Query 011206
Match_columns 491
No_of_seqs 226 out of 1305
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 03:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011206.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011206hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 62.0 3 0.00022 27.2 3.0 26 359-384 3-28 (41)
2 d1wgna_ a.5.2.1 (A:) Ubiquitin 56.5 8.3 0.00061 27.3 5.0 38 361-406 20-57 (63)
3 d1vg5a_ a.5.2.1 (A:) Rhomboid 55.3 5.7 0.00042 29.0 4.0 38 361-406 30-67 (73)
4 d2g3qa1 a.5.2.1 (A:1339-1381) 52.1 4.5 0.00033 26.5 2.5 22 363-384 7-28 (43)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 50.1 13 0.00094 27.0 5.3 38 361-406 30-67 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 47.7 15 0.0011 25.7 5.2 39 361-407 10-48 (63)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 32.4 47 0.0034 22.6 5.6 46 295-345 8-53 (57)
8 d1whca_ a.5.2.1 (A:) UBA/UBX 3 31.1 32 0.0023 24.1 4.6 39 363-408 12-50 (64)
9 d2hsga1 a.35.1.5 (A:2-58) Gluc 29.9 49 0.0035 22.5 5.4 46 295-345 9-54 (57)
10 d1efaa1 a.35.1.5 (A:2-60) Lac 27.9 37 0.0027 23.4 4.4 47 295-346 10-56 (59)
11 d1rw1a_ c.47.1.12 (A:) Hypothe 26.3 37 0.0027 26.0 4.7 67 180-246 14-93 (114)
12 d2hsga1 a.35.1.5 (A:2-58) Gluc 25.1 46 0.0033 22.6 4.5 47 331-381 8-54 (57)
13 d2crna1 a.5.2.1 (A:8-58) Suppr 24.7 60 0.0043 21.5 4.9 37 364-407 6-42 (51)
14 d2daha1 a.5.2.1 (A:8-48) Ubiqu 23.8 24 0.0017 22.7 2.5 38 360-404 2-39 (41)
15 d1uxda_ a.35.1.5 (A:) Fructose 23.1 30 0.0022 23.8 3.1 46 295-342 8-53 (59)
16 d1efaa1 a.35.1.5 (A:2-60) Lac 22.6 54 0.004 22.4 4.5 49 330-382 8-56 (59)
17 d1qpza1 a.35.1.5 (A:2-58) Puri 22.2 61 0.0045 22.0 4.7 48 331-382 7-54 (57)
18 d2prra1 a.152.1.3 (A:5-194) Un 21.9 64 0.0047 26.5 5.9 167 176-385 16-189 (190)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.99 E-value=3 Score=27.20 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=21.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhc
Q 011206 359 GLLPRINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 359 ~L~~kvefL~~lG~s~eei~~ml~r~ 384 (491)
....+|.-|.+|||+.+++..++..+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46778888999999999988887765
No 2
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.47 E-value=8.3 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
++.|+-|..|||+.+++.+.+..+ ..++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 456778888888888887777665 34677777777654
No 3
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=55.29 E-value=5.7 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
++.|+-|..|||+.+++.+.+..+ ..++..-++||...
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 567778888888888887777665 45677777777653
No 4
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=52.15 E-value=4.5 Score=26.48 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=18.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhc
Q 011206 363 RINFLRSIGMRNSDILKVLRSL 384 (491)
Q Consensus 363 kvefL~~lG~s~eei~~ml~r~ 384 (491)
-|+-|..|||+.++..+++.++
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHc
Confidence 4667788999999999988887
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.10 E-value=13 Score=26.99 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~ 406 (491)
...|.-|.+|||+.+++.+++..+ ..++..-++||...
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 456777778888888877777665 34566677777653
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.66 E-value=15 Score=25.69 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206 361 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 407 (491)
Q Consensus 361 ~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m 407 (491)
...|+-|..|||+...+.+.+..+ ...+..-++||...+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCC
Confidence 456677778888888877776655 345777777777754
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.37 E-value=47 Score=22.59 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhh
Q 011206 295 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 345 (491)
Q Consensus 295 ~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml 345 (491)
+..|++...+.+++...|.+ +. ..+.++....+++|+.++.+.+-|
T Consensus 8 ~~agVS~sTVSr~ln~~~~v---s~--~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 8 KRANVSTTTVSHVINKTRFV---AE--ETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHHTSCHHHHHHHHHTCSCC---CH--HHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHCcCHHHHHHHHCCCCcc---CH--HHHHHHHHHHHHHCCCCCHHHHHH
Confidence 46777777777777765532 11 234444444467777776655444
No 8
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.07 E-value=32 Score=24.05 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=24.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 011206 363 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 408 (491)
Q Consensus 363 kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg 408 (491)
.+.-|.+|||+.+.+.+.+... .+ ..+..-+++|...+.
T Consensus 12 ~l~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~Wl~~h~~ 50 (64)
T d1whca_ 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHHCCC
Confidence 4566667788877776665532 11 247777777777654
No 9
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=29.95 E-value=49 Score=22.50 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=26.2
Q ss_pred HHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhh
Q 011206 295 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 345 (491)
Q Consensus 295 ~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml 345 (491)
+..|++...+.+++...|.+ +. ..+.++.-..++||+.++...+.|
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~--~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KP--STRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CH--HHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHCcCHHHHHHHhCCCCcC---CH--HHHHHHHHHHHHHCcCCCHHHHHh
Confidence 46677777777777765532 22 233444444467777766654444
No 10
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.95 E-value=37 Score=23.38 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhh
Q 011206 295 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVT 346 (491)
Q Consensus 295 ~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~ 346 (491)
+..|++...+.+++...+.+ +.+ ...++....+++|+.++.+.+.|+
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s~~--tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---SAK--TREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---CTH--HHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHCCCHHHHHHHHCCCCcC---CHH--HHHHHHHHHHHHCCCcCHHHHHHh
Confidence 46677777777777655432 221 334444444677777666655443
No 11
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.26 E-value=37 Score=25.98 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HhHHHHHhcCC------------CCHHHHHHHHHhcCCccccCccC-HHHHHHHHHHCCCChhhHHHHHhhCCccccccc
Q 011206 180 LPLLDYLSTFG------------LKESHFIQMYERHMPSLQINVCS-ARERLEYLLSVGVKQRDVRRILLRQPQILEYTV 246 (491)
Q Consensus 180 ~~vl~fL~slG------------~s~~~I~~il~r~P~lL~~~~~~-l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~ 246 (491)
..++++|...| ++..++..++...+.--..+... ....+.......++.+++..++..+|.++.+.+
T Consensus 14 rka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 14 KKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSCE
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhccccHHHHHHHHHhCcceEeCCE
No 12
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=25.07 E-value=46 Score=22.64 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=32.7
Q ss_pred HhhcCCChhhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHH
Q 011206 331 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVL 381 (491)
Q Consensus 331 ~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml 381 (491)
.+..|++...+.++|...|.+ + +++-++-.+...++|+....+.+.+
T Consensus 8 A~~agvS~~TVSr~Ln~~~~V---s-~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPNV---K-PSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTTS---C-HHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHHCcCHHHHHHHhCCCCcC---C-HHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 467899999999999877752 3 3444444455568999877766554
No 13
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.65 E-value=60 Score=21.47 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=20.7
Q ss_pred HHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206 364 INFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 407 (491)
Q Consensus 364 vefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m 407 (491)
++-|.+|||+.....+.+... .+ ..+..-+++|...+
T Consensus 6 v~~L~~MGF~~~~a~~Al~~t-----~n--~~ve~A~~Wl~~h~ 42 (51)
T d2crna1 6 LEPLLAMGFPVHTALKALAAT-----GR--KTAEEALAWLHDHC 42 (51)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----CC--CCHHHHHHHHHHcC
Confidence 344667777777666554321 11 24666666666654
No 14
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.80 E-value=24 Score=22.68 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 011206 360 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 404 (491)
Q Consensus 360 L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~ 404 (491)
.+..++.|++|||+.++.. =..|..+ ...+..-+++|.
T Consensus 2 y~~QL~~L~~MGF~d~~~N------i~AL~~t-~Gdv~~Aie~Ll 39 (41)
T d2daha1 2 FQVQLEQLRSMGFLNREAN------LQALIAT-GGDVDAAVEKLR 39 (41)
T ss_dssp SHHHHHHHHHHTCCCHHHH------HHHHHHH-TSCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHH------HHHHHHc-CCCHHHHHHHHH
Confidence 3567888899999887642 1222222 345555555554
No 15
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.13 E-value=30 Score=23.79 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=27.2
Q ss_pred HHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHH
Q 011206 295 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVV 342 (491)
Q Consensus 295 ~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~ 342 (491)
+..|++...+.+++-..|.-..-+.+ .+.++.-..+++|+.++...
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~--tr~rV~~~a~~lgY~pn~~A 53 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDK--TVEKVMAVVREHNYHPNAVA 53 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTT--THHHHHHHHHHHTCCCCSCC
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHH--HHHHHHHHHHHHCCCcCHHH
Confidence 46788888888888766653222222 33444444467787765543
No 16
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.64 E-value=54 Score=22.43 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=34.3
Q ss_pred HHhhcCCChhhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHH
Q 011206 330 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLR 382 (491)
Q Consensus 330 L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~ 382 (491)
+.+..|++...+-++|...|.+ + +++.+.-.+...++|+..+.+.+.+.
T Consensus 8 iA~~agvS~sTVSr~l~~~~~v---s-~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 8 VAEYAGVSYQTVSRVVNQASHV---S-AKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp HHHTTTSCHHHHHHHHTTCSSC---C-THHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHCCCCcC---C-HHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 3467899999999998776653 3 44444445555689999887766554
No 17
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.17 E-value=61 Score=21.96 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=32.9
Q ss_pred HhhcCCChhhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHH
Q 011206 331 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLR 382 (491)
Q Consensus 331 ~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~ 382 (491)
.+..|++...|-++|...|.+ + +++-++-.+...++|+....+.+-++
T Consensus 7 A~~agVS~sTVSr~ln~~~~v---s-~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRFV---A-EETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSCC---C-HHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCCCCcc---C-HHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 367899999999999877652 3 33444444445689998887766554
No 18
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=21.87 E-value=64 Score=26.50 Aligned_cols=167 Identities=12% Similarity=0.113 Sum_probs=84.4
Q ss_pred cCChHhHHHHH-hcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH-----HCCCChhhHHHHHhhCCcccccccccc
Q 011206 176 DEKWLPLLDYL-STFGLKESHFIQMYERHMPSLQINVCSARERLEYLL-----SVGVKQRDVRRILLRQPQILEYTVENN 249 (491)
Q Consensus 176 e~~~~~vl~fL-~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~-----slGls~~~l~kli~~~P~iL~~s~e~~ 249 (491)
+....++++-+ +.+|+-+ .+.+++..+|.++ ...+.+.. +-+++......++..--.+-++.. .
T Consensus 16 ~~~~~~~~~~~~~~~G~vp-n~~~~la~~P~~l-------~~~~~~~~~~~~~~~~L~~~~~Eli~l~vs~~n~c~Y--C 85 (190)
T d2prra1 16 PDDIRQRILEVQDKAGFVP-NVFLTLAHRPDEF-------RAFFAYHDALMLKDGGLTKGEREMIVVATSAANQCLY--C 85 (190)
T ss_dssp CHHHHHHHHHHHHHHSSCC-HHHHHHTTSHHHH-------HHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHTTCHH--H
T ss_pred CHHHHHHHHHHHHHhCCCH-HHHHHHHhCHHHH-------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHhCCch--H
Confidence 34555666655 4577755 4455555555433 33333322 224676555544444334444444 4
Q ss_pred hHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHH
Q 011206 250 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIF 329 (491)
Q Consensus 250 L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~ 329 (491)
+......++..|.+.+.+..+......- ..+. ..+..+.|.. . +...|.-+. ...++.
T Consensus 86 ~~~h~~~~~~~g~~~~~~~~i~~~~~~~-~~~~--~~~a~l~~a~-~-----------~~~~~~~v~-------d~~~~~ 143 (190)
T d2prra1 86 VVAHGAILRIYEKKPLVADQVAVNYLKA-DIPP--RQRAMLDFAL-K-----------VCKASHEVN-------EADFEA 143 (190)
T ss_dssp HHHHHHHHHHHHTCTTHHHHHHHHGGGS-SCCH--HHHHHHHHHH-H-----------HHHHGGGCC-------HHHHHH
T ss_pred HHHHHHHHHHcccchhhHHHHHhccccc-cccH--HHHHHHHHHH-H-----------HHHhccCCC-------HHHHHH
Confidence 5556667788899888887665443221 1221 2344555542 1 111221111 223455
Q ss_pred HHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhcc
Q 011206 330 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLT 385 (491)
Q Consensus 330 L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P 385 (491)
| +..||++.++..++.. .+ +-.-++.+. .+|+..++-.-.+-|.|
T Consensus 144 L-~~~g~s~~eivel~~~----va------~~~~~nr~~~~l~i~~d~e~~~~~~~~ 189 (190)
T d2prra1 144 L-REHGFTDEDAWDIAAI----TA------FFGLSNRMANTIGMRPNDEFFLMGRVP 189 (190)
T ss_dssp H-HTTTCCHHHHHHHHHH----HH------HHHHHHHHHHHHTCCCCHHHHHTTSSC
T ss_pred H-HHcCCCHHHHHHHHHH----HH------HHHHHHHHHHHhCCCCChHHHhcCCCC
Confidence 5 4778888888777754 21 112233333 46776655444556666
Done!