Query 011205
Match_columns 491
No_of_seqs 186 out of 1067
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 22:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 3.7E-99 8E-104 828.5 38.5 432 1-483 180-734 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 5.6E-82 1.2E-86 668.9 36.3 443 1-482 168-644 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 3.6E-45 7.9E-50 373.1 9.1 176 1-185 143-319 (319)
4 COG1874 LacA Beta-galactosidas 99.4 4.1E-14 8.9E-19 155.3 -1.1 408 1-464 154-592 (673)
5 PF13364 BetaGal_dom4_5: Beta- 99.3 2.1E-12 4.5E-17 112.5 7.9 72 389-464 32-109 (111)
6 PF13364 BetaGal_dom4_5: Beta- 98.2 1E-05 2.2E-10 70.6 10.2 79 232-319 25-110 (111)
7 PF02837 Glyco_hydro_2_N: Glyc 97.7 0.00022 4.8E-09 65.7 9.1 94 237-339 63-164 (167)
8 PF02837 Glyco_hydro_2_N: Glyc 97.1 0.0016 3.5E-08 60.0 8.0 70 390-461 66-137 (167)
9 PRK10150 beta-D-glucuronidase; 94.5 0.17 3.8E-06 56.5 9.8 92 239-339 62-177 (604)
10 PRK10340 ebgA cryptic beta-D-g 94.4 0.1 2.2E-06 61.8 7.9 66 391-460 108-176 (1021)
11 PRK09525 lacZ beta-D-galactosi 93.8 0.098 2.1E-06 62.0 6.1 67 391-461 119-189 (1027)
12 KOG0496 Beta-galactosidase [Ca 93.6 0.026 5.6E-07 62.2 0.9 31 154-186 300-330 (649)
13 PRK10150 beta-D-glucuronidase; 93.0 0.31 6.7E-06 54.6 8.3 67 391-459 64-132 (604)
14 PRK10340 ebgA cryptic beta-D-g 92.6 0.43 9.3E-06 56.7 9.1 89 241-341 108-206 (1021)
15 PRK09525 lacZ beta-D-galactosi 90.9 0.99 2.1E-05 53.7 9.5 87 241-339 119-216 (1027)
16 PF02449 Glyco_hydro_42: Beta- 88.7 0.98 2.1E-05 47.4 6.6 145 15-185 212-371 (374)
17 PF08531 Bac_rhamnosid_N: Alph 75.0 4.2 9.2E-05 38.0 4.4 51 410-460 5-62 (172)
18 PLN03059 beta-galactosidase; P 64.4 28 0.00062 40.5 8.8 71 390-462 468-545 (840)
19 PF14683 CBM-like: Polysacchar 58.3 9.6 0.00021 35.6 3.1 47 417-464 91-153 (167)
20 KOG2024 Beta-Glucuronidase GUS 57.6 15 0.00033 36.8 4.5 38 238-275 84-128 (297)
21 PF06832 BiPBP_C: Penicillin-B 42.5 73 0.0016 26.0 5.7 67 240-320 17-84 (89)
22 smart00633 Glyco_10 Glycosyl h 40.6 1.2E+02 0.0027 29.8 8.0 134 14-177 101-253 (254)
23 PF08308 PEGA: PEGA domain; I 24.0 1.1E+02 0.0024 23.6 3.6 22 258-288 3-24 (71)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.7e-99 Score=828.50 Aligned_cols=432 Identities=25% Similarity=0.382 Sum_probs=335.6
Q ss_pred CccccccCCCC-----CCCHHHHHHHHHHHHhhcCCceEEEeccCCccccccCCCcCCCeeeeecCCCCCCCCchhHHhH
Q 011205 1 MVQIENEFGSY-----GDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQ 75 (491)
Q Consensus 1 mvQvENEYg~y-----~~d~~Ym~~L~~~~~~~~Gi~vpl~t~dg~~~~~~~~G~~~~~~v~~~~~f~~~~~~~~~f~~~ 75 (491)
|+|||||||+| ++|++||+||++++++ .|++|||||||+.. .+++ ++.|+|- ...+.|..
T Consensus 180 mvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~-~Gi~VPl~t~dg~~-------~~~~--v~~t~Ng----~~~~~f~~- 244 (840)
T PLN03059 180 LSQIENEYGPVEWEIGAPGKAYTKWAADMAVK-LGTGVPWVMCKQED-------APDP--VIDTCNG----FYCENFKP- 244 (840)
T ss_pred EEEecccccceecccCcchHHHHHHHHHHHHH-cCCCcceEECCCCC-------CCcc--ceecCCC----chhhhccc-
Confidence 79999999998 6899999999999999 89999999999752 2333 7777772 12223332
Q ss_pred HHhcCCCCCCCcccccccccccccCCCCcCCCHHHHHHHHHHHHHcCCe-eeEEEeecccCCCCcCCCCCCCCCCCCCCc
Q 011205 76 KQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNGS-AVLYMAHGGTNFGFYNGANTGNTESDYQPD 154 (491)
Q Consensus 76 ~~~~~~~~~P~~~~E~~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g~s-~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~ 154 (491)
..+.+|+|+||||+|||++||++++.+++++++..+++||++|+| +|||||||||||||||||+ + +
T Consensus 245 ----~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~-------~--~ 311 (840)
T PLN03059 245 ----NKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGP-------F--I 311 (840)
T ss_pred ----CCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCC-------c--c
Confidence 122479999999999999999999999999999999999999999 7999999999999999987 3 7
Q ss_pred ccccCCCCccCCCCCCChHHHHHHHHHHHhh--CCCCCCCCCC-CC-----------C--------ccccc---ceeee-
Q 011205 155 LTSYDYDAPIKESGDVDNPKFKAIRRVVEKF--SPASLPSVLP-DN-----------E--------KAGFG---PIQLQ- 208 (491)
Q Consensus 155 ~TSYDY~Api~E~G~~t~pKy~~lr~~i~~~--~~~~l~~~p~-~~-----------~--------~~~y~---~v~~~- 208 (491)
+|||||||||+|+|++|+|||.+||++++.+ .+..++..++ .. + ++.|+ .++++
T Consensus 312 ~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f 391 (840)
T PLN03059 312 ATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTF 391 (840)
T ss_pred ccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEE
Confidence 9999999999999999988999999999887 2222322222 11 2 34455 45544
Q ss_pred -----------------ceeeccccccc------c--CCC----------Cccc---cCCCcccccc-------CCccce
Q 011205 209 -----------------KTALLFDLLDV------L--DPA----------DVVE---SENPLSMESV-------GQMFGF 243 (491)
Q Consensus 209 -----------------~~~~L~~~l~~------~--~~~----------~~~~---s~~p~~~E~l-------gq~~Gy 243 (491)
...+||+++.+ + .+. +++. ++.|++||+| +|.+||
T Consensus 392 ~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dY 471 (840)
T PLN03059 392 GNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDY 471 (840)
T ss_pred CCcccccCccceeecccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCce
Confidence 23445555543 1 110 0002 2348999999 999999
Q ss_pred EEEEEeeCCCCCC--------ceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEccc-cceeEec--ccccCCCcEEEE
Q 011205 244 LLYVSEFGGKDYG--------SSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLP--NFRCGSNISLFV 312 (491)
Q Consensus 244 vlYrt~~~~~~~~--------~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~~-~~~~~lp--~~~~~~~~~L~I 312 (491)
+||||+|...... .+|+|.+++|+++|||| |+++|++.+.. +..+.++ +....+.++|+|
T Consensus 472 lwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVN---------g~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~i 542 (840)
T PLN03059 472 LWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFIN---------GQLAGTVYGELSNPKLTFSQNVKLTVGINKISL 542 (840)
T ss_pred EEEEEEEeecCCccccccCCCceEEEcccCcEEEEEEC---------CEEEEEEEeecCCcceEEecccccCCCceEEEE
Confidence 9999999765322 35999999999999999 99999998754 3345554 223346789999
Q ss_pred EEEeCCccccCcCccC-CccceeeEEECC-----EEecCeE-EEeecCCCCCCCCCcccccccccccchhhhhhhhcccc
Q 011205 313 LVENMGRVNYGPYMFD-EKGILSSVYLGG-----KVLRGWK-MIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHN 385 (491)
Q Consensus 313 LvEn~Gr~NyG~~~~~-~KGI~g~V~l~g-----~~l~~W~-~~~l~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 385 (491)
|||||||+|||++|+. +|||+|+|+|+| +.|++|+ +|+++|+++. .+++...+..+..|.+. +
T Consensus 543 Lse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~--~~i~~~~~~~~~~W~~~--------~ 612 (840)
T PLN03059 543 LSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEA--LSLHTITGSSSVEWVEG--------S 612 (840)
T ss_pred EEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCcccee--ccccccCCCCCcccccc--------c
Confidence 9999999999999975 999999999988 7899999 8999998653 22333322223445321 1
Q ss_pred CCCCCCCceEEEEEEeeCCCCCccceEEEeCCCceEEEEECCeeceeccCCC--------------------------CC
Q 011205 386 AGNITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSF--------------------------GP 439 (491)
Q Consensus 386 ~~~~~~~p~~y~~~f~i~~~~~~~Dt~Ld~~g~~KG~v~VNG~nlGRYW~~~--------------------------GP 439 (491)
......+|+|||++|++|.+. ++|||||++||||+|||||+||||||+ + ||
T Consensus 613 ~~~~~~p~twYK~~Fd~p~g~--Dpv~LDm~gmGKG~aWVNG~nIGRYW~-~~a~~~gC~~c~y~g~~~~~kc~~~cggP 689 (840)
T PLN03059 613 LLAQKQPLTWYKTTFDAPGGN--DPLALDMSSMGKGQIWINGQSIGRHWP-AYTAHGSCNGCNYAGTFDDKKCRTNCGEP 689 (840)
T ss_pred cccCCCCceEEEEEEeCCCCC--CCEEEecccCCCeeEEECCcccccccc-cccccCCCccccccccccchhhhccCCCc
Confidence 123334699999999998764 249999999999999999999999995 5 99
Q ss_pred eeeEe-cCCccccccCcEEEEEEecCCCCcceEEE-eecccccccc
Q 011205 440 QCDLY-VPAPILRHGENLVVIFELESPNSELVIHS-VNQPDFTCGS 483 (491)
Q Consensus 440 Q~tlY-VP~~~Lk~G~N~ivvfE~~~~~~~~~~~~-~~~~~~~~~~ 483 (491)
||+|| ||++|||+|+|+|||||++++++. .|.+ +....-.|+.
T Consensus 690 ~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~-~I~~~~~~~~~~c~~ 734 (840)
T PLN03059 690 SQRWYHVPRSWLKPSGNLLIVFEEWGGNPA-GISLVKRTTDSVCAD 734 (840)
T ss_pred eeEEEeCcHHHhccCCceEEEEEecCCCCC-ceEEEEeecCccccc
Confidence 99999 999999999999999999998887 4554 4445566654
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-82 Score=668.87 Aligned_cols=443 Identities=31% Similarity=0.458 Sum_probs=344.9
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHhhcCCceEEEeccCC-ccccccCCCcCCCeeeeecCCCCCCCCchhHHhHHHhc
Q 011205 1 MVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGG-TRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFN 79 (491)
Q Consensus 1 mvQvENEYg~y~~d~~Ym~~L~~~~~~~~Gi~vpl~t~dg~-~~~~~~~G~~~~~~v~~~~~f~~~~~~~~~f~~~~~~~ 79 (491)
|+||||||| .|..++++..+++.+-++.|+++++. .++.||++. +..|.. +|.+.+...+ +..++..
T Consensus 168 l~QIENEYG------~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~-dapd~~--in~cng~~c~--~~f~~pn- 235 (649)
T KOG0496|consen 168 LVQIENEYG------NYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQD-DAPDPG--INTCNGFYCG--DTFKRPN- 235 (649)
T ss_pred EEEeechhh------HHHHHHHHHHHHhhccceEEEEecCCCCceeEecCC-CCCCcc--ccccCCccch--hhhccCC-
Confidence 789999999 78899999999999999999998875 445666654 322222 2221111111 2222232
Q ss_pred CCCCCCCcccccccccccccCCCCcCCCHHHHHHHHHHHHHcCC-eeeEEEeecccCCCCcCC---CCCCC---------
Q 011205 80 APGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNG-SAVLYMAHGGTNFGFYNG---ANTGN--------- 146 (491)
Q Consensus 80 ~~~~~P~~~~E~~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g~-s~n~YM~hGGTNfG~~~G---a~~~~--------- 146 (491)
.+++|+|+||+|+|||++||++++.|++++++..+.+++++|+ ++||||||||||||++|| |+...
T Consensus 236 -~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~dgl~ 314 (649)
T KOG0496|consen 236 -SPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLDGLL 314 (649)
T ss_pred -CCCCCceecccccchhhhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccchhh
Confidence 3578999999999999999999999999999999999999995 599999999999999999 65311
Q ss_pred ---CCCCCCCcccccCCCCccCCCCCCChHHHHHHH----HHHHhhCCCCCCCCCCCCCcccccceeeeceeeccccccc
Q 011205 147 ---TESDYQPDLTSYDYDAPIKESGDVDNPKFKAIR----RVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDV 219 (491)
Q Consensus 147 ---~~~~~~p~~TSYDY~Api~E~G~~t~pKy~~lr----~~i~~~~~~~l~~~p~~~~~~~y~~v~~~~~~~L~~~l~~ 219 (491)
+.+.+.+..|||||+||+.|+|+++-+||.++| +.|+.+.+.+.+.+|.+.++..|+++++. .|.||.+.
T Consensus 315 ~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~sls---ilpdck~~ 391 (649)
T KOG0496|consen 315 RQPKYGHLKPLHTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLS---ILPDCKTV 391 (649)
T ss_pred cCCCccccccchhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEE---echhhcch
Confidence 113467899999999999999996557999999 88888888888888888888999998875 56666655
Q ss_pred c-CCCC----ccccCCCccccccCCccceEEEEEeeCCCC-CCceeEec-CcCcEEEEEEcCCCCCCCCCCeEEEEEEcc
Q 011205 220 L-DPAD----VVESENPLSMESVGQMFGFLLYVSEFGGKD-YGSSLLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIERW 292 (491)
Q Consensus 220 ~-~~~~----~~~s~~p~~~E~lgq~~GyvlYrt~~~~~~-~~~~L~i~-~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~ 292 (491)
+ ++++ +..+..|+++|..+|.+|+++|++.++.+. +...|+|. +++|++||||| |+++|++.+.
T Consensus 392 ~~nta~~~~~~~~~~e~~~~~~~~~~~~~ll~~~~~t~d~sd~t~~~i~ls~g~~~hVfvN---------g~~~G~~~g~ 462 (649)
T KOG0496|consen 392 VYNTAKVMAQWISFTEPIPSEAVGQSFGGLLEQTNLTKDKSDTTSLKIPLSLGHALHVFVN---------GEFAGSLHGN 462 (649)
T ss_pred hhhccccccccccccCCCccccccCcceEEEEEEeeccccCCCceEeecccccceEEEEEC---------CEEeeeEecc
Confidence 4 3222 346788999999999999999999887653 34568888 99999999999 9999999875
Q ss_pred c-ccee--EecccccCCCcEEEEEEEeCCccccCcCccCCccceeeEEECCEEecCeEEEee--cCCCCCCCCCcccccc
Q 011205 293 S-NRAL--SLPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILSSVYLGGKVLRGWKMIPV--PFHNLNEVPKISPILE 367 (491)
Q Consensus 293 ~-~~~~--~lp~~~~~~~~~L~ILvEn~Gr~NyG~~~~~~KGI~g~V~l~g~~l~~W~~~~l--~l~~~~~~~~~~~~~~ 367 (491)
. +..+ .-+.....+.|+|+|||||+||+|||.+..+.|||+|+|+|+|.-+..|+..++ +|.+ +...++.++.
T Consensus 463 ~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G~~e~~~~Gi~g~v~l~g~~~l~~~~w~~~~gl~g--e~~~~~~~~~ 540 (649)
T KOG0496|consen 463 NEKIKLNLSQPVGLKAGENKLALLSENVGLPNYGHFENDFKGILGPVYLNGLIDLTWTKWPYKVGLKG--EKLGLHTEEG 540 (649)
T ss_pred ccceeEEeecccccccCcceEEEEEEecCCCCcCcccccccccccceEEeeeeccceeecceeccccc--chhhcccccc
Confidence 3 2233 334333457899999999999999994445699999999999996666655444 4443 2233444444
Q ss_pred cccccchhhhhhhhccccCCCCCCCceEEEEEEeeCCCCCccceEEEeCCCceEEEEECCeeceeccCCCCCeeeEecCC
Q 011205 368 VAYSGLIKASARKKLEHNAGNITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPA 447 (491)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~~~~~p~~y~~~f~i~~~~~~~Dt~Ld~~g~~KG~v~VNG~nlGRYW~~~GPQ~tlYVP~ 447 (491)
.....|.+. ...+...+.+||+ +|++|++. .||||||.|||||+|||||+|||||||++|||++||||+
T Consensus 541 ~~~v~w~~~--------~~~~~k~P~~w~k-~f~~p~g~--~~t~Ldm~g~GKG~vwVNG~niGRYW~~~G~Q~~yhvPr 609 (649)
T KOG0496|consen 541 SSKVKWKKL--------SNTATKQPLTWYK-TFDIPSGS--EPTALDMNGWGKGQVWVNGQNIGRYWPSFGPQRTYHVPR 609 (649)
T ss_pred ccccceeec--------cCcccCCCeEEEE-EecCCCCC--CCeEEecCCCcceEEEECCcccccccCCCCCceEEECcH
Confidence 334455332 1222235668888 99999875 699999999999999999999999999999999999999
Q ss_pred ccccccCcEEEEEEecCCCCcceEEEeecccc-ccc
Q 011205 448 PILRHGENLVVIFELESPNSELVIHSVNQPDF-TCG 482 (491)
Q Consensus 448 ~~Lk~G~N~ivvfE~~~~~~~~~~~~~~~~~~-~~~ 482 (491)
+|||++.|.||||||++++|. .+.|++.+.. .|+
T Consensus 610 ~~Lk~~~N~lvvfEee~~~p~-~i~~~~~~~~~~~~ 644 (649)
T KOG0496|consen 610 SWLKPSGNLLVVFEEEGGDPN-GISFVTRPVLSTCA 644 (649)
T ss_pred HHhCcCCceEEEEEeccCCCc-cceEEEeEeeeEee
Confidence 999999999999999997765 6888777765 443
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=3.6e-45 Score=373.07 Aligned_cols=176 Identities=44% Similarity=0.801 Sum_probs=133.7
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHhhcCCc-eEEEeccCCccccccCCCcCCCeeeeecCCCCCCCCchhHHhHHHhc
Q 011205 1 MVQIENEFGSYGDDKEYLHHLVTLARAHLGKD-IILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFN 79 (491)
Q Consensus 1 mvQvENEYg~y~~d~~Ym~~L~~~~~~~~Gi~-vpl~t~dg~~~~~~~~G~~~~~~v~~~~~f~~~~~~~~~f~~~~~~~ 79 (491)
|+|||||||++++|++||++|++++++ .|++ ++++|+|++......++.+++.+++++++|++++++...|..++.++
T Consensus 143 ~vQvENEyg~~~~~~~Y~~~l~~~~~~-~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
T PF01301_consen 143 MVQVENEYGSYGTDRAYMEALKDAYRD-WGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQ 221 (319)
T ss_dssp EEEESSSGGCTSS-HHHHHHHHHHHHH-TT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHH
T ss_pred hhhhhhhhCCCcccHhHHHHHHHHHHH-hhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcC
Confidence 799999999999999999999999999 6887 88999998765556677777766999999998765556677777763
Q ss_pred CCCCCCCcccccccccccccCCCCcCCCHHHHHHHHHHHHHcCCeeeEEEeecccCCCCcCCCCCCCCCCCCCCcccccC
Q 011205 80 APGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYD 159 (491)
Q Consensus 80 ~~~~~P~~~~E~~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g~s~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYD 159 (491)
+++|+|++|||+|||++||++++.+++++++..+++++++|+++||||||||||||+++|++.. . +|++||||
T Consensus 222 --p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~----~-~p~~TSYD 294 (319)
T PF01301_consen 222 --PNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYY----G-QPDITSYD 294 (319)
T ss_dssp --TTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETT----T-EEB-SB--
T ss_pred --CCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCC----C-CCCcccCC
Confidence 4789999999999999999999999999999999999999999999999999999999998842 1 68999999
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHhh
Q 011205 160 YDAPIKESGDVDNPKFKAIRRVVEKF 185 (491)
Q Consensus 160 Y~Api~E~G~~t~pKy~~lr~~i~~~ 185 (491)
|+|||+|+|++| |||+++|+++++|
T Consensus 295 Y~ApI~E~G~~~-~Ky~~lr~l~~~~ 319 (319)
T PF01301_consen 295 YDAPIDEYGQLT-PKYYELRRLHQKY 319 (319)
T ss_dssp TT-SB-TTS-B--HHHHHHHHHHHT-
T ss_pred cCCccCcCCCcC-HHHHHHHHHHhcC
Confidence 999999999999 5999999999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.1e-14 Score=155.32 Aligned_cols=408 Identities=16% Similarity=0.087 Sum_probs=220.6
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHhhcCCceEEEeccCCccccccCCCcCCCeeeeecC-CCCCCCCchhH-HhHHHh
Q 011205 1 MVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVD-FSTGAEPWPIF-KLQKQF 78 (491)
Q Consensus 1 mvQvENEYg~y~~d~~Ym~~L~~~~~~~~Gi~vpl~t~dg~~~~~~~~G~~~~~~v~~~~~-f~~~~~~~~~f-~~~~~~ 78 (491)
|+|++||||.++|..+|.+.......+ .+-. .+.+.+..+...+..++...-+.+.+.+ +.. .+.+.. -..++|
T Consensus 154 ~w~~dneY~~~~~~~~~~~~~f~~wLk-~~yg-~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e--~~~~~~~ld~~~f 229 (673)
T COG1874 154 TWQNDNEYGGHPCYCDYCQAAFRLWLK-KGYG-SLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE--LPLPGLYLDYRRF 229 (673)
T ss_pred EEEccCccCCccccccccHHHHHHHHH-hCcc-hHHhhhhhhhhhhcccccccHHhhcCCCCccc--cCCccchhhHhhh
Confidence 589999999988777787777775555 3443 4433443333334444433211111222 211 122221 123344
Q ss_pred cCC--CCCCCcccccccccc-cccCCCCcCCC-HHHHHHHHHHHHHcCCeeeEEEeecccCCC------CcCCCCCC-CC
Q 011205 79 NAP--GKSPPLSSEFYTGWL-THWGEKIAKTD-ADFTASYLEKILSQNGSAVLYMAHGGTNFG------FYNGANTG-NT 147 (491)
Q Consensus 79 ~~~--~~~P~~~~E~~~Gwf-d~WG~~~~~~~-~~~~~~~~~~~l~~g~s~n~YM~hGGTNfG------~~~Ga~~~-~~ 147 (491)
... -..+....|.+-+|| +.|..+..... .+.-...+.+.|....+-||||||+|++|+ |++|++.. ..
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~swdny~~~~~~~~~~~~~h~l~r~~~~~~~~~ 309 (673)
T COG1874 230 ESEQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASWDNYPAWHRGRDFTKFIHDLFRNGKQGQPFW 309 (673)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhhhhhhhhccccchhhhhHHHHHhhccCCcee
Confidence 210 123677888999999 88876654444 455556677777777778999999999999 88888721 11
Q ss_pred CCCCCCcccccCCCCccCCCCCCChH--HHHHHHH-HHHhhCCCCCCCCCCCCCccccccee---eeceeeccccccccC
Q 011205 148 ESDYQPDLTSYDYDAPIKESGDVDNP--KFKAIRR-VVEKFSPASLPSVLPDNEKAGFGPIQ---LQKTALLFDLLDVLD 221 (491)
Q Consensus 148 ~~~~~p~~TSYDY~Api~E~G~~t~p--Ky~~lr~-~i~~~~~~~l~~~p~~~~~~~y~~v~---~~~~~~L~~~l~~~~ 221 (491)
....+|.++++++.+.+.+.|..+-| ++.+... .+..|.-. .++-|. ++ .-+-+. +.+...++.....+
T Consensus 310 ~me~~P~~vn~~~~n~~~~~G~~~l~s~~~~A~g~~~v~yf~~r-~s~~~~--e~-~h~~v~~~v~~~~~~~~~ev~~v- 384 (673)
T COG1874 310 LMEQLPSVVNWALYNKLKRPGALRLPSLQAVAHGADNVIYFQWR-QSPSPR--EK-SHDGVISPVLSENTRLFREVAAV- 384 (673)
T ss_pred eccCCcchhhhhhccCCCCCccccccccccccccCceEEEEEee-cCCChH--hh-ccCcccccccCccccccchhhhh-
Confidence 12356999999999999999993222 3322221 11111000 000000 00 000000 01112222221111
Q ss_pred CCCccccCCCcc--ccccCCccceEEEEEeeCCCCCCceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEccccceeEe
Q 011205 222 PADVVESENPLS--MESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRALSL 299 (491)
Q Consensus 222 ~~~~~~s~~p~~--~E~lgq~~GyvlYrt~~~~~~~~~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~~~~~~~l 299 (491)
.+.-.+++ ||...+.+.+++|+.+..=. .......+..++.+.+.- .++.-.+-+ ....+++
T Consensus 385 ----g~~l~~~~~~~~~~~~a~va~~~d~E~~Wa--~~~~~~~~~~~~~Y~~~~---------~~~~~~l~~-~~i~vdv 448 (673)
T COG1874 385 ----GEELKSLPDVMEARVQAYVAILFDYESRWA--FEDEDGGESSALRYPFGV---------LHLYEALIE-TGIPVDV 448 (673)
T ss_pred ----hHhhhccccccccccccceeEEeecccccc--cccccccccccccchhhh---------hhhHHHHHh-hCCceeE
Confidence 11112333 88889999999997654311 111111222234444333 111111111 1111221
Q ss_pred --cccccCCCcEEEE---EEEeCCccccCcCccCCcc-----ceeeEEECCEEecCeEEEeecCCCCCCCCCcccccccc
Q 011205 300 --PNFRCGSNISLFV---LVENMGRVNYGPYMFDEKG-----ILSSVYLGGKVLRGWKMIPVPFHNLNEVPKISPILEVA 369 (491)
Q Consensus 300 --p~~~~~~~~~L~I---LvEn~Gr~NyG~~~~~~KG-----I~g~V~l~g~~l~~W~~~~l~l~~~~~~~~~~~~~~~~ 369 (491)
+.....+-..|.+ +.+++++++++..+.+.-| ++.++......+..|.-.+.+.+. ...
T Consensus 449 i~~~~~~~~y~~L~~p~l~~~~~~~~~r~~~f~~~gG~~v~g~~sG~~~e~~~~~~~~~~g~~~d~-------i~~---- 517 (673)
T COG1874 449 ILEGSELDGYKLLIVPVLYIVNSERVDRAKKFVENGGTLVLGPRSGIVNEHDFLVTGGYPGLLRDL-------IGI---- 517 (673)
T ss_pred ecCcccccCceEEEEeeeeccchhhHhhHHHHHhcCCeEEEeeecccccchheeecCCCCcchHHh-------cCc----
Confidence 1111223345555 7899999998877655444 333333332233344432222221 000
Q ss_pred cccchhhhhhhhccccCCCCCCCceEEEEEEeeCCCCCccceEEEeCCCceEEEEECCeeceeccCCCCCeeeEecCCcc
Q 011205 370 YSGLIKASARKKLEHNAGNITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPI 449 (491)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~~~~~p~~y~~~f~i~~~~~~~Dt~Ld~~g~~KG~v~VNG~nlGRYW~~~GPQ~tlYVP~~~ 449 (491)
| .....+.+.+.+-++....+ |++++++.|.+++=+.|+..||||| ..+++-..+|++.|
T Consensus 518 ---~------------~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~~~~~v~~~~ 577 (673)
T COG1874 518 ---W------------VGEVDQLPPNEVNVVVRNGK----DTTYGLKLWRATVDGEGGTVLARFR-EDGYAGGPAVTRRW 577 (673)
T ss_pred ---c------------cccccccChhHhhhheeccC----cceeccccceeeeeccCCeEEEEEe-ccCcCCCcccchhh
Confidence 0 01112245555555555432 8899999999999999999999999 89999999999999
Q ss_pred ccccCcEEEEEEecC
Q 011205 450 LRHGENLVVIFELES 464 (491)
Q Consensus 450 Lk~G~N~ivvfE~~~ 464 (491)
+++|.+..++++..+
T Consensus 578 ~~~g~~~~l~~~~~g 592 (673)
T COG1874 578 YGGGKAYYLGFRTSG 592 (673)
T ss_pred hcCcceeEEEeccCc
Confidence 999999999998655
No 5
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.35 E-value=2.1e-12 Score=112.52 Aligned_cols=72 Identities=32% Similarity=0.601 Sum_probs=54.7
Q ss_pred CCCCceEEEEEEeeCCCCCccceEEE---e--CCCceEEEEECCeeceeccCCCCCeeeEecCCccccccCcEEEE-EEe
Q 011205 389 ITKEPAFYVGRFSIDKVNQVKDTYLS---F--SGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGENLVVI-FEL 462 (491)
Q Consensus 389 ~~~~p~~y~~~f~i~~~~~~~Dt~Ld---~--~g~~KG~v~VNG~nlGRYW~~~GPQ~tlYVP~~~Lk~G~N~ivv-fE~ 462 (491)
...+..|||++|+... .|+.|. . ..+.+++|||||++|||||+.+|||++|+||+.+|+.++|.|+| .+.
T Consensus 32 ~~~g~~~Yrg~F~~~~----~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~il~~~n~v~~vl~~~ 107 (111)
T PF13364_consen 32 FHAGYLWYRGTFTGTG----QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGILKYGNNVLVVLWDN 107 (111)
T ss_dssp SSSCEEEEEEEEETTT----EEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTTBTTCEEEEEEEEE-
T ss_pred cCCCCEEEEEEEeCCC----cceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCceeecCCCEEEEEEEeC
Confidence 4568999999996432 245444 2 46789999999999999999999999999999999987555544 454
Q ss_pred cC
Q 011205 463 ES 464 (491)
Q Consensus 463 ~~ 464 (491)
++
T Consensus 108 ~g 109 (111)
T PF13364_consen 108 MG 109 (111)
T ss_dssp ST
T ss_pred CC
Confidence 44
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.22 E-value=1e-05 Score=70.56 Aligned_cols=79 Identities=28% Similarity=0.331 Sum_probs=57.3
Q ss_pred ccccccCCccceEEEEEeeCCCCC--Cce-eEec-CcCcEEEEEEcCCCCCCCCCCeEEEEEEc-cc-cceeEecccc-c
Q 011205 232 LSMESVGQMFGFLLYVSEFGGKDY--GSS-LLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIER-WS-NRALSLPNFR-C 304 (491)
Q Consensus 232 ~~~E~lgq~~GyvlYrt~~~~~~~--~~~-L~i~-~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~-~~-~~~~~lp~~~-~ 304 (491)
+.+-.++...|++|||++|..... ... |.+. +.+.+++|||| |.++|+... .. ..++.+|... .
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVN---------G~~~G~~~~~~g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVN---------GWFLGSYWPGIGPQTTFSVPAGILK 95 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEET---------TEEEEEEETTTECCEEEEE-BTTBT
T ss_pred eccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEEC---------CEEeeeecCCCCccEEEEeCceeec
Confidence 567778899999999999975432 223 4444 68999999999 999999873 22 3568888632 3
Q ss_pred CCCcEEEEEEEeCCc
Q 011205 305 GSNISLFVLVENMGR 319 (491)
Q Consensus 305 ~~~~~L~ILvEn~Gr 319 (491)
.+.+.|.+|+++||+
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 356788999999996
No 7
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.67 E-value=0.00022 Score=65.74 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred cCCccceEEEEEeeCCCC----CCceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEccc-cceeEecccccCCC-cEE
Q 011205 237 VGQMFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSN-ISL 310 (491)
Q Consensus 237 lgq~~GyvlYrt~~~~~~----~~~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~~-~~~~~lp~~~~~~~-~~L 310 (491)
.....|.+|||++|..+. ....|.+.++.+.|.|||| |+++|...... ...++++.....++ |+|
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vN---------G~~vg~~~~~~~~~~~dIt~~l~~g~~N~l 133 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVN---------GKLVGSHEGGYTPFEFDITDYLKPGEENTL 133 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEET---------TEEEEEEESTTS-EEEECGGGSSSEEEEEE
T ss_pred ccccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeC---------CeEEeeeCCCcCCeEEeChhhccCCCCEEE
Confidence 345789999999997653 3456788899999999999 99999975422 23456654444455 899
Q ss_pred EEEEEeCCccccCcCc--cCCccceeeEEEC
Q 011205 311 FVLVENMGRVNYGPYM--FDEKGILSSVYLG 339 (491)
Q Consensus 311 ~ILvEn~Gr~NyG~~~--~~~KGI~g~V~l~ 339 (491)
.|.|.+...-.+-+.. ....||.++|.|-
T Consensus 134 ~V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 134 AVRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EEEEeecCCCceeecCcCCccCccccEEEEE
Confidence 9999865543331122 2378999999873
No 8
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.14 E-value=0.0016 Score=59.97 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=51.6
Q ss_pred CCCceEEEEEEeeCCCCCccceEEEeCCC-ceEEEEECCeeceeccCCCCCeeeEecCCccccccC-cEEEEEE
Q 011205 390 TKEPAFYVGRFSIDKVNQVKDTYLSFSGW-GKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGE-NLVVIFE 461 (491)
Q Consensus 390 ~~~p~~y~~~f~i~~~~~~~Dt~Ld~~g~-~KG~v~VNG~nlGRYW~~~GPQ~tlYVP~~~Lk~G~-N~ivvfE 461 (491)
..+..|||.+|++|.......++|.+.+. ....|||||+-+|+-.....| .++=|+. .|++|. |+|.|.=
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~-~~~dIt~-~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTP-FEFDITD-YLKPGEENTLAVRV 137 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS--EEEECGG-GSSSEEEEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCC-eEEeChh-hccCCCCEEEEEEE
Confidence 35689999999998643224689999986 689999999999996522233 2333764 789888 9888743
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.51 E-value=0.17 Score=56.54 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=60.4
Q ss_pred CccceEEEEEeeCCCC----CCceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEccc-cceeEecccccCC-CcEEEE
Q 011205 239 QMFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGS-NISLFV 312 (491)
Q Consensus 239 q~~GyvlYrt~~~~~~----~~~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~~-~~~~~lp~~~~~~-~~~L~I 312 (491)
...|..|||++|..+. ....|.+.++...|.|||| |+.+|...... ...++|......+ .++|.|
T Consensus 62 ~~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lN---------G~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V 132 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVN---------GQEVMEHKGGYTPFEADITPYVYAGKSVRITV 132 (604)
T ss_pred CCcccEEEEEEEECCcccCCCEEEEEECcccceEEEEEC---------CEEeeeEcCCccceEEeCchhccCCCceEEEE
Confidence 3568899999997652 3567889999999999999 99999764321 2234444322223 459999
Q ss_pred EEEeCCccc---cCcC---------------ccCCccceeeEEEC
Q 011205 313 LVENMGRVN---YGPY---------------MFDEKGILSSVYLG 339 (491)
Q Consensus 313 LvEn~Gr~N---yG~~---------------~~~~KGI~g~V~l~ 339 (491)
.|.|.-+.. .|.. ....-||..+|.|.
T Consensus 133 ~v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~ 177 (604)
T PRK10150 133 CVNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLY 177 (604)
T ss_pred EEecCCCcccCCCCccccCCccccccccccccccccCCCceEEEE
Confidence 998742210 1111 11257999999984
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.36 E-value=0.1 Score=61.84 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=47.6
Q ss_pred CCceEEEEEEeeCCCCCccceEEEeCCC-ceEEEEECCeeceeccCCCCCeeeE-e-cCCccccccCcEEEEE
Q 011205 391 KEPAFYVGRFSIDKVNQVKDTYLSFSGW-GKGIAFVNEFNLGRFWPSFGPQCDL-Y-VPAPILRHGENLVVIF 460 (491)
Q Consensus 391 ~~p~~y~~~f~i~~~~~~~Dt~Ld~~g~-~KG~v~VNG~nlGRYW~~~GPQ~tl-Y-VP~~~Lk~G~N~ivvf 460 (491)
.+..|||.+|++|..-...-++|.+.|- ....|||||+-+|+- .|--..+ + |.. +||.|+|+|+|-
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~---~g~~~pfefDIT~-~l~~G~N~LaV~ 176 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFS---KGSRLTAEFDISA-MVKTGDNLLCVR 176 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccc---cCCCccEEEEcch-hhCCCccEEEEE
Confidence 4568999999998643223589999985 668999999999962 2322222 3 554 788999998873
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.76 E-value=0.098 Score=62.03 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=47.4
Q ss_pred CCceEEEEEEeeCCCCCcc-ceEEEeCCC-ceEEEEECCeeceeccCCCCCeeeE-e-cCCccccccCcEEEEEE
Q 011205 391 KEPAFYVGRFSIDKVNQVK-DTYLSFSGW-GKGIAFVNEFNLGRFWPSFGPQCDL-Y-VPAPILRHGENLVVIFE 461 (491)
Q Consensus 391 ~~p~~y~~~f~i~~~~~~~-Dt~Ld~~g~-~KG~v~VNG~nlGRYW~~~GPQ~tl-Y-VP~~~Lk~G~N~ivvfE 461 (491)
++..|||.+|++|..-... .++|.+.|- ....|||||+-+|.- .|--..+ + | -+.|++|+|+|+|--
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~---~g~~~pfefDI-T~~l~~G~N~L~V~V 189 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYS---QDSRLPAEFDL-SPFLRAGENRLAVMV 189 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEee---cCCCceEEEEC-hhhhcCCccEEEEEE
Confidence 4679999999998642112 589999985 779999999999952 2211111 2 4 356889999987743
No 12
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.026 Score=62.23 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=28.1
Q ss_pred cccccCCCCccCCCCCCChHHHHHHHHHHHhhC
Q 011205 154 DLTSYDYDAPIKESGDVDNPKFKAIRRVVEKFS 186 (491)
Q Consensus 154 ~~TSYDY~Api~E~G~~t~pKy~~lr~~i~~~~ 186 (491)
.+|||||||||+ |..++|||.++|.++..+.
T Consensus 300 ~atsy~~dap~d--gl~~~pk~ghlk~~hts~d 330 (649)
T KOG0496|consen 300 IATSYDYDAPLD--GLLRQPKYGHLKPLHTSYD 330 (649)
T ss_pred cccccccccccc--hhhcCCCccccccchhhhh
Confidence 599999999999 9999999999998887774
No 13
>PRK10150 beta-D-glucuronidase; Provisional
Probab=93.04 E-value=0.31 Score=54.57 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCceEEEEEEeeCCCCCccceEEEeCCC-ceEEEEECCeeceeccCCCCCeeeEecCCccccccCc-EEEE
Q 011205 391 KEPAFYVGRFSIDKVNQVKDTYLSFSGW-GKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGEN-LVVI 459 (491)
Q Consensus 391 ~~p~~y~~~f~i~~~~~~~Dt~Ld~~g~-~KG~v~VNG~nlGRYW~~~GPQ~tlYVP~~~Lk~G~N-~ivv 459 (491)
.+..||+.+|++|......-++|.+.|- ....|||||.-||+--...-|- ++=|. +.|+.|+| +|.|
T Consensus 64 ~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f-~~DIT-~~l~~G~~n~L~V 132 (604)
T PRK10150 64 VGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPF-EADIT-PYVYAGKSVRITV 132 (604)
T ss_pred cccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCccce-EEeCc-hhccCCCceEEEE
Confidence 4679999999998642223589999986 6799999999999743111231 22254 47888866 6655
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.62 E-value=0.43 Score=56.72 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=60.4
Q ss_pred cceEEEEEeeCCCC----CCceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEcc-ccceeEecccccCCCcEEEEEEE
Q 011205 241 FGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPNFRCGSNISLFVLVE 315 (491)
Q Consensus 241 ~GyvlYrt~~~~~~----~~~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~-~~~~~~lp~~~~~~~~~L~ILvE 315 (491)
.|-.|||++|..+. ....|.+.++...|.|||| |++||.-... ....++|......+.|+|.|.|.
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvN---------G~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~ 178 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVN---------GQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVM 178 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEEC---------CEEeccccCCCccEEEEcchhhCCCccEEEEEEE
Confidence 35679999997652 3467888999999999999 8888875432 12345554333346799999997
Q ss_pred eCCccccCcCccC-----CccceeeEEECCE
Q 011205 316 NMGRVNYGPYMFD-----EKGILSSVYLGGK 341 (491)
Q Consensus 316 n~Gr~NyG~~~~~-----~KGI~g~V~l~g~ 341 (491)
+... +.++++ .-||..+|.|--.
T Consensus 179 ~~~d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 179 QWAD---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ecCC---CCccccCCccccccccceEEEEEe
Confidence 5432 222322 3799999998543
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=90.87 E-value=0.99 Score=53.73 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=58.6
Q ss_pred cceEEEEEeeCCCC----C-CceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEccc-cceeEecccccCCCcEEEEEE
Q 011205 241 FGFLLYVSEFGGKD----Y-GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSNISLFVLV 314 (491)
Q Consensus 241 ~GyvlYrt~~~~~~----~-~~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~~-~~~~~lp~~~~~~~~~L~ILv 314 (491)
.+-.|||++|..+. . ...|.+.++...+.|||| |+++|.-.... ...++|......+.|+|.|.|
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvN---------G~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V 189 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCN---------GRWVGYSQDSRLPAEFDLSPFLRAGENRLAVMV 189 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEEC---------CEEEEeecCCCceEEEEChhhhcCCccEEEEEE
Confidence 57889999997752 2 467888999999999999 99999754311 223455432234678999988
Q ss_pred EeCCccccCcCccC-----CccceeeEEEC
Q 011205 315 ENMGRVNYGPYMFD-----EKGILSSVYLG 339 (491)
Q Consensus 315 En~Gr~NyG~~~~~-----~KGI~g~V~l~ 339 (491)
-.-- -|.++++ ..||..+|.|-
T Consensus 190 ~~~s---dgs~~e~qd~w~~sGI~R~V~L~ 216 (1027)
T PRK09525 190 LRWS---DGSYLEDQDMWRMSGIFRDVSLL 216 (1027)
T ss_pred EecC---CCCccccCCceeeccccceEEEE
Confidence 4321 1222321 36999999984
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=88.67 E-value=0.98 Score=47.39 Aligned_cols=145 Identities=10% Similarity=0.194 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhcCCceEEEeccCCc--cc--cccCCCcCCCeeeeecCCCC------CCCCch-h--HHhHHHhcCC
Q 011205 15 KEYLHHLVTLARAHLGKDIILYTTDGGT--RE--TLLKGTIRGDAVFAAVDFST------GAEPWP-I--FKLQKQFNAP 81 (491)
Q Consensus 15 ~~Ym~~L~~~~~~~~Gi~vpl~t~dg~~--~~--~~~~G~~~~~~v~~~~~f~~------~~~~~~-~--f~~~~~~~~~ 81 (491)
.+|+.++++.+|++ .-+.|+.|+-... .. ..... ...|+.+..+++. ..++.. . ..+.+.. .
T Consensus 212 ~~~~~~~~~~ir~~-~p~~~vt~n~~~~~~~~~d~~~~a--~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~--~ 286 (374)
T PF02449_consen 212 AEFFRWQADIIREY-DPDHPVTTNFMGSWFNGIDYFKWA--KYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSL--A 286 (374)
T ss_dssp HHHHHHHHHHHHHH-STT-EEE-EE-TT---SS-HHHHG--GGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHh-CCCceEEeCccccccCcCCHHHHH--hhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhh--c
Confidence 48999999999994 5667776653321 00 11111 1134665555432 111111 1 1123443 2
Q ss_pred CCCCCcccccccccccccCCCCcCCCHHHHHHHHHHHHHcCCe-eeEEEeecccCCCCcCCCCCCCCCCCCCCcccccCC
Q 011205 82 GKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNGS-AVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDY 160 (491)
Q Consensus 82 ~~~P~~~~E~~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g~s-~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYDY 160 (491)
..+|++++|..+| -..|+.......+..+...+-.-++.|+. +.|+=+ ..-.+|. . .| .
T Consensus 287 ~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~----E------~~--------~ 346 (374)
T PF02449_consen 287 KGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGA----E------QF--------H 346 (374)
T ss_dssp TT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSST----T------TT--------S
T ss_pred CCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCc----h------hh--------h
Confidence 3689999999999 66676655555567777777788999997 566544 2222331 1 11 1
Q ss_pred CCccCCCC-CCChHHHHHHHHHHHhh
Q 011205 161 DAPIKESG-DVDNPKFKAIRRVVEKF 185 (491)
Q Consensus 161 ~Api~E~G-~~t~pKy~~lr~~i~~~ 185 (491)
.+-|+-+| ..|+ +|.+++++.++.
T Consensus 347 ~g~~~~dg~~~~~-~~~e~~~~~~~l 371 (374)
T PF02449_consen 347 GGLVDHDGREPTR-RYREVAQLGREL 371 (374)
T ss_dssp --SB-TTS--B-H-HHHHHHHHHHHH
T ss_pred cccCCccCCCCCc-HHHHHHHHHHHH
Confidence 25567778 8885 999999887664
No 17
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=75.03 E-value=4.2 Score=37.95 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=32.2
Q ss_pred ceEEEeCCCceEEEEECCeeceeccCCCC----CeeeEecC---CccccccCcEEEEE
Q 011205 410 DTYLSFSGWGKGIAFVNEFNLGRFWPSFG----PQCDLYVP---APILRHGENLVVIF 460 (491)
Q Consensus 410 Dt~Ld~~g~~KG~v~VNG~nlGRYW~~~G----PQ~tlYVP---~~~Lk~G~N~ivvf 460 (491)
...|..++.++=.+||||+.+|+--..=| +...+|.- .++|++|+|.|.|.
T Consensus 5 ~A~l~isa~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 5 SARLYISALGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp --EEEEEEESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEE
T ss_pred EEEEEEEeCeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEE
Confidence 45677778888999999999998431111 23334432 67999999998875
No 18
>PLN03059 beta-galactosidase; Provisional
Probab=64.35 E-value=28 Score=40.45 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=48.1
Q ss_pred CCCceEEEEEEeeCCCCCc----cceEEEeCCC-ceEEEEECCeeceeccC-CCCCeeeEecCCc-cccccCcEEEEEEe
Q 011205 390 TKEPAFYVGRFSIDKVNQV----KDTYLSFSGW-GKGIAFVNEFNLGRFWP-SFGPQCDLYVPAP-ILRHGENLVVIFEL 462 (491)
Q Consensus 390 ~~~p~~y~~~f~i~~~~~~----~Dt~Ld~~g~-~KG~v~VNG~nlGRYW~-~~GPQ~tlYVP~~-~Lk~G~N~ivvfE~ 462 (491)
..+-.||+++|+++..+.. ....|.+.+. -..+|||||.-+|.-+- ..+++ +-++.+ =|+.|.|+|-||-+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~--~~~~~~v~l~~g~n~L~iLse 545 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPK--LTFSQNVKLTVGINKISLLSV 545 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcc--eEEecccccCCCceEEEEEEE
Confidence 3467999999998754311 1234777766 45999999999998542 23444 444433 26789999988754
No 19
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=58.32 E-value=9.6 Score=35.61 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCceEEEEECCeeceeccC-CCC-------------Cee--eEecCCccccccCcEEEEEEecC
Q 011205 417 GWGKGIAFVNEFNLGRFWP-SFG-------------PQC--DLYVPAPILRHGENLVVIFELES 464 (491)
Q Consensus 417 g~~KG~v~VNG~nlGRYW~-~~G-------------PQ~--tlYVP~~~Lk~G~N~ivvfE~~~ 464 (491)
.-++=.|.||| ..+..+. ..| -.+ ++-||+..|++|.|+|.+=-..+
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34667899999 6666552 122 111 12399999999999997644344
No 20
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=57.63 E-value=15 Score=36.77 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCccceEEEEEeeCCCC-------CCceeEecCcCcEEEEEEcCC
Q 011205 238 GQMFGFLLYVSEFGGKD-------YGSSLLISKVHDRAQVFISCP 275 (491)
Q Consensus 238 gq~~GyvlYrt~~~~~~-------~~~~L~i~~~~D~a~Vfvn~~ 275 (491)
.+.+|.+||+-++..+. +...|++.++|..|.|+|||.
T Consensus 84 rdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~ 128 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGV 128 (297)
T ss_pred ccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcce
Confidence 45789999999887652 457888999999999999943
No 21
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=42.47 E-value=73 Score=25.99 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=40.5
Q ss_pred ccceEEEEEe-eCCCCCCceeEecCcCcEEEEEEcCCCCCCCCCCeEEEEEEccccceeEecccccCCCcEEEEEEEeCC
Q 011205 240 MFGFLLYVSE-FGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMG 318 (491)
Q Consensus 240 ~~GyvlYrt~-~~~~~~~~~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~~~~~~~~~~~lp~~~~~~~~~L~ILvEn~G 318 (491)
..|-+++... +. ......|++.+-....+-||| |+++|..... ..+.++.. ..+.++|++ ++..|
T Consensus 17 ~~g~~~~~~~~~~-~~~~l~l~a~~~~~~~~W~vd---------g~~~g~~~~~--~~~~~~~~-~~G~h~l~v-vD~~G 82 (89)
T PF06832_consen 17 PDGAVLALDPGIP-ERQPLVLKAAGGRGPVYWFVD---------GEPLGTTQPG--HQLFWQPD-RPGEHTLTV-VDAQG 82 (89)
T ss_pred CCCCEEEeCCCCC-ccceEEEEEeCCCCcEEEEEC---------CEEcccCCCC--CeEEeCCC-CCeeEEEEE-EcCCC
Confidence 3455555542 22 223445555555669999999 8898776432 34444431 247788877 88888
Q ss_pred cc
Q 011205 319 RV 320 (491)
Q Consensus 319 r~ 320 (491)
+.
T Consensus 83 ~~ 84 (89)
T PF06832_consen 83 RS 84 (89)
T ss_pred CE
Confidence 75
No 22
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=40.57 E-value=1.2e+02 Score=29.81 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEeccCCcccc--------------ccCCCcCCCeeeeecCCCCC-----CCCchhHHh
Q 011205 14 DKEYLHHLVTLARAHLGKDIILYTTDGGTRET--------------LLKGTIRGDAVFAAVDFSTG-----AEPWPIFKL 74 (491)
Q Consensus 14 d~~Ym~~L~~~~~~~~Gi~vpl~t~dg~~~~~--------------~~~G~~~~~~v~~~~~f~~~-----~~~~~~f~~ 74 (491)
+.+|+...-+.||+ ..-++.||.+|-..... ...|. + +..+++.+. .++...-+.
T Consensus 101 G~~~i~~af~~ar~-~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~-~----iDgiGlQ~H~~~~~~~~~~~~~~ 174 (254)
T smart00633 101 GEDYIEKAFRYARE-ADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGV-P----IDGIGLQSHLSLGSPNIAEIRAA 174 (254)
T ss_pred ChHHHHHHHHHHHH-hCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCC-c----cceeeeeeeecCCCCCHHHHHHH
Confidence 45899999999999 67789999997432100 01121 0 122233221 112222334
Q ss_pred HHHhcCCCCCCCcccccccccccccCCCCcCCCHHHHHHHHHHHHHcCCeeeEEEeecccCCCCcCCCCCCCCCCCCCCc
Q 011205 75 QKQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPD 154 (491)
Q Consensus 75 ~~~~~~~~~~P~~~~E~~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g~s~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~ 154 (491)
++++... ..|.++||+-....+ ....-++.+...+..+++..+-.++.|+ |++.|.. +.+
T Consensus 175 l~~~~~~-g~pi~iTE~dv~~~~-----~~~~qA~~~~~~l~~~~~~p~v~gi~~W------g~~d~~~-------W~~- 234 (254)
T smart00633 175 LDRFASL-GLEIQITELDISGYP-----NPQAQAADYEEVFKACLAHPAVTGVTVW------GVTDKYS-------WLD- 234 (254)
T ss_pred HHHHHHc-CCceEEEEeecCCCC-----cHHHHHHHHHHHHHHHHcCCCeeEEEEe------CCccCCc-------ccC-
Confidence 5555333 679999999764421 0011123344444445554433456554 6654322 111
Q ss_pred ccccCCCCccCCCCCCChHHHHH
Q 011205 155 LTSYDYDAPIKESGDVDNPKFKA 177 (491)
Q Consensus 155 ~TSYDY~Api~E~G~~t~pKy~~ 177 (491)
++.-+++++++++++ -|..
T Consensus 235 ---~~~~~L~d~~~~~kp-a~~~ 253 (254)
T smart00633 235 ---GGAPLLFDANYQPKP-AYWA 253 (254)
T ss_pred ---CCCceeECCCCCCCh-hhhc
Confidence 134468899999984 6643
No 23
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.99 E-value=1.1e+02 Score=23.62 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=16.9
Q ss_pred eeEecCcCcEEEEEEcCCCCCCCCCCeEEEE
Q 011205 258 SLLISKVHDRAQVFISCPTEDNSGRPTYVGT 288 (491)
Q Consensus 258 ~L~i~~~~D~a~Vfvn~~~~~~~~~g~~vG~ 288 (491)
.|.|...-..|.|||| |+++|.
T Consensus 3 ~l~V~s~p~gA~V~vd---------g~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVD---------GKYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEEC---------CEEecc
Confidence 4566665667899999 888884
Done!