BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011206
(491 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 29/278 (10%)
Query: 216 ERLEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQ 269
E L+ L+ +GV K DV +LLR E +++ + FL LG+ ++++G
Sbjct: 146 ETLQKLVQLGVDLSKIEKHPDVANLLLR------LNFEKDIKQILLFLKDLGLEDNQLGP 199
Query: 270 IIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTR 326
+ ++FS +EN LK V YL + ++ + +V+ +P +L V+R+D R
Sbjct: 200 FLTKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIACMVKNAPFLLSFSVERLD----NR 253
Query: 327 CIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQ 386
F KEL +V + P+LL S++ + +G ++++I ++ + +
Sbjct: 254 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPK 313
Query: 387 VLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---P 443
+L+ + + L + Y+ N ++ + K+P + + +I+ RH FL L KA P
Sbjct: 314 MLTAN-KRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVF-KIKERHLFLAYLGKAQYDP 371
Query: 444 KGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 478
P +SL F+ DE FC++ A +V+ + F + L
Sbjct: 372 AKPNYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 216 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 275
E L+ L+ +GV + + +L E +++ + FL +GI ++++G +
Sbjct: 154 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 213
Query: 276 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 332
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R F K
Sbjct: 214 AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 267
Query: 333 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 392
EL +V + P+LL S++ + +G ++++I ++ + ++L+ +
Sbjct: 268 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 326
Query: 393 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 445
K K T + +HN + + K+P + L +++ RH FL L +A P
Sbjct: 327 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK 381
Query: 446 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 478
P +SL IP DE FC++ A +V + F + L
Sbjct: 382 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 417
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 51/265 (19%)
Query: 218 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 277
L +L VG++ + L + P IL +E LE+ VA+L S N++I Q+++ P L
Sbjct: 180 LLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVSRAPYL 238
Query: 278 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKELGA 336
+SVE L + + E+G++ K +V P++L +++ + N + E G
Sbjct: 239 LLFSVER-LDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVC--QVEFGF 295
Query: 337 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 396
R++V ++ K P++L S + L
Sbjct: 296 ERNEVQQIAFKTPKILTAS-------------------------------------KKRL 318
Query: 397 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL-- 451
+ + YL N + LT++P + L RI+ RH FL+ L +A P P +SL
Sbjct: 319 RQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISLDQ 377
Query: 452 --FIPTDECFCQKWAGTTVDKYLAF 474
+P DE FC + A ++ + F
Sbjct: 378 LVSLP-DEVFCTEIAKASMQDFEKF 401
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 37/280 (13%)
Query: 218 LEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQII 271
L+ L+ +GV K D +LLR L++ E +++ + FL LG+ ++++G +
Sbjct: 151 LQKLVQLGVDLSKIEKHPDAANLLLR----LDF--EKHIKQILLFLKDLGLEDNQLGPFL 204
Query: 272 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCI 328
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R
Sbjct: 205 TKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIARMVKNAPFLLSFSVERLD----NRLG 258
Query: 329 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVL 388
F KEL +V + P+LL S++ + +G ++++I ++ + ++L
Sbjct: 259 FFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKML 318
Query: 389 SLSLEDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA-- 442
+ + K K T + + +HN + + K+P + + +I+ RH FL L +A
Sbjct: 319 TAN-----KRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVF-KIKERHLFLAYLGRAQY 372
Query: 443 -PKGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 478
P P +SL F+ D+ FC++ A +++ + F + L
Sbjct: 373 DPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412
>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
GN=Mterf PE=2 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 175 LDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLE-YLLSVGVKQRDVRR 233
L+E+ LL L T G+ I M R P + + + L+ +LLS G + +
Sbjct: 50 LEEEREDLLSNLVTMGVD----IDMARRRQPGVFNKAVTNEQELKLFLLSKGASDKVIGS 105
Query: 234 ILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP-SLFSYSVENSLKPTVRY 292
I+ R P+ + T E +L + + +I I+ +P S F + +L+ +++
Sbjct: 106 IISRYPRAITRTPE-SLSKRWDLWRKIMASDLEIVNILERSPESFFRSNNNLNLENNIKF 164
Query: 293 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA------PRDDVVKMVT 346
L VG+ K L +++ +P+ +++ N + + +E G PRD V K+++
Sbjct: 165 LC-SVGLTHKCLCRLLTNAPRTFSNSLNL--NKQMVEFLQETGMSLGHNDPRDFVRKIIS 221
Query: 347 KHPQLL 352
K+P +L
Sbjct: 222 KNPSIL 227
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 24/241 (9%)
Query: 157 MTRNATENRYQRLSEEI------ELDEKWLP---LLDYLSTFGLKESHFIQMYERHMPSL 207
MTR + EN ++ +S + D + L LL L T G+ I M + P +
Sbjct: 41 MTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVD----IDMARKRQPGV 96
Query: 208 QINVCSARERLE-YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSK 266
+ + + L+ +LLS G + + I+ R P+ + T E NL + + +
Sbjct: 97 FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLE 155
Query: 267 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTR 326
I I+ +P F S N + VG+ K L +++ +P+ +D+ N +
Sbjct: 156 IVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL--NKQ 213
Query: 327 CIFLSKELGA------PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKV 380
+ + G P D V K++ K+P +L S + I FLRS NS+ L V
Sbjct: 214 MVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR-VKANIEFLRSTFNLNSEELLV 272
Query: 381 L 381
L
Sbjct: 273 L 273
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus
norvegicus GN=Mterf PE=1 SV=1
Length = 374
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Query: 182 LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLE-YLLSVGVKQRDVRRILLRQPQ 240
LL+ L T G+ + M R P + + + L+ +LLS G + + I+ R P+
Sbjct: 52 LLNNLLTMGVD----VDMARRRQPGVFNKAVTNEQELKMFLLSKGASDKVIGSIISRYPR 107
Query: 241 ILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP-SLFSYSVENSLKPTVRYLVEEVGI 299
+ T E +L + + +I I+ +P S F + +L+ +++L VG+
Sbjct: 108 AITRTPE-SLSKRWDLWREIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLC-SVGL 165
Query: 300 NEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA------PRDDVVKMVTKHPQLL 352
K L +++ +P+ +++ N + + +E G P D V K+++K+P +L
Sbjct: 166 THKCLCRLLTSAPRTFSNSLNL--NKQMVEFLQETGISLGHNNPTDFVRKIISKNPSIL 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,736,120
Number of Sequences: 539616
Number of extensions: 8134041
Number of successful extensions: 81614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 63126
Number of HSP's gapped (non-prelim): 9710
length of query: 491
length of database: 191,569,459
effective HSP length: 122
effective length of query: 369
effective length of database: 125,736,307
effective search space: 46396697283
effective search space used: 46396697283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)