Query 011206
Match_columns 491
No_of_seqs 226 out of 1305
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 1E-45 3.4E-50 380.1 22.1 306 148-466 25-342 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 8.9E-46 3E-50 368.1 18.2 258 214-477 5-269 (270)
3 4fp9_B Mterf domain-containing 100.0 7.4E-37 2.5E-41 312.2 18.7 225 249-485 45-280 (335)
4 3mva_O Transcription terminati 100.0 5.6E-34 1.9E-38 292.7 18.0 253 177-439 17-285 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 3.6E-34 1.2E-38 284.5 15.8 217 181-406 7-225 (270)
6 4fp9_B Mterf domain-containing 99.9 1.6E-25 5.5E-30 228.5 16.7 182 213-409 45-227 (335)
7 4fzv_B Mterf domain-containing 99.5 8.9E-13 3.1E-17 117.3 18.3 183 296-485 42-235 (239)
8 4fzv_B Mterf domain-containing 98.6 4.9E-07 1.7E-11 80.5 11.4 145 252-406 35-180 (239)
9 2ca6_A RAN GTPase-activating p 91.9 0.034 1.2E-06 56.1 0.4 9 32-40 305-313 (386)
10 4ae4_A Ubiquitin-associated pr 84.1 9.9 0.00034 32.3 10.7 101 181-298 10-116 (118)
11 4ae4_A Ubiquitin-associated pr 83.0 10 0.00034 32.3 10.2 102 287-407 9-115 (118)
12 1oqy_A HHR23A, UV excision rep 82.4 1.5 5.3E-05 44.7 5.8 46 210-264 164-209 (368)
13 1oqy_A HHR23A, UV excision rep 75.7 1.6 5.5E-05 44.6 3.4 43 177-227 166-208 (368)
14 3ff5_A PEX14P, peroxisomal bio 75.5 3.5 0.00012 30.3 4.2 33 347-383 21-53 (54)
15 1y14_A B32, RPB4, DNA-directed 68.2 1.3 4.6E-05 40.8 0.7 53 176-235 123-177 (187)
16 4aco_A Centromere DNA-binding 67.3 1.1 3.9E-05 49.7 0.0 15 396-410 896-910 (956)
17 3ff5_A PEX14P, peroxisomal bio 66.0 6.3 0.00021 29.0 3.8 24 214-237 30-53 (54)
18 2w84_A Peroxisomal membrane pr 64.9 7.7 0.00026 30.0 4.3 34 347-384 26-59 (70)
19 3ugm_A TAL effector avrbs3/PTH 63.5 34 0.0012 37.7 10.4 56 182-239 279-336 (1047)
20 3ugm_A TAL effector avrbs3/PTH 62.5 13 0.00046 40.9 7.0 81 224-310 253-334 (1047)
21 3hou_D DNA-directed RNA polyme 60.8 3.5 0.00012 38.7 2.0 53 176-235 157-211 (221)
22 1ify_A HHR23A, UV excision rep 59.8 15 0.0005 26.1 4.8 38 360-405 8-45 (49)
23 4hpz_A Dtale2; DNA binding pro 59.8 32 0.0011 35.0 8.8 20 185-205 35-54 (463)
24 3v6t_A DHAX3; tandem repeats, 57.7 95 0.0033 31.9 11.9 111 189-309 99-213 (499)
25 1veg_A NEDD8 ultimate buster-1 57.6 20 0.00067 28.7 5.6 41 360-408 29-69 (83)
26 2knz_A Ubiquilin-4; cytoplasm, 55.8 17 0.00056 26.3 4.6 40 358-405 9-49 (53)
27 2g3q_A Protein YBL047C; endocy 53.8 21 0.00072 24.3 4.7 23 362-384 6-28 (43)
28 1wgn_A UBAP1, ubiquitin associ 53.5 23 0.0008 26.6 5.0 39 361-407 20-58 (63)
29 2dak_A Ubiquitin carboxyl-term 53.0 22 0.00075 26.5 5.0 40 360-407 9-48 (63)
30 1vg5_A RSGI RUH-014, rhomboid 52.7 16 0.00055 28.4 4.3 40 358-405 27-66 (73)
31 1wji_A Tudor domain containing 52.0 24 0.00083 26.4 5.1 38 361-406 10-47 (63)
32 4aco_A Centromere DNA-binding 51.8 3.1 0.0001 46.3 0.0 15 46-60 664-678 (956)
33 2jy5_A Ubiquilin-1; UBA, alter 49.6 27 0.00093 25.0 4.9 27 357-383 9-36 (52)
34 2xzm_O RPS13E; ribosome, trans 49.4 14 0.00049 32.7 3.9 60 203-263 24-83 (153)
35 1wiv_A UBP14, ubiquitin-specif 48.5 27 0.00092 27.0 5.0 38 361-406 30-67 (73)
36 4hpz_A Dtale2; DNA binding pro 47.9 71 0.0024 32.6 9.1 77 186-275 8-86 (463)
37 2w84_A Peroxisomal membrane pr 47.8 17 0.00058 28.1 3.6 26 213-238 34-59 (70)
38 3u5c_N S27A, YS15, 40S ribosom 46.0 13 0.00045 32.9 3.1 36 203-238 22-57 (151)
39 3v6t_A DHAX3; tandem repeats, 45.6 99 0.0034 31.8 9.8 145 189-346 65-213 (499)
40 1z96_A DNA-damage, UBA-domain 44.2 42 0.0015 22.0 4.9 24 361-384 5-28 (40)
41 2knz_A Ubiquilin-4; cytoplasm, 43.7 39 0.0013 24.2 4.9 43 177-226 9-52 (53)
42 2dag_A Ubiquitin carboxyl-term 42.2 46 0.0016 25.7 5.4 40 361-408 10-50 (74)
43 2dai_A Ubadc1, ubiquitin assoc 41.9 44 0.0015 26.5 5.4 40 361-408 30-69 (83)
44 1oy3_D Transcription factor in 41.2 6.8 0.00023 36.2 0.6 15 45-59 250-264 (282)
45 2dah_A Ubiquilin-3; UBA domain 41.0 50 0.0017 23.9 5.2 41 358-406 7-48 (54)
46 1wr1_B Ubiquitin-like protein 37.3 50 0.0017 24.3 4.7 41 357-405 14-55 (58)
47 2oo9_A E3 ubiquitin-protein li 37.3 33 0.0011 24.2 3.4 25 359-383 3-27 (46)
48 2ooa_A E3 ubiquitin-protein li 35.9 30 0.001 25.1 3.1 26 359-384 10-35 (52)
49 2cpw_A CBL-interacting protein 35.2 40 0.0014 25.3 3.9 37 362-406 21-58 (64)
50 3ay5_A Cyclin-D1-binding prote 34.4 9.1 0.00031 38.8 0.3 12 214-225 274-285 (360)
51 2ekk_A UBA domain from E3 ubiq 34.4 32 0.0011 23.9 3.1 35 361-404 10-44 (47)
52 2crn_A Ubash3A protein; compac 34.3 62 0.0021 24.2 4.9 39 363-408 12-50 (64)
53 2kmw_A Uncharacterized protein 33.8 51 0.0017 28.9 5.1 6 41-46 86-91 (150)
54 2dna_A Unnamed protein product 32.7 59 0.002 24.8 4.5 42 357-406 16-58 (67)
55 2d9s_A CBL E3 ubiquitin protei 32.2 90 0.0031 22.7 5.1 25 360-384 9-33 (53)
56 2bwb_A Ubiquitin-like protein 31.3 73 0.0025 22.2 4.6 26 358-383 5-31 (46)
57 1vej_A Riken cDNA 4931431F19; 30.7 78 0.0027 24.5 5.0 41 357-405 26-67 (74)
58 2juj_A E3 ubiquitin-protein li 29.9 44 0.0015 24.5 3.2 39 359-405 6-44 (56)
59 2dkl_A Trinucleotide repeat co 29.3 66 0.0023 25.6 4.5 38 361-406 22-59 (85)
60 2o71_A Death domain-containing 28.6 1.6E+02 0.0053 24.6 7.0 45 156-205 17-61 (115)
61 3hou_D DNA-directed RNA polyme 28.5 8.2 0.00028 36.2 -1.1 22 219-240 165-186 (221)
62 2ooa_A E3 ubiquitin-protein li 27.9 1.1E+02 0.0039 22.1 5.0 23 214-236 11-33 (52)
63 1whc_A RSGI RUH-027, UBA/UBX 3 27.4 91 0.0031 23.2 4.8 39 363-408 12-50 (64)
64 1uxc_A FRUR (1-57), fructose r 27.3 81 0.0028 23.4 4.5 50 294-345 7-56 (65)
65 3us3_A Calsequestrin-1; calciu 27.1 16 0.00055 36.4 0.7 11 30-40 310-320 (367)
66 3us3_A Calsequestrin-1; calciu 27.0 13 0.00046 37.1 0.0 13 30-42 282-294 (367)
67 3e3v_A Regulatory protein RECX 26.9 1.4E+02 0.0047 26.6 6.9 138 181-347 23-162 (177)
68 1vek_A UBP14, ubiquitin-specif 26.6 1.2E+02 0.004 23.9 5.6 41 361-408 30-70 (84)
69 1vg5_A RSGI RUH-014, rhomboid 24.4 1.2E+02 0.0042 23.3 5.1 41 176-223 26-66 (73)
70 1uxc_A FRUR (1-57), fructose r 23.9 49 0.0017 24.7 2.7 46 188-233 9-54 (65)
71 3oq9_A Tumor necrosis factor r 23.8 1.6E+02 0.0053 23.4 5.8 44 179-225 12-56 (86)
72 2jy5_A Ubiquilin-1; UBA, alter 23.2 1.5E+02 0.0051 21.0 5.1 40 176-222 9-49 (52)
73 3j20_Q 30S ribosomal protein S 23.1 56 0.0019 29.1 3.3 38 203-240 22-59 (158)
74 2of5_A Death domain-containing 22.9 3E+02 0.01 22.7 7.8 45 156-205 17-61 (114)
75 2cp8_A NEXT to BRCA1 gene 1 pr 21.4 1.9E+02 0.0065 21.0 5.3 20 357-376 6-25 (54)
76 1wj7_A Hypothetical protein (R 21.1 1.2E+02 0.0042 25.1 4.7 41 358-406 37-78 (104)
77 1y14_A B32, RPB4, DNA-directed 20.8 21 0.00071 32.8 0.0 30 211-240 123-152 (187)
78 1wji_A Tudor domain containing 20.6 1.9E+02 0.0065 21.4 5.4 37 181-224 11-47 (63)
79 2lbc_A Ubiquitin carboxyl-term 20.3 1.6E+02 0.0053 24.7 5.5 81 181-274 5-102 (126)
80 3d5l_A Regulatory protein RECX 20.3 3.5E+02 0.012 24.8 8.5 139 180-347 65-205 (221)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1e-45 Score=380.10 Aligned_cols=306 Identities=17% Similarity=0.233 Sum_probs=268.0
Q ss_pred cccCcccccccchhhhhhhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCC
Q 011206 148 KDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK 227 (491)
Q Consensus 148 ~~~~~~g~l~~~~~~~~~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls 227 (491)
|+ .+||. .....++.+|+++ ..+ .++++++++||+++|++.++|++++.++|.+|.++++++.++++||+++|++
T Consensus 25 ~L-~s~Gl--~~~~~~~~~p~l~-~~s-~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s 99 (343)
T 3mva_O 25 NL-LTMGV--DIDMARKRQPGVF-HRM-ITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTS 99 (343)
T ss_dssp HH-HHHTC--CHHHHHHHCGGGG-GCS-CCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSC
T ss_pred HH-HHcCC--CHHHHHHhCchhh-ccC-cccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCC
Confidence 55 77887 3445566799987 444 5799999999999999999999999999999999988999999999999999
Q ss_pred hhhHHHHHhhCCcccccccc-cchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCC------
Q 011206 228 QRDVRRILLRQPQILEYTVE-NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGIN------ 300 (491)
Q Consensus 228 ~~~l~kli~~~P~iL~~s~e-~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs------ 300 (491)
.+++.++|.++|++|..+.+ +++.|+++||+++|++.++|++++.++|++|++++++ ++++++||+ ++|++
T Consensus 100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~-~lgv~~g~~~p 177 (343)
T 3mva_O 100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQ-AAGLSLGHNDP 177 (343)
T ss_dssp HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHH-HHHHHTTCSCH
T ss_pred HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHH-HhCCCcCCCcH
Confidence 99999999999995544444 4899999999999999999999999999999999986 599999996 67764
Q ss_pred hhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhcc-ccccccccccchHHHHHHHH----HhcCChH
Q 011206 301 EKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQLLHYSIDDGLLPRINFLR----SIGMRNS 375 (491)
Q Consensus 301 ~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~-P~lL~~sie~~L~~kvefL~----~lG~s~e 375 (491)
...|.++++++|.+|+.+ +.+++++++||.+.+|++++++..++.+. |.++..+ .+.|++++.|+. ++||+.+
T Consensus 178 ~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~~lG~s~~ 255 (343)
T 3mva_O 178 ADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLFSLGCTEE 255 (343)
T ss_dssp HHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHHHcCCCHH
Confidence 678999999999999999 56899999999767999999999999885 5788888 578999997776 6999999
Q ss_pred HHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCCCCCCCccccccC
Q 011206 376 DILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPT 455 (491)
Q Consensus 376 ei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~k~~~~L~~l~~s 455 (491)
++..||.++|+||++|. ++|++|++||++ ||++.++|+++|++|+||+| ||+|||++|+..|.... ...+..+.+|
T Consensus 256 ev~~~v~~~P~il~~s~-~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~-~~~~~~l~~s 331 (343)
T 3mva_O 256 EVQKFVLSYPDVIFLAE-KKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLS-TLNITLLSWS 331 (343)
T ss_dssp HHHHHHHTCGGGGGSCH-HHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSS-SSCGGGGGSC
T ss_pred HHHHHHHhCCchhcccH-HHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCC-CCcchhhcCC
Confidence 99999999999999995 679999999999 99999999999999999999 99999999887663111 1123345799
Q ss_pred HHHHHHHhcCC
Q 011206 456 DECFCQKWAGT 466 (491)
Q Consensus 456 dk~F~~~~~~~ 466 (491)
|++|+++|.+.
T Consensus 332 ~~~F~~~~~~~ 342 (343)
T 3mva_O 332 KKRYEAKLKKL 342 (343)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcc
Confidence 99999999764
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=8.9e-46 Score=368.08 Aligned_cols=258 Identities=22% Similarity=0.416 Sum_probs=227.1
Q ss_pred HHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHH
Q 011206 214 ARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYL 293 (491)
Q Consensus 214 l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L 293 (491)
-.++++||.++|++..+|.+....+|.+|..++++++.|+++||.++|++.++|+++|.++|.+|++++++ ++|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 34788888888888888877666667778888888899999999889999889999999999999888887 88999988
Q ss_pred HHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHH-HHhcC
Q 011206 294 VEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGM 372 (491)
Q Consensus 294 ~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL-~~lG~ 372 (491)
+ ++|++..++.+++.++|++|+.+++ +++++++||++++|++.+++.+++.++|.+++.+. +.++++++++ .++||
T Consensus 84 ~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~ 160 (270)
T 3m66_A 84 H-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGF 160 (270)
T ss_dssp H-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCC
T ss_pred H-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCC
Confidence 6 7899888898998889999988888 48888988866899999999999999999999985 6799999987 58999
Q ss_pred ChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCC--CCC---C
Q 011206 373 RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP--KGP---F 447 (491)
Q Consensus 373 s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~--k~~---~ 447 (491)
+.++|..||.++|++|++| +++|++|++||+++||++.++|+++|.+|+||+| ||+|||+|+++|+..+ +.. +
T Consensus 161 s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~ 238 (270)
T 3m66_A 161 KHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI 238 (270)
T ss_dssp CHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCC
T ss_pred CHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCC
Confidence 9999999999999999999 5899999999999999999999999999999999 9999999999998532 222 4
Q ss_pred Ccccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 011206 448 PLSLF-IPTDECFCQKWAGTTVDKYLAFRQK 477 (491)
Q Consensus 448 ~L~~l-~~sdk~F~~~~~~~s~e~y~~F~~~ 477 (491)
+|+++ .+||++|+++|+++++|+|++|++.
T Consensus 239 ~L~~~l~~sd~~F~~~~~~~~~eey~~f~k~ 269 (270)
T 3m66_A 239 SLDKLVSIPDEIFCEEIAKASVQDFEKFLKT 269 (270)
T ss_dssp CHHHHHHSCHHHHHHHTTCSCHHHHHHHHTT
T ss_pred CHHHHhcCCHHHHHHHHhcCCHHHHHHHHhc
Confidence 55554 6999999999999999999999974
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=312.20 Aligned_cols=225 Identities=21% Similarity=0.331 Sum_probs=190.1
Q ss_pred chHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHH
Q 011206 249 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCI 328 (491)
Q Consensus 249 ~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~ 328 (491)
++...+.+|.++|++..+|+++|..+|.++..+ +.++|.||. .+|++.+.|.++|.++|++|+.+++ ++++++.
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~----l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQ----LLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHH----HHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchhH----HHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 466677778888888888888888888876543 567788885 7888888888888888888888876 5888888
Q ss_pred HHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206 329 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 407 (491)
Q Consensus 329 ~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m 407 (491)
|| +++|++.+++.+++.++|++|+++. +.+..++.+|. ++||+.++|..||.++|+||++| +++|++|++||+++|
T Consensus 119 fL-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 119 YL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRM 195 (335)
T ss_dssp HH-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTT
T ss_pred HH-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHh
Confidence 88 4789998899999999999999985 57888899886 79999999999999999999999 689999999999999
Q ss_pred CCchHHHhhcCcccccCcccchHHHHHHHHHhhcCCCC----C-----CCcccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 011206 408 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG----P-----FPLSLF-IPTDECFCQKWAGTTVDKYLAFRQK 477 (491)
Q Consensus 408 g~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~k~----~-----~~L~~l-~~sdk~F~~~~~~~s~e~y~~F~~~ 477 (491)
|+++.+|++ |.+|+||++ ||+|||.||+.||.++.. . .+|..| ..||+.||.++|++|+++|+.|++
T Consensus 196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k- 272 (335)
T 4fp9_B 196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKK- 272 (335)
T ss_dssp CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHH-
T ss_pred CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHH-
Confidence 999999997 999999998 999999999999975332 1 245555 589999999999999999999986
Q ss_pred HhhHHHHH
Q 011206 478 LLLKDFAK 485 (491)
Q Consensus 478 l~~~~~~~ 485 (491)
++.++..+
T Consensus 273 ~~~~e~~~ 280 (335)
T 4fp9_B 273 LLAREEEE 280 (335)
T ss_dssp HHHHHHHC
T ss_pred HHHhhhhc
Confidence 66666544
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.6e-34 Score=292.70 Aligned_cols=253 Identities=21% Similarity=0.333 Sum_probs=226.0
Q ss_pred CChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHH
Q 011206 177 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF 256 (491)
Q Consensus 177 ~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~f 256 (491)
.+...+++||.++|++.+++ ++++|.++..+++++.++++||+++|++.++|++++.++|.+|.+++ +++.|+++|
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f 92 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL 92 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence 45678999999999997765 56789888888899999999999999999999999999999999997 689999999
Q ss_pred HHHcCCCchhhhhhhhhcccc-cccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcC
Q 011206 257 LISLGIPNSKIGQIIAATPSL-FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 335 (491)
Q Consensus 257 L~~lGls~~~I~kll~~~P~l-L~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG 335 (491)
|+++|+++++|+++|.++|++ ++.+.++++.|++.||+ ++|++.+++.+++.++|++|+.+++.. ++++.+|. ++|
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~-~lg 169 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQ-AAG 169 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHH-HHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHH-HhC
Confidence 999999999999999999994 55554447999999997 899999999999999999999999864 88999994 666
Q ss_pred CC------hhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhcc-chhccCccccHHHHHHHHHH--
Q 011206 336 AP------RDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLT-QVLSLSLEDNLKPKYTYLIN-- 405 (491)
Q Consensus 336 ~s------~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P-~iL~~Sle~~L~pk~~fL~~-- 405 (491)
++ .+.+.+|+.++|.+|+.+ +++++++++||+ .+|++.+++..+|.+.| .+++++ .+.+++++.|+.+
T Consensus 170 v~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~ 247 (343)
T 3mva_O 170 LSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKL 247 (343)
T ss_dssp HHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHH
Confidence 53 678999999999999999 899999999999 59999999999999865 799999 5789999999998
Q ss_pred -HhCCchH----HHhhcCcccccCcccchHHHHHHHHHh
Q 011206 406 -ELHNEVQ----SLTKYPMYLSLSLDQRIRPRHRFLVSL 439 (491)
Q Consensus 406 -~mg~~~~----~I~k~P~lLs~SLekrI~PR~~fL~~L 439 (491)
.+|++.+ .+.++|.+|++|.++ |+++++||..+
T Consensus 248 ~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~m 285 (343)
T 3mva_O 248 FSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLMEE 285 (343)
T ss_dssp HTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHHc
Confidence 6899865 569999999999985 99999999983
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=3.6e-34 Score=284.46 Aligned_cols=217 Identities=21% Similarity=0.347 Sum_probs=203.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHH
Q 011206 181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS 259 (491)
Q Consensus 181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~ 259 (491)
++++||.++|++.++|.+....+|.+|.++++ ++.++++||.++|++.++|++++.++|.+|.+++++ ++|+++||++
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~ 85 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHS 85 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHH
Confidence 78999999999999998877777777999986 799999999999999999999999999999999976 9999999999
Q ss_pred cCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChh
Q 011206 260 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 339 (491)
Q Consensus 260 lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ 339 (491)
+|++.++|++++.++|++|++++++ ++++++||++++|++.+++.+++.++|.+++.+++ .++++++++.+++|++.+
T Consensus 86 ~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ 163 (270)
T 3m66_A 86 KNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHN 163 (270)
T ss_dssp TTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHH
T ss_pred cCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999995 99999999768999999999999999999999988 588999987679999999
Q ss_pred hHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 340 DVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 340 ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
++..|+.++|++|+++. ++++++++||. +||++.++| .++|++|++|++ +|+||+.||..-
T Consensus 164 ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L 225 (270)
T 3m66_A 164 EIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL 225 (270)
T ss_dssp HHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence 99999999999999995 89999999996 799999875 699999999997 999999999874
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=228.54 Aligned_cols=182 Identities=19% Similarity=0.346 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHH
Q 011206 213 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 292 (491)
Q Consensus 213 ~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~ 292 (491)
.++..+.+|.++||++.+|++++..+|.++. .++.+++.||..+|++.++|.++|.++|.+|++++++ |++++.|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHH
Confidence 4667778888888888888888888888863 3466778888888888888888888888888888864 8888888
Q ss_pred HHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-Hhc
Q 011206 293 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIG 371 (491)
Q Consensus 293 L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG 371 (491)
|+ .+|++...+.+++.++|++|+.+.+ .+..++.+|..++||+.+++..||.++|+||+++ .+.|++|++||. +||
T Consensus 120 L~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mg 196 (335)
T 4fp9_B 120 LQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMG 196 (335)
T ss_dssp HH-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTC
T ss_pred HH-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhC
Confidence 86 6888888888888888888888877 4777788887799999999999999999999999 578999999998 799
Q ss_pred CChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 011206 372 MRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 409 (491)
Q Consensus 372 ~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~ 409 (491)
++.++|. + |++|++|++ +|+||+.||.. +|.
T Consensus 197 l~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 197 IKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp CCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred CCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 9999974 3 999999995 99999999987 443
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.51 E-value=8.9e-13 Score=117.27 Aligned_cols=183 Identities=25% Similarity=0.407 Sum_probs=136.0
Q ss_pred HhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCCh
Q 011206 296 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRN 374 (491)
Q Consensus 296 ~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~ 374 (491)
-+|+.++-++-++...|++|...+- .++.+-.+| ..+|+.+..+.+++--+|.+++.. ...+...+..|+ +.=|+.
T Consensus 42 llglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftv 118 (239)
T 4fzv_B 42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTV 118 (239)
T ss_dssp HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCH
T ss_pred hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhH
Confidence 4666666666666666766665553 345555566 366777766666666667776665 455666677776 466777
Q ss_pred HHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCC----CC----C
Q 011206 375 SDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP----KG----P 446 (491)
Q Consensus 375 eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~----k~----~ 446 (491)
+++-+++..||.+|.-++ ..+.-|+.|-.-.||+..-+|++ ..+|.||+. .|+.||-+|..|++.+ +| |
T Consensus 119 qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqip 195 (239)
T 4fzv_B 119 QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP 195 (239)
T ss_dssp HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSC
T ss_pred HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCC
Confidence 788888888888888876 67999999988899999888888 678999997 7999999999998743 22 2
Q ss_pred CCc-cc-cccCHHHHHHHhcCCChHHHHHHHHHHhhHHHHH
Q 011206 447 FPL-SL-FIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAK 485 (491)
Q Consensus 447 ~~L-~~-l~~sdk~F~~~~~~~s~e~y~~F~~~l~~~~~~~ 485 (491)
-++ .. +..|+.+|+++-+.+++|+|+.|++ +++.+..|
T Consensus 196 npllkdilrvseaeflartactsveefqvfkk-llareeee 235 (239)
T 4fzv_B 196 NPLLKDILRVSEAEFLARTACTSVEEFQVFKK-LLAREEEE 235 (239)
T ss_dssp CCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHH-HHHHHHHH
T ss_pred ChHHHHHHHHhHHHHHHHHhcccHHHHHHHHH-HHhhhhhh
Confidence 233 44 4699999999999999999999996 66665544
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.55 E-value=4.9e-07 Score=80.52 Aligned_cols=145 Identities=21% Similarity=0.398 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHH
Q 011206 252 SHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS 331 (491)
Q Consensus 252 p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~ 331 (491)
..+.-+.-+|++++-+.-++.+.|.++...+. .++.+-.||+ .+|+.+..+.+++-.||.+++++.. .+...+..|.
T Consensus 35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvrllk 111 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLK 111 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHH
Confidence 34445556788888888888888888888776 3778888885 7888888888888888888888765 4777788887
Q ss_pred hhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 332 KELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 332 ~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
+.+-|+..++.+++..+|.+|.... ..++-|+.|-- +||+...+|.+ ...|.+|+ .+|+.++-||..-
T Consensus 112 ekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiylerl 180 (239)
T 4fzv_B 112 EKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLERL 180 (239)
T ss_dssp HHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHHH
T ss_pred HhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHHh
Confidence 7888999999999999999999885 57888988875 89999988732 46889997 7899999999863
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=91.86 E-value=0.034 Score=56.07 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.3
Q ss_pred eEEEeeccc
Q 011206 32 FVVLSTHSN 40 (491)
Q Consensus 32 ~~~~~~~~~ 40 (491)
...+.+..|
T Consensus 305 L~~L~l~~N 313 (386)
T 2ca6_A 305 LLFLELNGN 313 (386)
T ss_dssp CCEEECTTS
T ss_pred ceEEEccCC
Confidence 344555544
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.09 E-value=9.9 Score=32.34 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=66.2
Q ss_pred hHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH------HCCCChhhHHHHHhhCCcccccccccchHHHH
Q 011206 181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL------SVGVKQRDVRRILLRQPQILEYTVENNLESHV 254 (491)
Q Consensus 181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~------slGls~~~l~kli~~~P~iL~~s~e~~L~p~v 254 (491)
..++-|.++||+...+.+.+... ..+++..++||. ..|++..++...+..+..--... ..-...+
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~-------g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~v 80 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAA-------GANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQLM 80 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH-------CcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHHH
Confidence 56888999999999999887653 126777777775 35778888877776432110000 1122356
Q ss_pred HHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhC
Q 011206 255 AFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 298 (491)
Q Consensus 255 ~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lG 298 (491)
.-|.++||+.+.+.+.|..+- +++...++||....|
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHhcc
Confidence 777888999988888886642 246677888864433
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=82.97 E-value=10 Score=32.32 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHH-----hhcCCChhhHHHhhhccccccccccccchH
Q 011206 287 KPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS-----KELGAPRDDVVKMVTKHPQLLHYSIDDGLL 361 (491)
Q Consensus 287 ~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~-----~~LG~s~~ev~~ml~~~P~lL~~sie~~L~ 361 (491)
+..|..|. ++||+...+.+.+..+- . ..+..++||. ...|++...+-..+..+..--.. ...-.
T Consensus 9 ~~~v~~l~-~MGFp~~~~~kAl~~~g----~----~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~ 77 (118)
T 4ae4_A 9 RQCVETVV-NMGYSYECVLRAMKAAG----A----NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFL 77 (118)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHC----S----CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHC----c----CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCH
Confidence 34677775 78888888888776532 1 2344455554 24567766555444332110000 01133
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206 362 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 407 (491)
Q Consensus 362 ~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m 407 (491)
+.+.-|.+|||+.+.+.++++.+ .+.+..-+++|....
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhc
Confidence 56888889999999999988876 567777788777643
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=82.42 E-value=1.5 Score=44.70 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.2
Q ss_pred CccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCc
Q 011206 210 NVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 264 (491)
Q Consensus 210 ~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~ 264 (491)
........++.|..+||+..++.+.+.. .. +|+...++||-+ |++.
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a-------~~-nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRA-------SY-NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHH-------SC-SSTTHHHHTTTT-SSTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHH-------cC-CCHHHHHHHHHh-CCCc
Confidence 3457889999999999999999988764 22 578888999953 5654
No 13
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=75.71 E-value=1.6 Score=44.58 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=31.8
Q ss_pred CChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCC
Q 011206 177 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK 227 (491)
Q Consensus 177 ~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls 227 (491)
......|+-|.++||++.++.+.++.. ..++...++||.+ |+.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~-------~nn~~~A~e~L~~-gip 208 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRAS-------YNNPHRAVEYLLT-GIP 208 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHS-------CSSTTHHHHTTTT-SST
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHh-CCC
Confidence 445678999999999999999988752 2356677788853 443
No 14
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=75.47 E-value=3.5 Score=30.35 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=26.9
Q ss_pred ccccccccccccchHHHHHHHHHhcCChHHHHHHHHh
Q 011206 347 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRS 383 (491)
Q Consensus 347 ~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~r 383 (491)
..|.+-. ..+..|++||++-|++.+||..++.+
T Consensus 21 ~dp~V~~----sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQ----SPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhc----CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3677654 34789999999999999999988876
No 15
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=68.22 E-value=1.3 Score=40.80 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=33.1
Q ss_pred cCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHC--CCChhhHHHHH
Q 011206 176 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSV--GVKQRDVRRIL 235 (491)
Q Consensus 176 e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~sl--Gls~~~l~kli 235 (491)
++....+++.|..+|+++..++.|+.-+| .++.+.-.++-++ -++..++..|+
T Consensus 123 ~Esa~elre~L~~~kL~efE~aqLaNL~P-------eTadEaraLIpSle~rlsdEeLeeIL 177 (187)
T 1y14_A 123 QETVGAVIQLLKSTGLHPFEVAQLGSLAC-------DTADEAKTLIPSLNNKISDDELERIL 177 (187)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHSCC-------SSHHHHHHHSGGGTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHcCcCCC-------CCHHHHHHHHHhhccCCCHHHHHHHH
Confidence 45566778888889999999998876444 3444433333333 24566665554
No 16
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=67.27 E-value=1.1 Score=49.67 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCc
Q 011206 396 LKPKYTYLINELHNE 410 (491)
Q Consensus 396 L~pk~~fL~~~mg~~ 410 (491)
|..=+-||+|..|++
T Consensus 896 IVEFYIyLVN~e~~d 910 (956)
T 4aco_A 896 IVEFYIYLVNHESLD 910 (956)
T ss_dssp ---------------
T ss_pred eEEEEEEEecccchh
Confidence 444445555554444
No 17
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=66.05 E-value=6.3 Score=28.97 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCChhhHHHHHhh
Q 011206 214 ARERLEYLLSVGVKQRDVRRILLR 237 (491)
Q Consensus 214 l~~~l~fL~slGls~~~l~kli~~ 237 (491)
+..+++||++.|++.++|...+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 556666666666666666655543
No 18
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=64.91 E-value=7.7 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=27.7
Q ss_pred ccccccccccccchHHHHHHHHHhcCChHHHHHHHHhc
Q 011206 347 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 347 ~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~r~ 384 (491)
.+|.|-.. .+..|+.||++-|++.+||..++.+.
T Consensus 26 qdp~V~~s----p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQS----PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhC----CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 46776543 47899999999999999999988874
No 19
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=63.50 E-value=34 Score=37.74 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=27.9
Q ss_pred HHHHHh-cCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH-HCCCChhhHHHHHhhCC
Q 011206 182 LLDYLS-TFGLKESHFIQMYERHMPSLQINVCSARERLEYLL-SVGVKQRDVRRILLRQP 239 (491)
Q Consensus 182 vl~fL~-slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~-slGls~~~l~kli~~~P 239 (491)
++..|. .+||++.++..|-+.+-. - --.+.+...+--|. ..|+++.++..|-..+-
T Consensus 279 llp~L~~~~gls~~qvvaIAsn~GG-k-QALetV~~llp~L~~~~gltp~qvVaIAsn~G 336 (1047)
T 3ugm_A 279 LLPVLCQAHGLTPDQVVAIASHGGG-K-QALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336 (1047)
T ss_dssp HSHHHHHHHCCCHHHHHHHHSSTTH-H-HHHHHHHHHHHHHHHHTCCCHHHHHHHHSSSS
T ss_pred HhhhhhccccCCHHHHHHHHhcCch-H-HHHHHHHHHHHHHHhhcCCCHHHheeecccCc
Confidence 333444 388888888887753200 0 00122222232333 36677777666665543
No 20
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=62.49 E-value=13 Score=40.85 Aligned_cols=81 Identities=11% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCCChhhHHHHHhhCCcccccccccchHHHHHHHH-HcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChh
Q 011206 224 VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI-SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEK 302 (491)
Q Consensus 224 lGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~-~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~ 302 (491)
.|++.+++.+|-..+-.-= -+ +.+...+-.|. ..|++.++|..|-..+-.-- -++ .+...+-.|.+..|+++.
T Consensus 253 ~gls~~qvVaIAsn~GGkQ--AL-eaV~~llp~L~~~~gls~~qvvaIAsn~GGkQ--ALe-tV~~llp~L~~~~gltp~ 326 (1047)
T 3ugm_A 253 HGLPPDQVVAIASNIGGKQ--AL-ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ--ALE-TVQRLLPVLCQAHGLTPD 326 (1047)
T ss_dssp SCCCHHHHHHHHSSTTHHH--HH-HHHHHHSHHHHHHHCCCHHHHHHHHSSTTHHH--HHH-HHHHHHHHHHHHTCCCHH
T ss_pred cCCCHHHHHHHHhcCcchH--HH-HHHHHHhhhhhccccCCHHHHHHHHhcCchHH--HHH-HHHHHHHHHHhhcCCCHH
Confidence 6777777777665332100 00 11222222333 36777777776654332111 111 133333344445677777
Q ss_pred hHHHHHhh
Q 011206 303 SLGKVVQL 310 (491)
Q Consensus 303 ~l~kll~~ 310 (491)
++..+-..
T Consensus 327 qvVaIAsn 334 (1047)
T 3ugm_A 327 QVVAIASH 334 (1047)
T ss_dssp HHHHHHSS
T ss_pred Hheeeccc
Confidence 66665543
No 21
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=60.78 E-value=3.5 Score=38.75 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=35.7
Q ss_pred cCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCC--CChhhHHHHH
Q 011206 176 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVG--VKQRDVRRIL 235 (491)
Q Consensus 176 e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slG--ls~~~l~kli 235 (491)
++....+-++|...|+.+-+++.|..-+ |+++.+.-.++-++. ++..+|..|+
T Consensus 157 ~EAv~aVrELL~~~gLheFEiAqLANLc-------PeTaDEARALIPSL~~k~sDEeLqeIL 211 (221)
T 3hou_D 157 QETVGAVIQLLKSTGLHPFEVAQLGSLA-------CDTADEAKTLIPSLNNKISDDELERIL 211 (221)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHSC-------CCSHHHHHHHCTTCTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHhheecccC-------CCCHHHHHHHHHhhcccCCHHHHHHHH
Confidence 3444456677788999999999887644 355666666666654 5666666654
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.84 E-value=15 Score=26.09 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 011206 360 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 405 (491)
Q Consensus 360 L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~ 405 (491)
...++.-|.+|||+.+++..++..+ ...+..-++||..
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4567777888888888877777654 2345556666654
No 23
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=59.79 E-value=32 Score=35.01 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHhcCCCCHHHHHHHHHhcCC
Q 011206 185 YLSTFGLKESHFIQMYERHMP 205 (491)
Q Consensus 185 fL~slG~s~~~I~~il~r~P~ 205 (491)
-|..+||++++|..|- ++|.
T Consensus 35 ~l~~~g~t~~~i~~is-~~~~ 54 (463)
T 4hpz_A 35 ALVGHGFTHAHIVALS-QHPA 54 (463)
T ss_dssp HHHHTTCCHHHHHHHT-TSTH
T ss_pred HHHhcCCCHHHHHHhh-ccHh
Confidence 4566888888888854 3444
No 24
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=57.70 E-value=95 Score=31.91 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH-CCCChhhHHHHHhhCC--cccccccccchHHHHHHHH-HcCCCc
Q 011206 189 FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQP--QILEYTVENNLESHVAFLI-SLGIPN 264 (491)
Q Consensus 189 lG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s-lGls~~~l~kli~~~P--~iL~~s~e~~L~p~v~fL~-~lGls~ 264 (491)
+||++.++..|-+.+-. - --.+.+...+..|.. .|++..++..|-+..- +-| +.+...+--|. ..|++.
T Consensus 99 ~gLs~~qVVaIAsn~GG-k-qALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GGkQAL-----eaV~~llpvL~~a~gls~ 171 (499)
T 3v6t_A 99 HGLTPQQVVAIASHDGG-K-QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-----ETVQALLPVLCQAHGLTP 171 (499)
T ss_dssp SCCCHHHHHHHHSSTTH-H-HHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHHH-----HHHHHHHHHHHHTSCCCH
T ss_pred cCCCHHHhhhhhhcCcc-H-HHHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCcHHHH-----HHHHHhhHHHHHhcCCCH
Confidence 88888888776543100 0 001234444455554 7888888887754321 111 12233333344 368888
Q ss_pred hhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHh
Q 011206 265 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 309 (491)
Q Consensus 265 ~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~ 309 (491)
++|..+-...-.-- -++ .+..-.-.|++..|++..+|..|-.
T Consensus 172 ~qVvaIAsN~GGkQ--ALe-aV~~llpvl~~~~gls~~qVVaiAs 213 (499)
T 3v6t_A 172 EQVVAIASNGGGKQ--ALE-TVQRLLPVLCQAHGLTPQQVVAIAS 213 (499)
T ss_dssp HHHHHHHSSTTHHH--HHH-HHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred HHHHHHhcccchHH--HHH-HHHHhhhhHHhhccCCHHHHHHHhh
Confidence 88777643321000 011 1333334444457777777766554
No 25
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.57 E-value=20 Score=28.66 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 011206 360 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 408 (491)
Q Consensus 360 L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg 408 (491)
-..+|+-|..|||+.+++.++++.+ ...+..-++||....+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 3678889999999999988887765 3568888899988766
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=55.84 E-value=17 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHhcC-ChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 011206 358 DGLLPRINFLRSIGM-RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 405 (491)
Q Consensus 358 ~~L~~kvefL~~lG~-s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~ 405 (491)
.....+++-|.+||| +.+.+..++..+ ...+..-+++|..
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 445666777777777 555555554443 2345555555543
No 27
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=53.85 E-value=21 Score=24.29 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc
Q 011206 362 PRINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 362 ~kvefL~~lG~s~eei~~ml~r~ 384 (491)
.+++-|.+|||+.+++.+++..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45677777888777776666554
No 28
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.48 E-value=23 Score=26.62 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 407 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m 407 (491)
...|+-|..|||+.+++.++++.. ..+|..-.++|...+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 556888889999999988888876 567777777776654
No 29
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.96 E-value=22 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206 360 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 407 (491)
Q Consensus 360 L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m 407 (491)
-..++.-|.+|||+.+++.+++..+ ...+..-++||...+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRAT--------NNSLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHT--------TSCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 3567778888888888887777765 234667777877654
No 30
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.72 E-value=16 Score=28.39 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 011206 358 DGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 405 (491)
Q Consensus 358 ~~L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~ 405 (491)
.....+|+-|.+|||+.+++..++..+ ...+..-++||..
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 346778888888888888888877764 3456677777765
No 31
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.05 E-value=24 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
..+|+-|.+|||+.+++.+++..+ ..++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 456777888888888877776654 34577777777764
No 32
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=51.80 E-value=3.1 Score=46.32 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCCC
Q 011206 46 TNRKSRYGQTLSLYD 60 (491)
Q Consensus 46 ~~~~~~~~~~~~~~~ 60 (491)
|.|+-+++....+-|
T Consensus 664 ~~~~~kr~ks~~lld 678 (956)
T 4aco_A 664 TSRRTKRPKQIRLLS 678 (956)
T ss_dssp ---------------
T ss_pred cccccccccCCCccc
Confidence 344444433333333
No 33
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=49.65 E-value=27 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHHhcC-ChHHHHHHHHh
Q 011206 357 DDGLLPRINFLRSIGM-RNSDILKVLRS 383 (491)
Q Consensus 357 e~~L~~kvefL~~lG~-s~eei~~ml~r 383 (491)
+.....+++-|.+||| +.+.+.+++..
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456677777778888 65555555544
No 34
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=49.43 E-value=14 Score=32.68 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=38.1
Q ss_pred cCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCC
Q 011206 203 HMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP 263 (491)
Q Consensus 203 ~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls 263 (491)
.|.++..+++.+++.+--|..-|+++++|+-++...-.|-....- .=.....+|++-|+.
T Consensus 24 ~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v-tG~kI~rILk~~gla 83 (153)
T 2xzm_O 24 SPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFL-TGQKILRILKKNGCA 83 (153)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHH-HSSCHHHHHHHTTCC
T ss_pred CCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeee-ccchHHHHHHHcCCC
Confidence 577777788888888888888888888888888765333221110 011123566666654
No 35
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=48.52 E-value=27 Score=26.97 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
..+++-|.+|||+.+++.++++.+ ..++..-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 567888888888888887777664 34566777777654
No 36
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=47.90 E-value=71 Score=32.56 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=49.6
Q ss_pred HhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHH--cCCC
Q 011206 186 LSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS--LGIP 263 (491)
Q Consensus 186 L~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~--lGls 263 (491)
|+.+|.|..++.+|-. .. ...+...-+-|...||+..+|..|- ++|+-|. .+..++.-|.. -+++
T Consensus 8 l~~lgys~~q~~k~k~---~~----~s~va~~h~~l~~~g~t~~~i~~is-~~~~al~-----~va~~y~~l~aal~~lt 74 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIKP---KV----RSTVAQHHEALVGHGFTHAHIVALS-QHPAALG-----TVAVKYQDMIAALPEAT 74 (463)
T ss_dssp GGGGTCCHHHHHHHCG---GG----HHHHHHHHHHHHHTTCCHHHHHHHT-TSTHHHH-----HHHTTHHHHHHHSTTCC
T ss_pred HHHhccCHHHHHHhhH---HH----HHHHHHHHHHHHhcCCCHHHHHHhh-ccHhHHH-----HHHHhhHHHHhhccccC
Confidence 5779999999998742 22 2356667788889999999999764 5566442 22222222321 3677
Q ss_pred chhhhhhhhhcc
Q 011206 264 NSKIGQIIAATP 275 (491)
Q Consensus 264 ~~~I~kll~~~P 275 (491)
.++|..+-..+.
T Consensus 75 ~~~iV~ia~~~~ 86 (463)
T 4hpz_A 75 HEAIVGVGKQWS 86 (463)
T ss_dssp HHHHHHHHTSTT
T ss_pred HHHHHHHHhccc
Confidence 777776655544
No 37
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=47.78 E-value=17 Score=28.06 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHCCCChhhHHHHHhhC
Q 011206 213 SARERLEYLLSVGVKQRDVRRILLRQ 238 (491)
Q Consensus 213 ~l~~~l~fL~slGls~~~l~kli~~~ 238 (491)
.+..+++||++.|++.++|...+.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 48899999999999999999888773
No 38
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=45.97 E-value=13 Score=32.91 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=26.9
Q ss_pred cCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhC
Q 011206 203 HMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQ 238 (491)
Q Consensus 203 ~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~ 238 (491)
.|.++.++++.+++.+--|..-|+++++|+-++...
T Consensus 22 ~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 22 APAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 466777777777777777777888888887777654
No 39
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=45.59 E-value=99 Score=31.78 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH-CCCChhhHHHHHhhCCc--ccccccccchHHHHHHHHH-cCCCc
Q 011206 189 FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQPQ--ILEYTVENNLESHVAFLIS-LGIPN 264 (491)
Q Consensus 189 lG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s-lGls~~~l~kli~~~P~--iL~~s~e~~L~p~v~fL~~-lGls~ 264 (491)
++|++.+|..|...+-.- --.+.+...+--|.. +|+++.++..|-+.+-. -| +.+...+-.|.. .|++.
T Consensus 65 l~ls~~qvvaIA~n~GGk--qAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GGkqAL-----e~V~~~lpvL~~~~~Ls~ 137 (499)
T 3v6t_A 65 LNLTPEQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL-----ETVQRLLPVLCQAHGLTP 137 (499)
T ss_dssp TCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHH-----HHHHHHHHHHHHTSCCCH
T ss_pred cCCCHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCccHHHH-----HHHHHhhHHhhhhcCCCH
Confidence 899999999987542100 001234444455555 89999999988765421 12 234444445554 79999
Q ss_pred hhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHh
Q 011206 265 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKM 344 (491)
Q Consensus 265 ~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~m 344 (491)
++|..+-...-.- .-++ .+..-+-.|+...|++..+|..+-...-.-= -. +.++.-+-.|...+||+.++|..|
T Consensus 138 ~qVVaIAsn~GGk--QALe-aV~~llpvL~~a~gls~~qVvaIAsN~GGkQ--AL-eaV~~llpvl~~~~gls~~qVVai 211 (499)
T 3v6t_A 138 EQVVAIASHDGGK--QALE-TVQALLPVLCQAHGLTPEQVVAIASNGGGKQ--AL-ETVQRLLPVLCQAHGLTPQQVVAI 211 (499)
T ss_dssp HHHHHHHSSTTHH--HHHH-HHHHHHHHHHHTSCCCHHHHHHHHSSTTHHH--HH-HHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHhHHHhhcCCcH--HHHH-HHHHhhHHHHHhcCCCHHHHHHHhcccchHH--HH-HHHHHhhhhHHhhccCCHHHHHHH
Confidence 9998875332100 0112 2344444555458999998887765321000 00 122333334444477777777655
Q ss_pred hh
Q 011206 345 VT 346 (491)
Q Consensus 345 l~ 346 (491)
-.
T Consensus 212 As 213 (499)
T 3v6t_A 212 AS 213 (499)
T ss_dssp HS
T ss_pred hh
Confidence 43
No 40
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=44.21 E-value=42 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~ 384 (491)
..+++-|.+|||+.+++..++..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456677777777777766655543
No 41
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=43.73 E-value=39 Score=24.24 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.6
Q ss_pred CChHhHHHHHhcCCC-CHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCC
Q 011206 177 EKWLPLLDYLSTFGL-KESHFIQMYERHMPSLQINVCSARERLEYLLSVGV 226 (491)
Q Consensus 177 ~~~~~vl~fL~slG~-s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGl 226 (491)
......++-|.++|| +...+.+.+... -.+++..+++|.+.+.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHHcCC
Confidence 345567888999999 677666665432 2368888888877653
No 42
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.21 E-value=46 Score=25.71 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccc-cHHHHHHHHHHHhC
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED-NLKPKYTYLINELH 408 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~-~L~pk~~fL~~~mg 408 (491)
...++-|.+|||+.+.+.+++..+ .. .+..-++||...+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t--------~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYT--------GNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHH--------TSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCCHHHHHHHHHhCCC
Confidence 457778888999988888777664 22 47788888888654
No 43
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.92 E-value=44 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 408 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg 408 (491)
...++-|.+|||+.+.+.+++..+ ...+..-++||.+.+.
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCC
Confidence 457788888999998887777654 2457777888887654
No 44
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=41.19 E-value=6.8 Score=36.23 Aligned_cols=15 Identities=0% Similarity=-0.252 Sum_probs=3.7
Q ss_pred cCCccccCCCCCCCC
Q 011206 45 KTNRKSRYGQTLSLY 59 (491)
Q Consensus 45 ~~~~~~~~~~~~~~~ 59 (491)
.+|.+...|.+.-.|
T Consensus 250 ~~~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 250 PEPEDGGDKLSPCSS 264 (282)
T ss_dssp CCCCCC---------
T ss_pred CcCcCCCcccccccc
Confidence 366666667433333
No 45
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.03 E-value=50 Score=23.89 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHhcCChHH-HHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 358 DGLLPRINFLRSIGMRNSD-ILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 358 ~~L~~kvefL~~lG~s~ee-i~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
.....+++-|++|||+.++ ..+++... ...+..-+++|...
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQS 48 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 3456777888888886654 34444433 34566666666653
No 46
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=37.30 E-value=50 Score=24.32 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=24.2
Q ss_pred ccchHHHHHHHHHhcCC-hHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 011206 357 DDGLLPRINFLRSIGMR-NSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 405 (491)
Q Consensus 357 e~~L~~kvefL~~lG~s-~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~ 405 (491)
+..+..+++-|.+|||+ .+.+.+++... ...+..-+++|..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~--------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 45567778888888875 33434444433 3456666666654
No 47
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=37.30 E-value=33 Score=24.21 Aligned_cols=25 Identities=36% Similarity=0.291 Sum_probs=20.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHh
Q 011206 359 GLLPRINFLRSIGMRNSDILKVLRS 383 (491)
Q Consensus 359 ~L~~kvefL~~lG~s~eei~~ml~r 383 (491)
.|...+..|.++||+.+++.+.+..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677889999999999998877644
No 48
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=35.91 E-value=30 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=20.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhc
Q 011206 359 GLLPRINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 359 ~L~~kvefL~~lG~s~eei~~ml~r~ 384 (491)
.+...|+-|.+|||+.+++.+++...
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45578999999999999998877654
No 49
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.24 E-value=40 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccc-cHHHHHHHHHHH
Q 011206 362 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLED-NLKPKYTYLINE 406 (491)
Q Consensus 362 ~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~-~L~pk~~fL~~~ 406 (491)
..|+-|.+|||+.+++.+++..+ .. .+..-+++|.+.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t--------~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALAST--------GGRSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHT--------TTSCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCCHHHHHHHHHhC
Confidence 35667777888887777666553 22 566666666654
No 50
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=34.39 E-value=9.1 Score=38.82 Aligned_cols=12 Identities=0% Similarity=0.008 Sum_probs=5.2
Q ss_pred HHHHHHHHHHCC
Q 011206 214 ARERLEYLLSVG 225 (491)
Q Consensus 214 l~~~l~fL~slG 225 (491)
+...+..++.++
T Consensus 274 LD~L~~~~~~i~ 285 (360)
T 3ay5_A 274 LDDIVDISDEIS 285 (360)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 334444444444
No 51
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.37 E-value=32 Score=23.89 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 404 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~ 404 (491)
..++.-|.+|||+.+.+.+++..+ + .+..-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~-----n~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S-----TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C-----SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C-----CHHHHHHHHH
Confidence 567888999999999988887775 1 3555556654
No 52
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.27 E-value=62 Score=24.21 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 011206 363 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 408 (491)
Q Consensus 363 kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg 408 (491)
.++-|.+|||+.+.+.+++... .+ ..+..-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAAT-----GR--KTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHhCCC
Confidence 4566777888877776666543 11 257777777777653
No 53
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=33.75 E-value=51 Score=28.92 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=2.7
Q ss_pred cccccC
Q 011206 41 AKILKT 46 (491)
Q Consensus 41 ~~~~~~ 46 (491)
+||.+.
T Consensus 86 ~rL~k~ 91 (150)
T 2kmw_A 86 TRLLKS 91 (150)
T ss_dssp SCSBSC
T ss_pred cccccC
Confidence 344443
No 54
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.69 E-value=59 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=26.1
Q ss_pred ccchHHHHHHHHHhcCChHHH-HHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 357 DDGLLPRINFLRSIGMRNSDI-LKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 357 e~~L~~kvefL~~lG~s~eei-~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
+..++..++-|++|||+..+. .+++... ...+..-+++|...
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at--------~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIAT--------DGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 456677788888888765543 4443332 35677777777653
No 55
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.25 E-value=90 Score=22.70 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc
Q 011206 360 LLPRINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 360 L~~kvefL~~lG~s~eei~~ml~r~ 384 (491)
...+|+-|.++||+.+++.+.+...
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4456777778888888777666543
No 56
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=31.35 E-value=73 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHhcCChH-HHHHHHHh
Q 011206 358 DGLLPRINFLRSIGMRNS-DILKVLRS 383 (491)
Q Consensus 358 ~~L~~kvefL~~lG~s~e-ei~~ml~r 383 (491)
+....+++-|.+|||+.. .+.+++..
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~ 31 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRR 31 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 445667777777777543 33444443
No 57
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.71 E-value=78 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=26.2
Q ss_pred ccchHHHHHHHHHhcCC-hHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 011206 357 DDGLLPRINFLRSIGMR-NSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 405 (491)
Q Consensus 357 e~~L~~kvefL~~lG~s-~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~ 405 (491)
+..++.+|+-|++|||+ .+.+.+++... ...+..-++||..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 45667788888888885 45545555443 3456666777665
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=29.86 E-value=44 Score=24.49 Aligned_cols=39 Identities=28% Similarity=0.255 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 011206 359 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 405 (491)
Q Consensus 359 ~L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~ 405 (491)
-....|..|.+|||+.+++.+.+... .+.+.---.+|.+
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia--------~Ndv~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIA--------QNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT--------TTCSHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHh--------cccHHHHHHHHHH
Confidence 45678899999999999988776543 3445554555544
No 59
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.33 E-value=66 Score=25.55 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
.++|+-|..|||+.+.+.+++..+ ...+..-++||...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHC
Confidence 566777777888877776666432 24566677777654
No 60
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=28.58 E-value=1.6e+02 Score=24.58 Aligned_cols=45 Identities=13% Similarity=0.487 Sum_probs=30.9
Q ss_pred cccchhhhhhhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCC
Q 011206 156 VMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMP 205 (491)
Q Consensus 156 l~~~~~~~~~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~ 205 (491)
+.....+...+..+++.++ ..|..+. +.+|++..+|..|-..+|.
T Consensus 17 ~~~~~~t~~~l~~Ia~~LG--~~Wk~LA---R~LGlse~dId~I~~~~p~ 61 (115)
T 2o71_A 17 ILNSSPSDRQINQLAQRLG--PEWEPMV---LSLGLSQTDIYRCKANHPH 61 (115)
T ss_dssp GGGSCCCHHHHHHHHHHCC--TTHHHHH---HHTTCCHHHHHHHHHHCTT
T ss_pred hccCCCCHHHHHHHHHHHh--hhHHHHH---HHcCCCHHHHHHHHHHCCC
Confidence 3444445555666776655 5665444 5679999999999988874
No 61
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=28.46 E-value=8.2 Score=36.22 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=11.7
Q ss_pred HHHHHCCCChhhHHHHHhhCCc
Q 011206 219 EYLLSVGVKQRDVRRILLRQPQ 240 (491)
Q Consensus 219 ~fL~slGls~~~l~kli~~~P~ 240 (491)
++|...|+.+-+++.|..-+|.
T Consensus 165 ELL~~~gLheFEiAqLANLcPe 186 (221)
T 3hou_D 165 QLLKSTGLHPFEVAQLGSLACD 186 (221)
T ss_dssp HHHTTSCCCHHHHHHHHHSCCC
T ss_pred HHHHhcCCChHHhheecccCCC
Confidence 4444455666555555555543
No 62
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=27.94 E-value=1.1e+02 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHHHHHCCCChhhHHHHHh
Q 011206 214 ARERLEYLLSVGVKQRDVRRILL 236 (491)
Q Consensus 214 l~~~l~fL~slGls~~~l~kli~ 236 (491)
+.+.++-|.++|++..++.+.+.
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555666666666666555443
No 63
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.43 E-value=91 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 011206 363 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 408 (491)
Q Consensus 363 kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg 408 (491)
.++-|.+|||+.+.+.+++..+ .+ ..+..-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t-----~~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----cC--CCHHHHHHHHHhCCC
Confidence 5666777788777776666532 11 346667777776543
No 64
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=27.31 E-value=81 Score=23.41 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=24.0
Q ss_pred HHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhh
Q 011206 294 VEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 345 (491)
Q Consensus 294 ~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml 345 (491)
.+.+|++...|.+++...+.-+.-+.+ ...++....+.+|+.++...+.+
T Consensus 7 A~~aGVS~sTVSrvLng~~~~~~vs~e--t~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAKQYRVSDK--TVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTTTTTCTTH--HHHHHHHHHHHHTCCCC------
T ss_pred HHHHCcCHHHHHHHHcCCCCCCCCCHH--HHHHHHHHHHHhCCCccHHHHHH
Confidence 356788888888777765521111222 33344333357777766554433
No 65
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=27.11 E-value=16 Score=36.45 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=5.4
Q ss_pred CceEEEeeccc
Q 011206 30 PRFVVLSTHSN 40 (491)
Q Consensus 30 ~~~~~~~~~~~ 40 (491)
+.++++.+++|
T Consensus 310 P~~~i~~~~~~ 320 (367)
T 3us3_A 310 PQIGVVNVTDA 320 (367)
T ss_dssp CEEEEEETTTC
T ss_pred CeEEEEecccc
Confidence 34555555444
No 66
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=26.99 E-value=13 Score=37.08 Aligned_cols=13 Identities=0% Similarity=-0.038 Sum_probs=6.9
Q ss_pred CceEEEeeccccc
Q 011206 30 PRFVVLSTHSNAK 42 (491)
Q Consensus 30 ~~~~~~~~~~~~~ 42 (491)
-.|+.+-...+++
T Consensus 282 i~F~~id~~~~~~ 294 (367)
T 3us3_A 282 LSIIWIDPDDFPL 294 (367)
T ss_dssp CCEEEECGGGCTT
T ss_pred eEEEEECCccchh
Confidence 4556555555554
No 67
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.94 E-value=1.4e+02 Score=26.64 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=76.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCC-ChhhHHHHHhhCCccc-ccccccchHHHHHHHH
Q 011206 181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGV-KQRDVRRILLRQPQIL-EYTVENNLESHVAFLI 258 (491)
Q Consensus 181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGl-s~~~l~kli~~~P~iL-~~s~e~~L~p~v~fL~ 258 (491)
..+.+|..---|..++.+-+.+. .++.+.+..+|+.|...|+ ++...+..+.+.-.-. .++. . ....-|+
T Consensus 23 ~Al~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~---~I~~eL~ 94 (177)
T 3e3v_A 23 AALNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-K---VIKLNLS 94 (177)
T ss_dssp HHHHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-H---HHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-H---HHHHHHH
Confidence 34667766667777776655432 2455668888899999885 7777776665432211 1332 1 2234678
Q ss_pred HcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCCh
Q 011206 259 SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPR 338 (491)
Q Consensus 259 ~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~ 338 (491)
.-|++.+.|..++...+ .+..+......+.+.+ ...+. .+....-+..+.||. .-||+.
T Consensus 95 ~KGI~~~~I~~al~~~~------~~de~e~a~~l~~Kk~-----------~~~~~---~~~~~~~~K~~~~L~-rrGF~~ 153 (177)
T 3e3v_A 95 KKGIDDNIAEDALILYT------DKLQVEKGVTLAEKLA-----------NRYSH---DSYRNKQNKIKQSLL-TKGFSY 153 (177)
T ss_dssp TTTCCHHHHHHHHTTSC------HHHHHHHHHHHHHHHH-----------HHTTT---SCHHHHHHHHHHHHH-HTTCCH
T ss_pred HcCCCHHHHHHHHHhCC------chhHHHHHHHHHHHHH-----------hhccC---CChHHHHHHHHHHHH-HCCCCH
Confidence 88999988888875432 1111222233332211 11111 011111223355775 789999
Q ss_pred hhHHHhhhc
Q 011206 339 DDVVKMVTK 347 (491)
Q Consensus 339 ~ev~~ml~~ 347 (491)
+.+..++..
T Consensus 154 ~~I~~vl~~ 162 (177)
T 3e3v_A 154 DIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888765
No 68
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.56 E-value=1.2e+02 Score=23.93 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 408 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg 408 (491)
...++-|.+|||+.+.+.+++... .+ ..+..-++||...+.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t-----~n--~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT-----SN--AGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-----TT--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----cC--CCHHHHHHHHHhCCC
Confidence 457778888888888877776543 11 357777888887654
No 69
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.43 E-value=1.2e+02 Score=23.28 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=32.0
Q ss_pred cCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH
Q 011206 176 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS 223 (491)
Q Consensus 176 e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s 223 (491)
.......|+-|.++||+..++...++.. -.+++..++||.+
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 3445678999999999999999988753 2368888888875
No 70
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.93 E-value=49 Score=24.65 Aligned_cols=46 Identities=4% Similarity=0.027 Sum_probs=21.3
Q ss_pred cCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHH
Q 011206 188 TFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRR 233 (491)
Q Consensus 188 slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~k 233 (491)
..|++.+.+.+++...+.-...+.++.....+....+|..+....+
T Consensus 9 ~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~ 54 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAA 54 (65)
T ss_dssp HHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC----
T ss_pred HHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 4566666666666544311123344444445555556655554443
No 71
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=23.82 E-value=1.6e+02 Score=23.40 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=29.1
Q ss_pred hHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH-CC
Q 011206 179 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VG 225 (491)
Q Consensus 179 ~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s-lG 225 (491)
+..+-+|-+.+|+++.+|-.|-..||.-+. +...+.|.-|.. .|
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~~---Eq~~qmL~~W~~~~g 56 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDTA---EQKVQLLLCWYQSHG 56 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCCT---THHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCChH---HHHHHHHHHHHHHhC
Confidence 445566778889999998888888775431 445555555553 44
No 72
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=23.18 E-value=1.5e+02 Score=21.00 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=26.6
Q ss_pred cCChHhHHHHHhcCCC-CHHHHHHHHHhcCCccccCccCHHHHHHHHH
Q 011206 176 DEKWLPLLDYLSTFGL-KESHFIQMYERHMPSLQINVCSARERLEYLL 222 (491)
Q Consensus 176 e~~~~~vl~fL~slG~-s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~ 222 (491)
+......++-|.++|| +...+.+.+... ..+++..+++|.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIAT-------GGDINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHH-------TTCHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHH
Confidence 4556678888999999 666666665432 235677777764
No 73
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.10 E-value=56 Score=29.15 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=28.9
Q ss_pred cCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCc
Q 011206 203 HMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQ 240 (491)
Q Consensus 203 ~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~ 240 (491)
.|.++.++++.+++.+--|..-|+++++|+-++.....
T Consensus 22 ~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~g 59 (158)
T 3j20_Q 22 PPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYG 59 (158)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCC
Confidence 56777777778888888888888888888877766533
No 74
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.94 E-value=3e+02 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.487 Sum_probs=30.9
Q ss_pred cccchhhhhhhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCC
Q 011206 156 VMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMP 205 (491)
Q Consensus 156 l~~~~~~~~~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~ 205 (491)
+.....+...+..+++.++ ..|..+ -+.+|++..+|..|-..+|.
T Consensus 17 ~~~~~~t~~~l~~Ia~~lG--~~Wk~L---AR~LGlse~dId~I~~~~p~ 61 (114)
T 2of5_A 17 ILNSSPSDRQINQLAQRLG--PEWEPM---VLSLGLSQTDIYRCKANHPH 61 (114)
T ss_dssp CTTSCCCHHHHHHHHHTCC--STHHHH---HHTTTCCHHHHHHHHHHCSS
T ss_pred hhcCCCCHHHHHHHHHHHh--hhHHHH---HHHcCCCHHHHHHHHHHCCC
Confidence 3444445555666776655 566444 46789999999999988874
No 75
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.39 E-value=1.9e+02 Score=21.03 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=11.8
Q ss_pred ccchHHHHHHHHHhcCChHH
Q 011206 357 DDGLLPRINFLRSIGMRNSD 376 (491)
Q Consensus 357 e~~L~~kvefL~~lG~s~ee 376 (491)
++.-..++.-|.+|||...+
T Consensus 6 ee~~a~~L~~L~eMGF~D~~ 25 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQ 25 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHH
T ss_pred HHhhHHHHHHHHHcCCCcHH
Confidence 34455566677777774443
No 76
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.09 E-value=1.2e+02 Score=25.06 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHh-cCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 358 DGLLPRINFLRSI-GMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 358 ~~L~~kvefL~~l-G~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
..+.++|..|.++ ||+.++++.+|..+ ...+..-+.+|...
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~--------ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDC--------NGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 3467788888887 88888888777665 34566666776653
No 77
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=20.83 E-value=21 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHCCCChhhHHHHHhhCCc
Q 011206 211 VCSARERLEYLLSVGVKQRDVRRILLRQPQ 240 (491)
Q Consensus 211 ~~~l~~~l~fL~slGls~~~l~kli~~~P~ 240 (491)
++.+.+..+.|...|+...+++.|+.-+|.
T Consensus 123 ~Esa~elre~L~~~kL~efE~aqLaNL~Pe 152 (187)
T 1y14_A 123 QETVGAVIQLLKSTGLHPFEVAQLGSLACD 152 (187)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHcCcCCCC
Confidence 344455556777788888888888887775
No 78
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.61 E-value=1.9e+02 Score=21.40 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=26.0
Q ss_pred hHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHC
Q 011206 181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSV 224 (491)
Q Consensus 181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~sl 224 (491)
..|+-|.++||+..++.+.+..+ -.+++..++||.+-
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~-------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN-------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT-------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHHC
Confidence 46788888888888887766542 13577777887653
No 79
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=20.32 E-value=1.6e+02 Score=24.70 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCccccc----------------
Q 011206 181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEY---------------- 244 (491)
Q Consensus 181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~---------------- 244 (491)
..++-|.++||+...+.+.+.. +.-.+++..++||.... ...++ ..|..+..
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~------t~n~~~e~A~~wL~~~~-~d~di-----~epl~~~~~~s~~~~~~~~l~~~~ 72 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYF------TGNMGAEVAFNWIIVHM-EEPDF-----AEPLTMPGYGGAASAGASVFGASG 72 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHH------HTSCCHHHHHHHHHHGG-GCSSS-----SCTTCCSSCCSSSSSCCCCSTTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------cCCCCHHHHHHHHHHhc-ccccc-----cccccccccccccccchhhhcccc
Q ss_pred -ccccchHHHHHHHHHcCCCchhhhhhhhhc
Q 011206 245 -TVENNLESHVAFLISLGIPNSKIGQIIAAT 274 (491)
Q Consensus 245 -s~e~~L~p~v~fL~~lGls~~~I~kll~~~ 274 (491)
.. ..-...+.-|.++|++...+.+.+..+
T Consensus 73 ~~~-~~~e~~v~~L~~MGF~~~~a~~AL~~~ 102 (126)
T 2lbc_A 73 LDN-QPPEEIVAIITSMGFQRNQAIQALRAT 102 (126)
T ss_dssp CCC-CCCHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccc-CcCHHHHHHHHHcCCCHHHHHHHHHHc
No 80
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.26 E-value=3.5e+02 Score=24.77 Aligned_cols=139 Identities=14% Similarity=-0.002 Sum_probs=83.5
Q ss_pred HhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCC-ChhhHHHHHhhCCcc-cccccccchHHHHHHH
Q 011206 180 LPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGV-KQRDVRRILLRQPQI-LEYTVENNLESHVAFL 257 (491)
Q Consensus 180 ~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGl-s~~~l~kli~~~P~i-L~~s~e~~L~p~v~fL 257 (491)
...+.+|..---|..++.+-+.++ .++.+.+..+++.|...|+ ++...+....+.-.- =.++. .....-|
T Consensus 65 ~~Al~~Ls~r~~S~~EL~~KL~~k----g~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~----~~I~~eL 136 (221)
T 3d5l_A 65 SRMLDYLSYQMRTESDIVKKLKEI----DTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGP----GIIRQHL 136 (221)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCH----HHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccH----HHHHHHH
Confidence 346778877788899988877764 2456778999999999985 677777665543211 12222 2234577
Q ss_pred HHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCC
Q 011206 258 ISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAP 337 (491)
Q Consensus 258 ~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s 337 (491)
+.-|++.+.|..++...+ .+.........+. +.....+. .+.....+..+.||. .-||+
T Consensus 137 ~~KGI~~~~I~~al~~~~------~~~e~e~a~~l~~-----------Kk~~~~~~---~~~~~~k~K~~~~L~-rrGFs 195 (221)
T 3d5l_A 137 RQKGIGESDIDDALTQFT------PEVQAELAKKLAL-----------KLFRRYRN---QPERRREQKVQQGLT-TKGFS 195 (221)
T ss_dssp HHTTCCHHHHHHHGGGCC------HHHHHHHHHHHHH-----------HHHHHTTT---SCHHHHHHHHHHHHH-HTTCC
T ss_pred HHcCCCHHHHHHHHHhCC------HHHHHHHHHHHHH-----------HHHhhccC---CChHHHHHHHHHHHH-hCCCC
Confidence 899999988888876542 1111222222222 11111111 111112334467775 78999
Q ss_pred hhhHHHhhhc
Q 011206 338 RDDVVKMVTK 347 (491)
Q Consensus 338 ~~ev~~ml~~ 347 (491)
.+.+..++..
T Consensus 196 ~~~I~~vl~~ 205 (221)
T 3d5l_A 196 SSVYEMIKDE 205 (221)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999888875
Done!