Query 011204
Match_columns 491
No_of_seqs 356 out of 982
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 22:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 3.2E-55 7E-60 435.7 25.8 273 96-409 46-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.4E-50 5.3E-55 386.3 13.6 189 137-333 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 3.8E-46 8.3E-51 354.9 21.9 171 149-336 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.8 9.1E-07 2E-11 91.0 23.8 241 125-379 1-286 (314)
5 PLN02218 polygalacturonase ADP 98.3 3.1E-05 6.6E-10 83.2 17.6 135 174-333 218-356 (431)
6 PLN03003 Probable polygalactur 98.3 2E-05 4.3E-10 85.1 16.1 171 134-315 104-288 (456)
7 PF14592 Chondroitinas_B: Chon 98.3 2.3E-05 4.9E-10 83.7 16.0 184 122-311 4-233 (425)
8 PLN02188 polygalacturonase/gly 98.2 6.9E-05 1.5E-09 79.9 16.9 104 174-298 181-285 (404)
9 PLN02155 polygalacturonase 98.1 6.1E-05 1.3E-09 80.1 15.0 135 174-333 171-310 (394)
10 PLN02793 Probable polygalactur 98.1 9.1E-05 2E-09 79.9 15.9 104 174-298 203-307 (443)
11 PLN03010 polygalacturonase 98.0 0.00026 5.6E-09 75.7 16.9 151 174-334 160-322 (409)
12 PF00295 Glyco_hydro_28: Glyco 98.0 8.2E-05 1.8E-09 76.8 12.7 104 174-298 118-222 (326)
13 TIGR03808 RR_plus_rpt_1 twin-a 97.8 0.0013 2.7E-08 71.0 17.9 118 122-259 54-177 (455)
14 PF13229 Beta_helix: Right han 97.8 0.00029 6.3E-09 62.2 10.9 132 174-337 3-138 (158)
15 PLN02218 polygalacturonase ADP 97.8 0.0011 2.3E-08 71.5 17.2 171 133-340 146-349 (431)
16 TIGR03805 beta_helix_1 paralle 97.7 0.0043 9.4E-08 64.1 19.2 155 154-318 62-247 (314)
17 PLN03010 polygalacturonase 97.6 0.0036 7.7E-08 67.1 17.5 117 217-340 182-314 (409)
18 PLN03003 Probable polygalactur 97.5 0.0036 7.7E-08 68.0 15.9 88 217-313 163-262 (456)
19 PF12708 Pectate_lyase_3: Pect 97.2 0.018 3.8E-07 54.4 16.2 104 124-243 20-140 (225)
20 PLN02155 polygalacturonase 97.2 0.0094 2E-07 63.6 15.9 168 135-339 107-302 (394)
21 PF01696 Adeno_E1B_55K: Adenov 97.2 0.025 5.3E-07 60.2 18.6 175 125-338 57-242 (386)
22 PLN02480 Probable pectinestera 97.1 0.012 2.5E-07 61.9 14.5 119 124-260 62-198 (343)
23 PF00295 Glyco_hydro_28: Glyco 97.0 0.0075 1.6E-07 62.4 12.2 109 151-289 62-185 (326)
24 PF05048 NosD: Periplasmic cop 97.0 0.037 8E-07 53.9 16.2 65 174-262 38-102 (236)
25 PLN02793 Probable polygalactur 97.0 0.033 7.2E-07 60.4 17.0 169 135-339 135-333 (443)
26 PF05048 NosD: Periplasmic cop 96.8 0.021 4.6E-07 55.5 12.8 72 174-269 16-88 (236)
27 PF13229 Beta_helix: Right han 96.8 0.01 2.2E-07 52.3 9.5 111 216-337 1-113 (158)
28 PLN02197 pectinesterase 96.7 0.025 5.5E-07 63.2 13.8 150 77-259 244-424 (588)
29 COG5434 PGU1 Endopygalactoruna 96.5 0.034 7.4E-07 61.6 13.5 100 174-298 264-375 (542)
30 TIGR03808 RR_plus_rpt_1 twin-a 96.5 0.04 8.6E-07 59.7 13.7 86 157-244 122-209 (455)
31 PF04431 Pec_lyase_N: Pectate 96.4 0.001 2.2E-08 52.5 0.6 24 29-52 20-43 (56)
32 PLN02188 polygalacturonase/gly 96.3 0.044 9.6E-07 58.8 12.7 168 135-339 114-313 (404)
33 PLN02665 pectinesterase family 96.3 1.1 2.5E-05 47.6 22.4 128 124-269 82-228 (366)
34 PF07602 DUF1565: Protein of u 96.2 0.26 5.7E-06 49.7 16.7 118 123-259 16-162 (246)
35 PLN02304 probable pectinestera 96.2 2 4.3E-05 46.0 23.6 119 124-260 89-228 (379)
36 PLN02634 probable pectinestera 96.0 2.6 5.7E-05 44.9 23.9 119 124-260 70-215 (359)
37 PLN02176 putative pectinestera 96.0 0.16 3.5E-06 53.5 14.2 120 124-260 53-189 (340)
38 PLN02682 pectinesterase family 95.6 0.2 4.3E-06 53.3 13.5 119 124-260 84-229 (369)
39 PLN02416 probable pectinestera 95.6 0.16 3.4E-06 56.6 13.2 114 124-259 244-377 (541)
40 PLN02497 probable pectinestera 95.5 3.9 8.4E-05 43.1 24.0 121 124-260 46-183 (331)
41 PLN02170 probable pectinestera 95.5 0.2 4.3E-06 55.6 13.3 114 124-259 239-373 (529)
42 PLN02201 probable pectinestera 95.5 0.2 4.3E-06 55.5 13.4 113 124-259 220-353 (520)
43 PLN02432 putative pectinestera 95.5 0.24 5.3E-06 51.1 13.2 130 124-287 25-171 (293)
44 PLN02488 probable pectinestera 95.5 0.22 4.7E-06 54.9 13.3 112 124-258 211-343 (509)
45 PLN02773 pectinesterase 95.4 1.5 3.4E-05 45.8 18.7 115 124-260 19-163 (317)
46 PLN02745 Putative pectinestera 95.3 0.26 5.6E-06 55.5 13.8 114 124-260 299-433 (596)
47 PLN02217 probable pectinestera 95.3 0.24 5.2E-06 56.3 13.3 98 124-241 264-382 (670)
48 PLN02916 pectinesterase family 95.3 0.27 5.9E-06 54.2 13.3 113 124-259 201-337 (502)
49 PF12708 Pectate_lyase_3: Pect 95.2 0.091 2E-06 49.5 8.6 120 156-292 98-221 (225)
50 PLN02995 Probable pectinestera 95.2 0.26 5.7E-06 54.8 13.3 114 124-260 237-373 (539)
51 smart00656 Amb_all Amb_all dom 95.2 0.55 1.2E-05 45.2 13.9 136 155-313 45-189 (190)
52 PLN03043 Probable pectinestera 95.2 0.31 6.7E-06 54.3 13.8 99 124-242 237-359 (538)
53 PLN02933 Probable pectinestera 95.2 0.31 6.7E-06 54.1 13.6 114 124-260 232-366 (530)
54 PLN02301 pectinesterase/pectin 95.0 0.29 6.3E-06 54.6 12.9 113 124-259 250-383 (548)
55 PLN02990 Probable pectinestera 95.0 0.37 7.9E-06 54.1 13.7 112 124-258 273-406 (572)
56 PLN02484 probable pectinestera 95.0 0.36 7.9E-06 54.2 13.7 113 124-259 286-420 (587)
57 PLN02314 pectinesterase 95.0 0.31 6.7E-06 54.8 13.0 112 124-258 292-424 (586)
58 PLN02506 putative pectinestera 95.0 0.31 6.7E-06 54.2 12.9 115 124-260 246-380 (537)
59 PLN02713 Probable pectinestera 94.9 0.36 7.8E-06 54.1 13.2 112 124-258 264-399 (566)
60 PLN02708 Probable pectinestera 94.7 0.41 8.8E-06 53.5 13.1 98 124-241 255-375 (553)
61 PLN02468 putative pectinestera 94.5 0.43 9.4E-06 53.4 12.7 113 124-259 272-405 (565)
62 PLN02313 Pectinesterase/pectin 94.5 0.51 1.1E-05 53.1 13.1 98 124-241 289-407 (587)
63 PF01095 Pectinesterase: Pecti 94.0 0.74 1.6E-05 47.6 12.2 123 124-269 14-156 (298)
64 COG3420 NosD Nitrous oxidase a 93.7 1.4 2.9E-05 46.7 13.4 131 149-302 45-197 (408)
65 PLN02671 pectinesterase 93.5 1.5 3.4E-05 46.5 13.8 119 124-260 73-219 (359)
66 COG3420 NosD Nitrous oxidase a 93.5 3.7 8E-05 43.5 16.2 70 174-259 123-192 (408)
67 COG3866 PelB Pectate lyase [Ca 93.1 2.2 4.7E-05 44.6 13.7 110 174-313 147-276 (345)
68 PF00544 Pec_lyase_C: Pectate 92.2 1.3 2.8E-05 43.0 10.3 115 173-310 77-200 (200)
69 PRK10531 acyl-CoA thioesterase 91.1 5.8 0.00013 43.1 14.7 121 124-260 96-283 (422)
70 PF14592 Chondroitinas_B: Chon 89.3 2 4.3E-05 46.7 9.3 105 224-338 199-324 (425)
71 PF08480 Disaggr_assoc: Disagg 85.8 3.6 7.8E-05 40.2 7.9 88 248-337 2-110 (198)
72 COG5434 PGU1 Endopygalactoruna 77.5 12 0.00027 41.9 9.4 115 174-312 241-368 (542)
73 PF03211 Pectate_lyase: Pectat 73.2 19 0.00042 35.9 8.6 49 212-261 93-142 (215)
74 PF12541 DUF3737: Protein of u 72.4 43 0.00093 34.6 11.0 71 222-312 154-224 (277)
75 TIGR03804 para_beta_helix para 70.9 7.7 0.00017 28.1 4.0 41 217-259 1-41 (44)
76 PRK10123 wcaM putative colanic 65.9 11 0.00025 39.3 5.4 56 175-241 263-318 (464)
77 PF07602 DUF1565: Protein of u 61.5 70 0.0015 32.5 10.0 85 154-262 96-190 (246)
78 PRK00753 psbL photosystem II r 52.5 14 0.0003 27.2 2.4 25 452-476 7-31 (39)
79 PF08480 Disaggr_assoc: Disagg 51.4 2.2E+02 0.0048 28.1 11.1 73 221-294 31-112 (198)
80 CHL00038 psbL photosystem II p 38.9 35 0.00076 25.1 2.7 23 454-476 8-30 (38)
81 PF12541 DUF3737: Protein of u 37.3 1.7E+02 0.0037 30.4 8.3 15 178-192 17-31 (277)
82 PLN02698 Probable pectinestera 33.8 1.3E+02 0.0029 33.5 7.6 65 174-258 265-329 (497)
83 PF02419 PsbL: PsbL protein; 28.5 43 0.00092 24.6 1.8 21 456-476 9-29 (37)
84 TIGR03804 para_beta_helix para 21.8 2E+02 0.0043 20.6 4.4 41 174-236 2-42 (44)
85 COG4371 Predicted membrane pro 21.2 1.4E+02 0.003 30.9 4.5 14 423-436 72-85 (334)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-55 Score=435.66 Aligned_cols=273 Identities=30% Similarity=0.362 Sum_probs=224.5
Q ss_pred CCCCCCCCCcEEEECCCCCCCCCCCCchhHHHHHhcCCCeEEEEccCeeEEec------ceEEecCCceEEeecceEEEe
Q 011204 96 QGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLK------HELIINSYKTIDGRGANVEIT 169 (491)
Q Consensus 96 ~~ttGG~gG~vy~VTnl~D~~~~~P~pGsLR~Av~~~~Pr~IvF~~sg~I~L~------~~L~V~SnkTI~G~Ga~v~I~ 169 (491)
.+||||.+|++++|++.+| |...+...+|.++|..+.|+|++. .+|.+.|||||.|.|++.+|.
T Consensus 46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~ 115 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV 115 (345)
T ss_pred CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence 4799999999999999887 688888899986666667899987 567889999999999999999
Q ss_pred cceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceee-eCCceEEEEeeEeec--------CCCCe
Q 011204 170 GNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI-FGSQKIWVDHCSLSY--------CTDGL 240 (491)
Q Consensus 170 Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI-~gs~nVWIDHcS~S~--------~~DGl 240 (491)
|++ |+|+.+.|||||||+|++.. +|++ ..|+|+| .+++|||||||+|+. ..||+
T Consensus 116 g~g-l~i~~a~NVIirNltf~~~~-~~d~---------------~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 116 GGG-LKIRDAGNVIIRNLTFEGFY-QGDP---------------NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred ece-EEEEeCCcEEEEeeEEEeec-cCCC---------------CCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 998 99999999999999999864 3321 2699999 579999999999999 78999
Q ss_pred eEeeeCCceEEEEcceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccccCCeEEEEcceEeCCc--ceE
Q 011204 241 IDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWE--MYA 317 (491)
Q Consensus 241 iDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~R~G~vHvvNN~y~nw~--~ya 317 (491)
+|+++++++||||||+|++|+|.+|+|.+|+...|.+ .+||+|||+| +|+.||+||+|||.+||+||||+... .||
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a 257 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA 257 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence 9999999999999999999999999999998666656 8999999999 79999999999999999999999654 466
Q ss_pred eecCCCceEEEeCcEEeCCCCCCCcceeeecccCccccCCCeeeccCceEEeceEeeeCCCC------CCccCCCCCcee
Q 011204 318 IGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAG------LSTQYAKASSVE 391 (491)
Q Consensus 318 iggs~~~~I~segNyF~~~~~~~~k~vt~r~~~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~------~~~~~~~~~~~~ 391 (491)
++-+..++|++|+|||+....+..---+++. + -.|+. -+|++|..++.. .+..+...|+|+
T Consensus 258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~-~-------GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt 324 (345)
T COG3866 258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT-S-------GYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT 324 (345)
T ss_pred EeeccceEEEEecceeccCCCCceeeecCCc-c-------ceEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence 6655669999999999997655322112221 0 11221 345565554432 344677888999
Q ss_pred cCChhhH-HHHHhcccCcc
Q 011204 392 PKSAALI-DQLTMNAGVFG 409 (491)
Q Consensus 392 ~~~~~~v-~~lt~~AG~~~ 409 (491)
+.|++.| +.||++||+-+
T Consensus 325 vd~~~dVks~Vt~yAGaGk 343 (345)
T COG3866 325 VDPPEDVKSFVTNYAGAGK 343 (345)
T ss_pred cCChHHhhhhhhcccccee
Confidence 9998888 89999999654
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.4e-50 Score=386.32 Aligned_cols=189 Identities=40% Similarity=0.662 Sum_probs=159.1
Q ss_pred EEEccCeeEEecceEEecCCceEEeecceEEEecceEEEEe-eeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCC
Q 011204 137 ITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQ-YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDG 215 (491)
Q Consensus 137 IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v~I~Ggg~i~i~-~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dg 215 (491)
+||+++|+|+++.+|.|.|||||+|+|++++|.+.| +.+. +++|||||||+|++.. ++..+...+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G-~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGG-LRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSE-EEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECce-EEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCC
Confidence 355557799999999999999999999999999987 6665 8999999999999841 1111111122235689
Q ss_pred CceeeeCCceEEEEeeEeecC--------CCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEe
Q 011204 216 DGISIFGSQKIWVDHCSLSYC--------TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHF 287 (491)
Q Consensus 216 DaIsI~gs~nVWIDHcS~S~~--------~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F 287 (491)
|+|++++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|+||+|++|+...|.+++||||||+|
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888888889999999999
Q ss_pred cCCCcccCccccCCeEEEEcceEeCCcceEeecCCCceEEEeCcEE
Q 011204 288 GVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRY 333 (491)
Q Consensus 288 ~~n~~qR~Pr~R~G~vHvvNN~y~nw~~yaiggs~~~~I~segNyF 333 (491)
.++.+|+||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 156 -~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 -ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred -CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 679999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=3.8e-46 Score=354.92 Aligned_cols=171 Identities=60% Similarity=0.892 Sum_probs=157.2
Q ss_pred ceEEecCCceEEeecceEEEecceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEE
Q 011204 149 HELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWV 228 (491)
Q Consensus 149 ~~L~V~SnkTI~G~Ga~v~I~Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWI 228 (491)
++|.|+|||||+|+|++++|.|++ |+++.++|||||||+|++..+. . ..++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~g-l~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGG-LTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeE-EEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 568889999999999999999987 9998899999999999986431 1 24789999999999999
Q ss_pred EeeEeecC---------CCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCcccc
Q 011204 229 DHCSLSYC---------TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299 (491)
Q Consensus 229 DHcS~S~~---------~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R 299 (491)
|||+|+|. .|+++|++.++++||||||+|.+|+|.+|+|++|+...+..++||+|||+|+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998876555689999999995 6899999999
Q ss_pred CCeEEEEcceEeCCcceEeecCCCceEEEeCcEEeCC
Q 011204 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAP 336 (491)
Q Consensus 300 ~G~vHvvNN~y~nw~~yaiggs~~~~I~segNyF~~~ 336 (491)
+|++|+|||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999975
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.84 E-value=9.1e-07 Score=90.98 Aligned_cols=241 Identities=16% Similarity=0.178 Sum_probs=133.8
Q ss_pred HHHHHhcCCCe-EEEEccCeeEEecceEEec-CCceEEeecce-EEEec------ceEEEEeeeccEEEEeeEEEeeccC
Q 011204 125 LRHAVIQTEPI-WITFASNMLIKLKHELIIN-SYKTIDGRGAN-VEITG------NGCLTLQYVSHVIIHNVHIHHCKPS 195 (491)
Q Consensus 125 LR~Av~~~~Pr-~IvF~~sg~I~L~~~L~V~-SnkTI~G~Ga~-v~I~G------gg~i~i~~a~NVIIrnL~Ir~~~~~ 195 (491)
|.+|+.+.+|- +|++ ..|+-++++.|.|. +++||.|.+.. ..|.+ +..|.+ .++||.|++++|++....
T Consensus 1 iQ~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~~ 78 (314)
T TIGR03805 1 LQEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKGD 78 (314)
T ss_pred CHhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCCC
Confidence 45677766665 4444 45777777888886 89999998864 33432 222544 688999999988774211
Q ss_pred CCccccCCC------CccccCc----CCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceee
Q 011204 196 GNTMIASSP------THVGYRG----KSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVML 265 (491)
Q Consensus 196 g~~~v~~s~------~~~g~r~----~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL 265 (491)
+..++.+. ....|.. ....+||.+..++++-|.+|.++...|--|- ...|++++|++|.+.+......
T Consensus 79 -GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy-v~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 79 -GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY-VGQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred -eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE-ECCCCCeEEECCEEccCcceEE
Confidence 11111100 0111111 1346788888889999999999887763332 3578888899998876544333
Q ss_pred eccCCcccCCCCeEEEEEeeEecCCCccc----Cc---cccCCeEEEEcceEeCCc----------------ceEeecCC
Q 011204 266 LGHNDKYALDMGMQVTIAFNHFGVALVQR----MP---RCRRGYIHVVNNDFTSWE----------------MYAIGGSA 322 (491)
Q Consensus 266 ~G~sds~~~D~g~~VTihhN~F~~n~~qR----~P---r~R~G~vHvvNN~y~nw~----------------~yaiggs~ 322 (491)
+-.+ .++.+.+|.+..|...= .| .+--..+.|.||.+.+-. ..++-...
T Consensus 157 i~~S--------~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~ 228 (314)
T TIGR03805 157 IENS--------QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMA 228 (314)
T ss_pred EEec--------CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEc
Confidence 3222 24566677764432111 11 111125667777765321 01111122
Q ss_pred CceEEEeCcEEeCCCCCCCcceeeecccC---ccccCCCeeeccCceEEeceEeeeCCCC
Q 011204 323 NPTINSQGNRYTAPPDDNAKEVTKRVETD---ESEWAGWNWRTEGDVMVNGAFFVPSGAG 379 (491)
Q Consensus 323 ~~~I~segNyF~~~~~~~~k~vt~r~~~~---~~~~~~w~w~s~Gd~~~nGa~f~~sg~~ 379 (491)
...+.+++|.|..-..+..- ++...... ...=.+|.-.. .++.+-.|.|...|..
T Consensus 229 ~~~v~I~~N~i~~n~~~~i~-~~~~~~~~~~~~~~~~~~~~~~-~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 229 NRDVEIFGNVISNNDTANVL-ISSYHSTGLPDQPPDDGFDPYP-RNISIHDNTFSDGGTN 286 (314)
T ss_pred ccceEEECCEEeCCcceeEE-EEecccccCCCCCcCCCccCCC-cceEEEccEeecCCCC
Confidence 35678899999876543221 22211110 00012333233 5678888888877753
No 5
>PLN02218 polygalacturonase ADPG
Probab=98.28 E-value=3.1e-05 Score=83.20 Aligned_cols=135 Identities=20% Similarity=0.198 Sum_probs=89.1
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+..++||.|+||+|... + .....|||.+.+++||.|.+|.++...| .|.++.++++|+|+
T Consensus 218 i~~~~~~nV~i~~v~I~a~---~--------------~spNTDGIdi~ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I~ 279 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAP---A--------------DSPNTDGIHITNTQNIRVSNSIIGTGDD-CISIESGSQNVQIN 279 (431)
T ss_pred EEEEceeeEEEEEEEEeCC---C--------------CCCCCCcEeecccceEEEEccEEecCCc-eEEecCCCceEEEE
Confidence 4455677777777777641 0 1246799999999999999999998855 56788999999999
Q ss_pred cceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCcccc---CCeEEEEcceEeCCcceEeecCCCceEEEe
Q 011204 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCR---RGYIHVVNNDFTSWEMYAIGGSANPTINSQ 329 (491)
Q Consensus 254 nn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~R---~G~vHvvNN~y~nw~~yaiggs~~~~I~se 329 (491)
||.+.... ..-+|+--.+....+ .+|++.++.| .+ ..+.=|++ .|.-.+-|=.|+|..|..+. .| |.+.
T Consensus 280 n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~---~p-I~Id 352 (431)
T PLN02218 280 DITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKL-SG-TDNGVRIKTYQGGSGTASNIIFQNIQMENVK---NP-IIID 352 (431)
T ss_pred eEEEECCC-CEEECcCCCCCCCceEEEEEEEccEE-ec-CCcceEEeecCCCCeEEEEEEEEeEEEEccc---cc-EEEE
Confidence 99996533 356786543332223 7899999999 44 34555553 22334444445555444332 23 5555
Q ss_pred CcEE
Q 011204 330 GNRY 333 (491)
Q Consensus 330 gNyF 333 (491)
-+|.
T Consensus 353 q~Y~ 356 (431)
T PLN02218 353 QDYC 356 (431)
T ss_pred eecc
Confidence 5554
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.28 E-value=2e-05 Score=85.07 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred CeEEEEccCeeEEecceEEecCCceEEeecceEEE--ec-ceEEEEeeeccEEEEeeEEEeeccCCCccccCCCC----c
Q 011204 134 PIWITFASNMLIKLKHELIINSYKTIDGRGANVEI--TG-NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPT----H 206 (491)
Q Consensus 134 Pr~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v~I--~G-gg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~----~ 206 (491)
..||.|..- +.|.|...=||+|||..--- .. .-.|++.+++||.|++|++++.. .|-..+..+.. +
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp-~w~i~i~~c~nV~i~~ 176 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP-MAHIHISECNYVTISS 176 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC-cEEEEEeccccEEEEE
Confidence 348888532 12444433478888753110 00 11356667777777777776531 11110000000 0
Q ss_pred c---ccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCC-eEEEE
Q 011204 207 V---GYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTI 282 (491)
Q Consensus 207 ~---g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g-~~VTi 282 (491)
+ ........|||.+..++||+|.+|.++...|.. .++.++++|+|+||.+.... ..-+|+--++....+ .+|++
T Consensus 177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCI-aiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~NV~v 254 (456)
T PLN03003 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCI-AINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATVENVCV 254 (456)
T ss_pred EEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeE-EeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceEEEEEE
Confidence 0 001235789999999999999999998876654 68889999999999997543 356776544332123 79999
Q ss_pred EeeEecCCCcccCcccc---CCeEEEEcceEeCCcc
Q 011204 283 AFNHFGVALVQRMPRCR---RGYIHVVNNDFTSWEM 315 (491)
Q Consensus 283 hhN~F~~n~~qR~Pr~R---~G~vHvvNN~y~nw~~ 315 (491)
.++.| .+ .++.=|++ .|.-.+-|=.|+|..|
T Consensus 255 ~n~~~-~~-T~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 255 QNCNF-RG-TMNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred EeeEE-EC-CCcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 99999 45 34444553 2323344444555543
No 7
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.27 E-value=2.3e-05 Score=83.67 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=81.8
Q ss_pred chhHHHHHhcCCCe-EEEEccCeeEEecceEEe------cCCceEEeec-ceEEEecceEEEEeeeccEEEEeeEEEeec
Q 011204 122 PGTLRHAVIQTEPI-WITFASNMLIKLKHELII------NSYKTIDGRG-ANVEITGNGCLTLQYVSHVIIHNVHIHHCK 193 (491)
Q Consensus 122 pGsLR~Av~~~~Pr-~IvF~~sg~I~L~~~L~V------~SnkTI~G~G-a~v~I~Ggg~i~i~~a~NVIIrnL~Ir~~~ 193 (491)
+.+|..|+.+-.|= +|+. .+|+-+ ..+|.+ ...+||..+. ..+.|.|..+|+| ..+.++|.+|.|++..
T Consensus 4 ~~~lq~Ai~~a~pGD~I~L-~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~ 80 (425)
T PF14592_consen 4 VAELQSAIDNAKPGDTIVL-ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGY 80 (425)
T ss_dssp HHHHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE-
T ss_pred HHHHHHHHHhCCCCCEEEE-CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCC
Confidence 34689999765553 3333 456655 335555 1368888874 3488888888888 4799999999999875
Q ss_pred cCCCcccc--CCCCc-cc------------cCc-CCCCCceee----eCCceEEEEeeEeecC-CCC-eeEee-------
Q 011204 194 PSGNTMIA--SSPTH-VG------------YRG-KSDGDGISI----FGSQKIWVDHCSLSYC-TDG-LIDAI------- 244 (491)
Q Consensus 194 ~~g~~~v~--~s~~~-~g------------~r~-~~dgDaIsI----~gs~nVWIDHcS~S~~-~DG-liDv~------- 244 (491)
++....+. .+... +. +.. ..+.+...+ --.+|--||||.|..- ..| .+-+.
T Consensus 81 ~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~ 160 (425)
T PF14592_consen 81 TPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQ 160 (425)
T ss_dssp --TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-
T ss_pred CCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcc
Confidence 43222111 11110 00 000 111122233 1356667899999973 223 22211
Q ss_pred eCCceEEEEcceeccC-------CceeeeccCCcccCCCCeEEEEEeeEecCCCcccCccc--cCCeEEEEcceEe
Q 011204 245 MGSTGITISNNYFSHH-------NEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRC--RRGYIHVVNNDFT 311 (491)
Q Consensus 245 ~gS~~ITISnn~f~~h-------~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~--R~G~vHvvNN~y~ 311 (491)
.-..+-+|.+|+|.+. .+++-+|.|.....+ -+.++.+|+| ++|..-.--+ +-+.--+.||.|+
T Consensus 161 ~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~ 233 (425)
T PF14592_consen 161 SIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFR 233 (425)
T ss_dssp ------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEE
T ss_pred ccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEE
Confidence 1245779999999953 457778887544333 4789999999 6776553322 2233334455444
No 8
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.16 E-value=6.9e-05 Score=79.92 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=77.5
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+..++||.|++|+|.... .....|||.++.++||+|.+|.+....| .|-++.++++|+|+
T Consensus 181 i~~~~~~~v~i~~v~I~~~~-----------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~ 242 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPS-----------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTIT 242 (404)
T ss_pred EEEEccccEEEEEEEEeCCC-----------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEE
Confidence 56668899999999997521 1246799999999999999999998877 55688899999999
Q ss_pred cceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccc
Q 011204 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (491)
Q Consensus 254 nn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~ 298 (491)
|+.+.... .+-+|+--.+....+ .+|++.++.|. + .++.=|+
T Consensus 243 n~~c~~gh-GisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~Giri 285 (404)
T PLN02188 243 RIRCGPGH-GISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRI 285 (404)
T ss_pred EEEEcCCC-cEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEE
Confidence 99996543 456777433322223 79999999994 4 3444444
No 9
>PLN02155 polygalacturonase
Probab=98.10 E-value=6.1e-05 Score=80.10 Aligned_cols=135 Identities=20% Similarity=0.176 Sum_probs=89.9
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+..++||.|+||+|.... .....|||.+..++||+|.+|.+....| .|-++.++++|+|+
T Consensus 171 i~~~~~~nv~i~~v~I~~p~-----------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~ 232 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPG-----------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLIT 232 (394)
T ss_pred EEEECeeeEEEEEEEEECCC-----------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEE
Confidence 55668899999999997521 0246799999999999999999998888 45688899999999
Q ss_pred cceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccccC----CeEEEEcceEeCCcceEeecCCCceEEE
Q 011204 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRR----GYIHVVNNDFTSWEMYAIGGSANPTINS 328 (491)
Q Consensus 254 nn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~R~----G~vHvvNN~y~nw~~yaiggs~~~~I~s 328 (491)
+|.+.... .+-+|+.-.+....+ .+|++.++.| .+ ..+.=|++- +.-.|-|=.|+|..|-.+. .| |.+
T Consensus 233 n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~---~p-I~i 305 (394)
T PLN02155 233 KLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVF-TG-SQNGVRIKSWARPSTGFVRNVFFQDLVMKNVE---NP-III 305 (394)
T ss_pred EEEEECCc-eEEeccccccCCCCcEEEEEEEeeEE-eC-CCcEEEEEEecCCCCEEEEEEEEEeEEEcCcc---cc-EEE
Confidence 99998533 466887532221223 7999999999 44 334444421 1233444445555443322 22 555
Q ss_pred eCcEE
Q 011204 329 QGNRY 333 (491)
Q Consensus 329 egNyF 333 (491)
.-+|+
T Consensus 306 ~q~Y~ 310 (394)
T PLN02155 306 DQNYC 310 (394)
T ss_pred Eeccc
Confidence 55554
No 10
>PLN02793 Probable polygalacturonase
Probab=98.08 E-value=9.1e-05 Score=79.86 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=75.1
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+..++||.|+||+|.... .....|||.+..++||+|.+|.+....|. |-++.++++|+|+
T Consensus 203 i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~ 264 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIR 264 (443)
T ss_pred EEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCCCCe-EEecCCcCCEEEE
Confidence 45567788888888887521 12467999999999999999999876554 4577899999999
Q ss_pred cceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccc
Q 011204 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (491)
Q Consensus 254 nn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~ 298 (491)
||.+..... .-+|+--.+....+ .+|++.++.| .+ ..+.=|+
T Consensus 265 n~~c~~GhG-isIGSlg~~~~~~~V~nV~v~n~~~-~~-t~~GirI 307 (443)
T PLN02793 265 NIACGPGHG-ISIGSLGKSNSWSEVRDITVDGAFL-SN-TDNGVRI 307 (443)
T ss_pred EeEEeCCcc-EEEecccCcCCCCcEEEEEEEccEE-eC-CCceEEE
Confidence 999975443 55776533222223 7899999999 44 3445454
No 11
>PLN03010 polygalacturonase
Probab=97.97 E-value=0.00026 Score=75.71 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=87.4
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCcc--------ccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeee
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHV--------GYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~--------g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~ 245 (491)
|++.+++||.|++|++++. |.|-..+..+. ++ ........|||.+..++||+|.+|.+....| .|-++.
T Consensus 160 l~~~~~~nv~v~gitl~ns-p~~~i~i~~~~-nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDD-cIaiks 236 (409)
T PLN03010 160 LHISKCDNLTINGITSIDS-PKNHISIKTCN-YVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDD-CIAINS 236 (409)
T ss_pred EEEEeecCeEEeeeEEEcC-CceEEEEeccc-cEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCC-eEEecC
Confidence 5566677777777777653 11111110000 00 0011357799999999999999999988855 556888
Q ss_pred CCceEEEEcceeccCCceeeeccCCccc-CCCCeEEEEEeeEecCCCcccCcccc---CCeEEEEcceEeCCcceEeecC
Q 011204 246 GSTGITISNNYFSHHNEVMLLGHNDKYA-LDMGMQVTIAFNHFGVALVQRMPRCR---RGYIHVVNNDFTSWEMYAIGGS 321 (491)
Q Consensus 246 gS~~ITISnn~f~~h~k~mL~G~sds~~-~D~g~~VTihhN~F~~n~~qR~Pr~R---~G~vHvvNN~y~nw~~yaiggs 321 (491)
++++++|.++...... ..-+|+.-+.. .+.-.+|++.++.|. + .++.=|++ .+.-.|-|=.|+|..+...
T Consensus 237 gs~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V~nV~v~n~~i~-~-t~~GirIKt~~G~~G~v~nItf~nI~m~~v--- 310 (409)
T PLN03010 237 GSSNINITQINCGPGH-GISVGSLGADGANAKVSDVHVTHCTFN-Q-TTNGARIKTWQGGQGYARNISFENITLINT--- 310 (409)
T ss_pred CCCcEEEEEEEeECcC-CEEEccCCCCCCCCeeEEEEEEeeEEe-C-CCcceEEEEecCCCEEEEEeEEEeEEEecC---
Confidence 8888888877765332 34567653332 122279999999994 4 34444543 2233444444666544332
Q ss_pred CCceEEEeCcEEe
Q 011204 322 ANPTINSQGNRYT 334 (491)
Q Consensus 322 ~~~~I~segNyF~ 334 (491)
..| |.++-+|..
T Consensus 311 ~~p-I~I~q~Y~~ 322 (409)
T PLN03010 311 KNP-IIIDQQYID 322 (409)
T ss_pred Ccc-EEEEeeccC
Confidence 233 555555554
No 12
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.97 E-value=8.2e-05 Score=76.81 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=75.3
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+..++||.|++|+|+.... ....|||.+.+++||.|++|.+....|. |-++.++.+|+|+
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~-----------------~~NtDGid~~~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~ 179 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPAN-----------------SPNTDGIDIDSSKNVTIENCFIDNGDDC-IAIKSGSGNILVE 179 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGG-----------------CTS--SEEEESEEEEEEESEEEESSSES-EEESSEECEEEEE
T ss_pred EEEEccCCeEEcceEEEecCC-----------------CCCcceEEEEeeeEEEEEEeecccccCc-ccccccccceEEE
Confidence 667789999999999997421 2467999999999999999999887554 4577788899999
Q ss_pred cceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccc
Q 011204 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (491)
Q Consensus 254 nn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~ 298 (491)
||.+..... +-+|+.-....... .+|++.++.| .+ ..|.-|+
T Consensus 180 n~~~~~ghG-isiGS~~~~~~~~~i~nV~~~n~~i-~~-t~~gi~i 222 (326)
T PF00295_consen 180 NCTCSGGHG-ISIGSEGSGGSQNDIRNVTFENCTI-IN-TDNGIRI 222 (326)
T ss_dssp SEEEESSSE-EEEEEESSSSE--EEEEEEEEEEEE-ES-ESEEEEE
T ss_pred eEEEecccc-ceeeeccCCccccEEEeEEEEEEEe-ec-cceEEEE
Confidence 999986444 66775433211112 6899999999 44 4455555
No 13
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.78 E-value=0.0013 Score=70.96 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=76.7
Q ss_pred chhHHHHHhcCC-C-eEEEEccCeeEEecceEEecCCceEEeecceE--EEecce-EEEEeeeccEEEEeeEEEeeccCC
Q 011204 122 PGTLRHAVIQTE-P-IWITFASNMLIKLKHELIINSYKTIDGRGANV--EITGNG-CLTLQYVSHVIIHNVHIHHCKPSG 196 (491)
Q Consensus 122 pGsLR~Av~~~~-P-r~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v--~I~Ggg-~i~i~~a~NVIIrnL~Ir~~~~~g 196 (491)
-..|++|+.+.. | -.|++.. |+ .+..+|.+++++||.|+.... .|.+.+ .+.-..++||-|++++|++.-
T Consensus 54 T~ALQaAIdaAa~gG~tV~Lp~-G~-Y~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG--- 128 (455)
T TIGR03808 54 TRALQRAIDEAARAQTPLALPP-GV-YRTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGGG--- 128 (455)
T ss_pred HHHHHHHHHHhhcCCCEEEECC-Cc-eecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeCC---
Confidence 346888875422 2 3455544 33 234778899999999985432 355443 332348999999999998731
Q ss_pred CccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCC-CCeeEeeeCCceEEEEcceecc
Q 011204 197 NTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCT-DGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 197 ~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~-DGliDv~~gS~~ITISnn~f~~ 259 (491)
. ......-+|.+.+++++-|.+|.+.... .|.. .+++. ..|++|.+..
T Consensus 129 ~------------dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~g 177 (455)
T TIGR03808 129 I------------PLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTITQ 177 (455)
T ss_pred C------------cccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEec
Confidence 1 1112334788989999999999999984 7763 24555 5555555553
No 14
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.76 E-value=0.00029 Score=62.22 Aligned_cols=132 Identities=23% Similarity=0.290 Sum_probs=81.0
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
|.+....++.|++.+|+++ ..+||.+.++..+.|+.|+|.+...|+ .+ .+..+++|+
T Consensus 3 i~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi-~~-~~~~~~~i~ 59 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGI-YV-SGGSNVTIS 59 (158)
T ss_dssp EEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSE-EE-ECCES-EEE
T ss_pred EEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEE-EE-ecCCCeEEE
Confidence 6777788999999999974 357899999999999999999966665 33 566999999
Q ss_pred cceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCcccc--CCeEEEEcceEeCCcceEeecC--CCceEEEe
Q 011204 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR--RGYIHVVNNDFTSWEMYAIGGS--ANPTINSQ 329 (491)
Q Consensus 254 nn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R--~G~vHvvNN~y~nw~~yaiggs--~~~~I~se 329 (491)
+|.|.+......+-. ...+++.+|.|.. +..-.=.++ ...+.+.||.+.+-..+++... ..+.+.++
T Consensus 60 ~~~~~~~~~~i~~~~--------~~~~~i~~~~i~~-~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~ 130 (158)
T PF13229_consen 60 NNTISDNGSGIYVSG--------SSNITIENNRIEN-NGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIE 130 (158)
T ss_dssp S-EEES-SEEEECCS---------CS-EEES-EEEC-SSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEE
T ss_pred CeEEEEccceEEEEe--------cCCceecCcEEEc-CCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEE
Confidence 999998773222211 1368888999843 332222222 2357889999887654433322 24588889
Q ss_pred CcEEeCCC
Q 011204 330 GNRYTAPP 337 (491)
Q Consensus 330 gNyF~~~~ 337 (491)
+|.|....
T Consensus 131 ~n~i~~~~ 138 (158)
T PF13229_consen 131 NNTISNNG 138 (158)
T ss_dssp CEEEECES
T ss_pred EEEEEeCc
Confidence 99998754
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.76 E-value=0.0011 Score=71.52 Aligned_cols=171 Identities=17% Similarity=0.223 Sum_probs=109.0
Q ss_pred CCeEEEEccCeeEEecceEEecC--CceEEeecceEE-----E------ecce-EEEEeeeccEEEEeeEEEeeccCCCc
Q 011204 133 EPIWITFASNMLIKLKHELIINS--YKTIDGRGANVE-----I------TGNG-CLTLQYVSHVIIHNVHIHHCKPSGNT 198 (491)
Q Consensus 133 ~Pr~IvF~~sg~I~L~~~L~V~S--nkTI~G~Ga~v~-----I------~Ggg-~i~i~~a~NVIIrnL~Ir~~~~~g~~ 198 (491)
...||.|... +.|.|.. .=||+|+|+.-- . .... .|++.+++||.|++|++++..
T Consensus 146 ~~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp----- 214 (431)
T PLN02218 146 ISKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQ----- 214 (431)
T ss_pred cccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCC-----
Confidence 3457777431 2344533 268888885210 0 0011 377889999999999999841
Q ss_pred cccCCCCccccCcCCCCCceeeeCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCccc
Q 011204 199 MIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYA 273 (491)
Q Consensus 199 ~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~ 273 (491)
-| .|.+..++||.|++.++.. -.||. |+ ..+++|+|++|.|...+...-+.+..
T Consensus 215 ---------~w-------~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIaIksgs--- 273 (431)
T PLN02218 215 ---------QI-------QISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCISIESGS--- 273 (431)
T ss_pred ---------CE-------EEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEEecCCC---
Confidence 12 4788899999999999876 46776 74 68899999999999988877665431
Q ss_pred CCCCeEEEEEeeEecCCCc----ccCccccCC---eEEEEcceEeCCcceEe-------ecCCCceEEEeCcEEeCCCCC
Q 011204 274 LDMGMQVTIAFNHFGVALV----QRMPRCRRG---YIHVVNNDFTSWEMYAI-------GGSANPTINSQGNRYTAPPDD 339 (491)
Q Consensus 274 ~D~g~~VTihhN~F~~n~~----qR~Pr~R~G---~vHvvNN~y~nw~~yai-------ggs~~~~I~segNyF~~~~~~ 339 (491)
.+|++.++.+..+.. +-+-....+ .++|-|+.+.+.. +++ +++.-..|.+++...+....|
T Consensus 274 ----~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 274 ----QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred ----ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 478888887754321 111000011 4667777776532 121 222334677888888877665
Q ss_pred C
Q 011204 340 N 340 (491)
Q Consensus 340 ~ 340 (491)
.
T Consensus 349 I 349 (431)
T PLN02218 349 I 349 (431)
T ss_pred E
Confidence 4
No 16
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.66 E-value=0.0043 Score=64.08 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=94.1
Q ss_pred cCCceEEeecceEEEecceEEEEeeeccEEEEeeEEEeecc--------------CCCccccCCCCccccCcCCCCCcee
Q 011204 154 NSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKP--------------SGNTMIASSPTHVGYRGKSDGDGIS 219 (491)
Q Consensus 154 ~SnkTI~G~Ga~v~I~Ggg~i~i~~a~NVIIrnL~Ir~~~~--------------~g~~~v~~s~~~~g~r~~~dgDaIs 219 (491)
.+++||.+.+-.- -.+.+ |.+++++||+|+++++..... +.+..++... .+ ...++||.
T Consensus 62 a~~VtI~~ltI~~-~~~~G-I~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~----i~-g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVEN-TKGDG-VKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSY----VR-GASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEEc-CCCCe-EEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCE----EE-CCCcccEE
Confidence 3566666542110 01223 778889999999999974210 0001111110 01 12345899
Q ss_pred eeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeee-ccCCcccCCCCeEEEEEeeEecCCCccc----
Q 011204 220 IFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLL-GHNDKYALDMGMQVTIAFNHFGVALVQR---- 294 (491)
Q Consensus 220 I~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~-G~sds~~~D~g~~VTihhN~F~~n~~qR---- 294 (491)
+..++++.|.+|.+.....|+. ...|.++.|.+|.+.+.....++ +.+..... ...++.+++|.|..|....
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~-~s~~~~v~~N~i~~n~~~n~~~~ 211 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQP-GGSNVRVFDNIIFDNNTPNFAPA 211 (314)
T ss_pred ECCCCCeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcC-CccceEEECCEEECCCCCCCccc
Confidence 9999999999999999888874 35789999999999976554444 33322111 1258999999996552210
Q ss_pred ------CccccC------CeEEEEcceEeCCcceEe
Q 011204 295 ------MPRCRR------GYIHVVNNDFTSWEMYAI 318 (491)
Q Consensus 295 ------~Pr~R~------G~vHvvNN~y~nw~~yai 318 (491)
.|.-+. -.+.++||.+++-...++
T Consensus 212 gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 212 GSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 111110 146899999987654444
No 17
>PLN03010 polygalacturonase
Probab=97.56 E-value=0.0036 Score=67.13 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=72.7
Q ss_pred ceeeeCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCC
Q 011204 217 GISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVAL 291 (491)
Q Consensus 217 aIsI~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~ 291 (491)
.|.+.+++||.|++..+.. -.||. |+ ..+++|+|++|.+...+...-+.+... ..+|+..+|..+|+.
T Consensus 182 ~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGi 254 (409)
T PLN03010 182 HISIKTCNYVAISKINILAPETSPNTDGI-DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGI 254 (409)
T ss_pred EEEEeccccEEEEEEEEeCCCCCCCCCce-ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCE
Confidence 4788899999999999875 46776 74 679999999999999988777765421 246666666655431
Q ss_pred --cccCcccc---CCeEEEEcceEeCCc-ce---Ee-e-cCCCceEEEeCcEEeCCCCCC
Q 011204 292 --VQRMPRCR---RGYIHVVNNDFTSWE-MY---AI-G-GSANPTINSQGNRYTAPPDDN 340 (491)
Q Consensus 292 --~qR~Pr~R---~G~vHvvNN~y~nw~-~y---ai-g-gs~~~~I~segNyF~~~~~~~ 340 (491)
.+-+-.-. .-.++|.|+.+++-. .- .. | ++.-..|.+|+-.++....|.
T Consensus 255 sIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 255 SVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred EEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccE
Confidence 11100000 125778888876531 11 11 1 112234666777777666553
No 18
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.45 E-value=0.0036 Score=67.95 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=60.2
Q ss_pred ceeeeCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCC
Q 011204 217 GISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVAL 291 (491)
Q Consensus 217 aIsI~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~ 291 (491)
.|.+.+++||.|++..+.. -.||. |+ ..|++|+|.+|.+...+...-+.+.. .+|++.++.++.+.
T Consensus 163 ~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~~c~~GH 233 (456)
T PLN03003 163 HIHISECNYVTISSLRINAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGIDCGPGH 233 (456)
T ss_pred EEEEeccccEEEEEEEEeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEeeEEECCC
Confidence 4778899999999999986 36776 74 68999999999999998877776542 35677666653321
Q ss_pred ------cccCcc-ccCCeEEEEcceEeCC
Q 011204 292 ------VQRMPR-CRRGYIHVVNNDFTSW 313 (491)
Q Consensus 292 ------~qR~Pr-~R~G~vHvvNN~y~nw 313 (491)
..+... -..-.++|.|+.+++-
T Consensus 234 GISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 234 GISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred CeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 111110 0011577888888763
No 19
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.24 E-value=0.018 Score=54.35 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=63.7
Q ss_pred hHHHHH--hc-CCCeEEEEccCeeEEecceEEecCCceEEeecce-EEEe--cce-------E-EEEee-ecc--EEEEe
Q 011204 124 TLRHAV--IQ-TEPIWITFASNMLIKLKHELIINSYKTIDGRGAN-VEIT--GNG-------C-LTLQY-VSH--VIIHN 186 (491)
Q Consensus 124 sLR~Av--~~-~~Pr~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~-v~I~--Ggg-------~-i~i~~-a~N--VIIrn 186 (491)
.|.+|+ .+ .+..+|.| ..|+-.+++.|.+.++++|.|.|.. ..+. +.. . ..+.. ..+ +.|+|
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 588888 33 34455555 5689999999999999999998763 3333 110 0 11211 122 44999
Q ss_pred eEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEe
Q 011204 187 VHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDA 243 (491)
Q Consensus 187 L~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv 243 (491)
|+|...... . ....++|.+..+++++|++|++..+....+.+
T Consensus 99 l~i~~~~~~-------------~--~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 99 LTIDGNGID-------------P--NNNNNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEEETCGC-------------E---SCEEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred eEEEccccc-------------C--CCCceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 999864210 0 11246788888999999999999875444443
No 20
>PLN02155 polygalacturonase
Probab=97.24 E-value=0.0094 Score=63.64 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=106.0
Q ss_pred eEEEEccCeeEEecceEEecCCceEEeecceEEEe---c------ceEEEEeeeccEEEEeeEEEeeccCCCccccCCCC
Q 011204 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVEIT---G------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPT 205 (491)
Q Consensus 135 r~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v~I~---G------gg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~ 205 (491)
.||.|..- +.+.|.. =||+|||..---. + ...|++.+++||.|++|++++..
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp------------ 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ------------ 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC------------
Confidence 47777542 2344443 5889998641110 0 01377889999999999999851
Q ss_pred ccccCcCCCCCceeeeCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEE
Q 011204 206 HVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQV 280 (491)
Q Consensus 206 ~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~V 280 (491)
.| .+.+.+++||.|+|.++.. -.||. |+ ..+++|+|++|.|...+....++... .+|
T Consensus 168 --~w-------~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 168 --VS-------HMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --Ce-------EEEEECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 12 4778899999999999965 35766 64 67999999999999998877776542 367
Q ss_pred EEEeeEecCCC------cccCc-cccCCeEEEEcceEeCCc-c-----eEe-ecCCCceEEEeCcEEeCCCCC
Q 011204 281 TIAFNHFGVAL------VQRMP-RCRRGYIHVVNNDFTSWE-M-----YAI-GGSANPTINSQGNRYTAPPDD 339 (491)
Q Consensus 281 TihhN~F~~n~------~qR~P-r~R~G~vHvvNN~y~nw~-~-----yai-ggs~~~~I~segNyF~~~~~~ 339 (491)
++.++.+..+. ..+.+ .-..-.+.|.|+.+.+-. . ++- +++.-..|.+++-..+....|
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~p 302 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENP 302 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCcccc
Confidence 77776664321 11111 111125778888887631 1 111 112223566667676666554
No 21
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.23 E-value=0.025 Score=60.20 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=123.3
Q ss_pred HHHHHhcCCCeEEEEccCeeEEecceEEecCCceEEeecceEEEecce--EEE---------EeeeccEEEEeeEEEeec
Q 011204 125 LRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLT---------LQYVSHVIIHNVHIHHCK 193 (491)
Q Consensus 125 LR~Av~~~~Pr~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v~I~Ggg--~i~---------i~~a~NVIIrnL~Ir~~~ 193 (491)
|-+|+.+-. .|..+.+-+-++++++.|.+..+|+|+||-|.|.+-+ .++ |.+-.+|.+.|++|....
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~~ 134 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGRD 134 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecCC
Confidence 677776554 3566666677788999999999999999998886422 133 346679999999997521
Q ss_pred cCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeeeccCCccc
Q 011204 194 PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYA 273 (491)
Q Consensus 194 ~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~ 273 (491)
.--++-+...+++.|.-|+|....--.++.. ....|..|+|..-+|+... .+.
T Consensus 135 --------------------~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~-~~~--- 187 (386)
T PF01696_consen 135 --------------------TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS-RGK--- 187 (386)
T ss_pred --------------------ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec-CCc---
Confidence 1346777789999999999999887776643 6788999999877776422 211
Q ss_pred CCCCeEEEEEeeEecCCCcccCccccCCeEEEEcceEeCCcceEeecCCCceEEEeCcEEeCCCC
Q 011204 274 LDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPD 338 (491)
Q Consensus 274 ~D~g~~VTihhN~F~~n~~qR~Pr~R~G~vHvvNN~y~nw~~yaiggs~~~~I~segNyF~~~~~ 338 (491)
.++++.+|.| +.+.==. +-.|..++.+|...+-.-...- +.+-.+.+|.|..+.+
T Consensus 188 ----~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l~---~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 188 ----SKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVLM---KGTGSIKHNMVCGPND 242 (386)
T ss_pred ----ceEEeeheee-eheEEEE--EecCCeEEecceecccceEEEE---cccEEEeccEEeCCCC
Confidence 4788899999 4332111 2357889999998876533332 1234568899987655
No 22
>PLN02480 Probable pectinesterase
Probab=97.09 E-value=0.012 Score=61.94 Aligned_cols=119 Identities=17% Similarity=0.301 Sum_probs=79.0
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecce-EEEec---------ceEEEEeeeccEEEEe
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG---------NGCLTLQYVSHVIIHN 186 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~-v~I~G---------gg~i~i~~a~NVIIrn 186 (491)
|+.+||.+ +..+++++=..|+- ++.|.| ++|+||.|.+.. ..|.+ ...+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888843 23456666566653 477788 468999998854 34432 223556 689999999
Q ss_pred eEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 187 VHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 187 L~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
|+|++..+.+.. ...+.-|+-+. .++++.+.+|.|....|=|++- ...--+.+|++..+
T Consensus 139 LTf~Nta~~g~~------------~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 139 ISIRNDAPTGMA------------FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eEEEecCCCCCC------------CCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 999996432210 01233456654 6899999999999999988752 34455667777644
No 23
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.00 E-value=0.0075 Score=62.38 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=75.8
Q ss_pred EEecCCceEEeecceEE-Eec---------ceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceee
Q 011204 151 LIINSYKTIDGRGANVE-ITG---------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI 220 (491)
Q Consensus 151 L~V~SnkTI~G~Ga~v~-I~G---------gg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI 220 (491)
+.+.-.=||+|+|..-. ..+ ...|++.+++|+.|++|++++.. .| .+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp--------------~w-------~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP--------------FW-------HIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S--------------SE-------SEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC--------------ee-------EEEE
Confidence 44544459999987200 011 11378889999999999999842 12 4788
Q ss_pred eCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecC
Q 011204 221 FGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGV 289 (491)
Q Consensus 221 ~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~ 289 (491)
..++||+|+|.++.. -.||. |+ ..+++|+|.+|.+...+....+.+.. .+|++.+++|..
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~-------~ni~v~n~~~~~ 185 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGS-------GNILVENCTCSG 185 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEE-------CEEEEESEEEES
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCcccccccc-------cceEEEeEEEec
Confidence 899999999999975 35776 74 67899999999999888766554432 178888888853
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.99 E-value=0.037 Score=53.86 Aligned_cols=65 Identities=28% Similarity=0.359 Sum_probs=36.8
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+..++++.|++.+|+.+ ..||.+..++++-|..|.++.+.+|.. ...+.+.+|+
T Consensus 38 i~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~~I~ 93 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNNTIS 93 (236)
T ss_pred EEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCcEEE
Confidence 4555677777777777653 234555555556666666666555543 2333333666
Q ss_pred cceeccCCc
Q 011204 254 NNYFSHHNE 262 (491)
Q Consensus 254 nn~f~~h~k 262 (491)
+|.|.+...
T Consensus 94 ~N~i~~n~~ 102 (236)
T PF05048_consen 94 NNTISNNGY 102 (236)
T ss_pred CCEecCCCc
Confidence 666655443
No 25
>PLN02793 Probable polygalacturonase
Probab=96.95 E-value=0.033 Score=60.36 Aligned_cols=169 Identities=14% Similarity=0.199 Sum_probs=102.7
Q ss_pred eEEEEccCeeEEecceEEecCCceEEeecceEE-----Eec------ce-EEEEeeeccEEEEeeEEEeeccCCCccccC
Q 011204 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVE-----ITG------NG-CLTLQYVSHVIIHNVHIHHCKPSGNTMIAS 202 (491)
Q Consensus 135 r~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v~-----I~G------gg-~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~ 202 (491)
.||.|... +.|.|.-.=||+|+|..-- ... .+ .|.+.+++||.|++|++++..
T Consensus 135 ~~i~~~~~------~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp--------- 199 (443)
T PLN02793 135 KWLYFHGV------NHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ--------- 199 (443)
T ss_pred eEEEEecC------ceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---------
Confidence 46666431 2234433357888885311 000 11 377889999999999999841
Q ss_pred CCCccccCcCCCCCceeeeCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCC
Q 011204 203 SPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG 277 (491)
Q Consensus 203 s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g 277 (491)
.| .+.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.+...+....+....
T Consensus 200 -----~~-------~i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIaik~~s------- 258 (443)
T PLN02793 200 -----QM-------HIAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCISIVGNS------- 258 (443)
T ss_pred -----Ce-------EEEEEccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEEecCCc-------
Confidence 12 3677889999999999975 46776 64 68999999999999998877775431
Q ss_pred eEEEEEeeEecCCCc----c--cCcc-ccCCeEEEEcceEeCCc----ceEe--ecCCCceEEEeCcEEeCCCCC
Q 011204 278 MQVTIAFNHFGVALV----Q--RMPR-CRRGYIHVVNNDFTSWE----MYAI--GGSANPTINSQGNRYTAPPDD 339 (491)
Q Consensus 278 ~~VTihhN~F~~n~~----q--R~Pr-~R~G~vHvvNN~y~nw~----~yai--ggs~~~~I~segNyF~~~~~~ 339 (491)
.+|++.++.+..+.. + +... ...-.+.|-|+.+.+-. .... +++.-..|.+++-+.+...+|
T Consensus 259 ~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~p 333 (443)
T PLN02793 259 SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNP 333 (443)
T ss_pred CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCce
Confidence 367887777643310 0 1110 00114667777776531 1111 111223456666666665554
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.80 E-value=0.021 Score=55.54 Aligned_cols=72 Identities=29% Similarity=0.334 Sum_probs=57.9
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
|.+..++++.|++.++.. ..|+|.+..++++-|+.|+++.+..|.. ...+..++|+
T Consensus 16 i~l~~~~~~~i~~n~i~~----------------------~~~gi~~~~s~~~~I~~n~i~~~~~GI~--~~~s~~~~i~ 71 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISN----------------------SRDGIYVENSDNNTISNNTISNNRYGIH--LMGSSNNTIE 71 (236)
T ss_pred EEEEeCCCCEEEcCEEEe----------------------CCCEEEEEEcCCeEEEeeEEECCCeEEE--EEccCCCEEE
Confidence 788888899998888875 3478888999999999999999988874 4678889999
Q ss_pred cceeccCCce-eeeccC
Q 011204 254 NNYFSHHNEV-MLLGHN 269 (491)
Q Consensus 254 nn~f~~h~k~-mL~G~s 269 (491)
+|.|.+.... +|.+++
T Consensus 72 ~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 72 NNTISNNGYGIYLMGSS 88 (236)
T ss_pred eEEEEccCCCEEEEcCC
Confidence 9999986543 344443
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.77 E-value=0.01 Score=52.35 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=71.2
Q ss_pred CceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccC
Q 011204 216 DGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRM 295 (491)
Q Consensus 216 DaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~ 295 (491)
|||.+.+..++-|++|+|..+....+.+ .++..++|++|.|.+....+.+... .++++.+|.|.++ . +.
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~-~~~~~~~i~n~~i~~~~~gi~~~~~--------~~~~i~~~~~~~~-~-~~ 69 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHV-SGSSNITIENCTISNGGYGIYVSGG--------SNVTISNNTISDN-G-SG 69 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE--SSCESEEES-EEESSTTSEEEECC--------ES-EEES-EEES--S-EE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEE-EcCCCeEEECeEEECCCcEEEEecC--------CCeEEECeEEEEc-c-ce
Confidence 5899999999999999999975555544 5677799999999983333322221 4688899999543 3 34
Q ss_pred ccccC-CeEEEEcceEeCCcceEeecCC-CceEEEeCcEEeCCC
Q 011204 296 PRCRR-GYIHVVNNDFTSWEMYAIGGSA-NPTINSQGNRYTAPP 337 (491)
Q Consensus 296 Pr~R~-G~vHvvNN~y~nw~~yaiggs~-~~~I~segNyF~~~~ 337 (491)
..+.. ..+.+.||.+++-..+++-... .+.+.+++|.|....
T Consensus 70 i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~ 113 (158)
T PF13229_consen 70 IYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNG 113 (158)
T ss_dssp EECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCT
T ss_pred EEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCc
Confidence 44443 4688999999988777776554 567888999999866
No 28
>PLN02197 pectinesterase
Probab=96.68 E-value=0.025 Score=63.23 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=93.6
Q ss_pred Ccchh--hhhhccccCCCCCCCCCCCCCCCc---EEEECCCCCCCCCCCCch---hHHHHHhc----CCCeEEEEccCee
Q 011204 77 DPNWA--ANRQRLADCSVGFAQGTLGGKGGQ---IYVVTDSSDSDPANPTPG---TLRHAVIQ----TEPIWITFASNML 144 (491)
Q Consensus 77 ~~~wa--~~~~~LA~~a~GfG~~ttGG~gG~---vy~VTnl~D~~~~~P~pG---sLR~Av~~----~~Pr~IvF~~sg~ 144 (491)
.|.|- .+|+-|+ +.+.|.++-||..+. .++|.- | |.| |+.+||.. +..|+||+-..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 37775 4566675 356666777777654 244431 1 344 77788843 3346767766776
Q ss_pred EEecceEEec---CCceEEeecceEEEe-c--------c------eEEEEeeeccEEEEeeEEEeeccCCCccccCCCCc
Q 011204 145 IKLKHELIIN---SYKTIDGRGANVEIT-G--------N------GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTH 206 (491)
Q Consensus 145 I~L~~~L~V~---SnkTI~G~Ga~v~I~-G--------g------g~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~ 206 (491)
.++.+.|+ +|+||.|.|..-+|. + + +.+.+ .+++++.+||+|++....
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~----------- 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGP----------- 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCC-----------
Confidence 44667773 699999998764332 1 1 12333 689999999999985310
Q ss_pred cccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 207 VGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 207 ~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
...-|+-+. .++++-+.+|.|....|=|.+- +..--+.+|++..
T Consensus 380 ------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 424 (588)
T PLN02197 380 ------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVN---NGRQFYRNIVVSG 424 (588)
T ss_pred ------CCCceEEEEecCCcEEEEEeEEEecCcceEec---CCCEEEEeeEEEe
Confidence 112344444 5789999999999988877642 2334555666653
No 29
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.55 E-value=0.034 Score=61.59 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=72.9
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeee--------
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM-------- 245 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~-------- 245 (491)
+..+.++|+.|+||+|..-. ....||+.+..++||-|+.|.|+...|- |-++.
T Consensus 264 ~h~~~~~nl~~~nl~I~~~~------------------~~NtDG~d~~sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~ 324 (542)
T COG5434 264 VHPVDCDNLTFRNLTIDANR------------------FDNTDGFDPGSCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKK 324 (542)
T ss_pred EeeecccCceecceEEECCC------------------CCCCCccccccceeEEEeccEEecCCce-EEeecccCCcccc
Confidence 55678999999999997531 1267999999999999999999996553 22221
Q ss_pred ---CCceEEEEcceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccc
Q 011204 246 ---GSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (491)
Q Consensus 246 ---gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~ 298 (491)
.+.+|+|++|+|........+|+.- +.+ .+|++-.|.| .+ ..|.=|+
T Consensus 325 ~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 325 GYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred cccccccEEEecceecccccceEeeeec----CCceeEEEEEeeee-cc-Ccceeee
Confidence 3578999999999766666666542 223 6899999999 44 4455444
No 30
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.54 E-value=0.04 Score=59.68 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=50.1
Q ss_pred ceEEeecceEEEecceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccC--cCCCCCceeeeCCceEEEEeeEee
Q 011204 157 KTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYR--GKSDGDGISIFGSQKIWVDHCSLS 234 (491)
Q Consensus 157 kTI~G~Ga~v~I~Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r--~~~dgDaIsI~gs~nVWIDHcS~S 234 (491)
+||+|.|.+-.=... .|.+++++++.|++.+|++.- ..+..+.......-.+ ......+|.++.++++.|.+++++
T Consensus 122 LtIdGsG~dl~~rdA-gI~v~~a~~v~Iedn~L~gsg-~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~ 199 (455)
T TIGR03808 122 LTLDGGGIPLPQRRG-LIHCQGGRDVRITDCEITGSG-GNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTII 199 (455)
T ss_pred eEEEeCCCcccCCCC-EEEEccCCceEEEeeEEEcCC-cceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEE
Confidence 355555544222223 377889999999999998751 0111111110000000 011234488889999999999999
Q ss_pred cCCCCeeEee
Q 011204 235 YCTDGLIDAI 244 (491)
Q Consensus 235 ~~~DGliDv~ 244 (491)
.+.|+.|-+.
T Consensus 200 g~RD~gi~i~ 209 (455)
T TIGR03808 200 GANDNGIEIL 209 (455)
T ss_pred ccCCCCeEEE
Confidence 9998765543
No 31
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=96.42 E-value=0.001 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.8
Q ss_pred CCCCCCCChhHHHHHHhhhhhhcc
Q 011204 29 TLPHQHPDPDAVAQDVQRRVNVSL 52 (491)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~ 52 (491)
++++|+|||++|+++||+.|+.++
T Consensus 20 a~~aY~pdP~~Vt~~FN~~V~~~~ 43 (56)
T PF04431_consen 20 ALAAYVPDPENVTNEFNRHVHRAM 43 (56)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 578899999999999999999766
No 32
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.35 E-value=0.044 Score=58.76 Aligned_cols=168 Identities=20% Similarity=0.262 Sum_probs=104.3
Q ss_pred eEEEEccCeeEEecceEEecCCceEEeecceEE------Ee-c---ce-EEEEeeeccEEEEeeEEEeeccCCCccccCC
Q 011204 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVE------IT-G---NG-CLTLQYVSHVIIHNVHIHHCKPSGNTMIASS 203 (491)
Q Consensus 135 r~IvF~~sg~I~L~~~L~V~SnkTI~G~Ga~v~------I~-G---gg-~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s 203 (491)
.||.|.. ...|.|...=||+|+|..-- .. . .+ .|.+..++||.|++|++++..
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp---------- 177 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK---------- 177 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----------
Confidence 4777741 13355555568888886310 00 0 11 367889999999999999852
Q ss_pred CCccccCcCCCCCceeeeCCceEEEEeeEeec-----CCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCe
Q 011204 204 PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGM 278 (491)
Q Consensus 204 ~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~-----~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~ 278 (491)
.| .+.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|...+....+.... .
T Consensus 178 ----~w-------~i~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 178 ----FF-------HIALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----Ce-------EEEEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 12 4778899999999999886 46776 74 78999999999999998877775432 2
Q ss_pred EEEEEeeEecCCC------cccCcc-ccCCeEEEEcceEeCCcceEee---------cCCCceEEEeCcEEeCCCCC
Q 011204 279 QVTIAFNHFGVAL------VQRMPR-CRRGYIHVVNNDFTSWEMYAIG---------GSANPTINSQGNRYTAPPDD 339 (491)
Q Consensus 279 ~VTihhN~F~~n~------~qR~Pr-~R~G~vHvvNN~y~nw~~yaig---------gs~~~~I~segNyF~~~~~~ 339 (491)
+|++.++....+. ..+.+- -....+.+-|+.+++-. +++. ++.-..|.+++-.++....|
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 6777766663221 000000 00125677787776632 1111 11123566677777666554
No 33
>PLN02665 pectinesterase family protein
Probab=96.26 E-value=1.1 Score=47.62 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=79.2
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Eecc-----------eEEEEeeeccEEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN-----------GCLTLQYVSHVII 184 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~Gg-----------g~i~i~~a~NVII 184 (491)
|+.+||.. +..++|++-..|+ .++.|.| ++|+||.|++...+ |... ..+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 67777743 3346667666675 3467777 36899999976533 3221 22344 7899999
Q ss_pred EeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCcee
Q 011204 185 HNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVM 264 (491)
Q Consensus 185 rnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~m 264 (491)
+||+|++..+...+ -......-|+.+ .++++-+.+|.|....|=|.+- ...--+.+|++...-. .
T Consensus 159 ~nitf~Nta~~~~~----------~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG~VD-F 223 (366)
T PLN02665 159 ANIIIKNSAPRPDG----------KRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEGTVD-F 223 (366)
T ss_pred EeeEEEeCCCCcCC----------CCCCcceEEEEE-cCCcEEEEcceeccccceeEeC---CCCEEEEeeEEeeccc-e
Confidence 99999996431110 000012234444 4688999999999999988762 2345566777764422 2
Q ss_pred eeccC
Q 011204 265 LLGHN 269 (491)
Q Consensus 265 L~G~s 269 (491)
++|..
T Consensus 224 IFG~g 228 (366)
T PLN02665 224 IFGSG 228 (366)
T ss_pred ecccc
Confidence 44544
No 34
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.24 E-value=0.26 Score=49.70 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=74.7
Q ss_pred hhHHHHHhcCCCeEEEEccCeeEEec----ceEEecCCceEEeecc-----eEE---------Eecce------EEEEee
Q 011204 123 GTLRHAVIQTEPIWITFASNMLIKLK----HELIINSYKTIDGRGA-----NVE---------ITGNG------CLTLQY 178 (491)
Q Consensus 123 GsLR~Av~~~~Pr~IvF~~sg~I~L~----~~L~V~SnkTI~G~Ga-----~v~---------I~Ggg------~i~i~~ 178 (491)
-|+.+|+.+..|-.+|.=..|+-+-. -+|.+++.+||.|... .+. |.|.+ .++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 37888887766554444455665433 2577888899988533 122 22322 245666
Q ss_pred eccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecC-CCCeeEee----eCCceEEEE
Q 011204 179 VSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC-TDGLIDAI----MGSTGITIS 253 (491)
Q Consensus 179 a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~-~DGliDv~----~gS~~ITIS 253 (491)
.++..|++++|++..+ ..+-||.|+++ +.-|..|+|+.+ .+|..... ....+++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888888888887421 24567888777 888999999997 56643221 134567777
Q ss_pred cceecc
Q 011204 254 NNYFSH 259 (491)
Q Consensus 254 nn~f~~ 259 (491)
.|.+..
T Consensus 157 GN~~~~ 162 (246)
T PF07602_consen 157 GNSIYF 162 (246)
T ss_pred cceEEe
Confidence 777664
No 35
>PLN02304 probable pectinesterase
Probab=96.17 E-value=2 Score=46.02 Aligned_cols=119 Identities=15% Similarity=0.249 Sum_probs=76.9
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEE-ec------------ceEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TG------------NGCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I-~G------------gg~i~i~~a~NVI 183 (491)
|+.+||.. +..+++|+=..|+ .++.|.| ++|+||.|+|..-++ .. -+.+++ .++|++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 67778743 2345666656675 3467777 479999999876333 21 112334 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
.+||+|++..+... + +....-|+-+. .++++-+.+|.|....|=|.+- ...--+.+|++...
T Consensus 166 a~nITf~Nta~~~~------~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 166 AKNISFMNVAPIPK------P------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGS 228 (379)
T ss_pred EEeeEEEecCCCCC------C------CCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccc
Confidence 99999998643110 0 01122344444 4789999999999999988752 33455678887754
No 36
>PLN02634 probable pectinesterase
Probab=96.04 E-value=2.6 Score=44.85 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=73.6
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe-c----------c--------eEEEEe
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G----------N--------GCLTLQ 177 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~-G----------g--------g~i~i~ 177 (491)
|..+||.. +..+++|+-..|+ .++.|.| ++|+||.|.|...+|. . + ..+++
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 45556632 2335555555665 4466777 4799999998775543 1 0 12334
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcce
Q 011204 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNY 256 (491)
Q Consensus 178 ~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~ 256 (491)
.+++++.+||+|++..+... .+ ...+-++-+. .++++-+.+|.|....|=|.+- ...--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------CC---CCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 68999999999998643110 01 1122344433 4688999999999988888752 3445566777
Q ss_pred eccC
Q 011204 257 FSHH 260 (491)
Q Consensus 257 f~~h 260 (491)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 7644
No 37
>PLN02176 putative pectinesterase
Probab=95.96 E-value=0.16 Score=53.46 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=76.7
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe---------cceEEEEeeeccEEEEee
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT---------GNGCLTLQYVSHVIIHNV 187 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~---------Ggg~i~i~~a~NVIIrnL 187 (491)
|..+||.. +..+++|+-..|+- ++.|.| ++|+||.|.|...+|. +.+.+++ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 56677632 33466677667764 467777 3699999998764443 1223555 7899999999
Q ss_pred EEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 188 ~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
+|++..+..+. .....+-++-+. .++++-+.+|.|....|=|.+- ...--+.+|++..+
T Consensus 130 T~~Nt~~~~~~-----------~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIASN-----------SSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccCC-----------CCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEec
Confidence 99986431100 001123344444 4789999999999988888752 34555667777644
No 38
>PLN02682 pectinesterase family protein
Probab=95.64 E-value=0.2 Score=53.28 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=74.8
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe-c----------c--------eEEEEe
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G----------N--------GCLTLQ 177 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~-G----------g--------g~i~i~ 177 (491)
|..+||.. +..+++|+=..|+ .++.|.| ++|+||.|.|..-+|. . + ..+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 66677742 2335555555565 3466777 4799999998763332 1 0 12334
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcce
Q 011204 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNY 256 (491)
Q Consensus 178 ~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~ 256 (491)
.+++++.+||+|++..+... + | ..+.-|+-+. .++++-+.+|.|....|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~------~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP------P---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccCC------C---C---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 68899999999998642100 0 0 1122344443 4799999999999999988762 3455667777
Q ss_pred eccC
Q 011204 257 FSHH 260 (491)
Q Consensus 257 f~~h 260 (491)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 7754
No 39
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.64 E-value=0.16 Score=56.58 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=74.2
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEE-ecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I-~Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..++||+-..|+- ++.+.| .+|+||.|.|...+| .+. +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67777743 44577777777753 466777 369999999976443 331 12444 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
.+||+|++..... ...--|+.+ .++++-+-+|.|....|=|.+ .+..--..+|++..
T Consensus 321 a~nitf~Ntag~~---------------~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~---~~~Rqyy~~C~I~G 377 (541)
T PLN02416 321 ARDITIENTAGPE---------------KHQAVALRV-NADLVALYRCTINGYQDTLYV---HSFRQFYRECDIYG 377 (541)
T ss_pred EEeeEEEECCCCC---------------CCceEEEEE-cCccEEEEcceEecccchhcc---CCCceEEEeeEEee
Confidence 9999999853100 112234444 468899999999988887764 23445566666654
No 40
>PLN02497 probable pectinesterase
Probab=95.55 E-value=3.9 Score=43.13 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=74.8
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Ee--------cceEEEEeeeccEEEEee
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-IT--------GNGCLTLQYVSHVIIHNV 187 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~--------Ggg~i~i~~a~NVIIrnL 187 (491)
|+.+||.. +..+++++-..|+ .++.|.| ++++||.|+|..-+ |. +.+.+++ .++|++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 45666632 3345555555664 4566777 47999999987622 32 1123444 7899999999
Q ss_pred EEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 188 ~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
+|++...... . + ....+.-++-+. .++++-+.+|.|....|=|.+- ...--..+|++..+
T Consensus 123 T~~Nt~~~~~--------~-~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG~ 183 (331)
T PLN02497 123 TFANSYNFPS--------K-G-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQGA 183 (331)
T ss_pred EEEeCCCCcc--------c-c-CCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEec
Confidence 9998642100 0 0 001122344444 5789999999999999988752 34456667777643
No 41
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.51 E-value=0.2 Score=55.60 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=73.2
Q ss_pred hHHHHHhc-----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEE-ecc------------eEEEEeeeccE
Q 011204 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TGN------------GCLTLQYVSHV 182 (491)
Q Consensus 124 sLR~Av~~-----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I-~Gg------------g~i~i~~a~NV 182 (491)
|..+||.. +..+++|+-..|+ .++.+.| .+|+||.|.|..-+| ++. +.+.+ .++|+
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGT--YHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCe--eEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 67778852 2346777767776 3466777 479999999876444 321 12333 78999
Q ss_pred EEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 183 IIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
+.+||+|++..... ....-|+.+ .++++.+.+|.|....|=|.+- +..--..+|++..
T Consensus 316 ~a~nitf~Ntag~~---------------~~QAVALrv-~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 373 (529)
T PLN02170 316 IARDITFVNSAGPN---------------SEQAVALRV-GSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDITG 373 (529)
T ss_pred EEEeeEEEecCCCC---------------CCceEEEEe-cCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEcc
Confidence 99999999853100 012233444 4788999999999988877652 2334456666653
No 42
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=95.51 E-value=0.2 Score=55.49 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=71.5
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecceEE-Eecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVE-ITGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~-I~Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..+++|+-..|+- ++.+.|+ +|+||.|.|..-+ |.+. +.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 67777743 23356666566753 4667773 5899999987633 3321 12333 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
.+||+|++.... ...-++-+. .+++.-+.+|.|....|=|.+- +..--..+|++..
T Consensus 297 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 353 (520)
T PLN02201 297 ARDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH---TMRQFYRECRITG 353 (520)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeC---CCCEEEEeeEEee
Confidence 999999985321 112344444 4689999999999988877652 2233445666653
No 43
>PLN02432 putative pectinesterase
Probab=95.50 E-value=0.24 Score=51.13 Aligned_cols=130 Identities=14% Similarity=0.254 Sum_probs=81.7
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe-c--------ceEEEEeeeccEEEEee
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G--------NGCLTLQYVSHVIIHNV 187 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~-G--------gg~i~i~~a~NVIIrnL 187 (491)
|+.+||.. +..+++||-..|+ .++.|.| ++|+||.|.+..-+|. . ...+++ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~--Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGI--YREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 56677742 3335555555664 3566777 4799999998664443 1 122444 7899999999
Q ss_pred EEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeee
Q 011204 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLL 266 (491)
Q Consensus 188 ~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~ 266 (491)
+|++.... .+-++-+. .++++-+.+|.|....|=|++ ....--+.+|++..+-. .++
T Consensus 102 t~~Nt~g~------------------~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~---~~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFGS------------------SGKAVALRVAGDRAAFYGCRILSYQDTLLD---DTGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCCC------------------CCceEEEEEcCCcEEEEcceEecccceeEE---CCCCEEEEeCEEEeccc-EEe
Confidence 99985321 12244433 478999999999999998875 23445666777774422 344
Q ss_pred ccCCcccCCCCeEEEEEeeEe
Q 011204 267 GHNDKYALDMGMQVTIAFNHF 287 (491)
Q Consensus 267 G~sds~~~D~g~~VTihhN~F 287 (491)
|.. ++-|++|.+
T Consensus 160 G~g---------~a~Fe~c~i 171 (293)
T PLN02432 160 GNA---------ASLFEKCHL 171 (293)
T ss_pred cCc---------eEEEEeeEE
Confidence 543 445555555
No 44
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=95.45 E-value=0.22 Score=54.94 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=71.1
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe-cc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-GN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~-Gg------------g~i~i~~a~NVI 183 (491)
|..+||.+ +..+++|+-..|+ .++.|.| ++|+||.|.|..-+|. +. +.+.+ .+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 67777743 3346666666675 3466777 3699999999774443 21 11223 688999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceec
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFS 258 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~ 258 (491)
.+||+|++... ...+-|+-+. .+++.-+.+|.|....|=|.+- +..--..+|++.
T Consensus 288 A~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~---~~RqyyrdC~I~ 343 (509)
T PLN02488 288 GIDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYPH---RDRQFYRECFIT 343 (509)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceeeC---CCCEEEEeeEEe
Confidence 99999998531 0123455554 5789999999999887766531 233344455554
No 45
>PLN02773 pectinesterase
Probab=95.37 E-value=1.5 Score=45.78 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=70.2
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Eec-----------------c-----eE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG-----------------N-----GC 173 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~G-----------------g-----g~ 173 (491)
|+.+||.. +..+++||=..|+ ..+.|.| +.|+||.|++..-+ |.. . +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 66777742 2335555555665 3466777 35899999886533 221 0 12
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+ .++|++.+||+|++..+.+ ...--++.+ .++++-+.+|.|....|=|.+- ...--+.
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~~---------------~gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~---~gr~yf~ 156 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPEG---------------SGQAVAIRV-TADRCAFYNCRFLGWQDTLYLH---YGKQYLR 156 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCC---------------CCcEEEEEe-cCccEEEEccEeecccceeEeC---CCCEEEE
Confidence 334 6899999999999863211 112233444 4688999999999888877641 2344555
Q ss_pred cceeccC
Q 011204 254 NNYFSHH 260 (491)
Q Consensus 254 nn~f~~h 260 (491)
+|++..+
T Consensus 157 ~c~IeG~ 163 (317)
T PLN02773 157 DCYIEGS 163 (317)
T ss_pred eeEEeec
Confidence 6666543
No 46
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=95.34 E-value=0.26 Score=55.50 Aligned_cols=114 Identities=13% Similarity=0.197 Sum_probs=72.9
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecceEEE-ecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVEI-TGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~I-~Gg------------g~i~i~~a~NVI 183 (491)
|..+||.. +..++||+-..|+- ++.+.|+ +|+||.|.|..-+| .+. +.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 67778743 23466666666753 4667773 59999999976443 321 12333 789999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
.+||+|++.... ...-++-+. .++++-+.+|.|....|=|.+- +..--+.+|++...
T Consensus 376 a~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~Gt 433 (596)
T PLN02745 376 AKSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITGT 433 (596)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEee
Confidence 999999985310 112334433 5789999999999988877642 23345556666543
No 47
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=95.26 E-value=0.24 Score=56.34 Aligned_cols=98 Identities=15% Similarity=0.231 Sum_probs=63.9
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecceEEEe-cc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVEIT-GN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~I~-Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..|+||+-..|+ .++.+.|+ .|+||.|.|..-+|. +. +.+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 66777743 3346666656664 34667774 588999998764443 21 12334 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCee
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLI 241 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGli 241 (491)
.|||+|++... ....-++-++ .+++.-+.+|.|....|=|.
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy 382 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLY 382 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhc
Confidence 99999998531 0122344444 57899999999988777554
No 48
>PLN02916 pectinesterase family protein
Probab=95.26 E-value=0.27 Score=54.24 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=71.8
Q ss_pred hHHHHHhc-------CCCeEEEEccCeeEEecceEEec---CCceEEeecceEEEe-c------c------eEEEEeeec
Q 011204 124 TLRHAVIQ-------TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVEIT-G------N------GCLTLQYVS 180 (491)
Q Consensus 124 sLR~Av~~-------~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~I~-G------g------g~i~i~~a~ 180 (491)
|..+||.. +..+++|+-..|+- ++.+.|+ +|+||.|.|..-+|. + + +.+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 67777732 23467777667753 4667773 689999998764433 2 1 12333 689
Q ss_pred cEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 181 NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
+++.+||+|++...+ ...-|+-+. .+++.-+.+|.|....|=|.+- +..--..+|++..
T Consensus 278 ~F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 337 (502)
T PLN02916 278 GFWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIYG 337 (502)
T ss_pred CEEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEec
Confidence 999999999985311 112334333 4688999999999988877642 2334456666653
No 49
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.25 E-value=0.091 Score=49.50 Aligned_cols=120 Identities=28% Similarity=0.355 Sum_probs=65.8
Q ss_pred CceEEeecceEEEecceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCC-ceeeeC-CceEEEEeeEe
Q 011204 156 YKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGD-GISIFG-SQKIWVDHCSL 233 (491)
Q Consensus 156 nkTI~G~Ga~v~I~Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgD-aIsI~g-s~nVWIDHcS~ 233 (491)
+++|+|.+....=... .+.+..++|+.|+|++++++...+ ..+.. ...+... ..... ++.+++ ..+++++.|.+
T Consensus 98 nl~i~~~~~~~~~~~~-~i~~~~~~~~~i~nv~~~~~~~~~-i~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 98 NLTIDGNGIDPNNNNN-GIRFNSSQNVSISNVRIENSGGDG-IYFNT-GTDYRII-GSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEETCGCE-SCEE-EEEETTEEEEEEEEEEEES-SS-S-EEEEC-CEECEEE-CCEEEEEEEEESCEEEEEEECEEE
T ss_pred eeEEEcccccCCCCce-EEEEEeCCeEEEEeEEEEccCccE-EEEEc-cccCcEe-ecccceeeeeccceeEEEECCccc
Confidence 5778877544210012 377878999999999999853110 01100 0000000 00011 444543 34455577777
Q ss_pred ecCCCCeeEeeeCCceEEEEcceecc-CCcee-eeccCCcccCCCCeEEEEEeeEecCCCc
Q 011204 234 SYCTDGLIDAIMGSTGITISNNYFSH-HNEVM-LLGHNDKYALDMGMQVTIAFNHFGVALV 292 (491)
Q Consensus 234 S~~~DGliDv~~gS~~ITISnn~f~~-h~k~m-L~G~sds~~~D~g~~VTihhN~F~~n~~ 292 (491)
..+.+| + ..+.++++|+||.|.. ..... +-+. .++++.+|.| ++|.
T Consensus 174 ~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~---------~~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 174 NGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGG---------SNIIISNNTI-ENCD 221 (225)
T ss_dssp ESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEEC---------SEEEEEEEEE-ESSS
T ss_pred cCCCce-e--EeecceEEEEeEEECCccceeEEEECC---------eEEEEEeEEE-ECCc
Confidence 778888 2 3455899999999986 33322 2222 2578888888 5554
No 50
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=95.23 E-value=0.26 Score=54.82 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=73.7
Q ss_pred hHHHHHhc------CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Eecc------------eEEEEeeecc
Q 011204 124 TLRHAVIQ------TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVSH 181 (491)
Q Consensus 124 sLR~Av~~------~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~Gg------------g~i~i~~a~N 181 (491)
|..+||.. +..|++|+-..|+ .++.+.| ++|+|+.|.|..-+ |.+. ..+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGI--YQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCE--eEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 67778743 2235666656675 3456777 36999999997644 4321 11233 6899
Q ss_pred EEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 182 VIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 182 VIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
++.+||+|++... ...+-|+-+. .+++..+.+|.|....|=|.+- +..--..+|++...
T Consensus 314 F~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~Gt 373 (539)
T PLN02995 314 FIAKGITFRNTAG-----------------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIYGT 373 (539)
T ss_pred eEEEeeEEEeCCC-----------------CCCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEeec
Confidence 9999999998531 0122445544 5789999999999988877642 23345666666643
No 51
>smart00656 Amb_all Amb_all domain.
Probab=95.22 E-value=0.55 Score=45.23 Aligned_cols=136 Identities=20% Similarity=0.200 Sum_probs=79.5
Q ss_pred CCceEEeecceEEEecceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCc-eeee-CCceEEEEeeE
Q 011204 155 SYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDG-ISIF-GSQKIWVDHCS 232 (491)
Q Consensus 155 SnkTI~G~Ga~v~I~Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDa-IsI~-gs~nVWIDHcS 232 (491)
.|++|.+...... .++-.|.+.+++||.|.+.+|.+.... +. .....|+ +.+. ++.+|=|-.|.
T Consensus 45 rnl~i~~~~~~~~-~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~-~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPVYG-SDGDAISIDGSSNVWIDHVSLSGCTVT------------GF-GDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccCCC-CCCCEEEEeCCCeEEEEccEeEcceec------------cC-CCCCCCccEEECcccccEEEECce
Confidence 4677776432110 122248888899999999999874211 11 0112344 4444 57888888888
Q ss_pred eecCCCCeeEeeeCC------ceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCcccc-CCeEEE
Q 011204 233 LSYCTDGLIDAIMGS------TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RGYIHV 305 (491)
Q Consensus 233 ~S~~~DGliDv~~gS------~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R-~G~vHv 305 (491)
|....-+++--...+ ..||+.+|+|.+...-+- . -+.-++-+.+|+| .|..+..--+| .+.+.+
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P-----~---~r~g~~hv~NN~~-~n~~~~~~~~~~~~~v~~ 181 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAP-----R---VRFGYVHVYNNYY-TGWTSYAIGGRMGATILS 181 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCcccCCC-----c---ccCCEEEEEeeEE-eCcccEeEecCCCcEEEE
Confidence 876544444211111 279999999986432111 0 1112678889999 45443333333 357999
Q ss_pred EcceEeCC
Q 011204 306 VNNDFTSW 313 (491)
Q Consensus 306 vNN~y~nw 313 (491)
-||||++.
T Consensus 182 E~N~F~~~ 189 (190)
T smart00656 182 EGNYFEAP 189 (190)
T ss_pred ECeEEECC
Confidence 99999863
No 52
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.22 E-value=0.31 Score=54.27 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=65.5
Q ss_pred hHHHHHhc---CC----CeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Eecc------------eEEEEeeec
Q 011204 124 TLRHAVIQ---TE----PIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVS 180 (491)
Q Consensus 124 sLR~Av~~---~~----Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~Gg------------g~i~i~~a~ 180 (491)
|+.+||.. .. -|+||+-..|+- ++.|.| ..|+||.|.|..-+ |.+. +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67777742 11 267777777764 466777 47999999987643 3321 12333 679
Q ss_pred cEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeE
Q 011204 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLID 242 (491)
Q Consensus 181 NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliD 242 (491)
+++.+||+|++... + ...-|+-+. .++.+-+.+|+|....|=|.+
T Consensus 314 ~F~a~~it~~Ntag--~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~ 359 (538)
T PLN03043 314 RFVAVDVTFRNTAG--P---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYV 359 (538)
T ss_pred CEEEEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeccCccccc
Confidence 99999999998531 0 122345444 578899999999988776553
No 53
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=95.20 E-value=0.31 Score=54.12 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=71.5
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Eecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~Gg------------g~i~i~~a~NVI 183 (491)
|..+||.. +..+++|+-..|+-+ +.+.| ++|+||.|.|..-+ |.+. +.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 56667742 233555555566543 66777 36899999987633 3321 12333 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
.+||+|++.... ...-|+-+. .++++-+.+|.|....|=|.+- +..--..+|++..+
T Consensus 309 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~---~~Rqyy~~C~IeGt 366 (530)
T PLN02933 309 AKDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVH---SAKQFYRECDIYGT 366 (530)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEecccccccC---CCceEEEeeEEecc
Confidence 999999985310 112344444 5789999999999988877642 23345566666543
No 54
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=95.04 E-value=0.29 Score=54.57 Aligned_cols=113 Identities=13% Similarity=0.267 Sum_probs=72.4
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe-cc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-GN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~-Gg------------g~i~i~~a~NVI 183 (491)
|..+||.. +..|+|||-..|+ .++.+.| .+|+||.|.|...+|. +. +.+.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 67777743 3346777767776 4466777 3699999999764442 21 11223 679999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
.+||+|++... . ...-++-+. .++++-+.+|.|....|=|.+- +..--..+|++..
T Consensus 327 a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~G 383 (548)
T PLN02301 327 AQDIWFQNTAG--P---------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAH---SLRQFYRDSYITG 383 (548)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeeeeccccceec---CCcEEEEeeEEEe
Confidence 99999998531 0 112334433 4789999999999888876641 2334555666553
No 55
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=95.03 E-value=0.37 Score=54.08 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=69.7
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecceEE-Eec------c--e-----EEEEeeeccE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVE-ITG------N--G-----CLTLQYVSHV 182 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~-I~G------g--g-----~i~i~~a~NV 182 (491)
|..+||.. +..++||+-..|+ .++.+.|+ +|+||.|.|..-+ |.+ + + .+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGV--YNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCce--eEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 67777743 2335666656664 34667773 6999999987633 332 1 1 1233 68999
Q ss_pred EEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceec
Q 011204 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFS 258 (491)
Q Consensus 183 IIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~ 258 (491)
+.+||+|++... ....-++-+. .+++.-+.+|.|....|=|.+- +..--..+|++.
T Consensus 350 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 406 (572)
T PLN02990 350 TAKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYVH---SHRQFFRDCTVS 406 (572)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhccC---CCcEEEEeeEEe
Confidence 999999998531 0122345544 5788999999999877766541 223334455554
No 56
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=95.00 E-value=0.36 Score=54.25 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=70.9
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecc-eEEe---cCCceEEeecceEE-Eecce------------EEEEeeeccE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKH-ELII---NSYKTIDGRGANVE-ITGNG------------CLTLQYVSHV 182 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~-~L~V---~SnkTI~G~Ga~v~-I~Ggg------------~i~i~~a~NV 182 (491)
|+.+||.. +..++||+-..|+-+ + .|.| .+|+||.|.|..-+ |.+.. .+.+ .++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 56677743 334666666667533 4 3777 36999999987644 33311 1233 68999
Q ss_pred EEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 183 IIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
+.|||+|++...+ ...-|+-+. .+++.-+.+|.|....|=|.+- +..--..+|++..
T Consensus 363 ~a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~G 420 (587)
T PLN02484 363 IARDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVH---SNRQFFRECDIYG 420 (587)
T ss_pred EEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccC---CCcEEEEecEEEe
Confidence 9999999985321 112344444 5788999999999888866642 2333455555553
No 57
>PLN02314 pectinesterase
Probab=94.97 E-value=0.31 Score=54.79 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=71.1
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEE-ecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I-~Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..|+||+-..|+ .++.+.| ..|+|+.|.|..-+| .+. +.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGT--YVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCce--EEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 67777743 3346667766776 3466667 368999999876433 321 12333 789999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceec
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFS 258 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~ 258 (491)
.+||+|++.... ...-++-++ +++..-+.+|.|....|=|.+ .+..--..+|++.
T Consensus 369 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~---~~~rq~y~~C~I~ 424 (586)
T PLN02314 369 AKDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA---HSNRQFYRDCDIT 424 (586)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchhee---CCCCEEEEeeEEE
Confidence 999999985310 112344444 578999999999988876654 1233344555554
No 58
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.97 E-value=0.31 Score=54.24 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=73.2
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEE-ecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I-~Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..|+|||-..|+ .++.+.| .+|+||.|.|..-+| .+. +.+. ..+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~Gv--Y~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGV--YKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVA-VSGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEE-EEcCCeE
Confidence 66777743 3446677766775 3455666 379999999876333 321 1122 3789999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccC
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h 260 (491)
.+||+|++..... ...--|+.+ .++++-+.+|.|....|=|.+- +..--..+|++...
T Consensus 323 a~nit~~Ntag~~---------------~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~Gt 380 (537)
T PLN02506 323 ARDITFRNTAGPQ---------------NHQAVALRV-DSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIYGT 380 (537)
T ss_pred EEeeEEEeCCCCC---------------CCceEEEEe-cCCcEEEEcceeecccccceec---CCceEEEeeEEecc
Confidence 9999999853100 112234444 4789999999999988877642 23445667776643
No 59
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=94.89 E-value=0.36 Score=54.08 Aligned_cols=112 Identities=17% Similarity=0.246 Sum_probs=70.7
Q ss_pred hHHHHHhc-------CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEE-Eecc------------eEEEEeeec
Q 011204 124 TLRHAVIQ-------TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVS 180 (491)
Q Consensus 124 sLR~Av~~-------~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~-I~Gg------------g~i~i~~a~ 180 (491)
|..+||.. +..++||+-..|+- ++.|.| ++|+||.|.|..-+ |.+. +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 66677742 12356666666763 466777 46899999987643 3321 12344 679
Q ss_pred cEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceec
Q 011204 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFS 258 (491)
Q Consensus 181 NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~ 258 (491)
+++.+||+|++.... ...-|+-+. .++..-+.+|.|....|=|.+- +..--..+|++.
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~ 399 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTH---SLRQFYRECDIY 399 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEEC---CCCEEEEeeEEe
Confidence 999999999985310 112344444 5788899999999888876642 233455556554
No 60
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.74 E-value=0.41 Score=53.51 Aligned_cols=98 Identities=11% Similarity=0.184 Sum_probs=64.1
Q ss_pred hHHHHHhc-----CCCeEEEEccCeeEEecceEEe---cCCceEEeecceEEEe-c-------c------eEEEEeeecc
Q 011204 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G-------N------GCLTLQYVSH 181 (491)
Q Consensus 124 sLR~Av~~-----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga~v~I~-G-------g------g~i~i~~a~N 181 (491)
|..+||.. ...|.||+-..|+- ++.+.| ..|+||.|.|..-+|. + + ..+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 66777732 13466666667753 456666 4699999998764433 2 1 12333 6899
Q ss_pred EEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCee
Q 011204 182 VIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLI 241 (491)
Q Consensus 182 VIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGli 241 (491)
++.+||+|++... + ...-|+-++ .++++.+.+|.|....|=|.
T Consensus 332 f~a~~it~~Ntag--~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 375 (553)
T PLN02708 332 FMARDLTIQNTAG--P---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLY 375 (553)
T ss_pred eEEEeeEEEcCCC--C---------------CCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 9999999998521 0 112345544 57899999999998777555
No 61
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=94.54 E-value=0.43 Score=53.42 Aligned_cols=113 Identities=10% Similarity=0.161 Sum_probs=70.1
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecceEEE-ec-------c-----eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVEI-TG-------N-----GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~I-~G-------g-----g~i~i~~a~NVI 183 (491)
|..+||.. +..++||+-..|+- ++.+.|+ .|+||.|.|..-+| .+ . +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 66677743 33356666566753 4667773 58999999876433 21 1 12233 679999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
.|||+|++.... ...-|+-+. .++++-+.+|.|....|=|.+- +..--..+|++..
T Consensus 349 a~~itf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~---~~rq~y~~C~I~G 405 (565)
T PLN02468 349 ARDMGFRNTAGP-----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYAH---AQRQFYRECNIYG 405 (565)
T ss_pred EEEEEEEeCCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccchhccC---CCceEEEeeEEec
Confidence 999999985310 112344444 5789999999999888766531 2233455666553
No 62
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=94.46 E-value=0.51 Score=53.09 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=63.4
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecceEEEe-cc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGANVEIT-GN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~v~I~-Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..|+||+-..|+ .++.+.|+ .|+||.|.|..-+|. +. +.+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 66777743 3346666666675 34667773 699999998774433 21 12233 679999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCceEEEEeeEeecCCCCee
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLI 241 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcS~S~~~DGli 241 (491)
.+||+|++... + ...-++-+. .+++.-+.+|+|....|=|.
T Consensus 366 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy 407 (587)
T PLN02313 366 ARDITFQNTAG--P---------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLY 407 (587)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeEecccchhc
Confidence 99999998531 0 112344443 57889999999998766554
No 63
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=93.96 E-value=0.74 Score=47.57 Aligned_cols=123 Identities=15% Similarity=0.249 Sum_probs=70.8
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEec---CCceEEeecce-EEEecc------------eEEEEeeeccEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGAN-VEITGN------------GCLTLQYVSHVI 183 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V~---SnkTI~G~Ga~-v~I~Gg------------g~i~i~~a~NVI 183 (491)
|+.+||.. +..+++||-..|+- ++.|.|+ +++||.|.+.. ..|.+. +.+.+ .++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67777743 33466677677754 4677884 69999999876 334432 12444 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCce
Q 011204 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEV 263 (491)
Q Consensus 184 IrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~ 263 (491)
.+||+|++... . .....-|+.+ .++++.+.+|.|....|-|.. .....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~g--------------~-~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTAG--------------P-SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHCS--------------G-SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCCC--------------C-cccceeeeee-cCCcEEEEEeEEccccceeee---ccceeEEEeeEEEecCc-
Confidence 99999998531 0 0123346666 458899999999999998874 23466778888875422
Q ss_pred eeeccC
Q 011204 264 MLLGHN 269 (491)
Q Consensus 264 mL~G~s 269 (491)
.++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 355543
No 64
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.69 E-value=1.4 Score=46.68 Aligned_cols=131 Identities=22% Similarity=0.289 Sum_probs=74.1
Q ss_pred ceEEecCCceEEeecceEEEecce---EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCC-ceeee-CC
Q 011204 149 HELIINSYKTIDGRGANVEITGNG---CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGD-GISIF-GS 223 (491)
Q Consensus 149 ~~L~V~SnkTI~G~Ga~v~I~Ggg---~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgD-aIsI~-gs 223 (491)
..++|+.-+|+-|.-. .++.|++ .+++ .+.+||||+|++|+.-. ...+-| +|-+. .+
T Consensus 45 g~~vInr~l~l~ge~g-a~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg~----------------~lp~m~agI~v~~~a 106 (408)
T COG3420 45 GNFVINRALTLRGENG-AVLDGGGKGSYVTV-AAPDVIVEGLTVRGSGR----------------SLPAMDAGIFVGRTA 106 (408)
T ss_pred ccEEEccceeeccccc-cEEecCCcccEEEE-eCCCceeeeEEEecCCC----------------CcccccceEEeccCc
Confidence 4566666666666522 2343322 3666 78999999999996311 011222 23332 46
Q ss_pred ceEEEEeeEeecCCCCeeEeeeCCceEEEEcceec-----------------cCCceeeeccCCcccCCCCeEEEEEeeE
Q 011204 224 QKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFS-----------------HHNEVMLLGHNDKYALDMGMQVTIAFNH 286 (491)
Q Consensus 224 ~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~-----------------~h~k~mL~G~sds~~~D~g~~VTihhN~ 286 (491)
+.--|.||.+..+.-|.. .+++..+-|--|.+. +...+...|..-+|.+|--.-=|=+||.
T Consensus 107 t~A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~ 184 (408)
T COG3420 107 TGAVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNV 184 (408)
T ss_pred ccceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccce
Confidence 666677777666666654 355555555555544 1223344444445555532233458888
Q ss_pred ecCCCcccCccccCCe
Q 011204 287 FGVALVQRMPRCRRGY 302 (491)
Q Consensus 287 F~~n~~qR~Pr~R~G~ 302 (491)
|..| |+-.+|||.
T Consensus 185 ~~gn---r~~~~Rygv 197 (408)
T COG3420 185 FKGN---RFRDLRYGV 197 (408)
T ss_pred eccc---chhheeeeE
Confidence 8544 888889874
No 65
>PLN02671 pectinesterase
Probab=93.49 E-value=1.5 Score=46.54 Aligned_cols=119 Identities=12% Similarity=0.144 Sum_probs=73.0
Q ss_pred hHHHHHhc----CCCeEEEEccCeeEEecceEEe---cCCceEEeecc---eEEEec----------c--------eEEE
Q 011204 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGA---NVEITG----------N--------GCLT 175 (491)
Q Consensus 124 sLR~Av~~----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga---~v~I~G----------g--------g~i~ 175 (491)
|..+||.. +..+++|+=..|+ .++.|.| ++++||.|.|. +..|.. + ..++
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 55666632 2234555555564 4467777 47999999874 344541 0 1233
Q ss_pred EeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcc
Q 011204 176 LQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN 255 (491)
Q Consensus 176 i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn 255 (491)
+ .+++++.+||+|++..+... +- .....-|+.+ .++++-+.+|.|....|=|++- ...--+.+|
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~----------g~-~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C 214 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP----------GG-QGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQC 214 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC----------CC-CCccEEEEEE-cCccEEEEcceEeccccccEeC---CCcEEEEec
Confidence 3 68999999999998632110 00 0112334444 4689999999999999988752 234566677
Q ss_pred eeccC
Q 011204 256 YFSHH 260 (491)
Q Consensus 256 ~f~~h 260 (491)
++..+
T Consensus 215 yIeG~ 219 (359)
T PLN02671 215 YIQGS 219 (359)
T ss_pred EEEEe
Confidence 77644
No 66
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.49 E-value=3.7 Score=43.54 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=55.7
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
|.+.++..+.|+.-+|.... .+ |...-++||++++++.+-|--+.++...||... .-|+.-+|+
T Consensus 123 i~l~~s~d~~i~~n~i~G~~-----~~---------r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~--~~S~~~~~~ 186 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLA-----DL---------RVAERGNGIYVYNAPGALVVGNDISYGRDGIYS--DTSQHNVFK 186 (408)
T ss_pred EEEeccCceEEEeeEEeecc-----cc---------chhhccCceEEEcCCCcEEEcCccccccceEEE--cccccceec
Confidence 78889999999999998642 11 234567899999999999999999999999863 567777777
Q ss_pred cceecc
Q 011204 254 NNYFSH 259 (491)
Q Consensus 254 nn~f~~ 259 (491)
.|.|++
T Consensus 187 gnr~~~ 192 (408)
T COG3420 187 GNRFRD 192 (408)
T ss_pred ccchhh
Confidence 777775
No 67
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=93.14 E-value=2.2 Score=44.56 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=67.8
Q ss_pred EEE-eeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCce-eee-CCceEEEEeeEeecCCCCeeEee------
Q 011204 174 LTL-QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGI-SIF-GSQKIWVDHCSLSYCTDGLIDAI------ 244 (491)
Q Consensus 174 i~i-~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaI-sI~-gs~nVWIDHcS~S~~~DGliDv~------ 244 (491)
|.| ...+||-|+|.+|...-. + +....+|+. .|. ++..|=|-.|-|-+..-.++--.
T Consensus 147 Isi~~~~~nIWIDH~tf~~~s~-------------~-~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~ 212 (345)
T COG3866 147 ISIYDDGHNIWIDHNTFSGGSY-------------N-ASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNY 212 (345)
T ss_pred EEeccCCeEEEEEeeEeccccc-------------c-ccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccc
Confidence 455 567888888888876321 0 223566774 344 68888888888877554443111
Q ss_pred -eCCceEEEEcceeccCCce---eeeccCCcccCCCCeEEEEEeeEecCCCcccCccc----cCC---eEEEEcceEeCC
Q 011204 245 -MGSTGITISNNYFSHHNEV---MLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRC----RRG---YIHVVNNDFTSW 313 (491)
Q Consensus 245 -~gS~~ITISnn~f~~h~k~---mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~----R~G---~vHvvNN~y~nw 313 (491)
.+.-.||+.+|+|.+-..- +-+ -.|-+-+|+| + -.|.. +-| .+++=||||.+.
T Consensus 213 ~~~~~kvT~hhNyFkn~~qR~PriRf-----------G~vHvyNNYy-~----~~~~~g~a~~iG~~AkiyvE~NyF~~~ 276 (345)
T COG3866 213 DDGKYKVTIHHNYFKNLYQRGPRIRF-----------GMVHVYNNYY-E----GNPKFGVAITIGTSAKIYVENNYFENG 276 (345)
T ss_pred cCCceeEEEeccccccccccCCceEe-----------eEEEEecccc-c----cCcccceEEeeccceEEEEecceeccC
Confidence 1224699999999964321 111 1455667888 4 24433 233 689999999885
No 68
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=92.17 E-value=1.3 Score=43.02 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=68.5
Q ss_pred EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCc-eeee-CCceEEEEeeEeecCCCCeeE------ee
Q 011204 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDG-ISIF-GSQKIWVDHCSLSYCTDGLID------AI 244 (491)
Q Consensus 173 ~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDa-IsI~-gs~nVWIDHcS~S~~~DGliD------v~ 244 (491)
.|.+.+++||+|.+.+|.+..... .....|+ +.+. ++++|=|-+|-|......++. ..
T Consensus 77 ai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~ 142 (200)
T PF00544_consen 77 AISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNST 142 (200)
T ss_dssp SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGG
T ss_pred eEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccc
Confidence 488889999999999999862100 0111344 5665 688999999988875433321 11
Q ss_pred eCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCccccC-CeEEEEcceE
Q 011204 245 MGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRR-GYIHVVNNDF 310 (491)
Q Consensus 245 ~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R~-G~vHvvNN~y 310 (491)
.....||+-+|+|.+...-+ ...+.-++-+.+|+| .+..+..=.+|. +++-+-||||
T Consensus 143 ~~~~~vT~hhN~f~~~~~R~--------P~~r~G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 143 DRGLRVTFHHNYFANTNSRN--------PRVRFGYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GTTEEEEEES-EEEEEEE-T--------TEECSCEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred cCCceEEEEeEEECchhhCC--------CcccccEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 12269999999997643211 011223688899999 444555555553 4678888886
No 69
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=91.12 E-value=5.8 Score=43.15 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=73.1
Q ss_pred hHHHHHhc-----CCCeEEEEccCeeEEecceEEe---cCCceEEeecc---eEEEecc---------------------
Q 011204 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGA---NVEITGN--------------------- 171 (491)
Q Consensus 124 sLR~Av~~-----~~Pr~IvF~~sg~I~L~~~L~V---~SnkTI~G~Ga---~v~I~Gg--------------------- 171 (491)
|..+||.. +..+++|+=..|+ .++.|.| ++|+||.|.|. .+.|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~Gv--Y~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGT--YQGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCce--eEEEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 56677752 2335666655665 3466777 47999999763 2444321
Q ss_pred -------------------------eEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeee-CCce
Q 011204 172 -------------------------GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQK 225 (491)
Q Consensus 172 -------------------------g~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~-gs~n 225 (491)
..+.+ .+++++.+||+|++....+. .....-++-+. .+++
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDr 239 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDK 239 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCc
Confidence 01222 68999999999998642110 01122344433 4789
Q ss_pred EEEEeeEeecCCCCeeEeeeC---------CceEEEEcceeccC
Q 011204 226 IWVDHCSLSYCTDGLIDAIMG---------STGITISNNYFSHH 260 (491)
Q Consensus 226 VWIDHcS~S~~~DGliDv~~g---------S~~ITISnn~f~~h 260 (491)
+.+.+|.|....|=|+.-..+ ...--+.+|+|...
T Consensus 240 a~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 240 VQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred EEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 999999999999988752111 12455667777643
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=89.26 E-value=2 Score=46.68 Aligned_cols=105 Identities=22% Similarity=0.189 Sum_probs=48.8
Q ss_pred ceEEEEeeEeecCC--CCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcc-cCcccc-
Q 011204 224 QKIWVDHCSLSYCT--DGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQ-RMPRCR- 299 (491)
Q Consensus 224 ~nVWIDHcS~S~~~--DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~q-R~Pr~R- 299 (491)
++..|.|+-|..|. -|.|++ .|..-||++|.|.+....+-+=|. -.-++..|+|-.+-.. .-+-+|
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISv--KS~~N~ir~Ntf~es~G~ltlRHG--------n~n~V~gN~FiGng~~~~tGGIRI 268 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISV--KSSDNTIRNNTFRESQGSLTLRHG--------NRNTVEGNVFIGNGVKEGTGGIRI 268 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEE--ESBT-EEES-EEES-SSEEEEEE---------SS-EEES-EEEE-SSSS-B--EEE
T ss_pred cceeeecchhhhcCCceeEEEe--ecCCceEeccEEEeccceEEEecC--------CCceEeccEEecCCCcCCCCceEE
Confidence 56677777777664 345543 466677888888887765555443 2467888888533111 234455
Q ss_pred CCeEE-EEcceEeCCcce----------EeecC------CCceEEEeCcEEeCCCC
Q 011204 300 RGYIH-VVNNDFTSWEMY----------AIGGS------ANPTINSQGNRYTAPPD 338 (491)
Q Consensus 300 ~G~vH-vvNN~y~nw~~y----------aiggs------~~~~I~segNyF~~~~~ 338 (491)
+|.-| |+|||+++-..+ ++-.+ .-..+.+++|-|.+...
T Consensus 269 i~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 269 IGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp -SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred ecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 45545 889998865322 11111 11236678888887653
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=85.84 E-value=3.6 Score=40.17 Aligned_cols=88 Identities=24% Similarity=0.215 Sum_probs=60.0
Q ss_pred ceEEEEcceeccCC--ceeeeccCCcccCCCCeEEEEEeeEecCCCcccCccccC--C-------eEEEEcceEeCCc--
Q 011204 248 TGITISNNYFSHHN--EVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRR--G-------YIHVVNNDFTSWE-- 314 (491)
Q Consensus 248 ~~ITISnn~f~~h~--k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R~--G-------~vHvvNN~y~nw~-- 314 (491)
++|.|=||.+.+-. ..-|+|...+|..+....|.+|||.|.. ....|...+ | ..-+.||+|...-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 57888899998764 4567898878877777899999999964 556666542 3 2358999997642
Q ss_pred ----ceEee----cCCCceEEEeCcEEeCCC
Q 011204 315 ----MYAIG----GSANPTINSQGNRYTAPP 337 (491)
Q Consensus 315 ----~yaig----gs~~~~I~segNyF~~~~ 337 (491)
||..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33333 112345667788887654
No 72
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=77.55 E-value=12 Score=41.93 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=71.4
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeec----CCCCeeEeeeCCce
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY----CTDGLIDAIMGSTG 249 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~----~~DGliDv~~gS~~ 249 (491)
+.++.+.||-+++++|+... . | .+.+..++|+-|+..++.. -.||+ | ...+.+
T Consensus 241 ~~l~~c~NV~~~g~~i~ns~------------~--~-------~~h~~~~~nl~~~nl~I~~~~~~NtDG~-d-~~sc~N 297 (542)
T COG5434 241 VVLKGCRNVLLEGLNIKNSP------------L--W-------TVHPVDCDNLTFRNLTIDANRFDNTDGF-D-PGSCSN 297 (542)
T ss_pred EEEeccceEEEeeeEecCCC------------c--E-------EEeeecccCceecceEEECCCCCCCCcc-c-ccccee
Confidence 56788999999999998631 0 1 2344455566655555554 45566 5 468899
Q ss_pred EEEEcceeccCCceeeeccCCccc----CCCCeEEEEEeeEecCCCcccCcc-cc-CC---eEEEEcceEeC
Q 011204 250 ITISNNYFSHHNEVMLLGHNDKYA----LDMGMQVTIAFNHFGVALVQRMPR-CR-RG---YIHVVNNDFTS 312 (491)
Q Consensus 250 ITISnn~f~~h~k~mL~G~sds~~----~D~g~~VTihhN~F~~n~~qR~Pr-~R-~G---~vHvvNN~y~n 312 (491)
|-|.+|+|...+.+.-+=++.... .....+++|.||+|..+ +.+.-. .. .| .+-+-||++.+
T Consensus 298 vlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~ 368 (542)
T COG5434 298 VLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDN 368 (542)
T ss_pred EEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeecc
Confidence 999999999877665543332211 11126899999999643 222211 01 12 34566777765
No 73
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=73.17 E-value=19 Score=35.86 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCCCceeeeCCc-eEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCC
Q 011204 212 KSDGDGISIFGSQ-KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHN 261 (491)
Q Consensus 212 ~~dgDaIsI~gs~-nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~ 261 (491)
.-..||+++.+.. .+.|.-+.+....|-.|- ..+.-.++|++-+..++-
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~G 142 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDFG 142 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCCC
Confidence 3456888888766 788888888888887764 345566777775444443
No 74
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=72.44 E-value=43 Score=34.59 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCccccCC
Q 011204 222 GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRG 301 (491)
Q Consensus 222 gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R~G 301 (491)
+++||-|.|+.|-. =|+...+.||||-++.+..- .|-=++ .++|+.+|.. .+ -.|.|---
T Consensus 154 ~~kNvei~ns~l~s-----KDAFWn~eNVtVyDS~i~GE---YLgW~S--------kNltliNC~I-~g---~QpLCY~~ 213 (277)
T PF12541_consen 154 YCKNVEIHNSKLDS-----KDAFWNCENVTVYDSVINGE---YLGWNS--------KNLTLINCTI-EG---TQPLCYCD 213 (277)
T ss_pred ceeeEEEEccEEec-----ccccccCCceEEEcceEeee---EEEEEc--------CCeEEEEeEE-ec---cCccEeec
Confidence 45555555555421 12334567777777776532 111122 4899999998 33 56777444
Q ss_pred eEEEEcceEeC
Q 011204 302 YIHVVNNDFTS 312 (491)
Q Consensus 302 ~vHvvNN~y~n 312 (491)
.+.+.|+-+.+
T Consensus 214 ~L~l~nC~~~~ 224 (277)
T PF12541_consen 214 NLVLENCTMID 224 (277)
T ss_pred ceEEeCcEeec
Confidence 57788888764
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=70.85 E-value=7.7 Score=28.12 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=31.5
Q ss_pred ceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEEcceecc
Q 011204 217 GISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (491)
Q Consensus 217 aIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~ 259 (491)
||.+..+++..|..|.++...||.. ...+.+-+|..|.+.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 5777788888888888888888663 4667788888887764
No 76
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=65.85 E-value=11 Score=39.32 Aligned_cols=56 Identities=18% Similarity=0.379 Sum_probs=38.0
Q ss_pred EEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCee
Q 011204 175 TLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLI 241 (491)
Q Consensus 175 ~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGli 241 (491)
.+.+.+..||||++-+++.| ++.....-|.-.+.|+||+|..||..++-++.--+|
T Consensus 263 hvengkhfvirnvkaknitp-----------dfskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 263 HVENGKHFVIRNIKAKNITP-----------DFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred EecCCcEEEEEeeeccccCC-----------CchhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 35567889999999888765 122112234455778999999999988877654443
No 77
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=61.50 E-value=70 Score=32.55 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=49.8
Q ss_pred cCCceEEeecceE-EE-ecceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeC------Cce
Q 011204 154 NSYKTIDGRGANV-EI-TGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFG------SQK 225 (491)
Q Consensus 154 ~SnkTI~G~Ga~v-~I-~Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~g------s~n 225 (491)
.++.+|.|.+-.- .. .|.+ +.|..+ +..|+|-+|.++. .+||.+.+ ..+
T Consensus 96 ~~~~~i~GvtItN~n~~~g~G-i~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTG-IWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceE-EEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 5666777753211 11 2334 888555 9999999999863 23444432 345
Q ss_pred EEEEeeEeecCCCCeeEeeeCC--ceEEEEcceeccCCc
Q 011204 226 IWVDHCSLSYCTDGLIDAIMGS--TGITISNNYFSHHNE 262 (491)
Q Consensus 226 VWIDHcS~S~~~DGliDv~~gS--~~ITISnn~f~~h~k 262 (491)
+.|.-+++..+..|.. +...+ ..-+|.||+|++...
T Consensus 153 ~vI~GN~~~~~~~Gi~-i~~~~~~~~n~I~NN~I~~N~~ 190 (246)
T PF07602_consen 153 NVISGNSIYFNKTGIS-ISDNAAPVENKIENNIIENNNI 190 (246)
T ss_pred eEeecceEEecCcCeE-EEcccCCccceeeccEEEeCCc
Confidence 6677777777766653 22111 224779999886443
No 78
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=52.51 E-value=14 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=19.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhhh
Q 011204 452 ASRLPPPSPSTSIFLSLLIILILYT 476 (491)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~l~~ 476 (491)
.+..|-.+--||++|.||+|+||-.
T Consensus 7 pN~q~VELNRTSLy~GlLlifvl~v 31 (39)
T PRK00753 7 PNKQPVELNRTSLYLGLLLVFVLGI 31 (39)
T ss_pred CCCCCceechhhHHHHHHHHHHHHH
Confidence 3345566778999999999999865
No 79
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=51.38 E-value=2.2e+02 Score=28.14 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred eCCceEEEEeeEeecCC-CCeeE-----eeeCCceEEEEcceeccCCceeee--ccCCcc-cCCCCeEEEEEeeEecCCC
Q 011204 221 FGSQKIWVDHCSLSYCT-DGLID-----AIMGSTGITISNNYFSHHNEVMLL--GHNDKY-ALDMGMQVTIAFNHFGVAL 291 (491)
Q Consensus 221 ~gs~nVWIDHcS~S~~~-DGliD-----v~~gS~~ITISnn~f~~h~k~mL~--G~sds~-~~D~g~~VTihhN~F~~n~ 291 (491)
+.+++|+|.|+.|..+. ...++ +..|-.+.-|-||.|..-.++-+. --.... ....+...++.+|.+ -|+
T Consensus 31 ~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT 109 (198)
T PF08480_consen 31 DSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNT 109 (198)
T ss_pred cccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eee
Confidence 35689999999999863 22222 235666889999999965442221 111111 122345677788888 567
Q ss_pred ccc
Q 011204 292 VQR 294 (491)
Q Consensus 292 ~qR 294 (491)
.+|
T Consensus 110 ~~r 112 (198)
T PF08480_consen 110 RKR 112 (198)
T ss_pred eec
Confidence 766
No 80
>CHL00038 psbL photosystem II protein L
Probab=38.88 E-value=35 Score=25.06 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.5
Q ss_pred CCCCCCCchHHHHHHHHHHhhhh
Q 011204 454 RLPPPSPSTSIFLSLLIILILYT 476 (491)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~l~~ 476 (491)
..+-.+--||++|.||+|+||-.
T Consensus 8 ~q~VELNRTSLy~GLLlifvl~v 30 (38)
T CHL00038 8 KQNVELNRTSLYWGLLLIFVLAV 30 (38)
T ss_pred CCccchhhhhHHHHHHHHHHHHH
Confidence 35556677999999999999865
No 81
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=37.26 E-value=1.7e+02 Score=30.38 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=11.3
Q ss_pred eeccEEEEeeEEEee
Q 011204 178 YVSHVIIHNVHIHHC 192 (491)
Q Consensus 178 ~a~NVIIrnL~Ir~~ 192 (491)
+++|..|.|.+|.++
T Consensus 17 ~~~d~~l~~~~f~dG 31 (277)
T PF12541_consen 17 GSHDLRLENCTFADG 31 (277)
T ss_pred ccCCCEEEeeEEeCC
Confidence 567888888888764
No 82
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=33.83 E-value=1.3e+02 Score=33.54 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=40.3
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecCCCCeeEeeeCCceEEEE
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~~DGliDv~~gS~~ITIS 253 (491)
+.+ .+++++.+||+|++..... ....-|+.+ .++++-+.+|.|....|=|.+- +..--+.
T Consensus 265 ~~v-~~~~F~a~nitf~Ntag~~---------------~~QAvAl~v-~~D~~~fy~c~~~G~QDTLy~~---~~rqyy~ 324 (497)
T PLN02698 265 FTI-TGDGFIARDIGFKNAAGPK---------------GEQAIALSI-TSDHSVLYRCSIAGYQDTLYAA---ALRQFYR 324 (497)
T ss_pred EEE-ECCCeEEEeeEEEECCCCC---------------CCceEEEEe-cCCcEEEEcceeecccchheeC---CCcEEEE
Confidence 444 7899999999999853100 112223333 4788899999998877766542 1223444
Q ss_pred cceec
Q 011204 254 NNYFS 258 (491)
Q Consensus 254 nn~f~ 258 (491)
+|++.
T Consensus 325 ~C~I~ 329 (497)
T PLN02698 325 ECDIY 329 (497)
T ss_pred eeEEE
Confidence 55554
No 83
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=28.53 E-value=43 Score=24.56 Aligned_cols=21 Identities=33% Similarity=0.573 Sum_probs=15.0
Q ss_pred CCCCCchHHHHHHHHHHhhhh
Q 011204 456 PPPSPSTSIFLSLLIILILYT 476 (491)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~l~~ 476 (491)
+-.+.-||++|.||+|+||-.
T Consensus 9 ~VELNRTSLY~GLllifvl~v 29 (37)
T PF02419_consen 9 PVELNRTSLYWGLLLIFVLAV 29 (37)
T ss_dssp -BE--CCHHHHHHHHHHHHHH
T ss_pred ccchhHHhHHHHHHHHHHHHH
Confidence 345567899999999999864
No 84
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=21.83 E-value=2e+02 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=30.0
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceeeeCCceEEEEeeEeecC
Q 011204 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC 236 (491)
Q Consensus 174 i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcS~S~~ 236 (491)
|.+..+++..|++=+|.+. .|||.+..+++--|..+.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~----------------------~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNN----------------------SYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EEEEecCCCEEECcEEeCC----------------------CCEEEEEeCCCCEeECCEEEcC
Confidence 5566666666777777652 3689999988888888887653
No 85
>COG4371 Predicted membrane protein [Function unknown]
Probab=21.18 E-value=1.4e+02 Score=30.87 Aligned_cols=14 Identities=50% Similarity=0.831 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCCC
Q 011204 423 GFSGGGSGSGGTNR 436 (491)
Q Consensus 423 ~~~~~g~~~~~~~~ 436 (491)
|.++||-+.|++++
T Consensus 72 gpsGGgY~gg~Y~G 85 (334)
T COG4371 72 GPSGGGYSGGGYSG 85 (334)
T ss_pred CCCCCCCCCCCCCC
Confidence 44444444333333
Done!