Query 011208
Match_columns 491
No_of_seqs 261 out of 528
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl1_A Transcriptional regulat 97.6 6.3E-05 2.2E-09 60.6 5.4 42 1-42 78-119 (121)
2 3gl9_A Response regulator; bet 97.6 4.4E-05 1.5E-09 62.8 4.2 40 1-40 82-121 (122)
3 1zgz_A Torcad operon transcrip 97.6 7.1E-05 2.4E-09 60.6 5.2 42 1-42 79-120 (122)
4 3t6k_A Response regulator rece 97.6 4.6E-05 1.6E-09 63.9 4.2 42 1-42 84-125 (136)
5 1jbe_A Chemotaxis protein CHEY 97.6 8.3E-05 2.8E-09 60.7 5.2 42 1-42 85-126 (128)
6 3h1g_A Chemotaxis protein CHEY 97.6 6.7E-05 2.3E-09 62.0 4.7 40 1-40 87-126 (129)
7 3f6p_A Transcriptional regulat 97.5 3.2E-05 1.1E-09 63.3 2.8 41 1-41 79-119 (120)
8 1xhf_A DYE resistance, aerobic 97.5 8.6E-05 2.9E-09 60.2 5.2 42 1-42 80-121 (123)
9 1p6q_A CHEY2; chemotaxis, sign 97.5 7.6E-05 2.6E-09 61.0 4.6 41 1-41 87-127 (129)
10 3cfy_A Putative LUXO repressor 97.5 0.0001 3.5E-09 61.9 5.2 43 1-43 82-124 (137)
11 1zh2_A KDP operon transcriptio 97.5 0.00012 4E-09 58.8 5.3 42 1-42 78-119 (121)
12 2r25_B Osmosensing histidine p 97.5 8.5E-05 2.9E-09 62.0 4.6 40 1-40 87-126 (133)
13 3kto_A Response regulator rece 97.5 9.9E-05 3.4E-09 61.5 5.0 44 1-44 86-129 (136)
14 2qzj_A Two-component response 97.5 0.00011 3.9E-09 61.5 5.2 43 1-43 81-123 (136)
15 3hdg_A Uncharacterized protein 97.5 0.00015 5.2E-09 59.9 5.8 45 1-45 85-129 (137)
16 3crn_A Response regulator rece 97.5 0.00013 4.3E-09 60.6 5.2 42 1-42 81-122 (132)
17 1dbw_A Transcriptional regulat 97.4 8.7E-05 3E-09 60.7 4.0 41 1-41 81-121 (126)
18 2a9o_A Response regulator; ess 97.4 0.00011 3.7E-09 59.0 4.3 41 1-41 78-118 (120)
19 3kht_A Response regulator; PSI 97.4 0.00016 5.5E-09 60.5 5.6 45 1-45 87-132 (144)
20 3jte_A Response regulator rece 97.4 0.00016 5.3E-09 60.3 5.2 42 1-42 83-124 (143)
21 1dcf_A ETR1 protein; beta-alph 97.4 0.00011 3.9E-09 60.8 4.2 40 1-40 89-128 (136)
22 1k68_A Phytochrome response re 97.4 0.00017 5.7E-09 59.0 5.2 44 1-44 91-134 (140)
23 1dz3_A Stage 0 sporulation pro 97.4 6E-05 2.1E-09 62.0 2.4 42 1-42 83-124 (130)
24 1tmy_A CHEY protein, TMY; chem 97.4 0.00011 3.8E-09 59.2 3.9 39 1-39 81-119 (120)
25 1qo0_D AMIR; binding protein, 97.4 0.00013 4.4E-09 64.9 4.6 42 1-42 85-126 (196)
26 1i3c_A Response regulator RCP1 97.4 0.00018 6.3E-09 61.0 5.2 44 1-44 97-140 (149)
27 3lua_A Response regulator rece 97.3 8.9E-05 3E-09 61.8 3.0 43 1-43 87-129 (140)
28 3b2n_A Uncharacterized protein 97.3 0.00014 4.7E-09 60.4 4.1 42 1-42 83-124 (133)
29 3rqi_A Response regulator prot 97.3 9.3E-05 3.2E-09 65.6 3.0 42 1-42 85-126 (184)
30 1k66_A Phytochrome response re 97.3 0.00022 7.7E-09 59.1 5.1 44 1-44 98-141 (149)
31 3eod_A Protein HNR; response r 97.3 0.00012 4E-09 60.1 3.3 42 1-42 85-127 (130)
32 3hv2_A Response regulator/HD d 97.3 0.00027 9.4E-09 60.0 5.6 43 1-43 92-135 (153)
33 2zay_A Response regulator rece 97.3 0.00025 8.7E-09 59.3 5.2 44 1-44 88-131 (147)
34 3gt7_A Sensor protein; structu 97.3 0.00023 7.9E-09 60.8 5.0 43 1-43 87-129 (154)
35 1srr_A SPO0F, sporulation resp 97.2 0.00016 5.4E-09 58.8 3.3 39 1-39 81-119 (124)
36 3cnb_A DNA-binding response re 97.2 0.00026 9E-09 58.4 4.6 43 1-43 90-132 (143)
37 3heb_A Response regulator rece 97.2 0.00041 1.4E-08 58.7 5.9 43 1-43 95-137 (152)
38 1mb3_A Cell division response 97.2 0.00014 4.8E-09 58.8 2.6 40 1-40 81-120 (124)
39 3r0j_A Possible two component 97.2 0.00025 8.7E-09 65.8 4.7 43 1-43 101-143 (250)
40 4e7p_A Response regulator; DNA 97.2 0.00022 7.7E-09 60.3 4.0 42 1-42 100-141 (150)
41 3cg0_A Response regulator rece 97.2 0.00028 9.7E-09 58.2 4.3 44 1-44 88-131 (140)
42 3hdv_A Response regulator; PSI 97.2 0.00034 1.2E-08 57.7 4.8 42 1-42 87-128 (136)
43 3cu5_A Two component transcrip 97.2 0.00012 4.2E-09 61.7 1.9 43 1-43 83-125 (141)
44 2jba_A Phosphate regulon trans 97.2 8.9E-05 3.1E-09 60.2 0.9 42 1-42 82-123 (127)
45 3m6m_D Sensory/regulatory prot 97.1 0.00037 1.3E-08 59.0 4.6 40 1-40 96-135 (143)
46 1s8n_A Putative antiterminator 97.1 0.00017 5.8E-09 64.5 2.6 42 1-42 91-132 (205)
47 3eul_A Possible nitrate/nitrit 97.1 0.00043 1.5E-08 58.6 4.9 42 1-42 95-136 (152)
48 1qkk_A DCTD, C4-dicarboxylate 97.1 0.00053 1.8E-08 58.2 5.3 42 1-42 81-122 (155)
49 3dzd_A Transcriptional regulat 97.1 0.00031 1.1E-08 71.0 4.4 43 1-43 78-120 (368)
50 2qxy_A Response regulator; reg 97.1 0.00047 1.6E-08 57.3 4.7 42 1-42 81-122 (142)
51 1mvo_A PHOP response regulator 97.1 0.00019 6.5E-09 59.1 2.2 42 1-42 81-122 (136)
52 3f6c_A Positive transcription 97.1 0.00015 5.3E-09 59.5 1.6 42 1-42 80-121 (134)
53 3kcn_A Adenylate cyclase homol 97.1 0.00061 2.1E-08 57.7 5.3 42 1-42 82-124 (151)
54 3grc_A Sensor protein, kinase; 97.1 0.00025 8.4E-09 58.9 2.8 45 1-45 86-131 (140)
55 1a04_A Nitrate/nitrite respons 97.1 0.00048 1.6E-08 61.9 4.9 41 1-41 85-125 (215)
56 2qr3_A Two-component system re 97.1 0.00036 1.2E-08 57.5 3.7 42 1-42 86-127 (140)
57 3h5i_A Response regulator/sens 97.0 8.6E-05 2.9E-09 62.2 -0.4 44 1-44 84-127 (140)
58 3n53_A Response regulator rece 97.0 0.00014 4.9E-09 60.5 0.9 42 1-42 82-123 (140)
59 1p2f_A Response regulator; DRR 97.0 0.0007 2.4E-08 61.0 5.1 42 1-42 77-118 (220)
60 3q9s_A DNA-binding response re 97.0 0.0005 1.7E-08 64.5 4.2 41 1-41 114-154 (249)
61 1dc7_A NTRC, nitrogen regulati 96.9 0.00011 3.8E-09 59.0 -0.3 42 1-42 81-122 (124)
62 3bre_A Probable two-component 96.9 0.00078 2.7E-08 65.4 5.2 40 1-40 99-138 (358)
63 3i42_A Response regulator rece 96.9 0.00019 6.6E-09 58.5 0.8 41 1-42 83-123 (127)
64 1yio_A Response regulatory pro 96.9 0.0003 1E-08 62.8 1.9 42 1-42 82-123 (208)
65 2qvg_A Two component response 96.9 0.00067 2.3E-08 56.2 3.9 37 1-37 95-131 (143)
66 3cz5_A Two-component response 96.9 0.00048 1.6E-08 58.3 2.9 42 1-42 85-126 (153)
67 2jk1_A HUPR, hydrogenase trans 96.9 0.00091 3.1E-08 55.7 4.5 42 1-42 78-120 (139)
68 2rjn_A Response regulator rece 96.9 0.0012 4E-08 55.9 5.3 42 1-42 85-127 (154)
69 3nhm_A Response regulator; pro 96.9 0.00041 1.4E-08 56.9 2.4 44 1-45 83-126 (133)
70 2qsj_A DNA-binding response re 96.9 0.00053 1.8E-08 57.9 3.1 42 1-42 84-125 (154)
71 1kgs_A DRRD, DNA binding respo 96.8 0.00056 1.9E-08 61.6 3.2 43 1-43 80-122 (225)
72 3lte_A Response regulator; str 96.8 0.0013 4.4E-08 53.8 4.9 40 2-42 87-126 (132)
73 3eq2_A Probable two-component 96.8 0.0011 3.6E-08 66.1 5.2 42 1-42 83-125 (394)
74 2hqr_A Putative transcriptiona 96.8 0.00067 2.3E-08 61.3 3.4 41 1-41 74-115 (223)
75 1w25_A Stalked-cell differenti 96.8 0.0011 3.6E-08 67.1 5.2 42 1-42 81-122 (459)
76 2qv0_A Protein MRKE; structura 96.8 0.0011 3.8E-08 55.1 4.5 37 9-45 95-131 (143)
77 1ny5_A Transcriptional regulat 96.7 0.00079 2.7E-08 68.3 3.9 42 1-42 78-119 (387)
78 2oqr_A Sensory transduction pr 96.7 0.00082 2.8E-08 60.8 3.0 42 1-42 81-122 (230)
79 3eqz_A Response regulator; str 96.7 0.00074 2.5E-08 55.1 2.4 34 7-40 91-124 (135)
80 3cg4_A Response regulator rece 96.6 0.00022 7.6E-09 59.1 -0.7 44 2-45 88-131 (142)
81 3c3w_A Two component transcrip 96.5 0.00063 2.1E-08 62.3 0.9 42 1-42 81-122 (225)
82 3klo_A Transcriptional regulat 96.4 0.00058 2E-08 62.2 0.4 41 1-41 89-129 (225)
83 2gkg_A Response regulator homo 96.4 0.0017 5.8E-08 52.1 3.0 37 4-40 88-124 (127)
84 1ys7_A Transcriptional regulat 96.4 0.00052 1.8E-08 62.1 -0.1 43 1-43 85-127 (233)
85 2gwr_A DNA-binding response re 96.0 0.0012 4.1E-08 60.7 0.3 41 1-41 82-122 (238)
86 3sy8_A ROCR; TIM barrel phosph 95.8 0.0039 1.3E-07 62.8 3.1 43 1-43 83-130 (400)
87 3kyj_B CHEY6 protein, putative 95.7 0.0017 5.9E-08 54.4 0.1 31 4-34 98-128 (145)
88 3c3m_A Response regulator rece 95.5 0.0045 1.5E-07 51.5 1.7 40 2-41 84-123 (138)
89 2rdm_A Response regulator rece 94.7 0.011 3.6E-07 48.1 1.7 40 1-42 85-124 (132)
90 3a10_A Response regulator; pho 94.6 0.011 3.7E-07 47.1 1.5 29 11-39 87-115 (116)
91 3ogl_Q JAZ1 incomplete degron 94.5 0.018 6E-07 36.8 2.0 19 426-444 3-21 (21)
92 3luf_A Two-component system re 94.5 0.033 1.1E-06 52.7 4.9 37 1-38 80-116 (259)
93 2lpm_A Two-component response 94.0 0.0052 1.8E-07 53.4 -1.8 27 14-40 95-121 (123)
94 2j48_A Two-component sensor ki 93.6 0.017 5.7E-07 45.2 0.8 28 12-39 89-116 (119)
95 1a2o_A CHEB methylesterase; ba 93.5 0.061 2.1E-06 54.0 4.8 40 1-40 82-132 (349)
96 3t8y_A CHEB, chemotaxis respon 93.5 0.015 5E-07 50.3 0.2 38 7-44 112-151 (164)
97 2pln_A HP1043, response regula 93.4 0.038 1.3E-06 45.5 2.6 39 1-42 92-130 (137)
98 3c97_A Signal transduction his 92.7 0.064 2.2E-06 44.4 3.0 28 15-42 104-131 (140)
99 3cwo_X Beta/alpha-barrel prote 92.1 0.067 2.3E-06 48.0 2.6 38 2-39 60-99 (237)
100 3ogk_Q JAZ1 incomplete degron 91.5 0.051 1.8E-06 35.1 0.8 19 429-447 1-19 (22)
101 1w25_A Stalked-cell differenti 89.0 0.39 1.3E-05 48.3 5.2 42 1-42 230-271 (459)
102 2vyc_A Biodegradative arginine 83.9 0.34 1.2E-05 53.6 1.7 43 1-43 91-135 (755)
103 2b4a_A BH3024; flavodoxin-like 80.8 0.44 1.5E-05 39.0 0.8 24 18-41 108-131 (138)
104 3q7r_A Transcriptional regulat 71.7 5.3 0.00018 35.0 5.1 35 6-41 84-118 (121)
105 4gmf_A Yersiniabactin biosynth 48.0 20 0.00069 36.3 5.3 36 7-42 84-119 (372)
106 4g92_A HAPB protein; transcrip 46.4 23 0.0008 28.2 4.3 27 446-472 36-63 (64)
107 3hu3_A Transitional endoplasmi 39.6 0.48 1.6E-05 49.9 -8.5 29 8-36 120-148 (489)
108 3fhl_A Putative oxidoreductase 25.5 80 0.0027 30.9 5.3 37 6-42 78-116 (362)
109 3oa2_A WBPB; oxidoreductase, s 25.1 80 0.0027 30.6 5.2 37 5-41 85-123 (318)
110 1zh8_A Oxidoreductase; TM0312, 24.5 80 0.0027 30.7 5.1 35 6-40 95-131 (340)
111 3ohs_X Trans-1,2-dihydrobenzen 23.8 76 0.0026 30.5 4.7 37 5-41 78-116 (334)
112 3f4l_A Putative oxidoreductase 22.6 94 0.0032 30.1 5.1 37 5-41 77-115 (345)
113 3o9z_A Lipopolysaccaride biosy 22.2 99 0.0034 29.9 5.2 37 5-41 84-122 (312)
114 4ew6_A D-galactose-1-dehydroge 22.0 97 0.0033 30.1 5.1 37 6-42 94-132 (330)
115 4gqa_A NAD binding oxidoreduct 20.4 1.1E+02 0.0038 30.3 5.2 37 6-42 109-147 (412)
116 3kux_A Putative oxidoreductase 20.4 95 0.0033 30.2 4.7 37 5-41 79-117 (352)
No 1
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=97.62 E-value=6.3e-05 Score=60.61 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=38.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 467888899999999999999999999999999999988764
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.59 E-value=4.4e-05 Score=62.83 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.+++
T Consensus 82 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 82 LTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 5788899999999999999999999999999999988764
No 3
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.58 E-value=7.1e-05 Score=60.57 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=38.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++.
T Consensus 79 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 79 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999999999988764
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=97.58 E-value=4.6e-05 Score=63.89 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 578889999999999999999999999999999999987755
No 5
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=97.55 E-value=8.3e-05 Score=60.68 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++.
T Consensus 85 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 477888999999999999999999999999999999988764
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=97.55 E-value=6.7e-05 Score=62.02 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=36.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.+++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 87 ITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 5788899999999999999999999999999999887754
No 7
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=97.55 E-value=3.2e-05 Score=63.31 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+...+.+|+..||.|||.||++.++|...++.++++
T Consensus 79 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 79 LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 46788889999999999999999999999999998887653
No 8
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=97.54 E-value=8.6e-05 Score=60.16 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
+|++.+...+.+|++.||.+||.||++.++|...++.++++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999988764
No 9
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=97.52 E-value=7.6e-05 Score=60.98 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=37.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 58888999999999999999999999999999999988764
No 10
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.0001 Score=61.86 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
+|++.+.+.+.+|+..||.+||.||++.++|...++.++++..
T Consensus 82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999999887653
No 11
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=97.49 E-value=0.00012 Score=58.84 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 467888899999999999999999999999999999987754
No 12
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=97.49 E-value=8.5e-05 Score=62.02 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=36.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+.+.+.+|++.||.+||.||++.++|..+++.++.
T Consensus 87 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 87 LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999887654
No 13
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=97.48 E-value=9.9e-05 Score=61.51 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=39.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.+++....
T Consensus 86 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 86 MASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 57888999999999999999999999999999999999877644
No 14
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.48 E-value=0.00011 Score=61.50 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=38.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+.+.+|++.||.|||+||++.++|...++.++++..
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 4678888999999999999999999999999999999887653
No 15
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=97.46 E-value=0.00015 Score=59.93 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=40.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.+++.....
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 688899999999999999999999999999999999998776443
No 16
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=97.46 E-value=0.00013 Score=60.55 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.+++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 477888999999999999999999999999999999987654
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=97.44 E-value=8.7e-05 Score=60.73 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 47788899999999999999999999999999999887653
No 18
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=97.43 E-value=0.00011 Score=58.97 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+...+.+|++.||.+||.||++.++|...++.++++
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 78 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 46778888999999999999999999999999999887654
No 19
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=97.43 E-value=0.00016 Score=60.46 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCC-CHHHHHHHHHHHHHHHhcc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv-~~eELk~lwqhv~rk~~~~ 45 (491)
||++.+.+.+.+|+..||.+||.||+ ..++|...++.++++....
T Consensus 87 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 87 LTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp EETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999 9999999999999887554
No 20
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=97.41 E-value=0.00016 Score=60.32 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999998765
No 21
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.40 E-value=0.00011 Score=60.80 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=36.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.+++
T Consensus 89 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 89 LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp EESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 4778889999999999999999999999999999888764
No 22
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.40 E-value=0.00017 Score=59.04 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=39.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++...
T Consensus 91 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 91 LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 46778889999999999999999999999999999999887754
No 23
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=97.39 E-value=6e-05 Score=62.03 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 467888999999999999999999999999999998887643
No 24
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=97.39 E-value=0.00011 Score=59.25 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=35.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 39 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~ 39 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 467888999999999999999999999999999887764
No 25
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=97.38 E-value=0.00013 Score=64.90 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=38.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|+..||.|||+||++.++|...++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999887654
No 26
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=97.36 E-value=0.00018 Score=60.95 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=39.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.+.+....
T Consensus 97 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 140 (149)
T 1i3c_A 97 LTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWLE 140 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTT
T ss_pred EECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 46778889999999999999999999999999999998776653
No 27
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=97.34 E-value=8.9e-05 Score=61.76 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++..
T Consensus 87 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 87 ATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 4788899999999999999999999999999999999876653
No 28
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=97.34 E-value=0.00014 Score=60.41 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|++.||.+||.||++.++|...++.+++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 83 VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 477888999999999999999999999999999999887654
No 29
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=97.32 E-value=9.3e-05 Score=65.65 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=38.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|+..||.|||+||++.++|...++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999999887655
No 30
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.32 E-value=0.00022 Score=59.06 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++...
T Consensus 98 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 98 MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 46788889999999999999999999999999999999887754
No 31
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=97.31 E-value=0.00012 Score=60.07 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=35.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCC-CHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv-~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||+ ..++|..+++.+++..
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 47788899999999999999999999 9999999999988654
No 32
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=97.30 E-value=0.00027 Score=59.97 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHhc-cceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~G-A~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+.+.+|+..| |.+||.||+..++|...++.++++..
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 57889999999999999 99999999999999999999987663
No 33
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=97.29 E-value=0.00025 Score=59.28 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++...
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999999999877643
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=97.29 E-value=0.00023 Score=60.84 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++..
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999987764
No 35
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=97.24 E-value=0.00016 Score=58.82 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=35.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 39 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~ 39 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 477888999999999999999999999999999887764
No 36
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=97.23 E-value=0.00026 Score=58.41 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++..
T Consensus 90 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 90 MTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 4677888999999999999999999999999999999887653
No 37
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=97.23 E-value=0.00041 Score=58.69 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.+.+...
T Consensus 95 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 95 LTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999999999866553
No 38
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=97.20 E-value=0.00014 Score=58.80 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++.+.+.+.++++.||.+||.||++.++|...++.+++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4777888889999999999999999999999999887764
No 39
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=97.20 E-value=0.00025 Score=65.81 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=39.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++++.+++.+|+..||.|||+||++.++|...++.++++..
T Consensus 101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 5788999999999999999999999999999999999988753
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=97.20 E-value=0.00022 Score=60.32 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||+..++|...++.+++..
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 477889999999999999999999999999999999887653
No 41
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=97.18 E-value=0.00028 Score=58.18 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+++..||.+||.||++.++|...++.+++....
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 46778889999999999999999999999999999999876643
No 42
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=97.18 E-value=0.00034 Score=57.71 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||+..++|...++.++...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 467888999999999999999999999999999998876544
No 43
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=97.16 E-value=0.00012 Score=61.65 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+++.+|++.||.+||.||++.++|...++.++++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 83 MSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp ECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4777888889999999999999999999999999999887664
No 44
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=97.15 E-value=8.9e-05 Score=60.21 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 82 LTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 467788899999999999999999999999999999887653
No 45
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=97.13 E-value=0.00037 Score=59.00 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=35.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+|++.+.+.+.+|++.||.+||.||+..++|...+..+..
T Consensus 96 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 96 LSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred EeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999998877644
No 46
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=97.13 E-value=0.00017 Score=64.54 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|+..||.|||.||++.++|...++.++++.
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999987665
No 47
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=97.12 E-value=0.00043 Score=58.55 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||+..++|...++.++++.
T Consensus 95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 478889999999999999999999999999999999887654
No 48
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=97.10 E-value=0.00053 Score=58.18 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999987654
No 49
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.09 E-value=0.00031 Score=71.01 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=39.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+++.+|++.||.|||.||++.++|...+++++++..
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999987653
No 50
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.00047 Score=57.30 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 467788999999999999999999999999999999987654
No 51
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=97.08 E-value=0.00019 Score=59.12 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+...+.+|++.||.+||.||++.++|...++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 356677778889999999999999999999999999887654
No 52
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=97.07 E-value=0.00015 Score=59.49 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=35.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||+..++|...++.++++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 467788889999999999999999999999999999987654
No 53
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=97.06 E-value=0.00061 Score=57.67 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHHhc-cceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~G-A~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..| |.+||.||++.++|...++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 46788899999999999 9999999999999999999987665
No 54
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=97.06 E-value=0.00025 Score=58.88 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCCcchHHHHH-HHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011208 1 MSSQDSVSTVY-KCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 1 MS~~d~~e~v~-kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
||++.+.+.+. +|+..||.+||.||++.++|...++.++++....
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 46777777777 8999999999999999999999999998887544
No 55
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=97.06 E-value=0.00048 Score=61.90 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++++.+++.+|+..||.+||.||++.++|...++.+++.
T Consensus 85 ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 85 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp EECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 47888999999999999999999999999999999988764
No 56
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=97.05 E-value=0.00036 Score=57.52 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.+||.||++.++|...+++++++.
T Consensus 86 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 86 FTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 467788899999999999999999999999999999887654
No 57
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=97.01 E-value=8.6e-05 Score=62.20 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 44 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~ 44 (491)
||++.+.+.+.+|+..||.+||.||+..++|...++.++++...
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 46677777888999999999999999999999999999877643
No 58
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=97.01 E-value=0.00014 Score=60.49 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=34.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp EECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 467778888899999999999999999999999999998766
No 59
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=96.97 E-value=0.0007 Score=61.03 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|+..||.+||.||++.++|...++.++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 478889999999999999999999999999999999988763
No 60
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=96.95 E-value=0.0005 Score=64.49 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+++.+|+..||.+||.||+..++|...++.++++
T Consensus 114 lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 114 LTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999998887654
No 61
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=96.94 E-value=0.00011 Score=59.03 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=37.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|++.||.|||.||++.++|...++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 467777888899999999999999999999999999987653
No 62
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=96.91 E-value=0.00078 Score=65.40 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
||++++++++.+|++.||.|||+||++.++|...++.+++
T Consensus 99 ~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999887754
No 63
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=96.91 E-value=0.00019 Score=58.53 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=32.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+. .+++..||.+||.||++.++|...++++++..
T Consensus 83 ~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 83 VSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 355666666 78999999999999999999999999987654
No 64
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.89 E-value=0.0003 Score=62.78 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|+..||.|||.||++.++|...++.+++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 477888889999999999999999999999999999987654
No 65
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=96.88 E-value=0.00067 Score=56.24 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 37 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqh 37 (491)
||++.+.+.+.+|++.||.+||.||++.++|...+++
T Consensus 95 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 95 LTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp EESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 4667788999999999999999999999999988665
No 66
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=96.86 E-value=0.00048 Score=58.31 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 85 FTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 467788899999999999999999999999999998886543
No 67
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=96.86 E-value=0.00091 Score=55.66 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCCcchHHHHHHHHHh-ccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMR-GAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~-GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+...+.+++.. ||.|||.||++.++|...++.+++..
T Consensus 78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 4677788889999987 59999999999999999999887654
No 68
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.85 E-value=0.0012 Score=55.91 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=37.8
Q ss_pred CCCcchHHHHHHHHHhc-cceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~G-A~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..| |.+||.||++.++|...++.+++..
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 46778889999999998 9999999999999999999987655
No 69
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=96.85 E-value=0.00041 Score=56.87 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=32.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
||++.+.+. .+|+..||.+||.||++.++|...++.++++....
T Consensus 83 ~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 126 (133)
T 3nhm_A 83 VSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAE 126 (133)
T ss_dssp EESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred EeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhccc
Confidence 356666666 89999999999999999999999999998877543
No 70
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=96.85 E-value=0.00053 Score=57.94 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.+++..
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 577788899999999999999999999999999999887654
No 71
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=96.82 E-value=0.00056 Score=61.57 Aligned_cols=43 Identities=33% Similarity=0.385 Sum_probs=39.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+++.+|+..||.+||.||++.++|...++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 5788899999999999999999999999999999999987753
No 72
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.80 E-value=0.0013 Score=53.81 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
|+++.. .+.+|++.||.+||.||+..++|...+++++...
T Consensus 87 ~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 87 SGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp CCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 344444 7889999999999999999999999988876543
No 73
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=96.79 E-value=0.0011 Score=66.13 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=35.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCC-CHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv-~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|++.||.|||+||+ ..++|...++.++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999 6899999988887654
No 74
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=96.79 E-value=0.00067 Score=61.28 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCC-CHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv-~~eELk~lwqhv~rk 41 (491)
||++.+.+++.+|+..||.+||.||+ +.++|...++.++++
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 57889999999999999999999999 999999998887654
No 75
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=96.78 E-value=0.0011 Score=67.10 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++++.+.+.+|++.||.|||+||++.++|...++.+++..
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999887644
No 76
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=96.78 E-value=0.0011 Score=55.11 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=33.3
Q ss_pred HHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011208 9 TVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 9 ~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
.+.+|+..||.+||.||+..++|...+++++++....
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 95 HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999999999999999998777544
No 77
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.74 E-value=0.00079 Score=68.32 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=38.9
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|++.||.|||.||++.++|...++++++..
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999987654
No 78
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=96.65 E-value=0.00082 Score=60.84 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||+..++|...++.++++.
T Consensus 81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 477888999999999999999999999999999999987653
No 79
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=96.65 E-value=0.00074 Score=55.13 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 7 VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 7 ~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
.+.+.+++..||.+||.||++.++|...+++++.
T Consensus 91 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 91 AETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp HHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 3788889999999999999999999999888754
No 80
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=96.64 E-value=0.00022 Score=59.11 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHhcc
Q 011208 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 45 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~~~ 45 (491)
|++.+.+.+.+++..||.+||.||++.++|...+++++++....
T Consensus 88 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 45566667788999999999999999999999999998776443
No 81
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.45 E-value=0.00063 Score=62.31 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=39.0
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+++.+|+..||.+||.||++.++|...++.+++..
T Consensus 81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 578889999999999999999999999999999999988764
No 82
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=96.41 E-value=0.00058 Score=62.22 Aligned_cols=41 Identities=5% Similarity=-0.011 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+++..|+..||.|||.||+..++|...++.+++.
T Consensus 89 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 89 INCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred EECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 46778888999999999999999999999999999888764
No 83
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=96.40 E-value=0.0017 Score=52.06 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 4 QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 4 ~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
+.+.+.+.+++..||.+||.||++.++|...++++++
T Consensus 88 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 88 NPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp CGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 3456788899999999999999999999999988764
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=96.38 E-value=0.00052 Score=62.09 Aligned_cols=43 Identities=35% Similarity=0.447 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
||++.+.+++.+|+..||.|||.||++.++|...++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 4677788888999999999999999999999999999987764
No 85
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=96.03 E-value=0.0012 Score=60.69 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=35.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++
T Consensus 82 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 82 LTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 46677778899999999999999999999999998877543
No 86
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=95.82 E-value=0.0039 Score=62.76 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCCcchH-----HHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHHh
Q 011208 1 MSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~~-----e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~~ 43 (491)
+|++++. ..+.+|+..||.|||.||++.++|..+++.++++..
T Consensus 83 ~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 83 SSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp SCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 4667766 788899999999999999999999999999877653
No 87
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=95.74 E-value=0.0017 Score=54.36 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHhccceeEeCCCCHHHHHHH
Q 011208 4 QDSVSTVYKCMMRGAADYLVKPVRRNELRNL 34 (491)
Q Consensus 4 ~d~~e~v~kal~~GA~DYLlKPv~~eELk~l 34 (491)
+.+.+.+.+|+..||.+||.||++.++|...
T Consensus 98 ~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 98 VSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp STTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred cCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 6667788999999999999999996655444
No 88
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=95.47 E-value=0.0045 Score=51.50 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.2
Q ss_pred CCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 2 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
|++.+......++..||.+||.||++.++|...++.++++
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 4444444444445556789999999999999999888654
No 89
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=94.71 E-value=0.011 Score=48.12 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..| +||.||++.++|...++++++..
T Consensus 85 ~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 35667777778887776 79999999999999998886543
No 90
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=94.60 E-value=0.011 Score=47.13 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHhccceeEeCCCCHHHHHHHHHHHH
Q 011208 11 YKCMMRGAADYLVKPVRRNELRNLWQHVW 39 (491)
Q Consensus 11 ~kal~~GA~DYLlKPv~~eELk~lwqhv~ 39 (491)
.+++..||.+||.||++.++|...++.++
T Consensus 87 ~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 87 SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 45678899999999999999998887764
No 91
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.52 E-value=0.018 Score=36.79 Aligned_cols=19 Identities=53% Similarity=0.758 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhhccC.....
Q 011208 426 SIQREAALNKFRLKRKDRC..... 444 (491)
Q Consensus 426 ~~~R~~~l~ryr~Krk~R~..... 444 (491)
+..|.+.|+||.+|||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4679999999999999984
No 92
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=94.51 E-value=0.033 Score=52.66 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=28.4
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 38 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv 38 (491)
||++++.+.+.+|++.||.|||+||+.. .+..+...+
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~-~~~~~~~~~ 116 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH-SLQYAVGLV 116 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH-HHHHHHHHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh-HHHHHHHhh
Confidence 5889999999999999999999999754 344444433
No 93
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=93.96 E-value=0.0052 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHhccceeEeCCCCHHHHHHHHHHHHH
Q 011208 14 MMRGAADYLVKPVRRNELRNLWQHVWR 40 (491)
Q Consensus 14 l~~GA~DYLlKPv~~eELk~lwqhv~r 40 (491)
.++||.|||.|||+.++|...++.+.|
T Consensus 95 ~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 95 TRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp SSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred HhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 457999999999999999998876654
No 94
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=93.61 E-value=0.017 Score=45.16 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHhccceeEeCCCCHHHHHHHHHHHH
Q 011208 12 KCMMRGAADYLVKPVRRNELRNLWQHVW 39 (491)
Q Consensus 12 kal~~GA~DYLlKPv~~eELk~lwqhv~ 39 (491)
+++..||.+||.||++.++|...+++++
T Consensus 89 ~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 89 PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 6889999999999999999998887654
No 95
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=93.52 E-value=0.061 Score=54.04 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCcchH--HHHHHHHHhccceeEeCCCCH---------HHHHHHHHHHHH
Q 011208 1 MSSQDSV--STVYKCMMRGAADYLVKPVRR---------NELRNLWQHVWR 40 (491)
Q Consensus 1 MS~~d~~--e~v~kal~~GA~DYLlKPv~~---------eELk~lwqhv~r 40 (491)
||++.+. +.+.+|++.||.|||.||+.. ++|...++.+.+
T Consensus 82 lS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 82 VSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp EECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred EECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 3556654 568999999999999999983 666666666544
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=93.47 E-value=0.015 Score=50.32 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccceeEeCCCCHHHHHHH--HHHHHHHHhc
Q 011208 7 VSTVYKCMMRGAADYLVKPVRRNELRNL--WQHVWRRQSS 44 (491)
Q Consensus 7 ~e~v~kal~~GA~DYLlKPv~~eELk~l--wqhv~rk~~~ 44 (491)
.+.+.+|+..||.|||.||++.++|... ...+++++..
T Consensus 112 ~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~ 151 (164)
T 3t8y_A 112 AAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQ 151 (164)
T ss_dssp CHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHH
T ss_pred hHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHH
Confidence 3478899999999999999998888532 3455555433
No 97
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=93.40 E-value=0.038 Score=45.48 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=30.1
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||++.+.+.+.+|+..||.+||.||+. ....++.. +++.
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~~l~~~-i~~~ 130 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIAKPYR--SIKALVAR-IEAR 130 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCS--CHHHHHHH-HHHH
T ss_pred EeCCCCHHHHHHHHHcCCceeeeCCCC--CHHHHHHH-HHHH
Confidence 467888999999999999999999986 44455444 3444
No 98
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=92.67 E-value=0.064 Score=44.36 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.5
Q ss_pred HhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 15 MRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 15 ~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
..||.+||.||++.++|...++.+++..
T Consensus 104 ~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 104 GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 5699999999999999999998886543
No 99
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=92.09 E-value=0.067 Score=48.02 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCcchHHHHHHHHHhccceeEeCC--CCHHHHHHHHHHHH
Q 011208 2 SSQDSVSTVYKCMMRGAADYLVKP--VRRNELRNLWQHVW 39 (491)
Q Consensus 2 S~~d~~e~v~kal~~GA~DYLlKP--v~~eELk~lwqhv~ 39 (491)
++....+.+.+|++.||.+||+|| ++..+|...+..++
T Consensus 60 ~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 60 SAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTF 99 (237)
T ss_dssp CCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHh
Confidence 344558899999999999999999 77778877666654
No 100
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=91.54 E-value=0.051 Score=35.07 Aligned_cols=19 Identities=53% Similarity=0.716 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 011208 429 REAALNKFRLKRKDRCYDK 447 (491)
Q Consensus 429 R~~~l~ryr~Krk~R~f~K 447 (491)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5789999999999997654
No 101
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=88.95 E-value=0.39 Score=48.27 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=35.3
Q ss_pred CCCcchHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 1 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 1 MS~~d~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
||+.+..+...+|+..||.||+.||+..++|...+..++++.
T Consensus 230 lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 230 MVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 356677778889999999999999999999988887766544
No 102
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=83.88 E-value=0.34 Score=53.58 Aligned_cols=43 Identities=2% Similarity=0.057 Sum_probs=34.5
Q ss_pred CCCcch-HHHHHHHHHhccceeEeCCCCHHH-HHHHHHHHHHHHh
Q 011208 1 MSSQDS-VSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWRRQS 43 (491)
Q Consensus 1 MS~~d~-~e~v~kal~~GA~DYLlKPv~~eE-Lk~lwqhv~rk~~ 43 (491)
||+.++ .+..-.++..||.|||.||++..| |..-++.++|+..
T Consensus 91 lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 91 LGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp EECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 355555 666778899999999999999999 7777777777754
No 103
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=80.84 E-value=0.44 Score=39.02 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.6
Q ss_pred cceeEeCCCCHHHHHHHHHHHHHH
Q 011208 18 AADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 18 A~DYLlKPv~~eELk~lwqhv~rk 41 (491)
|.+||.||++.++|...+++++++
T Consensus 108 ~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 108 NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred HHheeeCCCCHHHHHHHHHHHHHh
Confidence 789999999999999998876543
No 104
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=71.70 E-value=5.3 Score=34.95 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHH
Q 011208 6 SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 41 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk 41 (491)
+.|.+.+-|..||- |||.||...-|+.++.--+|.
T Consensus 84 ~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 84 DEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp CHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 56788899999999 999999999998888766654
No 105
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=48.00 E-value=20 Score=36.26 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHHHHhccceeEeCCCCHHHHHHHHHHHHHHH
Q 011208 7 VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 42 (491)
Q Consensus 7 ~e~v~kal~~GA~DYLlKPv~~eELk~lwqhv~rk~ 42 (491)
++.+++||+.|.-=|+-||+..+|+..|++-+.++-
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g 119 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQG 119 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999988876554
No 106
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=46.37 E-value=23 Score=28.20 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcccchhhhhhhhhCCC-CCcceeccc
Q 011208 446 DKKVRYESRKKLAEQRPR-VKGQFVRQV 472 (491)
Q Consensus 446 ~KkirY~~RK~~A~~RpR-vKGrFvk~~ 472 (491)
.|+.-|++|-+.|-.||| -.|||....
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 466789999999999999 779998764
No 107
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.55 E-value=0.48 Score=49.92 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHhccceeEeCCCCHHHHHHHHH
Q 011208 8 STVYKCMMRGAADYLVKPVRRNELRNLWQ 36 (491)
Q Consensus 8 e~v~kal~~GA~DYLlKPv~~eELk~lwq 36 (491)
+.+.+||+.||.|||+||+..++|..+++
T Consensus 120 ~~av~a~~~ga~d~~~Kp~~~~~l~~~~~ 148 (489)
T 3hu3_A 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRK 148 (489)
T ss_dssp GGGSSSCCSCHHHHTHHHHHTTTCEEEET
T ss_pred CcccccccchhHHHHhHHHHhhcCccccc
Confidence 34557889999999999999887765543
No 108
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=25.49 E-value=80 Score=30.89 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHHH
Q 011208 6 SVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk~ 42 (491)
-++.+.+||+.|.-=|+-||+ +.+|++.|++.+.++-
T Consensus 78 H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (362)
T 3fhl_A 78 HYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKG 116 (362)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 478899999999999999998 8899999988775543
No 109
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=25.13 E-value=80 Score=30.62 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhccceeEeCC--CCHHHHHHHHHHHHHH
Q 011208 5 DSVSTVYKCMMRGAADYLVKP--VRRNELRNLWQHVWRR 41 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKP--v~~eELk~lwqhv~rk 41 (491)
.-++++.+||++|..=|+-|| ++.+|++.|++.+.++
T Consensus 85 ~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 85 LHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp GHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 357889999999999999999 6788999998877554
No 110
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=24.55 E-value=80 Score=30.66 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHH
Q 011208 6 SVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 40 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~r 40 (491)
-++.+.+||+.|..=|+-||+ +.+|...|++.+.+
T Consensus 95 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 95 NLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp HHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999997 88999999887644
No 111
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=23.83 E-value=76 Score=30.53 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHH
Q 011208 5 DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 41 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk 41 (491)
.-++++.+||++|..=|+-||+ +.+|++.|++.+.++
T Consensus 78 ~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 78 QHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp GHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3578899999999988999998 889999998877543
No 112
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=22.60 E-value=94 Score=30.12 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHH
Q 011208 5 DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 41 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk 41 (491)
.-++.+.+||+.|..=|+-||+ +.+|.+.|++.+.++
T Consensus 77 ~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 77 SHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp GHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 3578999999999888888999 788999998877554
No 113
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=22.17 E-value=99 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHH
Q 011208 5 DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 41 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk 41 (491)
.-++++.+||++|..=|+-||+ +.+|++.|++.+.++
T Consensus 84 ~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 84 LHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp GHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 3578899999999999999996 678999998887554
No 114
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=22.01 E-value=97 Score=30.10 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHHH
Q 011208 6 SVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk~ 42 (491)
-++.+.+||++|..=|+-||+ +.+|+..|++.+.++-
T Consensus 94 H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g 132 (330)
T 4ew6_A 94 RYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQG 132 (330)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 367899999999999999997 7889999988775543
No 115
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=20.42 E-value=1.1e+02 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhccceeEeCCC--CHHHHHHHHHHHHHHH
Q 011208 6 SVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRRQ 42 (491)
Q Consensus 6 ~~e~v~kal~~GA~DYLlKPv--~~eELk~lwqhv~rk~ 42 (491)
-++++.+||+.|.-=|+-||+ +.+|.+.|++-+.++-
T Consensus 109 H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 147 (412)
T 4gqa_A 109 HYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAG 147 (412)
T ss_dssp HHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhC
Confidence 468999999999999999996 7789999988765443
No 116
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=20.38 E-value=95 Score=30.16 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhccceeEeCC--CCHHHHHHHHHHHHHH
Q 011208 5 DSVSTVYKCMMRGAADYLVKP--VRRNELRNLWQHVWRR 41 (491)
Q Consensus 5 d~~e~v~kal~~GA~DYLlKP--v~~eELk~lwqhv~rk 41 (491)
.-++.+.+||+.|..=|+-|| ++.+|++.|++.+.++
T Consensus 79 ~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~ 117 (352)
T 3kux_A 79 THFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDA 117 (352)
T ss_dssp THHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHc
Confidence 357899999999998999999 6788999998876543
Done!