BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011205
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 172/469 (36%), Positives = 246/469 (52%), Gaps = 36/469 (7%)
Query: 2 VQIENEFGSY-GDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAV 60
VQ+ENE+GSY D +YL L R HLG D++L+TTDG + L G ++G ++ V
Sbjct: 160 VQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQG--LYTTV 217
Query: 61 DFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILS 120
DF TG+ F Q++ K P ++SEFYTGWL HWG+ + + AS L IL+
Sbjct: 218 DFGTGSNITDAFLSQRKCEP--KGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILA 275
Query: 121 QNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRR 180
+ S LYM GGTNF ++NGAN S Y TSYDYDAP+ E+GD+ K+ A+R
Sbjct: 276 RGASVNLYMFIGGTNFAYWNGAN-----SPYAAQPTSYDYDAPLSEAGDLTE-KYFALRN 329
Query: 181 VVEKFSPASLPSVLPDNEKAGFGPIQLQKTAXXXXXXXXXXXXXXXESENPLSMESVGQM 240
+++KF + P K +G + L+K +S PL+ V Q
Sbjct: 330 IIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQH 389
Query: 241 FGFLLYVSEFGGKDYGSSLL---ISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRAL 297
+GF+LY + + L ++ VHDRA V + G P G +ER N +
Sbjct: 390 YGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAV-------DGIPQ--GVLER--NNVI 438
Query: 298 SLPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILSSVYLGGKVLRGWKMIPVPFHNLN 357
+L N + +L +LVENMGRVNYG Y+ D KG++S++ L +L W + P L+
Sbjct: 439 TL-NITGKAGATLDLLVENMGRVNYGAYINDFKGLVSNLTLSSNILTDWTIFP-----LD 492
Query: 358 EVPKISPILEVAYSGLIKASARKKLEHNAGNITKEPAFYVGRFSIDK--VNQVKDTYLSF 415
+ L + + HN+ N T PAFY+G FSI + +DT++ F
Sbjct: 493 TEDAVRSHLG-GWGHRDSGHHDEAWAHNSSNYTL-PAFYMGNFSIPSGIPDLPQDTFIQF 550
Query: 416 SGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-RHGENLVVIFELE 463
GW KG ++N FNLGR+WP+ GPQ L+VP IL N + + ELE
Sbjct: 551 PGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELE 599
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 165/484 (34%), Positives = 232/484 (47%), Gaps = 55/484 (11%)
Query: 1 MVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAV 60
M+Q+ENE+GSYG+DK YL + L G L+T+DG R TL GT+ + +F
Sbjct: 150 MMQVENEYGSYGEDKAYLRAIRQLME-ECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTG 208
Query: 61 DFSTGAEPWPIFKLQKQFNAPGKSPPLSS-EFYTGWLTHWGEKIAKTDADFTASYLEKIL 119
+F + A P+ ++Q+ F+ GK PL EF+ GW W E I D A + ++L
Sbjct: 209 NFGSKA-PYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVL 267
Query: 120 SQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNP--KFKA 177
Q GS LYM HGGTNFGF NG + T P +TSYDYDA + E G NP K+ A
Sbjct: 268 EQ-GSINLYMFHGGTNFGFMNGCSARGTLD--LPQVTSYDYDALLDEEG---NPTAKYLA 321
Query: 178 IRRVVEKFSPASLPSVLP-DNEKAGFGPIQLQKTAXXXXXXXXXXXXXXXESENPLSMES 236
+++++ + P + P E I L + ES P ME
Sbjct: 322 VKKMMATHF-SEYPQLEPLYKESMELDAIPLVEKV--SLFETLDSLSSPVESLYPQKMEE 378
Query: 237 VGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRA 296
+GQ +G+LLY +E L I DRAQ+++ + T +G + +
Sbjct: 379 LGQSYGYLLYRTETNWDAEEERLRIIDGRDRAQLYVDGQWVKTQYQ-TEIGEDIFYQGKK 437
Query: 297 LSLPNFRCGSNISLFVLVENMGRVNYG-PYMFD--EKGILSSVYLGGKVLRGWKMIPVPF 353
L L +L+ENMGRVNYG ++ D KGI + V L WK P+P
Sbjct: 438 KGLSR--------LDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLHFLLNWKHYPLPL 489
Query: 354 HNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNITKEPAFYVGRFSIDKVNQVKDTYL 413
N +K++ + G +PAFY F+++ + KDTYL
Sbjct: 490 DN-----------------------PEKIDFSKGWTQGQPAFYAYDFTVE---EPKDTYL 523
Query: 414 SFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGENLVVIFELESPNSELVIHS 473
S +GKG+AFVN NLGRFW + GP LY+P L+ G N ++IFE E E IH
Sbjct: 524 DLSEFGKGVAFVNGQNLGRFW-NVGPTLSLYIPHSYLKEGANRIIIFETEGQYKE-EIHL 581
Query: 474 VNQP 477
+P
Sbjct: 582 TRKP 585
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 149/483 (30%), Positives = 227/483 (46%), Gaps = 59/483 (12%)
Query: 2 VQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVD 61
VQ+ENE+G++G DK Y+ + + + L+ D + + D + ++
Sbjct: 157 VQVENEYGAFGIDKPYISEIRDXVKQAGFTGVPLFQCDWNS--NFENNAL--DDLLWTIN 212
Query: 62 FSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQ 121
F TGA FK K+ +P SEF++GW HWG K A+ ++ L +
Sbjct: 213 FGTGANIDEQFKRLKELRP--DTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDR 270
Query: 122 NGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRV 181
N S LY HGGT+FG + GAN N + P TSYDYDAPI ESG V PK+ +R +
Sbjct: 271 NISFSLYXTHGGTSFGHWGGANFPN----FSPTCTSYDYDAPINESGKV-TPKYLEVRNL 325
Query: 182 VEKFSP--ASLPSVLPDNEKAGFGPIQLQKTAXXXXXXXXXXXXXXXESENPLSMESVGQ 239
+ + P +LP + PD+ I + ESE+ + E+ Q
Sbjct: 326 LGNYLPEGETLPEI-PDS----IPTIAIPTIKXTEXAVLFDNLPHPKESEDIRTXEAFDQ 380
Query: 240 MFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRA-LS 298
+G +LY + D +LLI++ HD AQVF++ + T+ R +
Sbjct: 381 GWGSILYRTSLSASDKEQTLLITEAHDWAQVFLNGKK---------LATLSRLKGEGVVK 431
Query: 299 LPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILSSVYL----GGKVLRGWKMIPVPFH 354
LP + G + +LVE GR N+G ++D KGI V L G ++++ W++ +P
Sbjct: 432 LPPLKEGDRLD--ILVEAXGRXNFGKGIYDWKGITEKVELQSDKGVELVKDWQVYTIP-- 487
Query: 355 NLNEVPKISPILEVAYSGLIKASARKKLEHNAGNITKEPAFYVGRFSIDKVNQVKDTYLS 414
V YS AR K N +PA+Y F++ N++ DT+L+
Sbjct: 488 -------------VDYS-----FARDKQYKQQENAENQPAYYRSTFNL---NELGDTFLN 526
Query: 415 FSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGENLVVIFELESPNSELVIHSV 474
W KG +VN +GR+W GPQ LYVP L+ GEN ++I + P S+ +
Sbjct: 527 XXNWSKGXVWVNGHAIGRYW-EIGPQQTLYVPGCWLKKGENEIIILDXAGP-SKAETEGL 584
Query: 475 NQP 477
QP
Sbjct: 585 RQP 587
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 14 DKEYLHHLVTLARAH-----LGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEP 68
D +HHLV +A AH LG D T GTR ++ G + +A F D S
Sbjct: 138 DHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHR 197
Query: 69 WPIFKLQKQ--FNAPGKSPPLSSEFYTGWLTHWGEKI 103
+ K Q P K+ +S + GE+
Sbjct: 198 EFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEEC 234
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 115 LEKILSQNGSAV------LYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESG 168
E++ +N A +YM GGTN+G N G+ TSYDY A I+E
Sbjct: 303 FERVFYKNNMAAGVTIFNIYMTFGGTNWG-----NLGHPGG-----YTSYDYGASIREDR 352
Query: 169 DVDNPKFKAIRRVVE--KFSPASLPSVLPDNEKAG 201
+D K+ ++ + K SP + + P+N G
Sbjct: 353 RIDREKYSELKLQGQFLKVSPGYI-TATPENATQG 386
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 394 AFYVGRFSIDKVNQVKDTYLSF-------SGWGKGIAFVNEFNLGRFWPSFGPQCDLYVP 446
AFY + + Q D LSF + + + +VN F G++ + GPQ + VP
Sbjct: 885 AFYAAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYVSNIGPQTEFPVP 944
Query: 447 APILRH-GENL--VVIFELESPNSEL 469
IL + G+N V ++ LES +++
Sbjct: 945 EGILDYNGDNWIGVALWALESRGAKV 970
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 69 WPIFKLQKQFNAPGK----SPPLS-SEFYTGWLTHWGEKIAKTDADFTASYLEKILSQN- 122
WP L F+ + S P S EF G WG A E++ +N
Sbjct: 233 WPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKND 292
Query: 123 ---GSAVL--YMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKA 177
G A L YM GGTN+G N G+ TSYDY + I ES ++ K+
Sbjct: 293 FSFGVAFLNLYMIFGGTNWG-----NLGHPGG-----YTSYDYGSAISESRNITREKYSE 342
Query: 178 IRRV--VEKFSPASL 190
++ + K SP L
Sbjct: 343 LKLLGNFAKVSPGYL 357
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 100 GEKIAKTDADFTASYLEKILSQNGSAVLYMAHG---GTNFGF 138
G ++ K + DF A Y E+++++ GS + HG NF F
Sbjct: 53 GIRVVKGNXDFYAGYPERLVTELGSTKIIQTHGHLFDINFNF 94
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 73 KLQKQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLE 116
KLQK+F S GW+ E+ K++ DFT LE
Sbjct: 739 KLQKRFGRSNLSAGRVQSTVLGWIVEREEEYKKSEKDFTLLVLE 782
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 101 EKIAKTDADFTA------SYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNT 147
E IA DAD TA SYL+ + G +L+ HG T+ G G G T
Sbjct: 4 ETIAIVDADATAETRSLLSYLDGV---RGEGILFGHHGTTSSGLTTGPTDGTT 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,788,832
Number of Sequences: 62578
Number of extensions: 707667
Number of successful extensions: 1464
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 16
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)