~~ 61 (491)
+++|.|||+|..|...|..|++.|++ |.+++++.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~ 44 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE 44 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 35799999999999999999999998 89998753
No 434
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=91.69 E-value=0.13 Score=47.67 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=31.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 25 ~~~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
|++.++|+|||||-.|.+.|+.|+..+. ++.++|.+
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~ 39 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 4556799999999999999999998876 79999874
No 435
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=91.68 E-value=0.13 Score=46.36 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~ 59 (491)
+|.|||+|..|...|..|++.|++|+++++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~ 31 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE 31 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence 699999999999999999999999999765
No 436
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=91.66 E-value=0.19 Score=43.54 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.8
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 36999996 9999999999999999999998854
No 437
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=91.62 E-value=0.18 Score=44.34 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.+.|+|.|| |..|...|..|.+.|++|+++.++.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 4568999998 9999999999999999999999864
No 438
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=91.59 E-value=0.24 Score=43.07 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHH-HCCCcEEEEeeCC
Q 011202 28 SPSVIVIGA-GMAGVAAARALH-DASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGa-GisGL~aA~~L~-~~G~~V~vlE~~~ 61 (491)
++.|+|+|| |-.|...|..|+ +.|++|+++.++.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence 344999995 999999999999 8999999998864
No 439
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=91.51 E-value=0.15 Score=46.92 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=30.3
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAG-MAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaG-isGL~aA~~L~~~G~~V~vlE~~ 60 (491)
...+++|||+| +.|..+|..|...|.+|+|++++
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~ 210 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 210 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence 56789999999 77999999999999999998664
No 440
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=91.41 E-value=0.18 Score=46.84 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~~ 61 (491)
+..+|+|||+|..|-+.|+.|+..|. +|.++|.+.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 45689999999999999999998875 799999853
No 441
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=91.38 E-value=0.23 Score=45.57 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=30.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
|+|+|.|| |..|-..+..|.++|++|+++-|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 57999998 99999999999999999999977543
No 442
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=91.37 E-value=0.08 Score=46.78 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|+|+|-.|...|..|.+.|+ |+++|++.
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~ 41 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN 41 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence 45679999999999999999999999 99999865
No 443
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=91.37 E-value=0.13 Score=51.20 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~-aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 56 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 56 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence 3468999999999998 6999999999999999754
No 444
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=91.35 E-value=0.15 Score=53.51 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIG--AGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIG--aGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+||| ||.+|+-+|..|++.|.+|+|+++.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 346899999 99999999999999999999999966
No 445
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=91.33 E-value=0.21 Score=43.46 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.9
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 36999998 9999999999999999999998853
No 446
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=91.24 E-value=0.084 Score=49.07 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=41.7
Q ss_pred cccchhhhhhhhhhhccccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 3 SASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
+|.--|-+|-+++.+....-. .=...+|+|||+|=.|..+|..|++.|. +++|+|.
T Consensus 10 ~~~~lnl~lm~wRll~~~g~~-kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~ 66 (340)
T 3rui_A 10 QSVDLNLKLMKWRILPDLNLD-IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 66 (340)
T ss_dssp HHHHHHHHHHHHHTCTTCCHH-HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhhcchhhHH-HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 444556667777765432211 1146789999999999999999999998 6999988
No 447
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=91.24 E-value=0.18 Score=46.80 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
...+|+|||+|..|.+.|+.|+..|. ++.++|.+
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 45689999999999999999999887 79999974
No 448
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=91.21 E-value=0.18 Score=49.69 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.|||+|..|...|..|+++|++|++++++.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 38 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT 38 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 3689999999999999999999999999999853
No 449
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=91.17 E-value=0.16 Score=46.13 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.++|+|||+|-.|.+.|..|.+.|.+|+|++++.
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~ 162 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK 162 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4579999999999999999999999999998863
No 450
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=91.16 E-value=0.25 Score=42.18 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=30.6
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 57999999 9999999999999999999998854
No 451
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=91.16 E-value=0.17 Score=47.55 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
...+|+|||+|.+|+-+|..|++.| +|+++++..
T Consensus 162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 3568999999999999999999998 699998853
No 452
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=91.13 E-value=0.18 Score=46.34 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++|.+||=|..|...|..|.++|++|+|++++.
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~ 36 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 5689999999999999999999999999999864
No 453
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=90.97 E-value=0.12 Score=56.01 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCc
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~~G 64 (491)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~ 320 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS 320 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence 3579999999999999999999999999999987654
No 454
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=90.31 E-value=0.043 Score=47.28 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+.++|.|||+|-.|...|..|.+.|++|++++++.
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 52 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNP 52 (201)
Confidence 45679999999999999999999999999998854
No 455
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=90.89 E-value=0.26 Score=46.09 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|.|||.|-.|...|..|+..|++|++++++.
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~ 183 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR 183 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence 45689999999999999999999999999999855
No 456
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=90.82 E-value=0.18 Score=50.90 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|+|||+|.+|+-.|..|++.|.+|+|+++.+
T Consensus 185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~ 219 (542)
T 1w4x_A 185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219 (542)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence 35789999999999999999999999999999865
No 457
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=90.76 E-value=0.24 Score=48.36 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.|+|+|+|-.|..+|..|+..|.+|++.|.++
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45689999999999999999999999999998853
No 458
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=90.76 E-value=0.26 Score=46.09 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 28 SPSVIVIGA-GMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGa-GisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
+++|+|||+ |..|.++|+.|...|. +|.++|..
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 568999998 9999999999999984 79999974
No 459
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=90.60 E-value=0.2 Score=45.43 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..++++|||+|-+|.++|+.|.+.|. +|+|+.|+.
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 151 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTM 151 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35679999999999999999999998 899998864
No 460
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=90.54 E-value=0.31 Score=43.49 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
+++|||+|-+|-++++.|.+.|. +|+|+.|+.
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~ 142 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI 142 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 89999999999999999999998 899999864
No 461
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=90.45 E-value=0.22 Score=45.54 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~--G~~V~vlE~~~ 61 (491)
+++|.|||+|..|.+.|..|.+. |++|++++++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 41 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD 41 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 45899999999999999999988 67899998753
No 462
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=90.39 E-value=0.27 Score=51.11 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
-.+|+|||||..|-.-|+.++.+|++|+++|.++
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~ 349 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 349 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence 4689999999999999999999999999999865
No 463
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=90.23 E-value=0.24 Score=46.01 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
+++|+|||||-.|.+.|+.|+.+|. .|.++|.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4689999999999999999998885 79999874
No 464
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=90.22 E-value=0.22 Score=54.25 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
.+|+|||||.+|+-+|..|.+.|. +|+|+++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 489999999999999999999997 899999876
No 465
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=90.20 E-value=0.32 Score=45.59 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
+++.|+|.|| |..|...+..|.+.|++|+++.+.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568999998 999999999999999999999875
No 466
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=90.19 E-value=0.3 Score=45.57 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..++|.|||.|-.|...|..|+..|++|++++++.
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~ 188 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 188 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35689999999999999999999999999999854
No 467
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=90.18 E-value=0.32 Score=43.76 Aligned_cols=32 Identities=38% Similarity=0.498 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 30 dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+|+|||+|-.|.+.|..|.+.|++|+|++++.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~ 149 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP 149 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999999999999999999999999999864
No 468
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=90.08 E-value=0.34 Score=44.76 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.0
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
+++.|+|.|| |..|...+..|.+.|++|+++.++..
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 3578999999 99999999999999999999988654
No 469
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=90.06 E-value=0.34 Score=44.71 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~ 60 (491)
..+.++|+|+|-+|.++|+.|++.|. +|+|+.|+
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence 45689999999999999999999998 89999886
No 470
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=90.05 E-value=0.31 Score=44.77 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++.|+|+|| |..|...+..|.+.|++|+++.|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 467999998 9999999999999999999998854
No 471
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=90.03 E-value=0.26 Score=48.40 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--------------------CC-cEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDA--------------------SF-KVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~--------------------G~-~V~vlE~~~~ 62 (491)
...+|+|||+|.+|+-+|..|++. |. +|+|+++.+.
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence 356899999999999999999974 64 8999998654
No 472
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=90.01 E-value=0.23 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~ 59 (491)
...+|+|||+|=.|-.+|.+|++.|. +++|+|.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~ 68 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDY 68 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECC
Confidence 35689999999999999999999997 7999988
No 473
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=89.95 E-value=0.34 Score=43.77 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..+.++|+|+|-+|.++|+.|++.|. +|+|+.|+.
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 46789999999999999999999996 899998754
No 474
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=89.94 E-value=0.26 Score=47.16 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.|+|||.|..|..+|..|...|.+|+++|+++
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp 253 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP 253 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 45789999999999999999999999999999754
No 475
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=89.86 E-value=0.34 Score=47.65 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
....|+|||+|..|..+|..|...|.+|+++|+++
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~ 307 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP 307 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999999999999999999999999854
No 476
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=89.85 E-value=0.36 Score=44.99 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
..++|.|||.|-.|...|..|...|++|++++++..
T Consensus 163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~ 198 (333)
T 3ba1_A 163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK 198 (333)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence 356799999999999999999999999999998653
No 477
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=89.85 E-value=0.33 Score=45.79 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
..+.|+|+|+|-.|..+|..|.+.|.+|++.|..
T Consensus 172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~ 205 (364)
T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN 205 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999864
No 478
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=89.82 E-value=0.48 Score=45.14 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+.+.|+|||+|-.|...|..+.+.|++|.+++..+
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~ 45 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE 45 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 356789999999999999999999999999998754
No 479
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=89.81 E-value=0.21 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=30.6
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC--CcEEEEeeCCC
Q 011202 27 RSPSVIVIG-AGMAGVAAARALHDAS--FKVVLLESRDR 62 (491)
Q Consensus 27 ~~~dv~IIG-aGisGL~aA~~L~~~G--~~V~vlE~~~~ 62 (491)
++++|+||| +|..|.+.|..|.+.| .+|.++|....
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~ 45 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA 45 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 456899999 7999999999999998 78999997543
No 480
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=89.79 E-value=0.35 Score=43.87 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..+.++|||+|-+|.+.|+.|++.|. +|+|+.|+.
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 45689999999999999999999996 899998854
No 481
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=89.75 E-value=0.31 Score=44.16 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
...+++|||+|-+|-++|+.|.+.|. +|+|+.|..
T Consensus 121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 45689999999999999999999998 899998854
No 482
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=89.74 E-value=0.36 Score=43.88 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
..+.++|+|+|-+|.++|+.|++.|. +|+|+.|+.
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 45689999999999999999999998 699998864
No 483
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=89.72 E-value=0.26 Score=45.02 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 011202 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (491)
Q Consensus 28 ~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~ 60 (491)
.+.++|+|+|-.|.+.|..|++.| +|+|+.++
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~ 159 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 159 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence 457999999999999999999999 99999875
No 484
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=89.71 E-value=0.27 Score=45.54 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCC--CcEEEEeeCC
Q 011202 29 PSVIVIGA-GMAGVAAARALHDAS--FKVVLLESRD 61 (491)
Q Consensus 29 ~dv~IIGa-GisGL~aA~~L~~~G--~~V~vlE~~~ 61 (491)
++|+|||| |..|.+.|+.|++.| .+|.++|...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~ 36 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 47999998 999999999999988 5899999865
No 485
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=89.66 E-value=0.4 Score=44.80 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 25 QARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 25 ~~~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
|.+++.|+|.|| |..|...|..|.+.|++|+++.++..
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 40 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN 40 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 445678999996 99999999999999999999988543
No 486
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=89.62 E-value=0.25 Score=49.03 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~-aA~~L~~~G~~V~vlE~~~ 61 (491)
+..++|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 53 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 53 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 34567999999999998 8999999999999999855
No 487
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=89.49 E-value=0.38 Score=44.80 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCCC
Q 011202 25 QARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (491)
Q Consensus 25 ~~~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~~ 62 (491)
.+++++|+|.|| |..|...+..|.+.|++|+++.+...
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 49 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 49 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 457889999997 99999999999999999999998653
No 488
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=89.39 E-value=0.24 Score=46.20 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCC-------cEEEEeeC
Q 011202 26 ARSPSVIVIGA-GMAGVAAARALHDASF-------KVVLLESR 60 (491)
Q Consensus 26 ~~~~dv~IIGa-GisGL~aA~~L~~~G~-------~V~vlE~~ 60 (491)
.+.++|+|+|| |..|-..+..|.+.|+ +|.++|..
T Consensus 2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~ 44 (327)
T 1y7t_A 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP 44 (327)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence 34568999998 9999999999999986 79999874
No 489
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=89.35 E-value=0.56 Score=44.01 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++.|+|.|| |..|...+..|.++|++|+++.+..
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 59 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS 59 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3568999996 9999999999999999999999854
No 490
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=89.29 E-value=0.37 Score=44.38 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++.|+|+|| |..|...+..|.+.|++|+++.|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 467999997 9999999999999999999998854
No 491
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=89.28 E-value=0.44 Score=44.47 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=31.3
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
++++|+|.|| |..|...+..|.+.|++|+++.++.
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCh
Confidence 3458999996 9999999999999999999999865
No 492
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=89.24 E-value=0.34 Score=46.66 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~-~V~vlE~~~ 61 (491)
....|+|||+|-.|..+|..|...|. +|++++++.
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~ 201 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 201 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 45679999999999999999999998 899999864
No 493
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=89.19 E-value=0.36 Score=44.21 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHCC-CcEEEEeeCC
Q 011202 25 QARSPSVIVIGA-GMAGVAAARALHDAS-FKVVLLESRD 61 (491)
Q Consensus 25 ~~~~~dv~IIGa-GisGL~aA~~L~~~G-~~V~vlE~~~ 61 (491)
|++++.|+|.|| |..|...+..|.+.| ++|.++.++.
T Consensus 2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~ 40 (299)
T 2wm3_A 2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNP 40 (299)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCC
Confidence 334568999999 999999999999988 9999998864
No 494
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=89.09 E-value=0.38 Score=44.50 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.0
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++.|+|+|| |..|...+..|.+.|++|+++.++.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 4567999997 9999999999999999999999864
No 495
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=89.09 E-value=0.38 Score=44.95 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
..+.|.|||.|-.|...|..|+..|++|++++++.
T Consensus 145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~ 179 (333)
T 2d0i_A 145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR 179 (333)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 45679999999999999999999999999999855
No 496
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=89.07 E-value=0.35 Score=44.63 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=28.9
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 28 ~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
.+.|+|.|| |..|...+..|.+.|++|+++.++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR 36 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence 457999998 9999999999999999999998754
No 497
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=88.97 E-value=0.44 Score=44.08 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEeeCC
Q 011202 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (491)
Q Consensus 27 ~~~dv~IIGa-GisGL~aA~~L~~~G~~V~vlE~~~ 61 (491)
+++.|+|+|| |..|...+..|.+.|++|+++.|+.
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence 4457999997 9999999999999999999999865
No 498
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=88.92 E-value=0.35 Score=44.97 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 011202 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (491)
Q Consensus 27 ~~~dv~IIGaGisGL~aA~~L~~~G~--~V~vlE~~ 60 (491)
++++|+|||||-.|.+.|+.|+..+. .+.++|.+
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 55789999999999999999998876 79999874
No 499
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=88.91 E-value=0.25 Score=48.76 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEeeCC
Q 011202 26 ARSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (491)
Q Consensus 26 ~~~~dv~IIGaGisGL~-aA~~L~~~G~~V~vlE~~~ 61 (491)
+..++|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 16 ~~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~ 52 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 52 (475)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred ccCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 34567999999999998 8999999999999999855
No 500
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=88.91 E-value=0.41 Score=43.42 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEee
Q 011202 27 RSPSVIVIGAG-MAGVAAARALHDASFKVVLLES 59 (491)
Q Consensus 27 ~~~dv~IIGaG-isGL~aA~~L~~~G~~V~vlE~ 59 (491)
..++++|||+| +.|.-+|..|.+.|..|+|+.+
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs 197 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 197 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEEC
Confidence 56789999999 6899999999999999999964
Done!