BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011211
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 344 bits (883), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 205/481 (42%), Positives = 274/481 (56%), Gaps = 27/481 (5%)
Query: 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG 61
F KDG+PFR I G +HY R+ +W+DRLL+ K GLN IQTYVPWN HEP PG+ FS
Sbjct: 18 FLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSE 77
Query: 62 IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVE 121
D+ FL+L +L LLV+LRPGPYICAEW++GG RSSD YL V+
Sbjct: 78 DHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKESILLRSSDPDYLAAVD 136
Query: 122 RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYLHHLVTLARAHLGKDIILYT 180
+W GVLLPK+ PLLY GGP++ VQ+ENE+GSY D +YL L R HLG D++L+T
Sbjct: 137 KWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFT 196
Query: 181 TDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLT 240
TDG + L G ++G ++ VDF TG+ F Q++ K P ++SEFYTGWL
Sbjct: 197 TDGAHKTFLKCGALQG--LYTTVDFGTGSNITDAFLSQRKCEP--KGPLINSEFYTGWLD 252
Query: 241 HWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTS 300
HWG+ + + AS L IL++ S LYM GGTNF ++NGAN S Y TS
Sbjct: 253 HWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGAN-----SPYAAQPTS 307
Query: 301 YDYDAPIKESGDVDNPKFKAIRRVVEKFSPASLPSVLPDNEKAGFGPIQLQKTAXXXXXX 360
YDYDAP+ E+GD+ K+ A+R +++KF + P K +G + L+K
Sbjct: 308 YDYDAPLSEAGDLTE-KYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAAL 366
Query: 361 XXXXXXXXXESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLLISK---VHDRAQVFISC 417
+S PL+ V Q +GF+LY + + L S VHDRA V +
Sbjct: 367 DILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAV-- 424
Query: 418 PTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILQ 477
G P G +ER N ++L N + +L +LVENMGRVNYG Y+ D KG++
Sbjct: 425 -----DGIPQ--GVLER--NNVITL-NITGKAGATLDLLVENMGRVNYGAYINDFKGLVS 474
Query: 478 K 478
Sbjct: 475 N 475
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 183/491 (37%), Positives = 257/491 (52%), Gaps = 28/491 (5%)
Query: 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG 61
F DG+ F+I+ G +HYFR+ P+ W L KALG NT++TYV WNLHEP G+ F G
Sbjct: 10 FYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEG 69
Query: 62 IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVE 121
DL FL++ Q L L ++RP P+ICAEW+ GG RSSD AY++ V
Sbjct: 70 DLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGL--PAWLLTKNMRIRSSDPAYIEAVG 127
Query: 122 RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTT 181
R++ LLP++ P L D GG I+M+Q+ENE+GSYG+DK YL + L G L+T+
Sbjct: 128 RYYDQLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIRQLME-ECGVTCPLFTS 186
Query: 182 DGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPL-SSEFYTGWLT 240
DG R TL GT+ + +F +F + A P+ ++Q+ F+ GK PL EF+ GW
Sbjct: 187 DGPWRATLKAGTLIEEDLFVTGNFGSKA-PYNFSQMQEFFDEHGKKWPLMCMEFWDGWFN 245
Query: 241 HWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTS 300
W E I D A + ++L Q GS LYM HGGTNFGF NG + T P +TS
Sbjct: 246 RWKEPIITRDPKELADAVREVLEQ-GSINLYMFHGGTNFGFMNGCSARGTLD--LPQVTS 302
Query: 301 YDYDAPIKESGDVDNPKFKAIRRVVEKFSPASLPSVLP-DNEKAGFGPIQLQKTAXXXXX 359
YDYDA + E G+ K+ A+++++ + P + P E I L +
Sbjct: 303 YDYDALLDEEGN-PTAKYLAVKKMMATHF-SEYPQLEPLYKESMELDAIPLVEKV--SLF 358
Query: 360 XXXXXXXXXXESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPT 419
ES P ME +GQ +G+LLY +E L I DRAQ+++
Sbjct: 359 ETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAEEERLRIIDGRDRAQLYVDGQW 418
Query: 420 EDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRVNYG-PYMFD--EKGI- 475
+ T +G + + L L +L+ENMGRVNYG ++ D KGI
Sbjct: 419 VKTQYQ-TEIGEDIFYQGKKKGLSR--------LDILIENMGRVNYGHKFLADTQRKGIR 469
Query: 476 --LQKNLHSML 484
+ K+LH +L
Sbjct: 470 TGVCKDLHFLL 480
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 164/492 (33%), Positives = 245/492 (49%), Gaps = 32/492 (6%)
Query: 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG 61
F +GEPF + ++HY RI ++WE R+ KALG NTI YV WN HEP+ G+ F+G
Sbjct: 15 FLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFAG 74
Query: 62 IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVE 121
D+ +F +L Q+ V++RPGPY+CAEW+ GG R D Y + V+
Sbjct: 75 QKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGL-PWWLLKKKDIKLREQDPYYXERVK 133
Query: 122 RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTT 181
+ + ++A L GG I+ VQ+ENE+G++G DK Y+ + + + L+
Sbjct: 134 LFLNEVGKQLADLQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGFTGVPLFQC 193
Query: 182 DGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLTH 241
D + + D + ++F TGA FK K+ +P SEF++GW H
Sbjct: 194 DWNS--NFENNAL--DDLLWTINFGTGANIDEQFKRLKELRP--DTPLXCSEFWSGWFDH 247
Query: 242 WGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSY 301
WG K A+ ++ L +N S LY HGGT+FG + GAN N + P TSY
Sbjct: 248 WGAKHETRSAEELVKGXKEXLDRNISFSLYXTHGGTSFGHWGGANFPN----FSPTCTSY 303
Query: 302 DYDAPIKESGDVDNPKFKAIRRVVEKFSP--ASLPSVLPDNEKAGFGPIQLQKTAXXXXX 359
DYDAPI ESG V PK+ +R ++ + P +LP + PD+ I +
Sbjct: 304 DYDAPINESGKV-TPKYLEVRNLLGNYLPEGETLPEI-PDS----IPTIAIPTIKXTEXA 357
Query: 360 XXXXXXXXXXESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPT 419
ESE+ + E+ Q +G +LY + D +LLI++ HD AQVF++
Sbjct: 358 VLFDNLPHPKESEDIRTXEAFDQGWGSILYRTSLSASDKEQTLLITEAHDWAQVFLNGKK 417
Query: 420 EDNSGRPTYVGTIERWSNRA-LSLPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILQK 478
+ T+ R + LP + G + +LVE GR N+G ++D KGI +K
Sbjct: 418 ---------LATLSRLKGEGVVKLPPLKEGDRLD--ILVEAXGRXNFGKGIYDWKGITEK 466
Query: 479 -NLHSMLGAFLL 489
L S G L+
Sbjct: 467 VELQSDKGVELV 478
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 153/364 (42%), Gaps = 39/364 (10%)
Query: 6 GEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIAD 64
GE I G++H FR+ +P + D + KALG NT+ YV W L E KPG+ GI
Sbjct: 37 GERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFS 96
Query: 65 LVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWW 124
L F + K + ++ RPGPYI AE GGF + D YL + +
Sbjct: 97 LEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKLRTDAPD--YLHATDNYV 154
Query: 125 GVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-----DKEYLHHLVTLARAHLGKDIILY 179
+ IA GGP+++ Q ENE+ + +K Y+ +++ AR + G + L
Sbjct: 155 AHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQAR-NAGIIVPLI 213
Query: 180 TTDGGTRETLLKGTIRGDA-VFAAVDFSTG---AEP--WPIFKL-----QKQFNAPGKSP 228
D T GT G ++ + G A P WP L Q N +P
Sbjct: 214 NNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTP 273
Query: 229 PLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNGSAV------LYMAHGGTNFGFY 282
EF G +G + + E++ +N A +YM GGTN+G
Sbjct: 274 FSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWG-- 331
Query: 283 NGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRVVE--KFSPASLPSVLPDN 340
N G+ TSYDY A I+E +D K+ ++ + K SP + + P+N
Sbjct: 332 ---NLGHPGG-----YTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYI-TATPEN 382
Query: 341 EKAG 344
G
Sbjct: 383 ATQG 386
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 149/355 (41%), Gaps = 39/355 (10%)
Query: 5 DGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIA 63
+GE I G++H +R+ + + D + KALG N + YV W L E PG GI
Sbjct: 16 NGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIF 75
Query: 64 DLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERW 123
DL F ++ + ++ RPGPYI AE GGF R+SD AYL+ + +
Sbjct: 76 DLQPFFDAAKEAGIYLLARPGPYINAEVSGGGF--PGWLQRVDGILRTSDEAYLKATDNY 133
Query: 124 WGVLLPKIAPLLYDIGGPIVMVQIENEF-----GSYG-DDKEYLHHLVTLARAHLGKDII 177
+ IA GGPI++ Q ENE+ G G D Y+ ++ AR G +
Sbjct: 134 ASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHAR-DAGIVVP 192
Query: 178 LYTTDGGTRETLLKGTIRGDA-VFAAVDFSTG---AEP--WPIFKLQKQFNAPGK----S 227
+ D GT G ++ + G A P WP L F+ + S
Sbjct: 193 FISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPS 252
Query: 228 PPLS-SEFYTGWLTHWGEKIAKTDADFTASYLEKILSQN----GSAV--LYMAHGGTNFG 280
P S EF G WG A E++ +N G A LYM GGTN+G
Sbjct: 253 TPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWG 312
Query: 281 FYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRV--VEKFSPASL 333
N G + TSYDY + I ES ++ K+ ++ + K SP L
Sbjct: 313 -----NLG-----HPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYL 357
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 157 DKEYLHHLVTLARAH-----LGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEP 211
D +HHLV +A AH LG D T GTR ++ G + +A F D S
Sbjct: 138 DHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHR 197
Query: 212 WPIFKLQKQ--FNAPGKSPPLSSEFYTGWLTHWGEKI 246
+ K Q P K+ +S + GE+
Sbjct: 198 EFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEEC 234
>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
pdb|2VOA|B Chain B, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
Length = 257
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 27 EDRLLRAKALGLNTIQTYVP 46
EDRL+RAK G++ I TYVP
Sbjct: 88 EDRLIRAKIAGIDVINTYVP 107
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 5 DGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIAD 64
DG PF + ++ P + +G NT+Q + W EP G+ FS + D
Sbjct: 54 DGAPFLXLAAQVNNSSAWPSQXAKVWPAIEKVGANTVQVPIAWEQIEPVEGQFDFSYL-D 112
Query: 65 LVSFLKLCQKLDLLVM 80
L+ +K+ L+++
Sbjct: 113 LLLEQARERKVRLVLL 128
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 243 GEKIAKTDADFTASYLEKILSQNGSAVLYMAHG---GTNFGF 281
G ++ K + DF A Y E+++++ GS + HG NF F
Sbjct: 53 GIRVVKGNXDFYAGYPERLVTELGSTKIIQTHGHLFDINFNF 94
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 216 KLQKQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASYLE 259
KLQK+F S GW+ E+ K++ DFT LE
Sbjct: 739 KLQKRFGRSNLSAGRVQSTVLGWIVEREEEYKKSEKDFTLLVLE 782
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 51 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 80
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 244 EKIAKTDADFTA------SYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNT 290
E IA DAD TA SYL+ + G +L+ HG T+ G G G T
Sbjct: 4 ETIAIVDADATAETRSLLSYLDGV---RGEGILFGHHGTTSSGLTTGPTDGTT 53
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 51 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,557,780
Number of Sequences: 62578
Number of extensions: 678382
Number of successful extensions: 1473
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 24
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)