BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011203
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 551 bits (1419), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/474 (57%), Positives = 336/474 (70%), Gaps = 13/474 (2%)
Query: 11 KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
KVP L+ +NR+++ LR++ + + V+LQGGEE RYCTD LFRQES+F +
Sbjct: 18 KVPLALFALNRQRLCERLRKNPAVQAGSI---VVLQGGEETQRYCTDTGVLFRQESFFHW 74
Query: 71 LFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIV 130
FGV EPG YG ID+ TGKS LF PRLP +A W+GKI +F+EKY V+ V Y DEI
Sbjct: 75 AFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIA 134
Query: 131 GVLQGHYKEPGKP-LLFLLHGLNTDSNNFSKPAQFE----FETELNTLHPILSECRVFKS 185
VL KP +L L G+NTDS + + A F+ FE LHP + ECRVFK+
Sbjct: 135 SVLTSQ-----KPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKT 189
Query: 186 DHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATG 245
D EL ++++ N ISSEAH EVMK +VGMKEY++ES+F H+ Y GG RH SYTCIC +G
Sbjct: 190 DMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSG 249
Query: 246 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 305
ENSAVLHYGHA APNDRT ++GDM L DMG EY + SDITCSFP NGKFT+DQ +Y A
Sbjct: 250 ENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEA 309
Query: 306 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 365
VL++ AV+ AMKPGV W DMH+LA++I LE L G++ G+VD M+ A LGAVFMPHGL
Sbjct: 310 VLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGL 369
Query: 366 GHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMEN 425
GHFLGID HD GGYP+G ER EPGL+SLRT R LQ MV+TVEPG YFID LL A+ +
Sbjct: 370 GHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALAD 429
Query: 426 ESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAGA 479
+ + FFN EV+ RF+ FGGVRIE DV+VT +G + +T VPR + +IEA MAG
Sbjct: 430 PARASFFNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEACMAGC 483
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 218/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 218/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 218/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWYGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TV PG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVAPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
Y N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 AY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D D G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVADVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TV PG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVAPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+ G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y IT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 217/469 (46%), Gaps = 61/469 (13%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 298
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F GL H+LG+
Sbjct: 299 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMAGLSHWLGL 358
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 359 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 396
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 397 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 437
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 216/469 (46%), Gaps = 60/469 (12%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEFETELNTLHPILSECRVFKSDHELAL 191
QG Y + L L S N + PA + P++ E R+FKS E+A+
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT------MIDWRPVVHEMRLFKSPEEIAV 183
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVL 251
++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN +L
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 252 HYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHN 311
HY R DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL++
Sbjct: 243 HYTENECXEMR---DGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 299
Query: 312 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGI 371
+ +PG +++ +I++ L K G++ G+VDE++A F HGL +LG+
Sbjct: 300 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLGL 359
Query: 372 DTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKF 431
D HD G Y + R EPG MV+TVEPG Y VP
Sbjct: 360 DVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPE--------- 397
Query: 432 FNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 479
+++ G+RIE D+++T G++N+T SV ++ +IEA+M A
Sbjct: 398 -------QYRGI-GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 438
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 127/454 (27%), Positives = 210/454 (46%), Gaps = 74/454 (16%)
Query: 20 NREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGF 79
NRE+++N+L P +L G+ H + +++ Y+ G+ EP
Sbjct: 9 NRERLVNTL---------PDESITILFAGQAPHXSADAHYKFVPNRNFY-YVTGIDEPNV 58
Query: 80 YGAIDIATGKSI---LFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGH 136
+ G S+ LF + P W+GK ++ + V Y D
Sbjct: 59 IFXLK-KFGNSVEETLFIEKSDPVXEKWVGKTVSNEEAEKISGIKKVIYLDSFEKTXSNI 117
Query: 137 YKEPGKPLLFL------LHGLNTDSNNFSKPAQFEF-ETELNTLHPILSECRVFKSDHEL 189
+ L+L G T + F+K + ++ + ++P + E RVFK+D E+
Sbjct: 118 FFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEEI 177
Query: 190 ALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSA 249
+I+ A ++ + V+K + EY++E+ F T G +H ++ I A+G+N+
Sbjct: 178 EIIKEAIAVTKDGIYNVLKHAKADXXEYELEAQF-DFTLKSSGIKHHAFNTILASGKNAT 236
Query: 250 VLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKA 309
VLHY ND ++GD+ LLD+GA+ +Y +DI+ +FP NG F+S Q IYN VL A
Sbjct: 237 VLHY----EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNA 292
Query: 310 HNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFL 369
+KPG+ + +++ A+K++ E K G++ DE ++ + HG+ HFL
Sbjct: 293 LKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLI--QEDEELSK-----YYYHGVSHFL 345
Query: 370 GIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTS 429
G+DTHD G Y R L+E VIT+EPG Y +E ES
Sbjct: 346 GLDTHDVGTYKD----------------RVLEEGXVITIEPGLY---------IEEESI- 379
Query: 430 KFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 463
G+RIE D+LVT +G +N++
Sbjct: 380 ---------------GIRIEDDILVTKDGHENLS 398
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 153/291 (52%), Gaps = 18/291 (6%)
Query: 181 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTC 240
R +K+D+EL ++ AN ++ H + R G E+ + + + G YT
Sbjct: 157 RAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASRQ--GDNDVPYTS 214
Query: 241 ICATGENSAVLHY--GHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 297
I A E++++LHY AP + R+F L+D GA Y Y +DIT ++ G S
Sbjct: 215 IVALNEHASILHYMQXDTVAPKESRSF------LIDAGANYHGYAADITRTYAQEGVHNS 268
Query: 298 D--QSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 355
+ LI AV K +++++KPGV + D+H LA I + L G++ E++
Sbjct: 269 AMFRDLI-QAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEMG 327
Query: 356 LGAVFMPHGLGHFLGIDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVITVEPGC 412
+ F PHG+GHFLG+ HD GG +GT + LR R ++ R V T+EPG
Sbjct: 328 ITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEARQVFTIEPGL 387
Query: 413 YFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 463
YFID+LL ++ SK+ N + I +K FGG+RIE +++V + ++NMT
Sbjct: 388 YFIDSLLR-DLKATPASKYINWDTIDAYKPFGGIRIEDNIIVHRDKNENMT 437
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 151/292 (51%), Gaps = 23/292 (7%)
Query: 181 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTC 240
R +K+ +ELA ++ AN I+ + H G E++++ +L T Y
Sbjct: 157 RAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQH--SENDNPYGN 214
Query: 241 ICATGENSAVLHYGH---AAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 297
I A EN A+LHY H A R+F L+D GA + Y +DIT ++ G+
Sbjct: 215 IVALNENCAILHYTHFDRVAPATHRSF------LIDAGANFNGYAADITRTYDFTGEGEF 268
Query: 298 DQSLIYNAVLKAHN-AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 356
+ + A +K H A++N + PG + ++H + + ++L ++ + DE++A +
Sbjct: 269 AELV---ATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGI 325
Query: 357 GAVFMPHGLGHFLGIDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVITVEPGCY 413
+ F PHGLGH +G+ HD GG+ +G + G LR R+++ V T+EPG Y
Sbjct: 326 TSTFFPHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLY 385
Query: 414 FIDALL--VPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 463
FID+LL + A +N ++ N + + K FGG+RIE +++V + +NMT
Sbjct: 386 FIDSLLGDLAATDN---NQHINWDKVAELKPFGGIRIEDNIIVHEDSLENMT 434
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 65/302 (21%)
Query: 169 ELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTY 228
E + ++ + R+ KS+ E+ +I+ A +I+ +A + +++ G KE ++ + +
Sbjct: 113 EFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMK 172
Query: 229 MYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCS 288
M G ++ I A+G SA+ H +D+ E GD+ ++D+GA YQ Y SDIT +
Sbjct: 173 M-NGAEKPAFDTIIASGYRSALPH----GVASDKRIERGDLVVIDLGALYQHYNSDITRT 227
Query: 289 FPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNV 348
V G Q IY VL+A + + KPG+ ++ +A II
Sbjct: 228 IVV-GSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNII-------------- 272
Query: 349 DEMMAARLG-AVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVIT 407
A G + H LGH +G++ H+ +P+ ++ + TV L+E MVIT
Sbjct: 273 -----AEYGYGEYFNHSLGHGVGLEVHE---WPRVSQYDE--------TV--LREGMVIT 314
Query: 408 VEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPR 467
+EPG Y +P + GGVRIE +L+T NGSK +T R
Sbjct: 315 IEPGIY------IPKI--------------------GGVRIEDTILITKNGSKRLTKTER 348
Query: 468 EI 469
E+
Sbjct: 349 EL 350
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 146/313 (46%), Gaps = 66/313 (21%)
Query: 157 NFSKPAQFEFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKE 216
NF + + + E + ++ + R+ K+ E+ +I+ A +I+ +A + +++ G +E
Sbjct: 101 NFKEKSNVK---EFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKRE 157
Query: 217 YQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGA 276
++ + + M G ++ I A+G SA+ H +D+ E GD+ ++D+GA
Sbjct: 158 REVAAKVEYLMKM-NGAEKPAFDTIIASGHRSALPH----GVASDKRIERGDLVVIDLGA 212
Query: 277 EYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 336
Y Y SDIT + V G Q IY VL+A + A KPG+ ++ +A +II E
Sbjct: 213 LYNHYNSDITRTIVV-GSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKE 271
Query: 337 SLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRT 396
G D + H LGH +G++ H+ +P+ ++ + T
Sbjct: 272 --------YGYGD----------YFIHSLGHGVGLEIHE---WPRISQYDE--------T 302
Query: 397 VRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTA 456
V L+E MVIT+EPG Y +P + GGVRIE VL+T
Sbjct: 303 V--LKEGMVITIEPGIY------IPKL--------------------GGVRIEDTVLITE 334
Query: 457 NGSKNMTSVPREI 469
NG+K +T RE+
Sbjct: 335 NGAKRLTKTEREL 347
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 63/294 (21%)
Query: 176 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 235
++ + R+ K+D E+ +++ A I+ A ++ R G+ E ++ S L G
Sbjct: 123 LVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEV-SNELEFFMRKQGATS 181
Query: 236 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 295
S+ I A+G SA+ H +++ E GD LD GA Y+ Y SDIT + V G+
Sbjct: 182 SSFDIIVASGLRSALPH----GVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAV-GEP 236
Query: 296 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 355
+ IYN VL+A +N +K G+ + L I E KG
Sbjct: 237 SDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITE---KG-------------- 279
Query: 356 LGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFI 415
G F H GH +G++ H+ G ++ EPG M +TVEPG Y
Sbjct: 280 YGEYF-GHSTGHGIGLEIHEAPGLAFRSDTVLEPG-------------MAVTVEPGIY-- 323
Query: 416 DALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREI 469
+P + GGVRIE D++VT+ G++ +T P+E+
Sbjct: 324 ----IPGI--------------------GGVRIEDDIIVTSEGNEVITKSPKEL 353
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 63/293 (21%)
Query: 177 LSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHC 236
+ + R+ K + E+ I+ A +IS A +E +++ R GM E ++ ++ L +T G
Sbjct: 127 VKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAAL-LEYTMRKEGAEGV 185
Query: 237 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 296
++ I A+G SA+ H +D+ E GD+ ++D GA Y+ Y +DIT + G+ +
Sbjct: 186 AFDTIVASGCRSALPH----GKASDKVVERGDVIVIDFGATYENYCADITRVVSI-GEPS 240
Query: 297 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 356
+ +++ VL+A + K GV KL + + E +++ G
Sbjct: 241 DEVKEVHSIVLEAQERALKIAKAGVTG----KLLDSVAREFIREKGY------------- 283
Query: 357 GAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFID 416
F H LGH +G++ H+ P + R+ P L E +V TVEPG Y
Sbjct: 284 -GEFFGHSLGHGIGLEVHEG---PAISFRNDSP----------LPENVVFTVEPGIYL-- 327
Query: 417 ALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREI 469
G+F G+RIE DV++ G + +T++PR I
Sbjct: 328 --------------------EGKF----GIRIEEDVVLKEQGCEILTTLPRSI 356
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 70/311 (22%)
Query: 160 KPAQFEFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQM 219
K +F F+ L ++ E R+ K E+ +++ A+ I+ + E++ +GMKE ++
Sbjct: 112 KLGKFTFQP----LSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKEREL 167
Query: 220 E-SMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEY 278
+ L + G ++ I A+GEN+A H+ P +R GD+ +LD GA +
Sbjct: 168 ALKIELLIRELSDGI---AFEPIVASGENAANPHH----EPGERKIRKGDIIILDYGARW 220
Query: 279 QFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESL 338
+ Y SDIT + + G+ IY V A + A++ G+ D+ A ++I
Sbjct: 221 KGYCSDITRTIGL-GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVI---- 275
Query: 339 KKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVR 398
A G F+ H GH LG+D H+ EP + V
Sbjct: 276 -------------SKAGYGEYFI-HRTGHGLGLDVHE------------EPYIGPDGEVI 309
Query: 399 ELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANG 458
L+ M T+EPG Y VP + GGVRIE D++V
Sbjct: 310 -LKNGMTFTIEPGIY------VPGL--------------------GGVRIEDDIVVDEGK 342
Query: 459 SKNMTSVPREI 469
+ +T RE+
Sbjct: 343 GRRLTKAEREL 353
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 119/300 (39%), Gaps = 62/300 (20%)
Query: 170 LNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM 229
L+ + P++SE R K E+ + A +I + ++ G E ++ + +
Sbjct: 137 LHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKN 196
Query: 230 YGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSF 289
G S+ I A+G N A H+ P+ R GD+ + D GA+Y Y SD+T +
Sbjct: 197 EFGADDVSFEPIVASGPNGANPHH----RPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTV 252
Query: 290 PVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVD 349
V G + + +Y V +A + + G+ + A II K G
Sbjct: 253 VV-GPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGII----SKYG------- 300
Query: 350 EMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVE 409
G F+ H GH LGID H+ E PG K + L++ MV T+E
Sbjct: 301 ------YGEYFI-HRTGHGLGIDVHE--------EPYISPGNKKI-----LKDGMVFTIE 340
Query: 410 PGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREI 469
PG Y + G+F GVRIE DV + +T+ RE+
Sbjct: 341 PGIY----------------------LQGKF----GVRIEDDVALVDKKGIRLTNADREL 374
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 67/296 (22%)
Query: 176 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 235
+L + R+ K E+ + A H V G E Q+ + G H
Sbjct: 143 VLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEG---H 199
Query: 236 CSYT-CICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQ-FYGSDITCSFPVNG 293
+ I +G + A H+G+ +DR + GD+ ++D+G Y+ Y SD T ++ + G
Sbjct: 200 SAVAFVIVGSGPHGADPHHGY----SDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSI-G 254
Query: 294 KFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMA 353
+ D + Y+A+ +A A ++A++PGV + A ++ +
Sbjct: 255 DPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDVLAD----------------- 297
Query: 354 ARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCY 413
A L F+ H GH +G+ H+ G E G M ++EPG Y
Sbjct: 298 AGLAEYFV-HRTGHGIGLCVHEEPYIVAGNELPLVAG-------------MAFSIEPGIY 343
Query: 414 FIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREI 469
F GR+ G RIE V+VT NG+ ++ + P E+
Sbjct: 344 FP----------------------GRW----GARIEDIVVVTENGALSVNNRPHEL 373
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 237 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 296
S+ I +TG A++HY N RT ++ L+D GA+Y+ +D+T + T
Sbjct: 380 SFPTISSTGPTGAIIHYAPVPETN-RTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETP-T 437
Query: 297 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 356
+ + + VLK H AV A+ P + +L+S + + +D +
Sbjct: 438 AYEKECFTYVLKGHIAVSAAVFP--------TGTKGHLLDSFARSALWDSGLDYLHGTG- 488
Query: 357 GAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCY 413
HG+G FL + P G T S EP L+ M++T EPG Y
Sbjct: 489 ------HGVGSFLNVH-EGPCGISYKT-FSDEP----------LEAGMIVTDEPGYY 527
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 32/190 (16%)
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS------YTCICATG 245
++ A I++ A E K G+ +++ + H Y+ + S + C+T
Sbjct: 56 MRVAGRIAAGALAEAGKAVAPGVTTDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCSTS 113
Query: 246 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 305
N + H P+ DGD+ +D+ A D +FP G + L+ +
Sbjct: 114 LNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDR 168
Query: 306 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 365
+A IN +KPG + ++G V E A R G +
Sbjct: 169 TREATMRAINTVKPG-------------------RALSVIGRVIESYANRFGYNVVRDFT 209
Query: 366 GHFLGIDTHD 375
GH +G H+
Sbjct: 210 GHGIGTTFHN 219
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS------YTCICATG 245
++ A I++ A E K G+ +++ + H Y+ + S + C T
Sbjct: 56 MRVAGRIAAGALAEAGKAVAPGVTTDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCCTS 113
Query: 246 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 305
N + H P+ DGD+ +D+ A D +FP G + L+ +
Sbjct: 114 LNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDR 168
Query: 306 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 365
+A IN +KPG + ++G V E A R G +
Sbjct: 169 TREATMRAINTVKPG-------------------RALSVIGRVIESYANRFGYNVVRDFT 209
Query: 366 GHFLGIDTHD 375
GH +G H+
Sbjct: 210 GHGIGTTFHN 219
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS------YTCICATG 245
++ A I++ A E K G+ +++ + H Y+ + S + C T
Sbjct: 50 MRVAGRIAAGALAEAGKAVAPGVTTDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCCTS 107
Query: 246 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 305
N + H P+ DGD+ +D+ A D +FP G + L+ +
Sbjct: 108 LNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDR 162
Query: 306 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 365
+A IN +KPG + ++G V E A R G +
Sbjct: 163 TREATMRAINTVKPG-------------------RALSVIGRVIESYANRFGYNVVRDFT 203
Query: 366 GHFLGIDTHD 375
GH +G H+
Sbjct: 204 GHGIGTTFHN 213
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 192 IQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS------YTCICATG 245
++ A I++ A E K G+ +++ + H Y+ + S + C T
Sbjct: 53 MRVAGRIAAGALAEAGKAVAPGVTTDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCCTS 110
Query: 246 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 305
N + H P+ DGD+ +D+ A D +FP G + L+ +
Sbjct: 111 LNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDR 165
Query: 306 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 365
+A IN +KPG + ++G V E A R G +
Sbjct: 166 TREATMRAINTVKPG-------------------RALSVIGRVIESYANRFGYNVVRDFT 206
Query: 366 GHFLGIDTHD 375
GH +G H+
Sbjct: 207 GHGIGTTFHN 216
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 183 FKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLH---------HTYMYGGC 233
K+ E+ ++ A + A EV K G + +E++ L YGG
Sbjct: 16 IKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGY 75
Query: 234 RHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNG 293
++ TC+ N V+H ++ F++GD+ +D+GA YQ D ++ V
Sbjct: 76 KYA--TCVSV---NEEVVH---GLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGE 127
Query: 294 KFTSDQSLIYNAVLKAHNAVINAMKPGV 321
+ L+ + I +KPG+
Sbjct: 128 TDERGKELV-RVTREVLEKAIKMIKPGI 154
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 184 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCR-----HCSY 238
++ EL + A I A V V + G+ +++ + G H
Sbjct: 35 RTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFP 94
Query: 239 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSD 298
IC++ + V H DGD+ +D GA + D +F V SD
Sbjct: 95 ASICSSVNDQVV----HGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSD 150
Query: 299 QSLIYNAVLKAHNAVINAMKPG 320
++L A + A I AM PG
Sbjct: 151 EAL-SEATRLSMEAGIAAMIPG 171
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 244 TGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIY 303
+G S +L GH +RT E D+ + GA +++ + + SD
Sbjct: 43 SGIVSNLLKMGHTVTVWNRTAEKCDL-FIQEGARLGRTPAEVVSTCDITFACVSDPKAAK 101
Query: 304 NAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 336
+ VL + V+ ++PG C+VDM + + E
Sbjct: 102 DLVL-GPSGVLQGIRPGKCYVDMSTVDADTVTE 133
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 228 YMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITC 287
++Y C HC Y C +G+ + H +A D + AEY +D
Sbjct: 87 WLYSACGHCDY---CLSGQETLCEHQKNAGYSVDGGY-----------AEYCRAAADYVV 132
Query: 288 SFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLA 330
P N F + V + KPG WV ++ +
Sbjct: 133 KIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGE-WVAIYGIG 174
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 228 YMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITC 287
++Y C HC Y C +G+ + H +A D + AEY +D
Sbjct: 87 WLYSACGHCDY---CLSGQETLCEHQKNAGYSVDGGY-----------AEYCRAAADYVV 132
Query: 288 SFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLA 330
P N F + V + KPG WV ++ +
Sbjct: 133 KIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGE-WVAIYGIG 174
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 280 FYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLK 339
FY +T +F+S + L+Y+A+ K A+I +V+M + AE++ LE K
Sbjct: 208 FYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALI--------FVNMRRKAERVALELSK 259
Query: 340 K 340
K
Sbjct: 260 K 260
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 247 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN----GKFTSDQSLI 302
N+ V H+ + D ++GD+ +D+G + +++ +F V+ + T ++ +
Sbjct: 90 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADV 149
Query: 303 YNAVLKAHNAVINAMKPG 320
A A + +KPG
Sbjct: 150 IKAAHLCAEAALRLVKPG 167
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 247 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN----GKFTSDQSLI 302
N+ V H+ + D ++GD+ +D+G + +++ +F V+ + T ++ +
Sbjct: 83 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADV 142
Query: 303 YNAVLKAHNAVINAMKPG 320
A A + +KPG
Sbjct: 143 IKAAHLCAEAALRLVKPG 160
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 FEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKP 319
FED D ALL +GA+ + G + +NG+ +DQ NAV + V+ P
Sbjct: 106 FEDVDWALL-IGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 376 PGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDA 417
PGG +GTE +KE + RE+ E + I+VE GCY +A
Sbjct: 46 PGGEIEGTE-TKEEAIH-----REVLEELGISVEIGCYLGEA 81
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 247 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV----NGKFTSDQSLI 302
N+ V H+ + D ++GD+ +D+G + +++ +F + + T ++ +
Sbjct: 76 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRKADV 135
Query: 303 YNAVLKAHNAVINAMKPG 320
A A + +KPG
Sbjct: 136 IKAAHLCAEAALRLVKPG 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,187,921
Number of Sequences: 62578
Number of extensions: 657127
Number of successful extensions: 1667
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 39
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)