Query 011211
Match_columns 491
No_of_seqs 215 out of 1379
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 22:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-123 9E-128 1023.1 42.0 445 1-483 36-571 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-104 3E-109 847.6 39.1 462 1-484 26-514 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2E-101 5E-106 788.4 22.7 318 1-328 1-319 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.7E-43 8.1E-48 384.0 7.5 435 1-470 7-481 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 8.3E-23 1.8E-27 213.3 15.8 138 15-168 1-160 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 4.2E-11 9E-16 121.5 18.3 146 1-182 7-158 (298)
7 PRK10150 beta-D-glucuronidase; 99.3 1.3E-09 2.7E-14 121.2 25.6 142 1-171 284-439 (604)
8 PF00150 Cellulase: Cellulase 99.2 6.4E-10 1.4E-14 109.9 15.7 157 4-182 3-172 (281)
9 smart00633 Glyco_10 Glycosyl h 98.9 3.9E-08 8.4E-13 97.9 14.5 220 47-320 3-253 (254)
10 PRK09525 lacZ beta-D-galactosi 98.8 1.3E-07 2.9E-12 110.8 19.9 132 1-171 342-479 (1027)
11 COG3250 LacZ Beta-galactosidas 98.8 4E-08 8.7E-13 111.7 14.3 127 1-168 292-424 (808)
12 PRK10340 ebgA cryptic beta-D-g 98.8 1.1E-07 2.4E-12 111.5 15.8 135 1-171 326-466 (1021)
13 PF00331 Glyco_hydro_10: Glyco 98.4 8.1E-06 1.7E-10 84.3 15.6 269 11-324 11-319 (320)
14 PF13204 DUF4038: Protein of u 98.2 5.8E-05 1.3E-09 76.9 17.4 235 4-265 8-274 (289)
15 TIGR03356 BGL beta-galactosida 98.2 2.5E-06 5.3E-11 91.4 6.3 98 23-133 53-151 (427)
16 COG3693 XynA Beta-1,4-xylanase 98.1 0.0011 2.3E-08 68.0 22.1 129 33-184 55-195 (345)
17 PLN02161 beta-amylase 98.0 2.2E-05 4.9E-10 84.2 9.1 85 23-110 116-208 (531)
18 PLN00197 beta-amylase; Provisi 97.9 3.4E-05 7.4E-10 83.4 9.7 82 23-109 126-217 (573)
19 PLN02803 beta-amylase 97.9 4.1E-05 8.9E-10 82.6 10.1 119 23-148 106-253 (548)
20 PLN02705 beta-amylase 97.9 4.7E-05 1E-09 83.0 9.6 117 23-148 267-415 (681)
21 PLN02801 beta-amylase 97.9 6.3E-05 1.4E-09 80.8 10.4 119 23-148 36-184 (517)
22 PF03198 Glyco_hydro_72: Gluca 97.9 0.00022 4.8E-09 72.9 13.8 194 4-236 22-248 (314)
23 PLN02905 beta-amylase 97.8 6.6E-05 1.4E-09 82.1 9.8 119 23-148 285-433 (702)
24 PF01373 Glyco_hydro_14: Glyco 97.7 3.9E-05 8.4E-10 80.8 4.7 115 25-148 17-153 (402)
25 COG2730 BglC Endoglucanase [Ca 97.5 0.00043 9.4E-09 73.8 9.4 114 23-153 67-193 (407)
26 PRK09852 cryptic 6-phospho-bet 97.4 0.00014 3E-09 79.1 4.8 113 23-143 70-184 (474)
27 PRK15014 6-phospho-beta-glucos 97.4 0.00024 5.1E-09 77.4 5.7 112 23-142 68-181 (477)
28 PF00232 Glyco_hydro_1: Glycos 97.4 0.00024 5.3E-09 76.7 5.7 98 23-133 57-156 (455)
29 PLN02998 beta-glucosidase 97.3 0.00025 5.5E-09 77.4 5.5 114 23-144 81-195 (497)
30 PLN02814 beta-glucosidase 97.3 0.00033 7E-09 76.7 5.5 113 23-143 76-189 (504)
31 PRK09593 arb 6-phospho-beta-gl 97.2 0.00047 1E-08 75.1 5.9 113 23-143 72-186 (478)
32 PRK09589 celA 6-phospho-beta-g 97.2 0.0005 1.1E-08 74.8 5.6 113 23-143 66-180 (476)
33 PF14488 DUF4434: Domain of un 97.1 0.009 1.9E-07 56.2 13.0 128 19-171 15-151 (166)
34 PLN02849 beta-glucosidase 97.1 0.00057 1.2E-08 74.8 5.4 115 23-145 78-193 (503)
35 PRK13511 6-phospho-beta-galact 97.0 0.00077 1.7E-08 73.2 5.3 111 23-143 53-164 (469)
36 TIGR01233 lacG 6-phospho-beta- 96.9 0.0011 2.4E-08 72.0 5.7 109 23-141 52-161 (467)
37 PF02837 Glyco_hydro_2_N: Glyc 96.9 0.0015 3.3E-08 60.3 5.7 94 380-482 63-164 (167)
38 PF07745 Glyco_hydro_53: Glyco 96.9 0.0027 5.9E-08 66.1 7.7 105 27-152 27-136 (332)
39 PF13364 BetaGal_dom4_5: Beta- 96.7 0.011 2.3E-07 52.0 9.0 79 375-462 25-110 (111)
40 COG3867 Arabinogalactan endo-1 96.5 0.014 2.9E-07 59.5 9.0 112 26-153 65-183 (403)
41 COG2723 BglB Beta-glucosidase/ 96.4 0.0041 9E-08 66.9 5.3 109 23-139 58-168 (460)
42 PF02638 DUF187: Glycosyl hydr 95.7 0.034 7.5E-07 57.4 8.1 118 22-149 17-162 (311)
43 PF14871 GHL6: Hypothetical gl 95.1 0.14 3E-06 46.5 8.9 98 28-130 4-122 (132)
44 PRK09936 hypothetical protein; 94.6 0.092 2E-06 53.5 6.9 57 20-82 34-91 (296)
45 smart00642 Aamy Alpha-amylase 94.0 0.16 3.5E-06 47.7 6.8 64 23-86 18-93 (166)
46 COG1649 Uncharacterized protei 93.2 0.47 1E-05 50.9 9.6 141 22-170 62-227 (418)
47 TIGR01515 branching_enzym alph 92.6 2 4.3E-05 48.5 14.0 155 27-182 159-349 (613)
48 KOG0496 Beta-galactosidase [Ca 92.2 0.04 8.6E-07 61.3 -0.1 50 298-349 301-350 (649)
49 TIGR00542 hxl6Piso_put hexulos 92.0 3.3 7.2E-05 41.4 13.5 129 23-179 15-152 (279)
50 PF13200 DUF4015: Putative gly 91.6 0.54 1.2E-05 48.8 7.3 109 23-135 12-137 (316)
51 COG3934 Endo-beta-mannanase [C 91.4 0.13 2.9E-06 55.5 2.7 152 2-168 4-167 (587)
52 PRK09441 cytoplasmic alpha-amy 91.2 0.34 7.5E-06 52.8 5.7 68 16-83 7-101 (479)
53 PRK01060 endonuclease IV; Prov 91.2 4.4 9.5E-05 40.4 13.3 93 26-146 14-109 (281)
54 PRK13210 putative L-xylulose 5 90.2 6.3 0.00014 39.2 13.4 129 24-178 16-151 (284)
55 PRK05402 glycogen branching en 90.0 6.2 0.00013 45.5 14.8 53 30-82 272-334 (726)
56 TIGR03234 OH-pyruv-isom hydrox 90.0 7.3 0.00016 38.2 13.5 43 25-81 15-57 (254)
57 PRK10150 beta-D-glucuronidase; 89.8 1.6 3.4E-05 49.1 9.6 69 383-460 63-137 (604)
58 PF01229 Glyco_hydro_39: Glyco 89.5 0.64 1.4E-05 50.9 6.1 126 14-153 29-167 (486)
59 PF01261 AP_endonuc_2: Xylose 89.5 1.5 3.2E-05 40.9 7.8 127 30-183 1-135 (213)
60 PLN02447 1,4-alpha-glucan-bran 88.5 1 2.2E-05 51.9 7.0 60 23-83 250-320 (758)
61 PF00128 Alpha-amylase: Alpha 88.1 0.52 1.1E-05 46.6 3.9 57 27-83 7-72 (316)
62 PRK12568 glycogen branching en 87.1 16 0.00035 42.2 15.4 56 28-85 274-341 (730)
63 cd06602 GH31_MGAM_SI_GAA This 86.1 18 0.00039 37.8 14.1 74 16-90 13-93 (339)
64 PRK12313 glycogen branching en 85.2 1.7 3.7E-05 49.2 6.5 53 30-82 177-239 (633)
65 TIGR00677 fadh2_euk methylenet 85.0 2.8 6E-05 42.8 7.3 110 10-134 130-252 (281)
66 TIGR02402 trehalose_TreZ malto 84.9 1.7 3.7E-05 48.3 6.2 53 27-82 114-179 (542)
67 smart00812 Alpha_L_fucos Alpha 84.5 9 0.00019 40.9 11.1 142 16-175 76-225 (384)
68 PRK14706 glycogen branching en 84.3 20 0.00044 40.8 14.4 52 31-82 175-236 (639)
69 PRK09997 hydroxypyruvate isome 84.2 21 0.00045 35.3 13.0 50 15-81 9-58 (258)
70 PF05913 DUF871: Bacterial pro 83.9 1.8 3.9E-05 45.7 5.5 71 12-88 2-72 (357)
71 PLN02960 alpha-amylase 83.4 2.4 5.2E-05 49.6 6.6 57 27-83 420-486 (897)
72 cd06593 GH31_xylosidase_YicI Y 83.2 2.8 6.2E-05 42.8 6.5 68 22-89 22-92 (308)
73 PRK09505 malS alpha-amylase; R 83.1 2.5 5.4E-05 48.4 6.6 60 24-83 230-312 (683)
74 KOG0626 Beta-glucosidase, lact 83.1 2.4 5.3E-05 46.6 6.2 114 25-146 92-208 (524)
75 cd00019 AP2Ec AP endonuclease 82.9 39 0.00084 33.7 14.5 98 24-149 10-108 (279)
76 TIGR02104 pulA_typeI pullulana 82.6 2.3 5E-05 47.9 6.1 54 28-82 168-248 (605)
77 PRK10785 maltodextrin glucosid 82.3 2.8 6E-05 47.2 6.5 58 25-82 180-245 (598)
78 TIGR02631 xylA_Arthro xylose i 82.1 31 0.00066 36.8 14.0 100 22-145 30-134 (382)
79 TIGR02456 treS_nterm trehalose 81.8 3.1 6.6E-05 46.2 6.5 60 23-82 27-95 (539)
80 TIGR02403 trehalose_treC alpha 81.7 2.3 4.9E-05 47.3 5.5 60 23-82 26-94 (543)
81 KOG2230 Predicted beta-mannosi 81.0 7.6 0.00016 43.3 8.9 110 2-150 330-444 (867)
82 PF14307 Glyco_tran_WbsX: Glyc 80.2 38 0.00083 35.4 13.8 136 22-182 56-197 (345)
83 PRK13209 L-xylulose 5-phosphat 80.2 35 0.00075 34.0 13.0 128 24-179 21-157 (283)
84 PRK09989 hypothetical protein; 79.7 35 0.00075 33.7 12.7 43 25-81 16-58 (258)
85 PRK00042 tpiA triosephosphate 79.6 9.7 0.00021 38.3 8.7 92 29-131 78-196 (250)
86 PRK09856 fructoselysine 3-epim 79.3 58 0.0013 32.1 14.2 126 24-176 13-145 (275)
87 PRK10933 trehalose-6-phosphate 78.4 4.7 0.0001 45.0 6.7 55 25-82 34-100 (551)
88 PF13199 Glyco_hydro_66: Glyco 78.2 3.2 6.9E-05 46.4 5.2 81 23-103 117-212 (559)
89 PRK14565 triosephosphate isome 78.1 6.6 0.00014 39.2 6.9 87 29-127 77-186 (237)
90 cd04908 ACT_Bt0572_1 N-termina 77.3 9.4 0.0002 29.6 6.3 55 23-81 12-66 (66)
91 PLN02361 alpha-amylase 77.0 5.5 0.00012 42.8 6.4 56 27-82 32-95 (401)
92 PRK10340 ebgA cryptic beta-D-g 76.8 7.1 0.00015 46.8 7.9 93 384-485 108-207 (1021)
93 PRK14705 glycogen branching en 76.5 5 0.00011 48.8 6.5 54 29-82 771-834 (1224)
94 PF02065 Melibiase: Melibiase; 76.1 38 0.00083 36.4 12.4 164 16-184 50-236 (394)
95 cd02742 GH20_hexosaminidase Be 76.0 25 0.00053 36.1 10.7 58 22-82 14-91 (303)
96 PF03659 Glyco_hydro_71: Glyco 76.0 15 0.00031 39.4 9.2 53 22-83 15-67 (386)
97 PF02679 ComA: (2R)-phospho-3- 75.1 3.2 6.8E-05 41.7 3.7 52 23-84 83-134 (244)
98 PRK12677 xylose isomerase; Pro 74.7 62 0.0014 34.5 13.6 90 25-134 32-126 (384)
99 PF01261 AP_endonuc_2: Xylose 74.0 30 0.00064 32.0 9.9 121 24-171 27-154 (213)
100 cd06591 GH31_xylosidase_XylS X 73.9 7.2 0.00016 40.3 6.2 66 22-88 22-91 (319)
101 cd06564 GH20_DspB_LnbB-like Gl 73.7 52 0.0011 34.1 12.5 67 11-82 6-101 (326)
102 TIGR01531 glyc_debranch glycog 73.2 14 0.0003 45.5 8.9 99 15-120 121-236 (1464)
103 cd06592 GH31_glucosidase_KIAA1 73.1 10 0.00022 38.9 7.0 69 18-89 24-96 (303)
104 PF14587 Glyco_hydr_30_2: O-Gl 72.8 32 0.0007 36.8 10.7 137 34-184 57-228 (384)
105 COG0296 GlgB 1,4-alpha-glucan 72.1 8.3 0.00018 43.7 6.5 58 23-82 164-233 (628)
106 cd06565 GH20_GcnA-like Glycosy 71.3 81 0.0017 32.4 13.1 153 23-182 16-186 (301)
107 cd06589 GH31 The enzymes of gl 71.3 9.7 0.00021 38.2 6.3 71 16-87 13-90 (265)
108 TIGR03849 arch_ComA phosphosul 71.1 9.4 0.0002 38.2 5.9 52 24-85 71-122 (237)
109 cd06598 GH31_transferase_CtsZ 70.5 11 0.00023 39.0 6.5 67 22-88 22-95 (317)
110 smart00518 AP2Ec AP endonuclea 70.0 1.2E+02 0.0025 30.0 13.8 101 14-146 3-104 (273)
111 cd06547 GH85_ENGase Endo-beta- 69.7 10 0.00022 39.8 6.2 116 40-183 32-151 (339)
112 TIGR02100 glgX_debranch glycog 69.0 7.8 0.00017 44.5 5.6 54 29-82 189-264 (688)
113 PRK09525 lacZ beta-D-galactosi 68.9 14 0.00029 44.6 7.7 92 384-484 119-218 (1027)
114 cd06600 GH31_MGAM-like This fa 68.4 11 0.00024 39.0 6.1 73 16-89 13-90 (317)
115 cd06599 GH31_glycosidase_Aec37 68.4 14 0.0003 38.2 6.8 67 23-89 28-99 (317)
116 TIGR02401 trehalose_TreY malto 68.3 12 0.00026 43.8 6.8 64 22-85 14-87 (825)
117 TIGR02103 pullul_strch alpha-1 68.1 9.1 0.0002 45.2 5.9 20 63-82 404-423 (898)
118 PRK14510 putative bifunctional 66.9 8.8 0.00019 46.9 5.7 55 28-82 191-266 (1221)
119 PRK13398 3-deoxy-7-phosphohept 66.8 30 0.00065 35.1 8.7 74 3-83 22-98 (266)
120 PRK03705 glycogen debranching 66.7 10 0.00022 43.4 5.8 54 29-82 184-261 (658)
121 PRK14507 putative bifunctional 66.6 12 0.00027 46.8 6.9 61 22-85 756-829 (1693)
122 PF01791 DeoC: DeoC/LacD famil 66.4 1.6 3.4E-05 43.0 -0.6 53 27-82 79-131 (236)
123 PRK14511 maltooligosyl trehalo 65.9 14 0.00031 43.5 6.9 62 21-85 17-91 (879)
124 cd06603 GH31_GANC_GANAB_alpha 65.9 14 0.0003 38.5 6.3 68 22-90 22-91 (339)
125 TIGR00676 fadh2 5,10-methylene 65.4 35 0.00076 34.5 8.9 110 9-133 125-247 (272)
126 cd06595 GH31_xylosidase_XylS-l 65.3 18 0.00039 36.8 6.9 66 22-87 23-98 (292)
127 TIGR02102 pullulan_Gpos pullul 64.9 11 0.00024 45.6 5.9 21 63-83 555-575 (1111)
128 PLN00196 alpha-amylase; Provis 64.7 16 0.00034 39.7 6.6 57 27-83 47-112 (428)
129 PF02055 Glyco_hydro_30: O-Gly 62.9 31 0.00066 38.2 8.5 148 20-183 93-281 (496)
130 PF08306 Glyco_hydro_98M: Glyc 61.0 7.2 0.00016 40.5 3.0 90 10-125 104-201 (324)
131 PRK09267 flavodoxin FldA; Vali 59.8 64 0.0014 29.7 9.0 112 6-131 46-167 (169)
132 cd06604 GH31_glucosidase_II_Ma 59.2 22 0.00047 37.0 6.3 73 16-89 13-90 (339)
133 cd06601 GH31_lyase_GLase GLase 58.5 26 0.00056 36.7 6.7 72 16-88 13-89 (332)
134 PLN02429 triosephosphate isome 58.1 62 0.0013 33.8 9.2 86 30-131 140-255 (315)
135 PTZ00333 triosephosphate isome 58.0 55 0.0012 33.0 8.7 92 29-132 81-200 (255)
136 PRK14582 pgaB outer membrane N 58.0 32 0.0007 39.5 7.8 110 24-151 334-468 (671)
137 COG2159 Predicted metal-depend 57.7 1.7E+02 0.0038 29.9 12.5 58 19-85 108-166 (293)
138 cd06562 GH20_HexA_HexB-like Be 56.9 2.1E+02 0.0046 30.0 13.2 66 15-82 11-89 (348)
139 PLN02561 triosephosphate isome 56.5 82 0.0018 31.8 9.6 90 29-130 80-195 (253)
140 PRK09856 fructoselysine 3-epim 56.1 17 0.00037 36.0 4.7 58 25-83 91-149 (275)
141 PLN02877 alpha-amylase/limit d 55.3 23 0.00049 42.3 6.1 19 64-82 467-485 (970)
142 KOG0259 Tyrosine aminotransfer 54.4 15 0.00033 39.2 4.1 61 18-82 177-238 (447)
143 cd00311 TIM Triosephosphate is 54.3 22 0.00049 35.5 5.2 50 29-84 76-125 (242)
144 COG3623 SgaU Putative L-xylulo 54.1 52 0.0011 33.1 7.5 90 23-134 17-108 (287)
145 PF02228 Gag_p19: Major core p 53.9 6.1 0.00013 32.8 0.9 39 23-78 21-59 (92)
146 PF12876 Cellulase-like: Sugar 53.3 25 0.00054 29.1 4.6 43 139-181 8-63 (88)
147 cd06563 GH20_chitobiase-like T 53.2 79 0.0017 33.2 9.3 61 17-82 13-105 (357)
148 PRK12331 oxaloacetate decarbox 53.1 33 0.00072 37.4 6.7 55 16-82 88-142 (448)
149 TIGR00419 tim triosephosphate 52.9 25 0.00054 34.4 5.1 81 29-125 73-161 (205)
150 PF14307 Glyco_tran_WbsX: Glyc 52.5 1.6E+02 0.0034 30.8 11.4 39 2-43 154-194 (345)
151 PF01055 Glyco_hydro_31: Glyco 51.8 25 0.00055 37.6 5.5 69 22-91 41-111 (441)
152 cd06597 GH31_transferase_CtsY 51.2 37 0.00081 35.5 6.5 73 16-88 13-110 (340)
153 COG0366 AmyA Glycosidases [Car 51.2 28 0.00061 37.3 5.7 55 28-82 33-96 (505)
154 PRK08673 3-deoxy-7-phosphohept 51.0 50 0.0011 34.8 7.3 75 2-83 87-164 (335)
155 cd01299 Met_dep_hydrolase_A Me 50.7 42 0.00091 34.2 6.7 59 23-82 119-179 (342)
156 COG1735 Php Predicted metal-de 50.6 69 0.0015 33.3 8.0 121 28-183 52-173 (316)
157 COG1306 Uncharacterized conser 50.4 38 0.00083 35.2 6.1 63 17-83 71-144 (400)
158 PRK12858 tagatose 1,6-diphosph 49.8 19 0.00041 37.9 4.0 65 15-82 98-162 (340)
159 PRK09432 metF 5,10-methylenete 49.6 43 0.00092 34.5 6.5 90 29-134 168-267 (296)
160 cd06570 GH20_chitobiase-like_1 48.3 1.5E+02 0.0033 30.7 10.3 62 21-82 15-87 (311)
161 COG5309 Exo-beta-1,3-glucanase 48.3 1.9E+02 0.0041 29.8 10.5 196 20-273 58-279 (305)
162 PLN02784 alpha-amylase 48.1 41 0.0009 39.6 6.6 56 27-82 524-587 (894)
163 PRK13209 L-xylulose 5-phosphat 47.9 1.2E+02 0.0027 30.0 9.5 106 20-154 53-163 (283)
164 COG3589 Uncharacterized conser 47.4 35 0.00077 35.9 5.4 72 12-90 4-76 (360)
165 TIGR00433 bioB biotin syntheta 47.3 29 0.00063 34.9 4.8 52 27-81 123-176 (296)
166 TIGR02455 TreS_stutzeri trehal 45.9 46 0.00099 38.1 6.4 74 23-100 77-175 (688)
167 cd06568 GH20_SpHex_like A subg 45.5 50 0.0011 34.4 6.3 61 22-82 16-94 (329)
168 PRK13210 putative L-xylulose 5 45.5 32 0.00068 34.1 4.7 59 24-83 94-153 (284)
169 PRK15492 triosephosphate isome 45.5 40 0.00086 34.2 5.4 50 29-84 86-135 (260)
170 PF13380 CoA_binding_2: CoA bi 45.4 56 0.0012 28.6 5.8 44 21-80 63-106 (116)
171 PRK01060 endonuclease IV; Prov 45.3 1.4E+02 0.0031 29.5 9.4 62 22-84 45-111 (281)
172 cd04882 ACT_Bt0572_2 C-termina 45.3 47 0.001 24.8 4.7 55 23-79 10-64 (65)
173 PF04914 DltD_C: DltD C-termin 45.2 15 0.00032 33.4 2.1 28 63-91 36-63 (130)
174 PRK09997 hydroxypyruvate isome 44.9 29 0.00063 34.2 4.4 59 24-83 85-144 (258)
175 PRK08645 bifunctional homocyst 44.3 90 0.0019 35.4 8.6 111 7-133 461-579 (612)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.2 68 0.0015 32.4 6.8 51 20-82 87-137 (275)
177 cd00537 MTHFR Methylenetetrahy 41.9 99 0.0021 31.0 7.7 91 28-133 151-250 (274)
178 PRK10658 putative alpha-glucos 41.7 80 0.0017 36.3 7.7 69 21-89 280-351 (665)
179 TIGR00587 nfo apurinic endonuc 41.5 3.8E+02 0.0081 26.8 13.2 85 27-134 14-100 (274)
180 PRK10076 pyruvate formate lyas 41.1 1.7E+02 0.0038 28.5 9.0 22 156-178 190-211 (213)
181 COG1523 PulA Type II secretory 40.7 41 0.00089 38.8 5.1 53 30-82 206-284 (697)
182 PRK10422 lipopolysaccharide co 40.5 67 0.0014 33.2 6.4 23 19-41 197-219 (352)
183 PRK14567 triosephosphate isome 40.2 54 0.0012 33.1 5.4 49 30-84 78-126 (253)
184 TIGR00542 hxl6Piso_put hexulos 40.2 46 0.001 33.1 5.0 58 25-83 95-153 (279)
185 smart00518 AP2Ec AP endonuclea 40.0 66 0.0014 31.8 6.0 73 7-81 25-102 (273)
186 PF00728 Glyco_hydro_20: Glyco 39.9 50 0.0011 33.9 5.3 58 22-82 16-92 (351)
187 smart00481 POLIIIAc DNA polyme 39.8 1E+02 0.0022 23.7 5.9 46 24-82 15-60 (67)
188 cd06416 GH25_Lys1-like Lys-1 i 39.8 57 0.0012 30.9 5.3 86 14-102 56-156 (196)
189 TIGR03234 OH-pyruv-isom hydrox 39.7 37 0.0008 33.3 4.1 59 24-83 84-143 (254)
190 TIGR02635 RhaI_grampos L-rhamn 39.2 5.1E+02 0.011 27.7 13.4 87 23-134 39-128 (378)
191 PLN02231 alanine transaminase 39.1 1E+02 0.0022 34.3 7.9 59 20-82 252-310 (534)
192 PF07905 PucR: Purine cataboli 38.9 1.5E+02 0.0033 26.0 7.6 66 4-83 40-106 (123)
193 cd06594 GH31_glucosidase_YihQ 38.8 1.1E+02 0.0023 31.7 7.5 68 22-89 21-97 (317)
194 PRK14566 triosephosphate isome 38.8 53 0.0011 33.3 5.1 50 29-84 87-136 (260)
195 TIGR01698 PUNP purine nucleoti 38.4 53 0.0011 32.9 5.0 41 3-43 47-88 (237)
196 PLN02763 hydrolase, hydrolyzin 38.3 86 0.0019 37.6 7.4 74 16-90 190-268 (978)
197 cd07381 MPP_CapA CapA and rela 37.8 3.9E+02 0.0084 25.9 11.0 130 27-178 67-212 (239)
198 PRK14040 oxaloacetate decarbox 37.7 68 0.0015 36.4 6.2 54 16-81 89-142 (593)
199 COG0149 TpiA Triosephosphate i 37.2 60 0.0013 32.8 5.1 50 29-84 80-129 (251)
200 cd00019 AP2Ec AP endonuclease 35.8 36 0.00079 33.9 3.4 60 24-84 85-144 (279)
201 COG3684 LacD Tagatose-1,6-bisp 35.7 26 0.00057 35.6 2.3 52 29-83 116-167 (306)
202 KOG2024 Beta-Glucuronidase GUS 35.5 47 0.001 33.9 4.0 47 372-418 69-128 (297)
203 PF06832 BiPBP_C: Penicillin-B 34.9 44 0.00096 27.6 3.3 67 384-463 18-84 (89)
204 smart00854 PGA_cap Bacterial c 34.1 4.5E+02 0.0098 25.6 12.1 134 19-179 59-211 (239)
205 KOG1065 Maltase glucoamylase a 34.0 75 0.0016 37.1 5.8 70 16-90 300-378 (805)
206 PF01075 Glyco_transf_9: Glyco 34.0 34 0.00074 33.1 2.8 74 9-85 108-194 (247)
207 PRK14905 triosephosphate isome 33.6 2.6E+02 0.0057 29.6 9.5 91 29-130 87-205 (355)
208 PLN02389 biotin synthase 33.4 57 0.0012 34.8 4.6 51 27-80 178-230 (379)
209 PLN02607 1-aminocyclopropane-1 33.3 1.5E+02 0.0032 32.1 7.9 60 19-82 180-239 (447)
210 KOG1412 Aspartate aminotransfe 33.3 91 0.002 32.8 5.7 48 22-78 131-178 (410)
211 PRK04302 triosephosphate isome 33.2 85 0.0018 30.6 5.5 59 16-85 62-123 (223)
212 PF05089 NAGLU: Alpha-N-acetyl 33.2 3.3E+02 0.0071 28.8 9.9 214 21-264 16-299 (333)
213 TIGR02690 resist_ArsH arsenica 33.2 4.9E+02 0.011 25.7 12.9 148 8-170 28-195 (219)
214 PF10566 Glyco_hydro_97: Glyco 32.8 1.1E+02 0.0024 31.3 6.3 60 22-82 30-92 (273)
215 PLN02540 methylenetetrahydrofo 32.7 91 0.002 35.2 6.1 91 29-134 161-260 (565)
216 PRK13125 trpA tryptophan synth 32.7 82 0.0018 31.2 5.3 58 12-84 79-137 (244)
217 cd07944 DRE_TIM_HOA_like 4-hyd 32.5 69 0.0015 32.3 4.8 44 27-82 85-128 (266)
218 PRK09248 putative hydrolase; V 32.5 1.2E+02 0.0027 29.8 6.5 65 9-85 94-162 (246)
219 cd06418 GH25_BacA-like BacA is 31.9 1.9E+02 0.0042 28.2 7.7 123 22-184 50-173 (212)
220 PTZ00372 endonuclease 4-like p 31.3 7.1E+02 0.015 27.1 12.5 91 26-147 143-239 (413)
221 TIGR02201 heptsyl_trn_III lipo 30.8 98 0.0021 31.7 5.7 65 18-85 194-271 (344)
222 cd06547 GH85_ENGase Endo-beta- 30.5 2.2E+02 0.0049 29.9 8.3 87 17-134 42-138 (339)
223 PF04909 Amidohydro_2: Amidohy 30.4 1.3E+02 0.0029 28.9 6.3 156 10-184 72-234 (273)
224 PF11324 DUF3126: Protein of u 30.3 58 0.0013 26.0 3.0 23 405-436 24-46 (63)
225 PRK14042 pyruvate carboxylase 30.3 1.1E+02 0.0024 34.8 6.3 53 18-82 90-142 (596)
226 PTZ00372 endonuclease 4-like p 30.0 1.2E+02 0.0025 33.0 6.2 80 4-84 153-240 (413)
227 TIGR02193 heptsyl_trn_I lipopo 29.8 1.3E+02 0.0027 30.5 6.3 73 9-85 182-265 (319)
228 PF07755 DUF1611: Protein of u 29.7 36 0.00078 35.3 2.2 58 8-80 34-91 (301)
229 TIGR03128 RuMP_HxlA 3-hexulose 29.6 1.2E+02 0.0025 28.8 5.7 52 14-82 57-108 (206)
230 COG1891 Uncharacterized protei 29.2 21 0.00045 34.3 0.4 66 9-82 116-186 (235)
231 PRK06703 flavodoxin; Provision 29.2 3.4E+02 0.0074 24.3 8.4 98 7-133 49-149 (151)
232 TIGR03551 F420_cofH 7,8-dideme 29.1 48 0.001 34.5 3.1 49 27-79 141-195 (343)
233 cd00958 DhnA Class I fructose- 28.8 73 0.0016 31.0 4.2 63 14-82 65-128 (235)
234 cd04883 ACT_AcuB C-terminal AC 28.7 1.9E+02 0.004 22.1 5.8 57 23-80 12-69 (72)
235 PLN02450 1-aminocyclopropane-1 28.7 1.3E+02 0.0029 32.6 6.5 59 20-82 172-230 (468)
236 PRK07094 biotin synthase; Prov 28.6 48 0.001 34.0 3.0 50 27-79 129-181 (323)
237 cd03789 GT1_LPS_heptosyltransf 28.5 88 0.0019 31.0 4.8 73 12-87 127-211 (279)
238 PRK00870 haloalkane dehalogena 28.4 1.1E+02 0.0024 30.4 5.5 82 6-99 46-130 (302)
239 PF00155 Aminotran_1_2: Aminot 28.4 73 0.0016 32.5 4.3 61 18-82 127-187 (363)
240 PRK09250 fructose-bisphosphate 28.2 64 0.0014 34.1 3.8 47 30-82 152-198 (348)
241 TIGR03700 mena_SCO4494 putativ 27.9 49 0.0011 34.6 2.9 50 27-79 150-204 (351)
242 PRK09875 putative hydrolase; P 27.8 1.7E+02 0.0036 30.2 6.7 63 23-102 33-95 (292)
243 PTZ00377 alanine aminotransfer 27.8 2.3E+02 0.005 30.8 8.2 60 19-82 198-257 (481)
244 COG2179 Predicted hydrolase of 27.7 1.3E+02 0.0028 28.8 5.3 45 29-82 19-68 (175)
245 PF03644 Glyco_hydro_85: Glyco 27.7 1.2E+02 0.0026 31.5 5.7 116 39-183 27-146 (311)
246 KOG0805 Carbon-nitrogen hydrol 27.6 1.5E+02 0.0033 30.1 6.0 78 64-150 38-122 (337)
247 PF00121 TIM: Triosephosphate 27.6 28 0.0006 34.9 1.0 50 29-84 76-125 (244)
248 PRK12581 oxaloacetate decarbox 27.5 1.4E+02 0.0029 33.0 6.3 61 16-92 97-157 (468)
249 PRK10964 ADP-heptose:LPS hepto 27.4 1.1E+02 0.0025 31.0 5.5 76 7-85 178-264 (322)
250 PRK13962 bifunctional phosphog 27.2 91 0.002 35.7 5.0 50 29-84 473-522 (645)
251 PF08821 CGGC: CGGC domain; I 27.0 2.1E+02 0.0047 25.0 6.3 60 14-82 42-105 (107)
252 PRK08227 autoinducer 2 aldolas 26.8 74 0.0016 32.4 3.9 47 29-81 99-145 (264)
253 TIGR02427 protocat_pcaD 3-oxoa 26.8 1.3E+02 0.0029 27.4 5.5 81 6-99 12-94 (251)
254 TIGR02195 heptsyl_trn_II lipop 26.7 1.5E+02 0.0033 30.2 6.2 38 6-43 173-213 (334)
255 KOG0470 1,4-alpha-glucan branc 26.5 72 0.0016 36.8 4.0 57 27-83 258-331 (757)
256 COG1168 MalY Bifunctional PLP- 26.4 45 0.00098 35.6 2.3 87 3-95 104-207 (388)
257 TIGR01752 flav_long flavodoxin 26.2 3.6E+02 0.0079 24.8 8.2 115 7-131 45-166 (167)
258 cd04726 KGPDC_HPS 3-Keto-L-gul 26.1 1.6E+02 0.0036 27.5 6.0 46 29-87 69-115 (202)
259 PRK12330 oxaloacetate decarbox 26.1 1.5E+02 0.0032 33.0 6.3 53 18-82 91-143 (499)
260 PRK08599 coproporphyrinogen II 26.1 57 0.0012 34.3 3.1 60 12-78 89-151 (377)
261 PF01120 Alpha_L_fucos: Alpha- 26.1 7.7E+02 0.017 25.7 13.9 143 20-179 90-242 (346)
262 KOG0471 Alpha-amylase [Carbohy 26.1 98 0.0021 34.7 5.0 63 27-89 43-114 (545)
263 KOG4039 Serine/threonine kinas 26.0 73 0.0016 31.0 3.4 67 18-89 103-172 (238)
264 PRK08195 4-hyroxy-2-oxovalerat 26.0 1.1E+02 0.0025 31.9 5.2 43 28-82 92-134 (337)
265 cd04886 ACT_ThrD-II-like C-ter 25.5 2.8E+02 0.0061 20.5 6.9 58 23-80 9-72 (73)
266 PF03851 UvdE: UV-endonuclease 25.4 7.4E+02 0.016 25.4 10.8 116 30-170 51-172 (275)
267 TIGR01108 oadA oxaloacetate de 25.4 1.6E+02 0.0035 33.4 6.5 54 17-82 84-137 (582)
268 KOG0622 Ornithine decarboxylas 25.4 1.3E+02 0.0027 32.8 5.3 63 21-84 190-253 (448)
269 PF00834 Ribul_P_3_epim: Ribul 25.3 2.1E+02 0.0046 27.7 6.6 85 29-132 72-161 (201)
270 TIGR03217 4OH_2_O_val_ald 4-hy 25.2 1.3E+02 0.0028 31.5 5.4 43 28-82 91-133 (333)
271 cd06545 GH18_3CO4_chitinase Th 25.2 3.2E+02 0.007 26.8 8.1 109 33-170 18-130 (253)
272 CHL00200 trpA tryptophan synth 25.1 1.3E+02 0.0028 30.5 5.3 43 27-83 109-151 (263)
273 cd06167 LabA_like LabA_like pr 24.7 1.7E+02 0.0037 25.9 5.5 58 24-82 52-129 (149)
274 PF00120 Gln-synt_C: Glutamine 24.6 1.5E+02 0.0034 29.4 5.7 61 23-88 68-140 (259)
275 PRK02412 aroD 3-dehydroquinate 24.5 1E+02 0.0023 30.8 4.4 32 14-45 140-173 (253)
276 PF03102 NeuB: NeuB family; I 24.1 1.1E+02 0.0024 30.6 4.5 25 20-44 52-76 (241)
277 PRK09282 pyruvate carboxylase 24.0 1.4E+02 0.0031 33.7 5.9 55 16-82 88-142 (592)
278 COG2360 Aat Leu/Phe-tRNA-prote 23.9 1E+02 0.0022 30.4 4.1 101 54-166 74-205 (221)
279 PF09587 PGA_cap: Bacterial ca 23.9 6E+02 0.013 24.9 9.7 78 2-87 124-227 (250)
280 PLN02376 1-aminocyclopropane-1 23.8 1.9E+02 0.0042 31.8 6.7 60 19-82 179-238 (496)
281 KOG3625 Alpha amylase [Carbohy 23.5 80 0.0017 37.6 3.7 56 22-80 140-214 (1521)
282 PRK12595 bifunctional 3-deoxy- 23.5 3.2E+02 0.0069 29.0 8.0 57 23-83 131-189 (360)
283 cd06525 GH25_Lyc-like Lyc mura 23.5 49 0.0011 31.1 1.8 40 63-102 103-146 (184)
284 COG1099 Predicted metal-depend 23.2 37 0.0008 33.9 0.9 55 27-84 14-71 (254)
285 COG3572 GshA Gamma-glutamylcys 23.1 3E+02 0.0064 29.9 7.5 93 50-166 93-198 (456)
286 cd07944 DRE_TIM_HOA_like 4-hyd 23.1 2E+02 0.0044 28.9 6.3 144 18-184 14-161 (266)
287 TIGR01361 DAHP_synth_Bsub phos 23.1 1.9E+02 0.0041 29.2 6.0 73 4-83 21-96 (260)
288 PF08924 DUF1906: Domain of un 22.7 2.1E+02 0.0046 25.9 5.7 88 22-134 36-128 (136)
289 PF07071 DUF1341: Protein of u 22.6 1.2E+02 0.0026 29.9 4.2 46 26-83 137-182 (218)
290 PF05763 DUF835: Protein of un 22.4 2.5E+02 0.0054 25.6 6.1 112 55-183 1-120 (136)
291 TIGR01210 conserved hypothetic 22.3 1.9E+02 0.0041 29.8 6.0 50 22-76 153-202 (313)
292 PF08308 PEGA: PEGA domain; I 21.9 1E+02 0.0022 24.0 3.1 10 409-418 11-20 (71)
293 TIGR03699 mena_SCO4550 menaqui 21.9 61 0.0013 33.5 2.3 50 27-79 143-197 (340)
294 TIGR03581 EF_0839 conserved hy 21.8 1.8E+02 0.0039 28.9 5.3 46 26-83 137-182 (236)
295 TIGR03025 EPS_sugtrans exopoly 21.7 3.3E+02 0.0071 29.2 7.9 55 27-96 178-232 (445)
296 cd04740 DHOD_1B_like Dihydroor 21.7 2.9E+02 0.0064 27.8 7.2 62 22-84 100-162 (296)
297 TIGR00587 nfo apurinic endonuc 21.6 1.6E+02 0.0035 29.4 5.3 77 7-84 26-110 (274)
298 PF02606 LpxK: Tetraacyldisacc 21.6 2.1E+02 0.0046 29.9 6.2 57 4-76 225-281 (326)
299 PF11340 DUF3142: Protein of u 21.5 1.9E+02 0.0042 27.8 5.3 57 123-182 25-81 (181)
300 PRK15108 biotin synthase; Prov 21.5 1.2E+02 0.0027 31.7 4.4 45 27-79 136-187 (345)
301 cd06542 GH18_EndoS-like Endo-b 21.4 5.3E+02 0.011 25.2 8.8 85 64-174 52-143 (255)
302 TIGR01210 conserved hypothetic 21.3 1.3E+02 0.0028 31.0 4.6 63 12-82 106-174 (313)
303 cd06569 GH20_Sm-chitobiase-lik 21.2 3.1E+02 0.0066 30.0 7.5 63 15-82 15-116 (445)
304 cd07943 DRE_TIM_HOA 4-hydroxy- 21.1 1.5E+02 0.0033 29.5 4.9 43 28-82 89-131 (263)
305 KOG1643 Triosephosphate isomer 20.9 1.3E+02 0.0028 29.8 4.0 79 30-135 79-157 (247)
306 COG1082 IolE Sugar phosphate i 20.9 7.7E+02 0.017 23.8 13.1 119 26-178 17-144 (274)
307 PRK11572 copper homeostasis pr 20.8 1.4E+02 0.003 30.2 4.5 60 12-81 61-120 (248)
308 PRK12999 pyruvate carboxylase; 20.7 1.7E+02 0.0036 36.0 5.9 58 17-90 620-677 (1146)
309 PLN03132 NADH dehydrogenase (u 20.6 1.3E+02 0.0027 33.2 4.4 60 23-91 134-207 (461)
310 PRK10124 putative UDP-glucose 20.5 5.3E+02 0.011 28.1 9.3 68 26-105 192-264 (463)
311 cd03334 Fab1_TCP TCP-1 like do 20.4 4.4E+02 0.0094 26.4 8.0 61 6-83 86-159 (261)
312 PRK07432 5'-methylthioadenosin 20.4 96 0.0021 32.0 3.3 39 3-43 43-85 (290)
313 TIGR00514 accC acetyl-CoA carb 20.2 1.9E+02 0.0042 31.0 5.8 55 27-82 15-80 (449)
314 cd01019 ZnuA Zinc binding prot 20.2 1.6E+02 0.0034 29.9 4.8 43 32-82 192-234 (286)
315 PF00282 Pyridoxal_deC: Pyrido 20.1 1.9E+02 0.0042 30.5 5.6 70 6-82 140-230 (373)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=4.4e-123 Score=1023.13 Aligned_cols=445 Identities=29% Similarity=0.490 Sum_probs=379.7
Q ss_pred CceecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
.|+|||||++|+||+|||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 36 ~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvi 115 (840)
T PLN03059 36 AFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVH 115 (840)
T ss_pred EEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhc--cccccCCCCeEEEcccCccCCc----
Q 011211 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA--PLLYDIGGPIVMVQIENEFGSY---- 154 (491)
Q Consensus 81 lrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~--~~~~~~gGpII~~QiENEyg~~---- 154 (491)
|||||||||||++||+|.||++++ .|++||+||+|+++|++|+++|+++|+ ++++++||||||+|||||||+|
T Consensus 116 lRpGPYIcAEw~~GGlP~WL~~~~-~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~ 194 (840)
T PLN03059 116 LRIGPYICAEWNFGGFPVWLKYVP-GIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEI 194 (840)
T ss_pred ecCCcceeeeecCCCCchhhhcCC-CcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceeccc
Confidence 999999999999999999999874 599999999999999999999999996 7889999999999999999998
Q ss_pred -CCcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCCccCCeeeeecCCCCCCCCchhHHhhhhhcCCCCCCCccee
Q 011211 155 -GDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSE 233 (491)
Q Consensus 155 -~~~~~y~~~l~~~~~~~~G~~vpl~t~d~~~~~~~~~g~~~~~d~~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E 233 (491)
++|++||+||++++++. |++|||||||++. .+++ ++.|+| +. ..+.|..+ ...+|+||||
T Consensus 195 ~~~d~~Yl~~l~~~~~~~-Gi~VPl~t~dg~~-------~~~~--v~~t~N-g~---~~~~f~~~-----~~~~P~m~tE 255 (840)
T PLN03059 195 GAPGKAYTKWAADMAVKL-GTGVPWVMCKQED-------APDP--VIDTCN-GF---YCENFKPN-----KDYKPKMWTE 255 (840)
T ss_pred CcchHHHHHHHHHHHHHc-CCCcceEECCCCC-------CCcc--ceecCC-Cc---hhhhcccC-----CCCCCcEEec
Confidence 67999999999999997 9999999999862 2333 787777 21 22334321 1236999999
Q ss_pred eccccccccCCCCCCCCHHHHHHHHHHHHHhCCc-eeeeeeccccCCCCCCCCCCCCCCCCCCCCccccCCCCccCCCCC
Q 011211 234 FYTGWLTHWGEKIAKTDADFTASYLEKILSQNGS-AVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGD 312 (491)
Q Consensus 234 f~~GWfd~WG~~~~~~~~~~~~~~l~~~l~~~~s-~n~YM~hGGTNfG~~~Gan~~~~~~~~~p~~TSYDYdApl~E~G~ 312 (491)
||+|||++||++++.+++++++..+++|++.++| +||||||||||||||+|++ + ++|||||||||+|+|+
T Consensus 256 ~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~-------~--~~TSYDYdAPL~E~G~ 326 (840)
T PLN03059 256 AWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGP-------F--IATSYDYDAPLDEYGL 326 (840)
T ss_pred cCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCC-------c--cccccccCCccccccC
Confidence 9999999999999999999999999999999988 6999999999999999986 2 5799999999999999
Q ss_pred CChHHHHHHHHHHHhhC--CCCCCCCCC-CC-----------C--------ccccc---ceeec----------------
Q 011211 313 VDNPKFKAIRRVVEKFS--PASLPSVLP-DN-----------E--------KAGFG---PIQLQ---------------- 351 (491)
Q Consensus 313 ~t~pKy~~lr~~i~~~~--~~~~p~~P~-~~-----------~--------~~~yg---~v~l~---------------- 351 (491)
+|+|||.+||++|+++. ...++..|+ .. + .++|+ ++.++
T Consensus 327 ~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsil 406 (840)
T PLN03059 327 PREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSIL 406 (840)
T ss_pred cchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeec
Confidence 99889999999999983 223333332 11 2 45666 66666
Q ss_pred --cccchhhhhhc------c--CCC----------Cccc---cCCCCchhhc-------cCccceEEEEEeeCCCCCC--
Q 011211 352 --KTALLFDLLDV------L--DPA----------DVVE---SENPLSMESV-------GQMFGFLLYVSEFGGKDYG-- 399 (491)
Q Consensus 352 --~~~~L~~~l~~------~--~~~----------~~~~---s~~P~~mE~l-------gQ~~GyvlY~t~i~~~~~~-- 399 (491)
...+||++++. + .+. +++. ++.|++||+| +|.+||+||+|+|......
T Consensus 407 pd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~ 486 (840)
T PLN03059 407 PDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGF 486 (840)
T ss_pred ccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccc
Confidence 56788888875 2 111 0112 3349999999 9999999999999765332
Q ss_pred ------cceecCCcccEEEEEeCCccCCCCCCCceEEEEEecc-CcceeecC--CCCCCCcEEEEEEEeCCccccCCCC-
Q 011211 400 ------SSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPN--FRCGSNISLFVLVENMGRVNYGPYM- 469 (491)
Q Consensus 400 ------~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~-~~~~~~~~--~~~~~~~~L~ILVEN~GRvNyg~~~- 469 (491)
.+|++..++|+|+|||||+ ++|++.+.. ...+.++. .-..+.++|+||||||||+|||+.+
T Consensus 487 ~~~~~~~~L~v~~~~d~~~vFVNg~---------~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le 557 (840)
T PLN03059 487 LKTGQYPVLTIFSAGHALHVFINGQ---------LAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFE 557 (840)
T ss_pred cccCCCceEEEcccCcEEEEEECCE---------EEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccc
Confidence 2489999999999999999 999998843 34455541 0013567999999999999999999
Q ss_pred CCCCCcccCceecc
Q 011211 470 FDEKGILQKNLHSM 483 (491)
Q Consensus 470 ~d~KGi~g~V~~~~ 483 (491)
.++|||+|+|+++.
T Consensus 558 ~~~kGI~g~V~i~g 571 (840)
T PLN03059 558 TWNAGVLGPVTLKG 571 (840)
T ss_pred cccccccccEEEec
Confidence 56999999999976
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-104 Score=847.59 Aligned_cols=462 Identities=34% Similarity=0.518 Sum_probs=397.6
Q ss_pred CceecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
+|++||+|++++||++||+|++|++|+++|+|+|++|+|+|+||||||.|||+||+|||+|+.||++||++|++.||+||
T Consensus 26 ~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~ 105 (649)
T KOG0496|consen 26 SLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVI 105 (649)
T ss_pred ceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHH
Q 011211 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (491)
Q Consensus 81 lrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y 160 (491)
||+||||||||++||+|.||... |.+.+||+|++|++++++|+++|++++++++++|||||||+||||||| .|
T Consensus 106 LRiGPyIcaEw~~GG~P~wL~~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG------~~ 178 (649)
T KOG0496|consen 106 LRIGPYICAEWNFGGLPWWLRNV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG------NY 178 (649)
T ss_pred ecCCCeEEecccCCCcchhhhhC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh------HH
Confidence 99999999999999999777776 559999999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCcccccCCCccCCeeeeecCCCCCCCCchhHHhhhhhcCCCCCCCcceeecccccc
Q 011211 161 LHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLT 240 (491)
Q Consensus 161 ~~~l~~~~~~~~G~~vpl~t~d~~~~~~~~~g~~~~~d~~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~Ef~~GWfd 240 (491)
.+++.++.+++++-++.++++++.....++|++....|.. +|.+++-.. .+..++.. ++++|+||||+|+|||+
T Consensus 179 ~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~--in~cng~~c--~~~f~~pn--~~~kP~~wtE~wtgwf~ 252 (649)
T KOG0496|consen 179 LRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPG--INTCNGFYC--GDTFKRPN--SPNKPLVWTENWTGWFT 252 (649)
T ss_pred HHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCcc--ccccCCccc--hhhhccCC--CCCCCceecccccchhh
Confidence 8899999999989899999999987778999987643333 454444222 22222232 34569999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhC-CceeeeeeccccCCCCCCC---CCCCC------------CCCCCCCCccccCCC
Q 011211 241 HWGEKIAKTDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNG---ANTGN------------TESDYQPDLTSYDYD 304 (491)
Q Consensus 241 ~WG~~~~~~~~~~~~~~l~~~l~~~-~s~n~YM~hGGTNfG~~~G---an~~~------------~~~~~~p~~TSYDYd 304 (491)
+||++++.|++++++..+..+++.+ +++||||+|||||||+||| ++... ..+++.+.+|||||+
T Consensus 253 ~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~dgl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 253 HWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLDGLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccchhhcCCCccccccchhhhhhc
Confidence 9999999999999999999999987 8899999999999999999 65311 024477899999999
Q ss_pred CccCCCCCCChHHHHHHH----HHHHhhCCCCCCCCCCCCCcccccceeeccccchhhhhhccCCCC--ccccCCCCchh
Q 011211 305 APIKESGDVDNPKFKAIR----RVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDVLDPAD--VVESENPLSME 378 (491)
Q Consensus 305 Apl~E~G~~t~pKy~~lr----~~i~~~~~~~~p~~P~~~~~~~yg~v~l~~~~~L~~~l~~~~~~~--~~~s~~P~~mE 378 (491)
||+.|+|+++-+||.++| .+|+.+.+.+.+++|...++..++++++.-.-+++..+-..++.. ...+..|+++|
T Consensus 333 ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~~~~~~e~~~~~ 412 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQWISFTEPIPSE 412 (649)
T ss_pred CccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccccccccCCCccc
Confidence 999999995556999999 888888888889999999999999999998877777664443222 35788999999
Q ss_pred hccCccceEEEEEeeCCCCC-CcceecC-CcccEEEEEeCCccCCCCCCCceEEEEEecc-Ccceeec--CCCCCCCcEE
Q 011211 379 SVGQMFGFLLYVSEFGGKDY-GSSLLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLP--NFRCGSNISL 453 (491)
Q Consensus 379 ~lgQ~~GyvlY~t~i~~~~~-~~~L~~~-~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~-~~~~~~~--~~~~~~~~~L 453 (491)
..+|.+||+||+|.++.+.+ .+.|+|+ .++|++||||||+ ++|++.+.. ...+.+. ..-..+.++|
T Consensus 413 ~~~~~~~~ll~~~~~t~d~sd~t~~~i~ls~g~~~hVfvNg~---------~~G~~~g~~~~~~~~~~~~~~l~~g~n~l 483 (649)
T KOG0496|consen 413 AVGQSFGGLLEQTNLTKDKSDTTSLKIPLSLGHALHVFVNGE---------FAGSLHGNNEKIKLNLSQPVGLKAGENKL 483 (649)
T ss_pred cccCcceEEEEEEeeccccCCCceEeecccccceEEEEECCE---------EeeeEeccccceeEEeecccccccCcceE
Confidence 99999999999999877633 3568898 9999999999999 999998844 2223321 1101246899
Q ss_pred EEEEEeCCccccCCCCCCCCCcccCceeccc
Q 011211 454 FVLVENMGRVNYGPYMFDEKGILQKNLHSML 484 (491)
Q Consensus 454 ~ILVEN~GRvNyg~~~~d~KGi~g~V~~~~~ 484 (491)
+|||||+||+|||...+++|||+|+|+++..
T Consensus 484 ~iL~~~~G~~n~G~~e~~~~Gi~g~v~l~g~ 514 (649)
T KOG0496|consen 484 ALLSENVGLPNYGHFENDFKGILGPVYLNGL 514 (649)
T ss_pred EEEEEecCCCCcCcccccccccccceEEeee
Confidence 9999999999999666889999999999876
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.2e-101 Score=788.43 Aligned_cols=318 Identities=50% Similarity=0.932 Sum_probs=258.1
Q ss_pred CceecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
+|+|||||++|+|||+||||+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHH
Q 011211 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (491)
Q Consensus 81 lrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y 160 (491)
|||||||||||++||+|.||++++ ++++||+||.|+++|++|+++|+++++++|+++||||||+|||||||+++++++|
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~-~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~~~~~Y 159 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKP-DIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYGTDRAY 159 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGST-TS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTSS-HHH
T ss_pred ecccceecccccchhhhhhhhccc-cccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCcccHhH
Confidence 999999999999999999999986 4899999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHhcCCc-eEEEEecCCCcccccCCCccCCeeeeecCCCCCCCCchhHHhhhhhcCCCCCCCcceeeccccc
Q 011211 161 LHHLVTLARAHLGKD-IILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWL 239 (491)
Q Consensus 161 ~~~l~~~~~~~~G~~-vpl~t~d~~~~~~~~~g~~~~~d~~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~Ef~~GWf 239 (491)
|+.|++++++. |++ ++++|+|++......++.+++.+++.+.+|+++.++.+.|..++++++. +|+|++|||+|||
T Consensus 160 ~~~l~~~~~~~-g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~P~~~~E~~~Gwf 236 (319)
T PF01301_consen 160 MEALKDAYRDW-GIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPN--QPLMCTEFWGGWF 236 (319)
T ss_dssp HHHHHHHHHHT-T-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTT--S--EEEEEESS--
T ss_pred HHHHHHHHHHh-hCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCC--CCeEEEEeccccc
Confidence 99999999998 776 8899999986667788888886699999999875445677777777655 4999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeccccCCCCCCCCCCCCCCCCCCCCccccCCCCccCCCCCCChHHHH
Q 011211 240 THWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFK 319 (491)
Q Consensus 240 d~WG~~~~~~~~~~~~~~l~~~l~~~~s~n~YM~hGGTNfG~~~Gan~~~~~~~~~p~~TSYDYdApl~E~G~~t~pKy~ 319 (491)
++||++++.+++++++..+.+|+++++|+||||||||||||+|+|++..+ +|++|||||+|||+|+|++|+ ||.
T Consensus 237 ~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~-----~p~~TSYDY~ApI~E~G~~~~-Ky~ 310 (319)
T PF01301_consen 237 DHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYG-----QPDITSYDYDAPIDEYGQLTP-KYY 310 (319)
T ss_dssp -BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTT-----EEB-SB--TT-SB-TTS-B-H-HHH
T ss_pred cccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCC-----CCCcccCCcCCccCcCCCcCH-HHH
Confidence 99999999999999999999999999999999999999999999998532 789999999999999999996 999
Q ss_pred HHHHHHHhh
Q 011211 320 AIRRVVEKF 328 (491)
Q Consensus 320 ~lr~~i~~~ 328 (491)
++|+++++|
T Consensus 311 ~lr~l~~~~ 319 (319)
T PF01301_consen 311 ELRRLHQKY 319 (319)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhcC
Confidence 999999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-43 Score=383.96 Aligned_cols=435 Identities=21% Similarity=0.228 Sum_probs=281.0
Q ss_pred CceecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
.|.+||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. ||++|++.||+|
T Consensus 7 ~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~~Gl~v 84 (673)
T COG1874 7 SFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYKAGLYV 84 (673)
T ss_pred ceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHhcCceE
Confidence 3789999999999999999999999999999999999999999 99999999999999999 77888 899999999999
Q ss_pred EecCCC-ccccccCCCCCccccccCCCCeeEe---------cCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccC
Q 011211 80 MLRPGP-YICAEWDLGGFPAWLLAKKPALKLR---------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (491)
Q Consensus 80 ilrpGP-yi~aEw~~GGlP~WL~~~~~~~~~R---------s~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiEN 149 (491)
|||||| ..|.+|..+++|.||..+.. -.+| .+++.|++++++ |+++|+++.+.+|++||+||++|
T Consensus 85 il~t~P~g~~P~Wl~~~~PeiL~~~~~-~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~irer~~~~~~~v~~w~~dn 159 (673)
T COG1874 85 ILRTGPTGAPPAWLAKKYPEILAVDEN-GRVRSDGARENICPVSPVYREYLDR----ILQQIRERLYGNGPAVITWQNDN 159 (673)
T ss_pred EEecCCCCCCchHHhcCChhheEecCC-CcccCCCcccccccccHHHHHHHHH----HHHHHHHHHhccCCceeEEEccC
Confidence 999999 99999999999999987643 1222 356778888876 77777777788999999999999
Q ss_pred ccCCcC-----CcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCCccCCeeeeecC-CCCCCCCchhHHhhhhhcC
Q 011211 150 EFGSYG-----DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVD-FSTGAEPWPIFKLQKQFNA 223 (491)
Q Consensus 150 Eyg~~~-----~~~~y~~~l~~~~~~~~G~~vpl~t~d~~~~~~~~~g~~~~~d~~~t~~-f~~~~~~~~~~~~~~~~~~ 223 (491)
|||+|. +++.+..||++.+- .+.+.+......+..++...-+.+.+.+ ++.. .....+-...+|..
T Consensus 160 eY~~~~~~~~~~~~~f~~wLk~~yg-------~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~-~~~~~~ld~~~f~~ 231 (673)
T COG1874 160 EYGGHPCYCDYCQAAFRLWLKKGYG-------SLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGEL-PLPGLYLDYRRFES 231 (673)
T ss_pred ccCCccccccccHHHHHHHHHhCcc-------hHHhhhhhhhhhhcccccccHHhhcCCCCcccc-CCccchhhHhhhhh
Confidence 999953 35666777776662 1222222222334344433211121222 3321 00111111112211
Q ss_pred CC--CCCCcceeeccccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCceeeeeeccccCCC------CCCCCC-CCCCCC
Q 011211 224 PG--KSPPLSSEFYTGWL-THWGEKIAKTD-ADFTASYLEKILSQNGSAVLYMAHGGTNFG------FYNGAN-TGNTES 292 (491)
Q Consensus 224 ~~--~~P~~~~Ef~~GWf-d~WG~~~~~~~-~~~~~~~l~~~l~~~~s~n~YM~hGGTNfG------~~~Gan-~~~~~~ 292 (491)
.. .-+....|.+-+|| +.|..++-... .+.-...+++.+....+-||||||+|++|+ |.+|+. ......
T Consensus 232 e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~swdny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 232 EQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASWDNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhhhhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 10 12667888899999 88887665555 444556677778777778999999999999 898887 222223
Q ss_pred CCCCCccccCCCCccCCCCC---CChHHHHHHHHHHHhhCCCCCCCCCCCCCcccccce--e-eccccchhhhhhccCCC
Q 011211 293 DYQPDLTSYDYDAPIKESGD---VDNPKFKAIRRVVEKFSPASLPSVLPDNEKAGFGPI--Q-LQKTALLFDLLDVLDPA 366 (491)
Q Consensus 293 ~~~p~~TSYDYdApl~E~G~---~t~pKy~~lr~~i~~~~~~~~p~~P~~~~~~~yg~v--~-l~~~~~L~~~l~~~~~~ 366 (491)
..+|..|+|++++.+.+.|. ++- +..+.....-.+.....++-|. . ..-+-+ . +.+...++..+..+.
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~l~s~-~~~A~g~~~v~yf~~r~s~~~~--e-~~h~~v~~~v~~~~~~~~~ev~~vg-- 385 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALRLPSL-QAVAHGADNVIYFQWRQSPSPR--E-KSHDGVISPVLSENTRLFREVAAVG-- 385 (673)
T ss_pred cCCcchhhhhhccCCCCCcccccccc-ccccccCceEEEEEeecCCChH--h-hccCcccccccCccccccchhhhhh--
Confidence 35688999999999999999 554 4433332222222111111111 0 011111 0 222334444332221
Q ss_pred CccccCCCCc--hhhccCccceEEEEEeeCCCCCCcceecCCcccEEEEEeCCccCCCCCCCceEEEEEecc-Ccceeec
Q 011211 367 DVVESENPLS--MESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLP 443 (491)
Q Consensus 367 ~~~~s~~P~~--mE~lgQ~~GyvlY~t~i~~~~~~~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~-~~~~~~~ 443 (491)
+.-++++ ||.-.|.+++++|.+...=. ...+...+.+++.+++.-.+ +.-++-+.. ...+..+
T Consensus 386 ---~~l~~~~~~~~~~~~a~va~~~d~E~~Wa--~~~~~~~~~~~~~Y~~~~~~---------~~~~l~~~~i~vdvi~~ 451 (673)
T COG1874 386 ---EELKSLPDVMEARVQAYVAILFDYESRWA--FEDEDGGESSALRYPFGVLH---------LYEALIETGIPVDVILE 451 (673)
T ss_pred ---HhhhccccccccccccceeEEeecccccc--cccccccccccccchhhhhh---------hHHHHHhhCCceeEecC
Confidence 1123344 88999999999997766421 11233344446666665554 222221111 1112122
Q ss_pred CCCCCCCcEEEE---EEEeCCccccCCCCC
Q 011211 444 NFRCGSNISLFV---LVENMGRVNYGPYMF 470 (491)
Q Consensus 444 ~~~~~~~~~L~I---LVEN~GRvNyg~~~~ 470 (491)
....++-..|.+ .++|++|++.++...
T Consensus 452 ~~~~~~y~~L~~p~l~~~~~~~~~r~~~f~ 481 (673)
T COG1874 452 GSELDGYKLLIVPVLYIVNSERVDRAKKFV 481 (673)
T ss_pred cccccCceEEEEeeeeccchhhHhhHHHHH
Confidence 112234567777 899999999987543
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.89 E-value=8.3e-23 Score=213.31 Aligned_cols=138 Identities=27% Similarity=0.379 Sum_probs=107.8
Q ss_pred eeCCCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCC
Q 011211 15 DLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDL 93 (491)
Q Consensus 15 ~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~ 93 (491)
++++.++|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .||++|++|+++||+|||+.. .
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------T 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------T
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------c
Confidence 46788999999999999999999999997 67899999999999999 899999999999999999843 5
Q ss_pred CCCccccccCCCCeeEe----------------cCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC---c
Q 011211 94 GGFPAWLLAKKPALKLR----------------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS---Y 154 (491)
Q Consensus 94 GGlP~WL~~~~~~~~~R----------------s~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~---~ 154 (491)
+..|.||.+++|++... .++|.|++++++++++|+++++.+ +.||+|||+||++. |
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-----p~vi~~~i~NE~~~~~~~ 144 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-----PAVIGWQIDNEPGYHRCY 144 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-----TTEEEEEECCSTTCTS--
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-----ceEEEEEeccccCcCcCC
Confidence 68899999888875431 257899999999999998888765 48999999999876 2
Q ss_pred C--CcHHHHHHHHHHH
Q 011211 155 G--DDKEYLHHLVTLA 168 (491)
Q Consensus 155 ~--~~~~y~~~l~~~~ 168 (491)
+ +.+.|.+||++++
T Consensus 145 ~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 145 SPACQAAFRQWLKEKY 160 (374)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHh
Confidence 2 2456777777766
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.34 E-value=4.2e-11 Score=121.47 Aligned_cols=146 Identities=24% Similarity=0.334 Sum_probs=102.0
Q ss_pred CceecCEeeEEEEEeeCCC------CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHH
Q 011211 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~------R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 74 (491)
.|+|||||+.+-|...|.+ .++.+.|+++|++||++|+|+||+. |-|.+ .+|+++|.+
T Consensus 7 ~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~-----h~p~~-----------~~~~~~cD~ 70 (298)
T PF02836_consen 7 GFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTH-----HYPPS-----------PRFYDLCDE 70 (298)
T ss_dssp EEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEET-----TS--S-----------HHHHHHHHH
T ss_pred EEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcc-----cccCc-----------HHHHHHHhh
Confidence 3899999999999999965 3579999999999999999999994 66655 899999999
Q ss_pred cCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCc
Q 011211 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (491)
Q Consensus 75 ~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~ 154 (491)
+||.|+.-+ | ..+.-.|-.... ......||.+.+.+.+-+++++.+.+.| +.||+|=+-||-
T Consensus 71 ~GilV~~e~-~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~NH-----PSIi~W~~gNE~--- 132 (298)
T PF02836_consen 71 LGILVWQEI-P-------LEGHGSWQDFGN--CNYDADDPEFRENAEQELREMVRRDRNH-----PSIIMWSLGNES--- 132 (298)
T ss_dssp HT-EEEEE--S--------BSCTSSSSTSC--TSCTTTSGGHHHHHHHHHHHHHHHHTT------TTEEEEEEEESS---
T ss_pred cCCEEEEec-c-------ccccCccccCCc--cccCCCCHHHHHHHHHHHHHHHHcCcCc-----CchheeecCccC---
Confidence 999999763 1 112212221110 1245678999998888888888887766 589999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEec
Q 011211 155 GDDKEYLHHLVTLARAHLGKDIILYTTD 182 (491)
Q Consensus 155 ~~~~~y~~~l~~~~~~~~G~~vpl~t~d 182 (491)
....+++.|.+++++. --+=|+..+.
T Consensus 133 -~~~~~~~~l~~~~k~~-DptRpv~~~~ 158 (298)
T PF02836_consen 133 -DYREFLKELYDLVKKL-DPTRPVTYAS 158 (298)
T ss_dssp -HHHHHHHHHHHHHHHH--TTSEEEEET
T ss_pred -ccccchhHHHHHHHhc-CCCCceeecc
Confidence 3467788888888886 4443543333
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.26 E-value=1.3e-09 Score=121.20 Aligned_cols=142 Identities=21% Similarity=0.168 Sum_probs=100.6
Q ss_pred CceecCEeeEEEEEeeCCC------CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHH
Q 011211 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~------R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 74 (491)
.|+|||||+++-|.+.|.. .++.+.|+.+|+.||++|+|+|++. |-|.+ .+|+++|.|
T Consensus 284 ~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~~-----------~~~~~~cD~ 347 (604)
T PRK10150 284 QFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-----HYPYS-----------EEMLDLADR 347 (604)
T ss_pred EEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-----cCCCC-----------HHHHHHHHh
Confidence 3899999999999999854 2568899999999999999999994 66644 789999999
Q ss_pred cCCeEEecCCCccccccCCCCCccccc-------cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcc
Q 011211 75 LDLLVMLRPGPYICAEWDLGGFPAWLL-------AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (491)
Q Consensus 75 ~gL~VilrpGPyi~aEw~~GGlP~WL~-------~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~Qi 147 (491)
+||+|+.... + -|+..|.. +..+.......+|.+.++..+-+++++.+.+.| ..||||-|
T Consensus 348 ~GllV~~E~p--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH-----PSIi~Ws~ 414 (604)
T PRK10150 348 HGIVVIDETP--A------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNH-----PSVVMWSI 414 (604)
T ss_pred cCcEEEEecc--c------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCC-----ceEEEEee
Confidence 9999998632 1 12222221 111211122345777776666666666655544 68999999
Q ss_pred cCccCCcC-CcHHHHHHHHHHHHHh
Q 011211 148 ENEFGSYG-DDKEYLHHLVTLARAH 171 (491)
Q Consensus 148 ENEyg~~~-~~~~y~~~l~~~~~~~ 171 (491)
-||...-. ....+++.+.+.+++.
T Consensus 415 gNE~~~~~~~~~~~~~~l~~~~k~~ 439 (604)
T PRK10150 415 ANEPASREQGAREYFAPLAELTRKL 439 (604)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhh
Confidence 99975422 2456778888888876
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.17 E-value=6.4e-10 Score=109.91 Aligned_cols=157 Identities=22% Similarity=0.371 Sum_probs=111.3
Q ss_pred ecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcC-CCCCe-eeeccchhHHHHHHHHHHcCCeEEe
Q 011211 4 KDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-PKPGK-LVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
.+|+++.+.+-+.|... ...-++.+++||++|+|+||+.|.|...+ +.|+. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 58999999999999321 22778999999999999999999995555 67764 6666667999999999999999999
Q ss_pred cCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCc----
Q 011211 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDD---- 157 (491)
Q Consensus 82 rpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~---- 157 (491)
.+ + ..|.|...... -...+...+...++++.|+.+++.+ .+|++++|=||......+
T Consensus 81 d~----h------~~~~w~~~~~~----~~~~~~~~~~~~~~~~~la~~y~~~-----~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 81 DL----H------NAPGWANGGDG----YGNNDTAQAWFKSFWRALAKRYKDN-----PPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------ESTTCSSSTST----TTTHHHHHHHHHHHHHHHHHHHTTT-----TTTEEEESSSSGCSTTSTTTTS
T ss_pred Ee----c------cCccccccccc----cccchhhHHHHHhhhhhhccccCCC-----CcEEEEEecCCccccCCccccc
Confidence 73 2 22777433221 1222333444444555666665533 479999999999875432
Q ss_pred -------HHHHHHHHHHHHHhcCCceEEEEec
Q 011211 158 -------KEYLHHLVTLARAHLGKDIILYTTD 182 (491)
Q Consensus 158 -------~~y~~~l~~~~~~~~G~~vpl~t~d 182 (491)
.++++.+.+.+|+. +.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~-~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAA-DPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHT-TSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhc-CCcceeecCC
Confidence 45677777778886 7777666555
No 9
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.87 E-value=3.9e-08 Score=97.95 Aligned_cols=220 Identities=15% Similarity=0.202 Sum_probs=134.6
Q ss_pred CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHH
Q 011211 47 WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGV 126 (491)
Q Consensus 47 Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~ 126 (491)
|...||++|+|||+ .++++++.|+++||.| |..+. =|.. ..|.|+.... .+...+++.+|+++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l---~W~~-~~P~W~~~~~--------~~~~~~~~~~~i~~ 65 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTL---VWHS-QTPDWVFNLS--------KETLLARLENHIKT 65 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEE---eecc-cCCHhhhcCC--------HHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 32222 2543 6899987532 33567778888888
Q ss_pred HHHHhccccccCCCCeEEEcccCccCCcC------------CcHHHHHHHHHHHHHhcCCceEEEEecCCCccc------
Q 011211 127 LLPKIAPLLYDIGGPIVMVQIENEFGSYG------------DDKEYLHHLVTLARAHLGKDIILYTTDGGTRET------ 188 (491)
Q Consensus 127 l~~~l~~~~~~~gGpII~~QiENEyg~~~------------~~~~y~~~l~~~~~~~~G~~vpl~t~d~~~~~~------ 188 (491)
++.+++ |.|..|+|-||.-..+ .+.+|+...-+.+|+. .-++.|+.+|-.....
T Consensus 66 v~~ry~-------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~-~P~a~l~~Ndy~~~~~~~k~~~ 137 (254)
T smart00633 66 VVGRYK-------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREA-DPDAKLFYNDYNTEEPNAKRQA 137 (254)
T ss_pred HHHHhC-------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHh-CCCCEEEEeccCCcCccHHHHH
Confidence 877765 4588899999953211 1347898888999987 7789999998652211
Q ss_pred --------ccCCCccCCeeeeecCCCCC-----CCCchhHHhhhhhcCCCCCCCcceeeccccccccCCCCCCCCHHHHH
Q 011211 189 --------LLKGTIRGDAVFAAVDFSTG-----AEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLTHWGEKIAKTDADFTA 255 (491)
Q Consensus 189 --------~~~g~~~~~d~~~t~~f~~~-----~~~~~~~~~~~~~~~~~~~P~~~~Ef~~GWfd~WG~~~~~~~~~~~~ 255 (491)
...|. + +..+.++.. .++....+.++++..- ..|.++||+-..+.+ .....++.+.
T Consensus 138 ~~~~v~~l~~~g~-~----iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~-g~pi~iTE~dv~~~~-----~~~~qA~~~~ 206 (254)
T smart00633 138 IYELVKKLKAKGV-P----IDGIGLQSHLSLGSPNIAEIRAALDRFASL-GLEIQITELDISGYP-----NPQAQAADYE 206 (254)
T ss_pred HHHHHHHHHHCCC-c----cceeeeeeeecCCCCCHHHHHHHHHHHHHc-CCceEEEEeecCCCC-----cHHHHHHHHH
Confidence 00111 1 222223221 1122233445555444 369999998765421 0011122233
Q ss_pred HHHHHHHHhCCceeeeeeccccCCCCCCCCCCCCCCCCCCCCccccCCCCccCCCCCCChHHHHH
Q 011211 256 SYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKA 320 (491)
Q Consensus 256 ~~l~~~l~~~~s~n~YM~hGGTNfG~~~Gan~~~~~~~~~p~~TSYDYdApl~E~G~~t~pKy~~ 320 (491)
..+..+++..+-..+.| ||++.+.. +.+ ++..++++++|++++ -|..
T Consensus 207 ~~l~~~~~~p~v~gi~~------Wg~~d~~~-------W~~----~~~~~L~d~~~~~kp-a~~~ 253 (254)
T smart00633 207 EVFKACLAHPAVTGVTV------WGVTDKYS-------WLD----GGAPLLFDANYQPKP-AYWA 253 (254)
T ss_pred HHHHHHHcCCCeeEEEE------eCCccCCc-------ccC----CCCceeECCCCCCCh-hhhc
Confidence 33344444333334444 47775532 222 134468899999995 6653
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.84 E-value=1.3e-07 Score=110.76 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=94.8
Q ss_pred CceecCEeeEEEEEeeCCC------CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHH
Q 011211 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~------R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 74 (491)
.|+|||||+++-|...|.. +++++.|+++|+.||++|+|+||+. |-|.. .+|+++|.|
T Consensus 342 ~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-----------p~fydlcDe 405 (1027)
T PRK09525 342 LLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCS-----HYPNH-----------PLWYELCDR 405 (1027)
T ss_pred EEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------HHHHHHHHH
Confidence 3899999999999999843 4679999999999999999999993 65544 789999999
Q ss_pred cCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCc
Q 011211 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (491)
Q Consensus 75 ~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~ 154 (491)
+||+|+-... .|+ .|-.|. . . -.+||.|.+++.+=+++++.+.+. +..||||=+-||-+.
T Consensus 406 ~GilV~dE~~----~e~-hg~~~~------~--~-~~~dp~~~~~~~~~~~~mV~RdrN-----HPSIi~WSlgNE~~~- 465 (1027)
T PRK09525 406 YGLYVVDEAN----IET-HGMVPM------N--R-LSDDPRWLPAMSERVTRMVQRDRN-----HPSIIIWSLGNESGH- 465 (1027)
T ss_pred cCCEEEEecC----ccc-cCCccc------c--C-CCCCHHHHHHHHHHHHHHHHhCCC-----CCEEEEEeCccCCCc-
Confidence 9999998742 111 111121 0 0 145788877765555555555554 468999999999763
Q ss_pred CCcHHHHHHHHHHHHHh
Q 011211 155 GDDKEYLHHLVTLARAH 171 (491)
Q Consensus 155 ~~~~~y~~~l~~~~~~~ 171 (491)
+ .....+.+.+++.
T Consensus 466 g---~~~~~l~~~~k~~ 479 (1027)
T PRK09525 466 G---ANHDALYRWIKSN 479 (1027)
T ss_pred C---hhHHHHHHHHHhh
Confidence 2 2245566666664
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=4e-08 Score=111.73 Aligned_cols=127 Identities=23% Similarity=0.310 Sum_probs=99.3
Q ss_pred CceecCEeeEEEEEeeCCC-----CCC-hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHH
Q 011211 1 MFRKDGEPFRIIGGDLHYF-----RIL-PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~-----R~p-~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 74 (491)
.|+|||||+++-|..-|.+ |.- .+..+++|++||++|+|+|||- |-|.. .+|++||.+
T Consensus 292 ~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~~~ydLcDe 355 (808)
T COG3250 292 LLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------EEFYDLCDE 355 (808)
T ss_pred eEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------HHHHHHHHH
Confidence 3899999999999999977 444 5559999999999999999997 88877 899999999
Q ss_pred cCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCc
Q 011211 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (491)
Q Consensus 75 ~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~ 154 (491)
+||+||--+ ..||- |.| +||.|++.+..=+++++++.+.| +.||||=+.||-|.-
T Consensus 356 lGllV~~Ea----~~~~~--~~~--------------~~~~~~k~~~~~i~~mver~knH-----PSIiiWs~gNE~~~g 410 (808)
T COG3250 356 LGLLVIDEA----MIETH--GMP--------------DDPEWRKEVSEEVRRMVERDRNH-----PSIIIWSLGNESGHG 410 (808)
T ss_pred hCcEEEEec----chhhc--CCC--------------CCcchhHHHHHHHHHHHHhccCC-----CcEEEEeccccccCc
Confidence 999999983 33443 333 78888888887777777777765 589999999998753
Q ss_pred CCcHHHHHHHHHHH
Q 011211 155 GDDKEYLHHLVTLA 168 (491)
Q Consensus 155 ~~~~~y~~~l~~~~ 168 (491)
.....-..|.++.-
T Consensus 411 ~~~~~~~~~~k~~d 424 (808)
T COG3250 411 SNHWALYRWFKASD 424 (808)
T ss_pred cccHHHHHHHhhcC
Confidence 33343444544443
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.76 E-value=1.1e-07 Score=111.48 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=96.1
Q ss_pred CceecCEeeEEEEEeeCCC-----C-CChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHH
Q 011211 1 MFRKDGEPFRIIGGDLHYF-----R-ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (491)
Q Consensus 1 ~f~~dGkp~~~~sG~~Hy~-----R-~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 74 (491)
.|+|||||+++-|...|.+ | ++++.|+++|+.||++|+|+||+. |-|.. .+|+++|.|
T Consensus 326 ~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-----------~~fydlcDe 389 (1021)
T PRK10340 326 LFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPND-----------PRFYELCDI 389 (1021)
T ss_pred EEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------HHHHHHHHH
Confidence 3899999999999998844 2 468999999999999999999994 66654 689999999
Q ss_pred cCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCc
Q 011211 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (491)
Q Consensus 75 ~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~ 154 (491)
+||+|+-.. |..|. |++ .... ...-+++|.+.++..+=+++++.+.+. +..||||=+.||-+.
T Consensus 390 ~GllV~dE~-~~e~~-----g~~--~~~~---~~~~~~~p~~~~~~~~~~~~mV~RdrN-----HPSIi~WslGNE~~~- 452 (1021)
T PRK10340 390 YGLFVMAET-DVESH-----GFA--NVGD---ISRITDDPQWEKVYVDRIVRHIHAQKN-----HPSIIIWSLGNESGY- 452 (1021)
T ss_pred CCCEEEECC-ccccc-----Ccc--cccc---cccccCCHHHHHHHHHHHHHHHHhCCC-----CCEEEEEECccCccc-
Confidence 999999874 32222 221 1111 112256777766544445555555554 468999999999763
Q ss_pred CCcHHHHHHHHHHHHHh
Q 011211 155 GDDKEYLHHLVTLARAH 171 (491)
Q Consensus 155 ~~~~~y~~~l~~~~~~~ 171 (491)
+ . .+..+.+.+++.
T Consensus 453 g--~-~~~~~~~~~k~~ 466 (1021)
T PRK10340 453 G--C-NIRAMYHAAKAL 466 (1021)
T ss_pred c--H-HHHHHHHHHHHh
Confidence 3 2 246677777775
No 13
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.39 E-value=8.1e-06 Score=84.27 Aligned_cols=269 Identities=17% Similarity=0.282 Sum_probs=164.9
Q ss_pred EEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEe--ccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccc
Q 011211 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTY--VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 11 ~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~ 88 (491)
.+|.+++..++..+. ..+.+-..-||.|..- .-|+..||.+|+|||+ ..+++++.|+++||.|--.+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~----- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT----- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE-----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee-----
Confidence 789999988777542 4445555679999985 5599999999999999 89999999999999976431
Q ss_pred cccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcC--------C----
Q 011211 89 AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG--------D---- 156 (491)
Q Consensus 89 aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~--------~---- 156 (491)
-=|.. ..|.|+... .... ....+...+++++++++++.+.+.. |.|.+|-|=||-=.-. +
T Consensus 80 LvW~~-~~P~w~~~~-~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-----g~i~~WDVvNE~i~~~~~~~~~r~~~~~~ 151 (320)
T PF00331_consen 80 LVWHS-QTPDWVFNL-ANGS-PDEKEELRARLENHIKTVVTRYKDK-----GRIYAWDVVNEAIDDDGNPGGLRDSPWYD 151 (320)
T ss_dssp EEESS-SS-HHHHTS-TTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-----TTESEEEEEES-B-TTSSSSSBCTSHHHH
T ss_pred EEEcc-cccceeeec-cCCC-cccHHHHHHHHHHHHHHHHhHhccc-----cceEEEEEeeecccCCCccccccCChhhh
Confidence 11544 789999875 1000 0112358888999999998887754 7899999999963211 0
Q ss_pred --cHHHHHHHHHHHHHhcCCceEEEEecCCCccc-------------ccCCCccCCeeeeecCCCC----CCCCchhHHh
Q 011211 157 --DKEYLHHLVTLARAHLGKDIILYTTDGGTRET-------------LLKGTIRGDAVFAAVDFST----GAEPWPIFKL 217 (491)
Q Consensus 157 --~~~y~~~l~~~~~~~~G~~vpl~t~d~~~~~~-------------~~~g~~~~~d~~~t~~f~~----~~~~~~~~~~ 217 (491)
..+|+...-+.+++. -.++.||-||...... ...|. + +..+.++. +..+....+.
T Consensus 152 ~lG~~yi~~aF~~A~~~-~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gv-p----IdgIG~Q~H~~~~~~~~~i~~~ 225 (320)
T PF00331_consen 152 ALGPDYIADAFRAAREA-DPNAKLFYNDYNIESPAKRDAYLNLVKDLKARGV-P----IDGIGLQSHFDAGYPPEQIWNA 225 (320)
T ss_dssp HHTTCHHHHHHHHHHHH-HTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTTH-C----S-EEEEEEEEETTSSHHHHHHH
T ss_pred cccHhHHHHHHHHHHHh-CCCcEEEeccccccchHHHHHHHHHHHHHHhCCC-c----cceechhhccCCCCCHHHHHHH
Confidence 356888888888887 6689999999864322 00111 1 11222322 2222334455
Q ss_pred hhhhcCCCCCCCcceeeccccccccCCCCCC------CCHHHHHHHHHHHHHhC-CceeeeeeccccCCCCCCCCCCCCC
Q 011211 218 QKQFNAPGKSPPLSSEFYTGWLTHWGEKIAK------TDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNGANTGNT 290 (491)
Q Consensus 218 ~~~~~~~~~~P~~~~Ef~~GWfd~WG~~~~~------~~~~~~~~~l~~~l~~~-~s~n~YM~hGGTNfG~~~Gan~~~~ 290 (491)
++++..-| -|..+||+ |-....... ..++.+..-++.+++.. +++ -|=|=||++.+.+
T Consensus 226 l~~~~~~G-l~i~ITEl-----Dv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v-----~git~Wg~~D~~s---- 290 (320)
T PF00331_consen 226 LDRFASLG-LPIHITEL-----DVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAV-----EGITWWGFTDGYS---- 290 (320)
T ss_dssp HHHHHTTT-SEEEEEEE-----EEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTE-----EEEEESSSBTTGS----
T ss_pred HHHHHHcC-CceEEEee-----eecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCC-----CEEEEECCCCCCc----
Confidence 66665554 69999996 333222111 11222233344444544 122 2336678887643
Q ss_pred CCCCCCCccccCCCCccCCCCCCChHHHHHHHHH
Q 011211 291 ESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRV 324 (491)
Q Consensus 291 ~~~~~p~~TSYDYdApl~E~G~~t~pKy~~lr~~ 324 (491)
+.+... .++..|.++++++.+ -|.++++.
T Consensus 291 ---W~~~~~-~~~~~lfd~~~~~Kp-a~~~~~~a 319 (320)
T PF00331_consen 291 ---WRPDTP-PDRPLLFDEDYQPKP-AYDAIVDA 319 (320)
T ss_dssp ---TTGGHS-EG--SSB-TTSBB-H-HHHHHHHH
T ss_pred ---ccCCCC-CCCCeeECCCcCCCH-HHHHHHhc
Confidence 322111 577899999999996 99998875
No 14
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.23 E-value=5.8e-05 Score=76.93 Aligned_cols=235 Identities=17% Similarity=0.254 Sum_probs=113.3
Q ss_pred ecCEeeEEEEEeeCCC---CCChhhHHHHHHHHHHcCCCEEEEecc--CCCc--------CC----CCCeeeeccc----
Q 011211 4 KDGEPFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLH--------EP----KPGKLVFSGI---- 62 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~---R~p~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~~dF~g~---- 62 (491)
-||+||+.++ .-.+. |...+.|+.-|+..|+-|||+|++=|+ |..+ .| .++.+||+..
T Consensus 8 ~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 8 ADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp TTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H
T ss_pred CCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH
Confidence 6999999996 66664 677899999999999999999999766 4432 11 2233788764
Q ss_pred -hhHHHHHHHHHHcCCeEEecC---CCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccC
Q 011211 63 -ADLVSFLKLCQKLDLLVMLRP---GPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDI 138 (491)
Q Consensus 63 -~dl~~fl~la~~~gL~Vilrp---GPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~ 138 (491)
..+++.|+.|.+.||.+-|-| +||.-.-|-+| ...| =.+.+++|.+.|+.+++.+.
T Consensus 87 F~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~~~m--------~~e~~~~Y~~yv~~Ry~~~~--- 146 (289)
T PF13204_consen 87 FDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------PNIM--------PPENAERYGRYVVARYGAYP--- 146 (289)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------TTSS---------HHHHHHHHHHHHHHHTT-S---
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------ccCC--------CHHHHHHHHHHHHHHHhcCC---
Confidence 389999999999999976653 12222222222 1111 13567889999999999873
Q ss_pred CCCeEEEcccCccCCcCCcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCCccCCeeeeecCCCCCC--CCchhHH
Q 011211 139 GGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGA--EPWPIFK 216 (491)
Q Consensus 139 gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~~~G~~vpl~t~d~~~~~~~~~g~~~~~d~~~t~~f~~~~--~~~~~~~ 216 (491)
+|| |=|-||+.....+.++.+.+.+.+++.-+-. |.|.-...... .+-......-+...-++++. .......
T Consensus 147 --Nvi-W~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~--L~T~H~~~~~~-~~~~~~~~~Wldf~~~Qsgh~~~~~~~~~ 220 (289)
T PF13204_consen 147 --NVI-WILGGDYFDTEKTRADWDAMARGIKENDPYQ--LITIHPCGRTS-SPDWFHDEPWLDFNMYQSGHNRYDQDNWY 220 (289)
T ss_dssp --SEE-EEEESSS--TTSSHHHHHHHHHHHHHH--SS---EEEEE-BTEB-THHHHTT-TT--SEEEB--S--TT--THH
T ss_pred --CCE-EEecCccCCCCcCHHHHHHHHHHHHhhCCCC--cEEEeCCCCCC-cchhhcCCCcceEEEeecCCCcccchHHH
Confidence 466 7799999222357788888888888873333 44433221100 00001111001101112221 0111122
Q ss_pred h---hhhhcCCCCCCCcceee-ccccccccCCCCCCCCHHHHHH-HHHHHHHhC
Q 011211 217 L---QKQFNAPGKSPPLSSEF-YTGWLTHWGEKIAKTDADFTAS-YLEKILSQN 265 (491)
Q Consensus 217 ~---~~~~~~~~~~P~~~~Ef-~~GWfd~WG~~~~~~~~~~~~~-~l~~~l~~~ 265 (491)
. ...++..+.+|.++.|- |-|--..+.......+++++.. ....+|+++
T Consensus 221 ~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 221 YLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp HH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred HHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 2 23334444679999994 3444433222233445666654 466777776
No 15
>TIGR03356 BGL beta-galactosidase.
Probab=98.17 E-value=2.5e-06 Score=91.44 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
-..|+++++.||++|+|++|+-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+--= .-.+|.||.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~ 124 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALE 124 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHH
Confidence 4689999999999999999999999999999 7899988888999999999999999887621 236899998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~ 133 (491)
++.+ . .++...++-.+|.+.+++++++
T Consensus 125 ~~gG-w----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 125 DRGG-W----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred hcCC-C----CChHHHHHHHHHHHHHHHHhCC
Confidence 7633 2 2355555555555666665554
No 16
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.0011 Score=68.03 Aligned_cols=129 Identities=19% Similarity=0.338 Sum_probs=98.8
Q ss_pred HHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecC
Q 011211 33 AKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSS 112 (491)
Q Consensus 33 ~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~ 112 (491)
.|+++.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+--- +.| |-+ -.|.|+..+. -+
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e------~~ 119 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE------LS 119 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc------cC
Confidence 4444444444556699999999999999 5699999999999974322 222 333 6688887753 34
Q ss_pred CHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC-----------c-CCcHHHHHHHHHHHHHhcCCceEEEE
Q 011211 113 DRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-----------Y-GDDKEYLHHLVTLARAHLGKDIILYT 180 (491)
Q Consensus 113 d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~-----------~-~~~~~y~~~l~~~~~~~~G~~vpl~t 180 (491)
-+..++.+++|+..++.+.+. -|+.|-|=||-=. + +...+|+++.-..+|+. .-+..||-
T Consensus 120 ~~~~~~~~e~hI~tV~~rYkg-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~Area-dP~AkL~~ 191 (345)
T COG3693 120 KEALAKMVEEHIKTVVGRYKG-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREA-DPDAKLVI 191 (345)
T ss_pred hHHHHHHHHHHHHHHHHhccC-------ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhh-CCCceEEe
Confidence 578999999999999999874 4789999999632 2 23678999999999997 88899999
Q ss_pred ecCC
Q 011211 181 TDGG 184 (491)
Q Consensus 181 ~d~~ 184 (491)
||..
T Consensus 192 NDY~ 195 (345)
T COG3693 192 NDYS 195 (345)
T ss_pred eccc
Confidence 9973
No 17
>PLN02161 beta-amylase
Probab=97.99 E-value=2.2e-05 Score=84.16 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecCCCcccccc----CCCCCc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEW----DLGGFP 97 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw----~~GGlP 97 (491)
++.-+..|+++|++|+..|.+-|-|...|. .|++|||+| ..++.+++++.||++.+--.=.-|+.= -+=-||
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP 192 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCC
Confidence 556788999999999999999999999998 799999994 688899999999995443211223221 001379
Q ss_pred ccccc---CCCCeeEe
Q 011211 98 AWLLA---KKPALKLR 110 (491)
Q Consensus 98 ~WL~~---~~~~~~~R 110 (491)
.|+.+ ..|+|...
T Consensus 193 ~WV~~~g~~~pDi~ft 208 (531)
T PLN02161 193 LWIREIGDVNKDIYYR 208 (531)
T ss_pred HHHHhhhccCCCceEE
Confidence 99986 34556553
No 18
>PLN00197 beta-amylase; Provisional
Probab=97.95 E-value=3.4e-05 Score=83.43 Aligned_cols=82 Identities=24% Similarity=0.394 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC------C
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG------G 95 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G------G 95 (491)
++.-+..|+++|++|+..|.+-|-|...|. .|++|||+| ..++++++++.||++.+--.=.-|+. +- -
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG--NVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG--NVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 567889999999999999999999999998 799999995 68889999999999544311122332 11 3
Q ss_pred Ccccccc---CCCCeeE
Q 011211 96 FPAWLLA---KKPALKL 109 (491)
Q Consensus 96 lP~WL~~---~~~~~~~ 109 (491)
||.|+.+ ..|+|..
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999986 3455554
No 19
>PLN02803 beta-amylase
Probab=97.94 E-value=4.1e-05 Score=82.58 Aligned_cols=119 Identities=23% Similarity=0.462 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC-----CC
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-----GF 96 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G-----Gl 96 (491)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++++++++.||++.+--.=.-|+. +-| -|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpL 181 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 566788999999999999999999999998 599999995 68889999999999544321122332 001 38
Q ss_pred cccccc---CCCCeeEecC----CHHH----------------HHHHHHHHHHHHHHhccccccCCCCeEEEccc
Q 011211 97 PAWLLA---KKPALKLRSS----DRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (491)
Q Consensus 97 P~WL~~---~~~~~~~Rs~----d~~y----------------~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE 148 (491)
|.|+.+ ..|+|...+. |+.| ++.-..|++..-..++++. |+.|..|||.
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l---~~~I~eI~VG 253 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL---GGVIAEIQVG 253 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh---cCceEEEEec
Confidence 999986 3456654321 1111 2333445555556666664 4688888883
No 20
>PLN02705 beta-amylase
Probab=97.89 E-value=4.7e-05 Score=82.97 Aligned_cols=117 Identities=18% Similarity=0.358 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeE--EecCCCccccccCCC-----
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLG----- 94 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~V--ilrpGPyi~aEw~~G----- 94 (491)
++.-+..|+++|++|+..|.+-|-|...|. .|++|||+| ..+++++|++.||++ ||.. .-|+. +.
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG--NVGD~~~ 339 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG--NASGNVM 339 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC--CCCCccc
Confidence 677889999999999999999999999998 699999995 688899999999994 4442 22332 22
Q ss_pred -CCcccccc---CCCCeeEec--------------CC-H-----HHHHHHHHHHHHHHHHhccccccCCCCeEEEccc
Q 011211 95 -GFPAWLLA---KKPALKLRS--------------SD-R-----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (491)
Q Consensus 95 -GlP~WL~~---~~~~~~~Rs--------------~d-~-----~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE 148 (491)
-||.|+.+ +.|+|.+.. ++ | .-++.-..|++.+-..+++++ .+|-|.-|||.
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~g~I~eI~VG 415 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--VEGLITAVEIG 415 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCceeEEEec
Confidence 38999985 345655422 11 1 123444555566666666665 24788888883
No 21
>PLN02801 beta-amylase
Probab=97.89 E-value=6.3e-05 Score=80.80 Aligned_cols=119 Identities=19% Similarity=0.365 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC------C
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG------G 95 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G------G 95 (491)
++.-+..|+++|++|+..|.+.|-|...|. .|++|||+| -.++.+++++.||++.+--.=.-|+. +- -
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~~Ip 110 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG--NVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 667889999999999999999999999998 599999995 68889999999999544311122322 11 3
Q ss_pred Ccccccc---CCCCeeEec----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCCeEEEccc
Q 011211 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (491)
Q Consensus 96 lP~WL~~---~~~~~~~Rs----~d~~y----------------~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE 148 (491)
||.|+.+ ..|+|...+ .|+.| ++.-..|++.....++++. .+|-|..|||.
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l--~~~~I~eI~VG 184 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL--EAGVIIDIEVG 184 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCeeEEEEEc
Confidence 8999986 345554421 11112 2333445555555666654 23688888883
No 22
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.88 E-value=0.00022 Score=72.93 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred ecCEeeEEEEEeeCCCCC-----------ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHH
Q 011211 4 KDGEPFRIIGGDLHYFRI-----------LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC 72 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~R~-----------p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la 72 (491)
.+|++|+|.|-.+-+--. .++.|++++..||++|+|||++|- ..|. .|-++++++.
T Consensus 22 ~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~---------~nHd~CM~~~ 88 (314)
T PF03198_consen 22 KNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS---------KNHDECMSAF 88 (314)
T ss_dssp TT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT---------S--HHHHHHH
T ss_pred CCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC---------CCHHHHHHHH
Confidence 688999999877765433 378999999999999999999992 2222 3889999999
Q ss_pred HHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCH--HHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCc
Q 011211 73 QKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDR--AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (491)
Q Consensus 73 ~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~--~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENE 150 (491)
++.|+|||+--+. | ...+...+| .|-...-.-+.+++..++++. +++++=+.||
T Consensus 89 ~~aGIYvi~Dl~~-----------p--------~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~-----N~LgFf~GNE 144 (314)
T PF03198_consen 89 ADAGIYVILDLNT-----------P--------NGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD-----NTLGFFAGNE 144 (314)
T ss_dssp HHTT-EEEEES-B-----------T--------TBS--TTS------HHHHHHHHHHHHHHTT-T-----TEEEEEEEES
T ss_pred HhCCCEEEEecCC-----------C--------CccccCCCCcCCCCHHHHHHHHHHHHHhccCC-----ceEEEEecce
Confidence 9999999998431 2 112223344 333332233345677777775 8999999999
Q ss_pred cCCcC---C----cHHHHHHHHHHHHHhcCC-ceE--EEEecCCC-----cccccCCCccC-CeeeeecCC-CCCCCCc-
Q 011211 151 FGSYG---D----DKEYLHHLVTLARAHLGK-DII--LYTTDGGT-----RETLLKGTIRG-DAVFAAVDF-STGAEPW- 212 (491)
Q Consensus 151 yg~~~---~----~~~y~~~l~~~~~~~~G~-~vp--l~t~d~~~-----~~~~~~g~~~~-~d~~~t~~f-~~~~~~~- 212 (491)
--.-. . -++..+.+|+-+++. +. .+| .-++|... ...+.||.-.. .|+|+.-++ .++....
T Consensus 145 Vin~~~~t~aap~vKAavRD~K~Yi~~~-~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~ 223 (314)
T PF03198_consen 145 VINDASNTNAAPYVKAAVRDMKAYIKSK-GYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFE 223 (314)
T ss_dssp SS-STT-GGGHHHHHHHHHHHHHHHHHS-SS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HH
T ss_pred eecCCCCcccHHHHHHHHHHHHHHHHhc-CCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccc
Confidence 86432 1 355666666666665 54 344 34556531 13467876421 244542221 1221110
Q ss_pred -hhHH-hhhhhcCCCCCCCcceeecc
Q 011211 213 -PIFK-LQKQFNAPGKSPPLSSEFYT 236 (491)
Q Consensus 213 -~~~~-~~~~~~~~~~~P~~~~Ef~~ 236 (491)
..++ ..+.|..- .-|.|.+||..
T Consensus 224 ~SGy~~l~~~f~~y-~vPvffSEyGC 248 (314)
T PF03198_consen 224 TSGYDRLTKEFSNY-SVPVFFSEYGC 248 (314)
T ss_dssp HHSHHHHHHHHTT--SS-EEEEEE--
T ss_pred cccHHHHHHHhhCC-CCCeEEcccCC
Confidence 1122 23444332 36999999854
No 23
>PLN02905 beta-amylase
Probab=97.85 E-value=6.6e-05 Score=82.12 Aligned_cols=119 Identities=16% Similarity=0.328 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC------C
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG------G 95 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G------G 95 (491)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++|++.||++.+--.=.-|+. +- -
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG--NVGD~~~IP 359 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG--NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 556788999999999999999999999998 799999995 68889999999999544321122332 11 3
Q ss_pred Ccccccc---CCCCeeEec--------------CC-H-----HHHHHHHHHHHHHHHHhccccccCCCCeEEEccc
Q 011211 96 FPAWLLA---KKPALKLRS--------------SD-R-----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (491)
Q Consensus 96 lP~WL~~---~~~~~~~Rs--------------~d-~-----~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE 148 (491)
||.|+++ ..|+|.+.. ++ | .-++.-..|++.+-..+++++ .+|-|.-|||.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~g~I~eI~VG 433 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF--EDGVISMVEVG 433 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCceEEEEec
Confidence 8999986 345555422 11 1 123344445555666666664 24688888883
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.68 E-value=3.9e-05 Score=80.84 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCcccc----ccCCCCCccc
Q 011211 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA----EWDLGGFPAW 99 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~a----Ew~~GGlP~W 99 (491)
.-+..|+++|++|+..|.+.|-|...|.. |++|||+ -..++.++|++.||++.+--.=.-|+ .+-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45788999999999999999999999997 9999999 56899999999999965532112231 1111147999
Q ss_pred ccc---CCCCeeEec--------------CCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEccc
Q 011211 100 LLA---KKPALKLRS--------------SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (491)
Q Consensus 100 L~~---~~~~~~~Rs--------------~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE 148 (491)
+.+ +. +|...+ .... ++.-..|++.+...++++. +-|..|||.
T Consensus 94 v~~~~~~~-di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~----~~I~~I~vg 153 (402)
T PF01373_consen 94 VWEIGKKD-DIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHS-GGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH----TGEEEEEE-
T ss_pred HHhccccC-CcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH----hhheEEEec
Confidence 974 22 454321 1123 5555667777777777665 578888773
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00043 Score=73.80 Aligned_cols=114 Identities=15% Similarity=0.267 Sum_probs=75.9
Q ss_pred hhhH-----HHHHHHHHHcCCCEEEEeccCCCcCCC----CCeeeeccchhHHHHHHHHHHcCCeEEec----CCCcccc
Q 011211 23 PQHW-----EDRLLRAKALGLNTIQTYVPWNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLR----PGPYICA 89 (491)
Q Consensus 23 ~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~gL~Vilr----pGPyi~a 89 (491)
...| ++.+..||.+|||+||+++.|..+++. |...+=+-...|+++|+.|++.||+|++- ||.-.|-
T Consensus 67 ~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~ 146 (407)
T COG2730 67 ESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGH 146 (407)
T ss_pred hhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCc
Confidence 5678 899999999999999999994444554 33332222238999999999999999997 3333332
Q ss_pred ccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC
Q 011211 90 EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (491)
Q Consensus 90 Ew~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~ 153 (491)
| ..|.....++ .....++..+-++.|+.+.++ .-.||++|+=||.-.
T Consensus 147 ~------~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~~-----~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 E------HSGYTSDYKE------ENENVEATIDIWKFIANRFKN-----YDTVIGFELINEPNG 193 (407)
T ss_pred C------cccccccccc------cchhHHHHHHHHHHHHHhccC-----CCceeeeeeecCCcc
Confidence 2 4455444442 222334444444555555555 358999999999974
No 26
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.42 E-value=0.00014 Score=79.07 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=83.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC--CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
-..|+++++.||++|+|+.++-+.|...+|. ++++|=+|..-.+++|+.|.++||.+++.- -.=.+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHH
Confidence 4567999999999999999999999999997 556777888899999999999999987651 134789999
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeE
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII 143 (491)
..+.+.-.-|..=..|.++++.-++++..+++-+..-|...++
T Consensus 142 ~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 142 VTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 8764433223333456666666666666666655544655544
No 27
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.36 E-value=0.00024 Score=77.35 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC--CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
-..|+++++.||++|+|+-|+-|.|....|. +|++|-.|..-.+++|+.|.++||..++-- -.=.+|.||
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L 139 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHL 139 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHH
Confidence 3578999999999999999999999999997 667888888899999999999999977751 133789999
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCe
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPI 142 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpI 142 (491)
..+++.-.=|..-..|.++++.-++++..+++-+..-|...+
T Consensus 140 ~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 140 VQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 876443222322334555555555555555554443355444
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.36 E-value=0.00024 Score=76.74 Aligned_cols=98 Identities=14% Similarity=0.253 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC--CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
-..|+++|+.||++|+|+.++-|.|...+|. +|++|-.|..--+++|+.+.++||..++- --.-.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vt--------L~H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVT--------LYHFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEE--------EESS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeee--------eeecccccce
Confidence 4679999999999999999999999999999 69999999889999999999999997765 2245789999
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~ 133 (491)
.+. +.- . ++...+.-.+|.+.+++++.+
T Consensus 129 ~~~-ggw--~--~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 129 EDY-GGW--L--NRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHH-TGG--G--STHHHHHHHHHHHHHHHHHTT
T ss_pred eec-ccc--c--CHHHHHHHHHHHHHHHHHhCC
Confidence 874 322 1 345555556666666666665
No 29
>PLN02998 beta-glucosidase
Probab=97.33 E-value=0.00025 Score=77.44 Aligned_cols=114 Identities=8% Similarity=0.077 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
-..|+++++.||++|+|+-|+-|.|...+|. .|.+|=.|..--+++|+.+.++||..++-- -.=-+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHH
Confidence 4678999999999999999999999999996 677888899999999999999999866641 1225799998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEE
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVM 144 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~ 144 (491)
.+++.-.=|..=..|.++++.-++++..+++-+..-|...+++
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~ 195 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFA 195 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhh
Confidence 7644333344445688888777777777777666556555443
No 30
>PLN02814 beta-glucosidase
Probab=97.27 E-value=0.00033 Score=76.75 Aligned_cols=113 Identities=10% Similarity=0.121 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
-..|+++++.||++|+|+-|+-|.|...+|. +|.+|-.|..--+++|+.|.++||..++-- + =| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL----~-H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL----Y-HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe----c-CC---CCCHHHH
Confidence 4678999999999999999999999999996 688899999999999999999999966641 1 13 5799998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeE
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII 143 (491)
++++.-.-|..-..|.++++.-++++..+++-+..-|...++
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~ 189 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIF 189 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchh
Confidence 864433333334567777777777777777766554555544
No 31
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.21 E-value=0.00047 Score=75.07 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC--CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
-..|+++++.||++|+|+-|+-|.|...+|. +|++|=.|..--+++|+.|.++||..++-- -.=-+|.||
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L 143 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHL 143 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHH
Confidence 4679999999999999999999999999997 667888888899999999999999866641 123689999
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeE
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII 143 (491)
..+++.-.-|..=..|.++++.-++++..+++-+..-|...++
T Consensus 144 ~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 144 IEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 8764433333333567777777777777777766544554443
No 32
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.16 E-value=0.0005 Score=74.81 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC--CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
-..|+++++.||++|+|+-|+-|.|...+|. +|++|=.|..--+++|+.|.++||..++-- -.=-+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHH
Confidence 4669999999999999999999999999997 566888888899999999999999866641 123689999
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeE
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII 143 (491)
..+++.-.-|..-..|.++++.-++++..+++-+..-|...++
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~ 180 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQ 180 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhh
Confidence 8764433334434567777777777777777766544655543
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.14 E-value=0.009 Score=56.24 Aligned_cols=128 Identities=17% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCcC-----CC---CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccc
Q 011211 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-----PK---PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aE 90 (491)
..+.++.|+++|+.||++|+++|=+= |.-.+ |. ++.|.-.....|+.+|++|++.||+|.+.-+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~------ 86 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY------ 86 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC------
Confidence 58899999999999999999999542 22111 11 2222223345899999999999999998732
Q ss_pred cCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcC-CcHHHHHHHHHHHH
Q 011211 91 WDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLAR 169 (491)
Q Consensus 91 w~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~-~~~~y~~~l~~~~~ 169 (491)
--|.|... .|+.. ...+-++|+..+... +.+....-+|=|-.|...+. ...+..+.|.+.++
T Consensus 87 ----~~~~~w~~---------~~~~~---~~~~~~~v~~el~~~-yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk 149 (166)
T PF14488_consen 87 ----FDPDYWDQ---------GDLDW---EAERNKQVADELWQR-YGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLK 149 (166)
T ss_pred ----CCchhhhc---------cCHHH---HHHHHHHHHHHHHHH-HcCCCCCceEEEecccCCcccchHHHHHHHHHHHH
Confidence 12445432 12222 111123355555543 33455888899999987664 35666777777776
Q ss_pred Hh
Q 011211 170 AH 171 (491)
Q Consensus 170 ~~ 171 (491)
+.
T Consensus 150 ~~ 151 (166)
T PF14488_consen 150 QI 151 (166)
T ss_pred Hh
Confidence 65
No 34
>PLN02849 beta-glucosidase
Probab=97.11 E-value=0.00057 Score=74.84 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
-..|+++++.||++|+|+-|+-|.|...+|. .|.+|=.|..--+++|+.|.++||..++-- -.=-+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHH
Confidence 4678999999999999999999999999996 477888888899999999999999966641 1235899998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEE
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~ 145 (491)
++++.-.=|..-..|.++++.-++++..+++-+..-|...++..
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~ 193 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTI 193 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhh
Confidence 76443333333456777777777777777776655465555433
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.02 E-value=0.00077 Score=73.24 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
-..|+++++.||++|+|+-|+-|.|...+|. .|.+|-.|..--+++|+.|.++||..++-- -.=.+|.||.
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~ 124 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALH 124 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHH
Confidence 3568999999999999999999999999996 577888898999999999999999866641 1236899998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeE
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII 143 (491)
+..+ -.-|..-..|.++++.-++++.. ++-+..-|...++
T Consensus 125 ~~GG-W~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 125 SNGD-WLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred HcCC-CCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 7533 32233334566666666666666 5554433544443
No 36
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.94 E-value=0.0011 Score=71.98 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
-..|+++++.||++|+|+-|+-|.|...+|. +|++|=.|..--+++|+.|.++||..++-- -.=-+|.||.
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~ 123 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALH 123 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHH
Confidence 3678999999999999999999999999996 677888888899999999999999977652 1235899998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCC
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGP 141 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGp 141 (491)
+..+ -.-|..=..|.++++.-++++.. ++-+..-|...
T Consensus 124 ~~GG-W~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~ 161 (467)
T TIGR01233 124 SNGD-FLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIG 161 (467)
T ss_pred HcCC-CCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchh
Confidence 7633 33344344566666666666653 44333224433
No 37
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.93 E-value=0.0015 Score=60.26 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=60.7
Q ss_pred ccCccceEEEEEeeCCCC----CCcceecCCcccEEEEEeCCccCCCCCCCceEEEEEecc-CcceeecCCCCCCC-cEE
Q 011211 380 VGQMFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSN-ISL 453 (491)
Q Consensus 380 lgQ~~GyvlY~t~i~~~~----~~~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~-~~~~~~~~~~~~~~-~~L 453 (491)
.....|..+||+++..+. ....|.+..+++.|.|||||+ .+|...-.. ...++|+..-..+. ++|
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~---------~vg~~~~~~~~~~~dIt~~l~~g~~N~l 133 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGK---------LVGSHEGGYTPFEFDITDYLKPGEENTL 133 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTE---------EEEEEESTTS-EEEECGGGSSSEEEEEE
T ss_pred ccccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCe---------EEeeeCCCcCCeEEeChhhccCCCCEEE
Confidence 356789999999985542 223577999999999999999 999965321 23345543211234 789
Q ss_pred EEEEEeCCccccCCC--CCCCCCcccCceec
Q 011211 454 FVLVENMGRVNYGPY--MFDEKGILQKNLHS 482 (491)
Q Consensus 454 ~ILVEN~GRvNyg~~--~~d~KGi~g~V~~~ 482 (491)
.|.|-|...-.+-+. .....||.++|.|.
T Consensus 134 ~V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 134 AVRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EEEEeecCCCceeecCcCCccCccccEEEEE
Confidence 999986544333111 12368999999874
No 38
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.88 E-value=0.0027 Score=66.05 Aligned_cols=105 Identities=24% Similarity=0.280 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCC-CeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc---c
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKP-GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL---A 102 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~---~ 102 (491)
+|.|+.+|+.|+|+||.=| |+ .|.. |..|.+ +..+..+-|+++||+|+|-.- --..|-- .
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH----------YSD~WaDPg~Q 90 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH----------YSDFWADPGKQ 90 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE-----------SSSS--BTTB-
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec----------ccCCCCCCCCC
Confidence 5789999999999999987 54 4444 555555 666666677789999999842 1133331 1
Q ss_pred CCCCeeEec-CCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccC
Q 011211 103 KKPALKLRS-SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (491)
Q Consensus 103 ~~~~~~~Rs-~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg 152 (491)
..|. .-+. +-..-.++|..|.+.++..|+.. |=.+=||||.||..
T Consensus 91 ~~P~-aW~~~~~~~l~~~v~~yT~~vl~~l~~~----G~~pd~VQVGNEin 136 (332)
T PF07745_consen 91 NKPA-AWANLSFDQLAKAVYDYTKDVLQALKAA----GVTPDMVQVGNEIN 136 (332)
T ss_dssp B--T-TCTSSSHHHHHHHHHHHHHHHHHHHHHT----T--ESEEEESSSGG
T ss_pred CCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHC----CCCccEEEeCcccc
Confidence 1121 0112 33567788999999999999764 55778999999964
No 39
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=96.70 E-value=0.011 Score=52.00 Aligned_cols=79 Identities=29% Similarity=0.358 Sum_probs=53.7
Q ss_pred CchhhccCccceEEEEEeeCCCCCCcc---eec-CCcccEEEEEeCCccCCCCCCCceEEEEE-ecc-CcceeecCCCCC
Q 011211 375 LSMESVGQMFGFLLYVSEFGGKDYGSS---LLI-SKVHDRAQVFISCPTEDNSGRPTYVGTIE-RWS-NRALSLPNFRCG 448 (491)
Q Consensus 375 ~~mE~lgQ~~GyvlY~t~i~~~~~~~~---L~~-~~v~Dra~V~vdg~~~~~~~~~~~~g~l~-r~~-~~~~~~~~~~~~ 448 (491)
+.+-+.+...|+++||+++........ |.+ ..-.-+++|||||+ ++|.-. ... +..+.+|.....
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~---------~~G~~~~~~g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGW---------FLGSYWPGIGPQTTFSVPAGILK 95 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTE---------EEEEEETTTECCEEEEE-BTTBT
T ss_pred eccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCE---------EeeeecCCCCccEEEEeCceeec
Confidence 567788899999999999965211112 332 35788999999999 999975 222 345667653222
Q ss_pred -CCcEEEEEEEeCCc
Q 011211 449 -SNISLFVLVENMGR 462 (491)
Q Consensus 449 -~~~~L~ILVEN~GR 462 (491)
..+.|.+|+.+||.
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 35678999999985
No 40
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.014 Score=59.48 Aligned_cols=112 Identities=23% Similarity=0.230 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHH---cCCeEEecCCCccccccCCCCCccccc-
Q 011211 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK---LDLLVMLRPGPYICAEWDLGGFPAWLL- 101 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~---~gL~VilrpGPyi~aEw~~GGlP~WL~- 101 (491)
=.|.|+.+|+.|+|.||.=| ||..--.-|.=.=.|++|+.+.|++|++ +||+|++.. -.-.|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF-----------HYSDfwaD 132 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF-----------HYSDFWAD 132 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec-----------cchhhccC
Confidence 36889999999999999864 7766555565555678899999998864 899999984 1122222
Q ss_pred ---cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC
Q 011211 102 ---AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (491)
Q Consensus 102 ---~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~ 153 (491)
.++|.-...-+-..-.+++-.|.+..+..+++. |=-+=||||.||--.
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e----Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE----GILPDMVQVGNETNG 183 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc----CCCccceEeccccCC
Confidence 122311112233456677888888888888764 445679999999743
No 41
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.0041 Score=66.90 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCe--eeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK--LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
-..++++++.||+||+|+.|+-|.|...-|..+. .+=.|-.--+++++.|.++|+..++-- ..=-+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHH
Confidence 4568999999999999999999999999996555 788888899999999999999976651 122479999
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCC
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIG 139 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~g 139 (491)
.+..+.-.=|..=..|.++++--++++-.+++-+..-|.
T Consensus 130 ~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE 168 (460)
T COG2723 130 QKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNE 168 (460)
T ss_pred hhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecc
Confidence 998643444444445655555555555555555543344
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.71 E-value=0.034 Score=57.36 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCC-------CcCCCC-------Ce-eeeccchhHHHHHHHHHHcCCeEEecCCCc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWN-------LHEPKP-------GK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp~~-------G~-~dF~g~~dl~~fl~la~~~gL~VilrpGPy 86 (491)
.++.-++.|++++++|||+|-.-|-+. ..+|.. |. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 378889999999999999997765542 222311 11 0133 79999999999999999874 11
Q ss_pred cccccCC----CCCccccccCCCCeeEec----C-----CHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccC
Q 011211 87 ICAEWDL----GGFPAWLLAKKPALKLRS----S-----DRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (491)
Q Consensus 87 i~aEw~~----GGlP~WL~~~~~~~~~Rs----~-----d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiEN 149 (491)
-...... -..|.|+..+.++..... . || -..+|+.|+..++..|.... +|=+||++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP-~~PeVr~~i~~~v~Eiv~~Y-----dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNP-GHPEVRDYIIDIVKEIVKNY-----DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECC-CCHHHHHHHHHHHHHHHhcC-----CCCeEEecc
Confidence 0000011 124888775444432222 1 22 24567777777777766544 577888873
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.10 E-value=0.14 Score=46.54 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCEEEEecc----C-----CCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcc
Q 011211 28 DRLLRAKALGLNTIQTYVP----W-----NLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPA 98 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~ 98 (491)
+-++.+|++|+|+|.++.- | ..|.+.|+- .. .-|..+++.|++.||+|++|...- --|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~---Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KR---DLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-Cc---CHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999999542 2 345555554 12 267999999999999999995433 22233335599
Q ss_pred ccccCCCCe------------eEecCCHHHHHHHHHHHHHHHHH
Q 011211 99 WLLAKKPAL------------KLRSSDRAYLQLVERWWGVLLPK 130 (491)
Q Consensus 99 WL~~~~~~~------------~~Rs~d~~y~~~~~~~~~~l~~~ 130 (491)
|+.++...- ..-+.+..|++.+.+-+++|+.+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 987643211 11123456887666555555543
No 44
>PRK09936 hypothetical protein; Provisional
Probab=94.56 E-value=0.092 Score=53.51 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=46.8
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccc-hhHHHHHHHHHHcCCeEEec
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-ADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~gL~Vilr 82 (491)
+++++.|++.++.+|+.||+|+=+ -|... |.=||.+. .+|.+.++.|++.||+|++.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 788999999999999999999855 35433 11188764 49999999999999999885
No 45
>smart00642 Aamy Alpha-amylase domain.
Probab=93.97 E-value=0.16 Score=47.70 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcC-------CCCCee-----eeccchhHHHHHHHHHHcCCeEEecCCCc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHE-------PKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----dF~g~~dl~~fl~la~~~gL~VilrpGPy 86 (491)
-+-+.+.|.-+|++|+|+|.+-=++.... -.+..| .|....++.++++.|+++||+||+-.=|-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44567778889999999999854332222 122222 45556799999999999999999975443
No 46
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=0.47 Score=50.94 Aligned_cols=141 Identities=26% Similarity=0.277 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEec-------------cCCCcCCCCCeee-eccchhHHHHHHHHHHcCCeEEecCCCcc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYV-------------PWNLHEPKPGKLV-FSGIADLVSFLKLCQKLDLLVMLRPGPYI 87 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~gL~VilrpGPyi 87 (491)
.+..-.+.|..++++|||||-.-| +|..- .||++- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~--~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDG--LPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccC--cCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 466778899999999999996532 23322 244431 22445889999999999999999988877
Q ss_pred ccccCCC---CCccccccCCCCeeE-ecCC-------HHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC
Q 011211 88 CAEWDLG---GFPAWLLAKKPALKL-RSSD-------RAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD 156 (491)
Q Consensus 88 ~aEw~~G---GlP~WL~~~~~~~~~-Rs~d-------~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~ 156 (491)
.+--..- --|.|+..+.|+-.. ++.. ....-+|..|+..++-.+...+ .|-++|.+--++ |..
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y-----dvDGIQfDd~fy-~~~ 213 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY-----DVDGIQFDDYFY-YPI 213 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC-----CCCceecceeec-ccC
Confidence 6531111 226777776553322 2331 1355678888887777666554 677899987765 443
Q ss_pred cHHHHHHHHHHHHH
Q 011211 157 DKEYLHHLVTLARA 170 (491)
Q Consensus 157 ~~~y~~~l~~~~~~ 170 (491)
+-.|...-...++.
T Consensus 214 ~~gy~~~~~~~y~~ 227 (418)
T COG1649 214 PFGYDPDTVTLYRY 227 (418)
T ss_pred ccccCchHHHHHHh
Confidence 33444444444443
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.59 E-value=2 Score=48.49 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=79.8
Q ss_pred HHHH-HHHHHcCCCEEEE-eccCCCcCC----CCC-----eeeeccchhHHHHHHHHHHcCCeEEecCCC-ccccc----
Q 011211 27 EDRL-LRAKALGLNTIQT-YVPWNLHEP----KPG-----KLVFSGIADLVSFLKLCQKLDLLVMLRPGP-YICAE---- 90 (491)
Q Consensus 27 ~~~l-~k~ka~G~N~V~~-yv~Wn~hEp----~~G-----~~dF~g~~dl~~fl~la~~~gL~VilrpGP-yi~aE---- 90 (491)
.++| .-+|++|+|+|.+ .|+..-... .+- .-.|.+..+|.+|++.|+++||+|||-.-+ ..+.+
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 238 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGL 238 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchh
Confidence 3454 7789999999999 776432110 100 114555679999999999999999997322 11111
Q ss_pred cCCCCCccccccCCC--------CeeEecCCHHHHHHHHHHHHHHHHH--hccccccCCCCeEEEc--------ccCccC
Q 011211 91 WDLGGFPAWLLAKKP--------ALKLRSSDRAYLQLVERWWGVLLPK--IAPLLYDIGGPIVMVQ--------IENEFG 152 (491)
Q Consensus 91 w~~GGlP~WL~~~~~--------~~~~Rs~d~~y~~~~~~~~~~l~~~--l~~~~~~~gGpII~~Q--------iENEyg 152 (491)
+.+.|.|.|...+.. ...+-..+|.-++++...++..+.. +-.+-..-=..++.++ ..||++
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~ 318 (613)
T TIGR01515 239 AEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDG 318 (613)
T ss_pred hccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccC
Confidence 112233333322110 0123334555444444444443332 1111110001222222 124443
Q ss_pred CcC--CcHHHHHHHHHHHHHhcCCceEEEEec
Q 011211 153 SYG--DDKEYLHHLVTLARAHLGKDIILYTTD 182 (491)
Q Consensus 153 ~~~--~~~~y~~~l~~~~~~~~G~~vpl~t~d 182 (491)
.-. ....|++.+.+.+++. .-++.++.=+
T Consensus 319 ~~~~~~~~~fl~~~~~~v~~~-~p~~~liaE~ 349 (613)
T TIGR01515 319 GRENLEAVDFLRKLNQTVYEA-FPGVVTIAEE 349 (613)
T ss_pred CcCChHHHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 211 2468999999999886 6677776544
No 48
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.24 E-value=0.04 Score=61.33 Aligned_cols=50 Identities=30% Similarity=0.554 Sum_probs=36.1
Q ss_pred ccccCCCCccCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCccccccee
Q 011211 298 LTSYDYDAPIKESGDVDNPKFKAIRRVVEKFSPASLPSVLPDNEKAGFGPIQ 349 (491)
Q Consensus 298 ~TSYDYdApl~E~G~~t~pKy~~lr~~i~~~~~~~~p~~P~~~~~~~yg~v~ 349 (491)
+|||||||||+ |..++|||.++|..+.++.-.....+-..+....||..+
T Consensus 301 atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg~~~ 350 (649)
T KOG0496|consen 301 ATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAKYGNLR 350 (649)
T ss_pred ccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccccccchh
Confidence 79999999999 999999999999999887543322332333444555544
No 49
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=92.04 E-value=3.3 Score=41.42 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe-cCCCccccccCCCCCccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil-rpGPyi~aEw~~GGlP~WL~ 101 (491)
...|++.|+.++++|++.|++.+ +..| ..+...+++ ..++.++.++++++||.|.. .+++ .+.+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~----- 79 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRF----- 79 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccC-----
Confidence 46899999999999999999953 2222 223444555 24789999999999998653 3221 0011
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcC-Cc-------HHHHHHHHHHHHHhcC
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DD-------KEYLHHLVTLARAHLG 173 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~-~~-------~~y~~~l~~~~~~~~G 173 (491)
+ +-+.|+.-+++..+.+++.++..+.+ |.++|.+- ..++. ++ .+ .+.++.+.+.+++. |
T Consensus 80 ---~---l~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~-G 146 (279)
T TIGR00542 80 ---P---LGSKDKAVRQQGLEIMEKAIQLARDL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAARA-Q 146 (279)
T ss_pred ---c---CCCcCHHHHHHHHHHHHHHHHHHHHh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHHc-C
Confidence 1 22335666777777777888777776 45666442 11110 11 11 24566666777775 7
Q ss_pred CceEEE
Q 011211 174 KDIILY 179 (491)
Q Consensus 174 ~~vpl~ 179 (491)
+.+-|=
T Consensus 147 v~l~lE 152 (279)
T TIGR00542 147 VTLAVE 152 (279)
T ss_pred CEEEEe
Confidence 765443
No 50
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=91.55 E-value=0.54 Score=48.80 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-------eccCCCcCCCCCeeeec-c-chhHHHHHHHHHHcCCeEEecCCCcc---ccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFS-G-IADLVSFLKLCQKLDLLVMLRPGPYI---CAE 90 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~-g-~~dl~~fl~la~~~gL~VilrpGPyi---~aE 90 (491)
++.-+..|+.+++.|+|+|-+ .|.+....|..-+.--. . ..|+.++++.++++|+++|.|.--+- -|+
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 567888999999999999977 35565555443333221 1 25999999999999999999952110 011
Q ss_pred cCCCCCccccccCCCCeeEecCC-----HHHHHHHHHHHHHHHHHhcccc
Q 011211 91 WDLGGFPAWLLAKKPALKLRSSD-----RAYLQLVERWWGVLLPKIAPLL 135 (491)
Q Consensus 91 w~~GGlP~WL~~~~~~~~~Rs~d-----~~y~~~~~~~~~~l~~~l~~~~ 135 (491)
--|.|-.+....-..|... .+|.+++.+|.-.|+..++..=
T Consensus 92 ----~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 92 ----AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred ----hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 1355554321111222221 2478888899888998888653
No 51
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.36 E-value=0.13 Score=55.48 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=101.6
Q ss_pred ceecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCc-CC---CCCeeee-ccchhHHHHHHHHHHcC
Q 011211 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EP---KPGKLVF-SGIADLVSFLKLCQKLD 76 (491)
Q Consensus 2 f~~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~la~~~g 76 (491)
|.++++.+..++..=-+.++-.++-+++|+.|+.+|++++++.+ +- |+ ++|.-+- ++..-++.|++.|.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fi---LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFI---LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEE---ecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 66677777666555555566677778889999999999999983 23 44 2332221 23458999999999999
Q ss_pred CeEEecCCCccccccCCCCCc---cccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC
Q 011211 77 LLVMLRPGPYICAEWDLGGFP---AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (491)
Q Consensus 77 L~VilrpGPyi~aEw~~GGlP---~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~ 153 (491)
|+|+++- |..==.+||.= .|--...|+-.+ -|+.++..-++|...++.-.+ ....|.+|-+-|| .
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-----~~ptI~gw~l~Ne--~ 148 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-----LDPTIAGWALRNE--P 148 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-----cChHHHHHHhcCC--c
Confidence 9999872 43322455652 244333342122 256666666777777776333 3458889999999 3
Q ss_pred cC----CcHHHHHHHHHHH
Q 011211 154 YG----DDKEYLHHLVTLA 168 (491)
Q Consensus 154 ~~----~~~~y~~~l~~~~ 168 (491)
.+ ++..+++|+++|+
T Consensus 149 lv~~p~s~N~f~~w~~emy 167 (587)
T COG3934 149 LVEAPISVNNFWDWSGEMY 167 (587)
T ss_pred cccccCChhHHHHHHHHHH
Confidence 32 4788999999997
No 52
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=91.16 E-value=0.34 Score=52.79 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=46.7
Q ss_pred eCCCCCC----hhhHH---HHHHHHHHcCCCEEEE-eccCCC-----cCCCCCe-e-------------eeccchhHHHH
Q 011211 16 LHYFRIL----PQHWE---DRLLRAKALGLNTIQT-YVPWNL-----HEPKPGK-L-------------VFSGIADLVSF 68 (491)
Q Consensus 16 ~Hy~R~p----~~~W~---~~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~G~-~-------------dF~g~~dl~~f 68 (491)
+|.|.|+ .+.|. +.|.-+|++|+++|-+ .++-+. |--.+-- | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4556655 34564 5678889999999998 454332 3222222 2 23345799999
Q ss_pred HHHHHHcCCeEEecC
Q 011211 69 LKLCQKLDLLVMLRP 83 (491)
Q Consensus 69 l~la~~~gL~Vilrp 83 (491)
++.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999973
No 53
>PRK01060 endonuclease IV; Provisional
Probab=91.16 E-value=4.4 Score=40.42 Aligned_cols=93 Identities=17% Similarity=0.308 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE---EecCCCccccccCCCCCcccccc
Q 011211 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV---MLRPGPYICAEWDLGGFPAWLLA 102 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V---ilrpGPyi~aEw~~GGlP~WL~~ 102 (491)
+++.+++++++|++.|++.+.- -+.-....++- .++.++-++++++||.+ .+ -+|| +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~------------~--- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPY------------L--- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecce------------E---
Confidence 8899999999999999997531 12211222222 27888999999999984 22 1222 1
Q ss_pred CCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEc
Q 011211 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (491)
Q Consensus 103 ~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (491)
+.+-+.|+..+++..+.+++.++..+.+ |.++|-+.
T Consensus 74 ----~nl~~~d~~~r~~s~~~~~~~i~~A~~l----ga~~vv~h 109 (281)
T PRK01060 74 ----INLGNPNKEILEKSRDFLIQEIERCAAL----GAKLLVFH 109 (281)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 1234567888888888888888887766 44555554
No 54
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=90.22 E-value=6.3 Score=39.17 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe-cCCCccccccCCCCCcccccc
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPAWLLA 102 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil-rpGPyi~aEw~~GGlP~WL~~ 102 (491)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++.++++++||.|.. .++ +.-.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~---- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRR---- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccC----
Confidence 48999999999999999999643 2222 11123443 33799999999999998653 211 1100
Q ss_pred CCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC------cHHHHHHHHHHHHHhcCCce
Q 011211 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD------DKEYLHHLVTLARAHLGKDI 176 (491)
Q Consensus 103 ~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~------~~~y~~~l~~~~~~~~G~~v 176 (491)
..+.+.|+.-++...+.+++++...+.+ |.++|-+---..+..... -.+.++.+.+++.+. |+.+
T Consensus 79 ----~~~~~~d~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv~l 149 (284)
T PRK13210 79 ----FPFGSRDPATRERALEIMKKAIRLAQDL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAA-QVML 149 (284)
T ss_pred ----cCCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHh-CCEE
Confidence 1133567776777777777777777766 345554421000000111 124677777777776 7764
Q ss_pred EE
Q 011211 177 IL 178 (491)
Q Consensus 177 pl 178 (491)
-+
T Consensus 150 ~l 151 (284)
T PRK13210 150 AV 151 (284)
T ss_pred EE
Confidence 33
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.05 E-value=6.2 Score=45.53 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEE-eccC-C---CcCCCCCe-----eeeccchhHHHHHHHHHHcCCeEEec
Q 011211 30 LLRAKALGLNTIQT-YVPW-N---LHEPKPGK-----LVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 30 l~k~ka~G~N~V~~-yv~W-n---~hEp~~G~-----~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|.-+|++|+|+|.. .|+= . .|-..+.- -.|.+..+|.+|++.|+++||.|||-
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 36779999999998 5531 0 11111111 13555679999999999999999997
No 56
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.96 E-value=7.3 Score=38.24 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48899999999999999985432 12688899999999999765
No 57
>PRK10150 beta-D-glucuronidase; Provisional
Probab=89.81 E-value=1.6 Score=49.09 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=46.2
Q ss_pred ccceEEEEEeeCCCC----CCcceecCCcccEEEEEeCCccCCCCCCCceEEEEEec-cCcceeecCC-CCCCCcEEEEE
Q 011211 383 MFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPNF-RCGSNISLFVL 456 (491)
Q Consensus 383 ~~GyvlY~t~i~~~~----~~~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~-~~~~~~~~~~-~~~~~~~L~IL 456 (491)
..|..+||+++..+. ....|.+..|.-.|.|||||+ .||.-+-- ....++|... ...+.++|.|.
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~---------~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~ 133 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQ---------EVMEHKGGYTPFEADITPYVYAGKSVRITVC 133 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCE---------EeeeEcCCccceEEeCchhccCCCceEEEEE
Confidence 568899999986541 223578999999999999999 88875431 1223444321 11223589999
Q ss_pred EEeC
Q 011211 457 VENM 460 (491)
Q Consensus 457 VEN~ 460 (491)
|.|.
T Consensus 134 v~n~ 137 (604)
T PRK10150 134 VNNE 137 (604)
T ss_pred EecC
Confidence 9874
No 58
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=89.50 E-value=0.64 Score=50.86 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=64.9
Q ss_pred EeeCCCCCChhhHHHHHHHHH-HcCCCEEEEe-cc---CCCcCC--CCC--eeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 14 GDLHYFRILPQHWEDRLLRAK-ALGLNTIQTY-VP---WNLHEP--KPG--KLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 14 G~~Hy~R~p~~~W~~~l~k~k-a~G~N~V~~y-v~---Wn~hEp--~~G--~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
|+-|..-.-.+.|+..|+.++ ++||..|++. ++ ...... ..| .|||+ .||++++...++||+..+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 344554556789999999997 8999999985 22 111111 233 29999 999999999999999766643
Q ss_pred CccccccCCCCCccccccCCCCeeEe----cCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC
Q 011211 85 PYICAEWDLGGFPAWLLAKKPALKLR----SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (491)
Q Consensus 85 Pyi~aEw~~GGlP~WL~~~~~~~~~R----s~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~ 153 (491)
=.|.++..... ..+. ..-|.-.+.+..++++++.|+..+.-.+.=.-=.+.|.||...
T Consensus 106 ----------f~p~~~~~~~~-~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~ 167 (486)
T PF01229_consen 106 ----------FMPMALASGYQ-TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDL 167 (486)
T ss_dssp ----------SB-GGGBSS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTS
T ss_pred ----------echhhhcCCCC-ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCc
Confidence 23555544321 1111 1123334555555555555554432000000013689999764
No 59
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=89.46 E-value=1.5 Score=40.91 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=77.7
Q ss_pred HHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeE
Q 011211 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (491)
Q Consensus 30 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~ 109 (491)
|+.++++|+..|+....+....... ...++++.++++++||.++.--.+. . |. .+....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~--------~---~~---~~~~~~ 59 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT--------N---FW---SPDEEN 59 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE--------S---SS---CTGTTS
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc--------c---cc---cccccc
Confidence 6789999999999976533222211 3379999999999999965531110 0 00 010113
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEccc--CccCCcCC------cHHHHHHHHHHHHHhcCCceEEEEe
Q 011211 110 RSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE--NEFGSYGD------DKEYLHHLVTLARAHLGKDIILYTT 181 (491)
Q Consensus 110 Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE--NEyg~~~~------~~~y~~~l~~~~~~~~G~~vpl~t~ 181 (491)
++..++ ++...+.+.+.++..+.+ |.+.|.+..- +....... -.+.++.+.+.+++. |+.+-+-+.
T Consensus 60 ~~~~~~-r~~~~~~~~~~i~~a~~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv~i~lE~~ 133 (213)
T PF01261_consen 60 GSANDE-REEALEYLKKAIDLAKRL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY-GVRIALENH 133 (213)
T ss_dssp TTSSSH-HHHHHHHHHHHHHHHHHH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH-TSEEEEE-S
T ss_pred cCcchh-hHHHHHHHHHHHHHHHHh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh-cceEEEecc
Confidence 444444 777777888888888877 4566777754 22222211 245777788888887 877655444
Q ss_pred cC
Q 011211 182 DG 183 (491)
Q Consensus 182 d~ 183 (491)
..
T Consensus 134 ~~ 135 (213)
T PF01261_consen 134 PG 135 (213)
T ss_dssp SS
T ss_pred cC
Confidence 33
No 60
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.47 E-value=1 Score=51.87 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-ecc-------CCCcCC---CCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEP---KPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp---~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
.+.|++.|.-+|++|+|+|++ .|+ |..+-. .+ .-.|....+|.+|++.|+++||.|||-.
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456888999999999999998 332 433311 01 1245556799999999999999999963
No 61
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=88.13 E-value=0.52 Score=46.59 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCC--eeee-------ccchhHHHHHHHHHHcCCeEEecC
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVF-------SGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~dF-------~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
.+.|.-+|++|+|+|.+-=++...+..-| .-|| ....+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999999544442221111 2233 234699999999999999999863
No 62
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.11 E-value=16 Score=42.18 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCEEEE-ecc-------CCCcCCCCCee----eeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 28 DRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~----dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
+.|.-+|++|+|+|+. .|+ |...- -|-| .|....++.+|++.|+++||.|||-.=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467889999999998 442 43211 0111 4555679999999999999999997433
No 63
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=86.07 E-value=18 Score=37.77 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=58.3
Q ss_pred eCCCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccch--hH--HHHHHHHHHcCCeEEecCCCccc
Q 011211 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIA--DL--VSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 16 ~Hy~R~---p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~--dl--~~fl~la~~~gL~VilrpGPyi~ 88 (491)
+|..|+ ..+..++.++++++.||.+=.+.+-+.++.. -+.|.|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455555 3678899999999999988777766555543 4677776543 78 99999999999999999889998
Q ss_pred cc
Q 011211 89 AE 90 (491)
Q Consensus 89 aE 90 (491)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 64
No 64
>PRK12313 glycogen branching enzyme; Provisional
Probab=85.22 E-value=1.7 Score=49.16 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEE-ecc-------CCCcCC--CCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 30 LLRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 30 l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|.-+|++|+|+|.. .|+ |...-. ..=.-.|.+..+|.+|++.|+++||.|||-
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 58899999999997 553 321110 000114556679999999999999999996
No 65
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=85.03 E-value=2.8 Score=42.76 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=71.7
Q ss_pred EEEEEeeCCCCCCh-hhHH---HHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 10 RIIGGDLHYFRILP-QHWE---DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 10 ~~~sG~~Hy~R~p~-~~W~---~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
+-+++..||+.-|. ...+ ++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 46778888877652 2233 2444433699999888543 4444 7899999999997664444444
Q ss_pred ccc---------cccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 86 YIC---------AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 86 yi~---------aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
.-+ ++|..--+|.|+.+.-. ...+++....+..-++...++..+...
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~--~~~~~~~~~~~~gi~~a~~~~~~l~~~ 252 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE--PIKDDDEAVRDYGIELIVEMCQKLLAS 252 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 333 47776778999987421 223444556667777777777777664
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.92 E-value=1.7 Score=48.32 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCc-----CCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 27 EDRLLRAKALGLNTIQT-YVP-------WNLH-----EPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.++|.-+|++|+|+|.. .|+ |... .+.+ .|.+..+|.+|++.|+++||.|||-
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45688999999999998 442 3222 1111 3555679999999999999999996
No 67
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=84.52 E-value=9 Score=40.91 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=78.7
Q ss_pred eCCCCCChhhHHHHHHHHHHcCCCEEEE-------eccCCCcCCCCCeeeec-cchhHHHHHHHHHHcCCeEEecCCCcc
Q 011211 16 LHYFRILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYI 87 (491)
Q Consensus 16 ~Hy~R~p~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~gL~VilrpGPyi 87 (491)
+.+.+..++.|. +.+|++|+.-|-. +-.|+..-..-...+-. ++.-|..+.+.|+++||++-+=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 444556677775 4678888886644 34466654322222221 2335678889999999887773222
Q ss_pred ccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHH
Q 011211 88 CAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTL 167 (491)
Q Consensus 88 ~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~ 167 (491)
.+|.. |.|...... -..+.+.+.|.++++.|+.+|.+.+..+ ||-++|- +-..+.- ...--.+.|.++
T Consensus 151 -~DW~~---p~y~~~~~~-~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-----gpd~lWf-D~~~~~~-~~~~~~~~l~~~ 218 (384)
T smart00812 151 -FDWFN---PLYAGPTSS-DEDPDNWPRFQEFVDDWLPQLRELVTRY-----KPDLLWF-DGGWEAP-DDYWRSKEFLAW 218 (384)
T ss_pred -HHhCC---Ccccccccc-ccccccchhHHHHHHHHHHHHHHHHhcC-----CCceEEE-eCCCCCc-cchhcHHHHHHH
Confidence 35653 444321111 1223456788888888888888888765 2433331 1111111 111125567777
Q ss_pred HHHhcCCc
Q 011211 168 ARAHLGKD 175 (491)
Q Consensus 168 ~~~~~G~~ 175 (491)
+++. .-+
T Consensus 219 ~~~~-qP~ 225 (384)
T smart00812 219 LYNL-SPV 225 (384)
T ss_pred HHHh-CCC
Confidence 7775 444
No 68
>PRK14706 glycogen branching enzyme; Provisional
Probab=84.29 E-value=20 Score=40.83 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=35.9
Q ss_pred HHHHHcCCCEEEE-ecc-------CCCcCC--CCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 31 LRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 31 ~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.-+|++|+|+|+. .|. |...-. ..=.-.|....+|.+|++.|+++||.|||-
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 6689999999997 332 332110 000112344579999999999999999986
No 69
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=84.18 E-value=21 Score=35.29 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=38.4
Q ss_pred eeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 15 DLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 15 ~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
++.|-+.| ++++|++++++|+..|++.. +. ..+++++.++++++||.|..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 34454554 77889999999999999932 11 13799999999999999864
No 70
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=83.92 E-value=1.8 Score=45.74 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=47.8
Q ss_pred EEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccc
Q 011211 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 12 ~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~ 88 (491)
+|=|+++...+.+.....|++|+++||..|=|- +|.|+...=+. ...+..++++|+++||.|++-..|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFTS----L~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFTS----LHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEEE----E---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEECC----CCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 455777777789999999999999999887775 68888543222 137899999999999999999777443
No 71
>PLN02960 alpha-amylase
Probab=83.42 E-value=2.4 Score=49.56 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCcCC--CCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
++.|.-+|++|+|+|+. .|+ |...-. ..=.-.|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999998 453 432211 0001134456799999999999999999973
No 72
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=83.17 E-value=2.8 Score=42.82 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeeccch--hHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~--dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
..+..++.++++|+.||.+=.+.+-..++... -+.|.|.-.+ |..++++..+++|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 47778999999999997775555554444332 2466666433 89999999999999999988888864
No 73
>PRK09505 malS alpha-amylase; Reviewed
Probab=83.14 E-value=2.5 Score=48.40 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHcCCCEEEE-eccCCCcC-----------------CCCC-----eeeeccchhHHHHHHHHHHcCCeEE
Q 011211 24 QHWEDRLLRAKALGLNTIQT-YVPWNLHE-----------------PKPG-----KLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~-yv~Wn~hE-----------------p~~G-----~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
.-+.+.|.-+|++|+|+|-+ .++=+.|. --+- .-.|....+|.++++.|+++||+||
T Consensus 230 ~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi 309 (683)
T PRK09505 230 RGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRIL 309 (683)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34677899999999999997 45433332 1111 1234455799999999999999999
Q ss_pred ecC
Q 011211 81 LRP 83 (491)
Q Consensus 81 lrp 83 (491)
|-.
T Consensus 310 lD~ 312 (683)
T PRK09505 310 FDV 312 (683)
T ss_pred EEE
Confidence 963
No 74
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=83.08 E-value=2.4 Score=46.64 Aligned_cols=114 Identities=9% Similarity=0.078 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCcCCC---CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccc
Q 011211 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK---PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~ 101 (491)
.++++++.||++|++.-|.-|.|...=|. .+..+-.|..--..+|+...++||...+-- -.=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 68999999999999999999999998885 245788888888899999999999966541 1225899998
Q ss_pred cCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEc
Q 011211 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (491)
Q Consensus 102 ~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (491)
+.++...-+..=..|+++++-=|+++..+++-+-.-|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeee
Confidence 866643333334568888888888998899887655777776665
No 75
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.90 E-value=39 Score=33.67 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHc-CCeEEecCCCccccccCCCCCcccccc
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKL-DLLVMLRPGPYICAEWDLGGFPAWLLA 102 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~-gL~VilrpGPyi~aEw~~GGlP~WL~~ 102 (491)
..|++.|+.+|++|++.|++.+........+ .....+++++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 7899999999999999999976532111111 11345899999999999 6665543 2221
Q ss_pred CCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccC
Q 011211 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (491)
Q Consensus 103 ~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiEN 149 (491)
+.+.+.++.-++.....+++.++..+.+ |-+.|.+...+
T Consensus 70 ----~~~~~~~~~~r~~~~~~~~~~i~~A~~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 ----INLASPDKEKREKSIERLKDEIERCEEL----GIRLLVFHPGS 108 (279)
T ss_pred ----eccCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECCCC
Confidence 1123345555566666667777776666 34566665543
No 76
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=82.64 E-value=2.3 Score=47.89 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEE-ecc---------------CCCcC-----CCCCee----eec--cchhHHHHHHHHHHcCCeEE
Q 011211 28 DRLLRAKALGLNTIQT-YVP---------------WNLHE-----PKPGKL----VFS--GIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~----dF~--g~~dl~~fl~la~~~gL~Vi 80 (491)
+.|.-+|++|+|+|.+ +|+ |...- |. +.| .|. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999998 443 33221 10 011 011 12689999999999999999
Q ss_pred ec
Q 011211 81 LR 82 (491)
Q Consensus 81 lr 82 (491)
|-
T Consensus 247 lD 248 (605)
T TIGR02104 247 MD 248 (605)
T ss_pred EE
Confidence 96
No 77
>PRK10785 maltodextrin glucosidase; Provisional
Probab=82.30 E-value=2.8 Score=47.22 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcCCCEEEE-eccCC--CcCCCCCee-----eeccchhHHHHHHHHHHcCCeEEec
Q 011211 25 HWEDRLLRAKALGLNTIQT-YVPWN--LHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
--.+.|.-+|++|+|+|-+ +|+=+ .|--...-| .|.+..+|.++++.|++.||+|||-
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3466788899999999998 56522 121111111 3445579999999999999999985
No 78
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=82.11 E-value=31 Score=36.84 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe----ccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe-cCCCccccccCCCCC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGF 96 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil-rpGPyi~aEw~~GGl 96 (491)
|+....+++++++++|+..|+.. ++|..-..+ -..++.++-++++++||.|.. -++-+ .-
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~--------~~ 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLF--------SH 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeecccc--------CC
Confidence 34567899999999999999974 223221110 023578999999999999764 22110 01
Q ss_pred ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEE
Q 011211 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (491)
Q Consensus 97 P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~ 145 (491)
|.|.. . -+-+.|+..+++.-+++++.+...+.+ |.+.|.+
T Consensus 95 ~~~~~---g--~las~d~~vR~~ai~~~kraId~A~eL----Ga~~v~v 134 (382)
T TIGR02631 95 PVFKD---G--GFTSNDRSVRRYALRKVLRNMDLGAEL----GAETYVV 134 (382)
T ss_pred ccccC---C--CCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEE
Confidence 22211 1 244568888877777777777777665 4454444
No 79
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=81.77 E-value=3.1 Score=46.21 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-ecc---CCCcCCCCCee-----eeccchhHHHHHHHHHHcCCeEEec
Q 011211 23 PQHWEDRLLRAKALGLNTIQT-YVP---WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G~~-----dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
-.-+.+.|.-+|++|+|+|-+ .|+ ..-|--..-.| .|....++.++++.|+++||+|||-
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 445778899999999999988 443 10110000011 2444579999999999999999984
No 80
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=81.69 E-value=2.3 Score=47.34 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-eccCCC---cCCCCCee-----eeccchhHHHHHHHHHHcCCeEEec
Q 011211 23 PQHWEDRLLRAKALGLNTIQT-YVPWNL---HEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~-yv~Wn~---hEp~~G~~-----dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
-.-+.++|.-+|++|+|+|-+ .++-+- |--.+.-| .|....+|.++++.|+++||+|||-
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD 94 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLD 94 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 445678899999999999988 444221 11011111 2445579999999999999999986
No 81
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=80.96 E-value=7.6 Score=43.26 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=75.1
Q ss_pred ceecCEeeEEEEEeeCCC-----CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC
Q 011211 2 FRKDGEPFRIIGGDLHYF-----RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (491)
Q Consensus 2 f~~dGkp~~~~sG~~Hy~-----R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g 76 (491)
|.+||.|.++-++.--+. |..-+.-+--|+..+++|+|++++. . -|.| .=+.|-++|.+.|
T Consensus 330 fkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVW---G-----GGvY------Esd~FY~lad~lG 395 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVW---G-----GGVY------ESDYFYQLADSLG 395 (867)
T ss_pred EEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEe---c-----Cccc------cchhHHHHhhhcc
Confidence 789999999998865443 3334455566899999999999985 1 2223 4589999999999
Q ss_pred CeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCc
Q 011211 77 LLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (491)
Q Consensus 77 L~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENE 150 (491)
|.|--.- =+.|| +=..|..|++.|+.=.+.=+.+|+.| ..||.+-=-||
T Consensus 396 ilVWQD~-MFACA-------------------lYPt~~eFl~sv~eEV~yn~~Rls~H-----pSviIfsgNNE 444 (867)
T KOG2230|consen 396 ILVWQDM-MFACA-------------------LYPTNDEFLSSVREEVRYNAMRLSHH-----PSVIIFSGNNE 444 (867)
T ss_pred ceehhhh-HHHhh-------------------cccCcHHHHHHHHHHHHHHHHhhccC-----CeEEEEeCCCc
Confidence 8763220 01222 22346789998887777666677665 36777765555
No 82
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=80.24 E-value=38 Score=35.40 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHH---HcCCeEEecCCCccccccCCCCC-c
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ---KLDLLVMLRPGPYICAEWDLGGF-P 97 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~gL~VilrpGPyi~aEw~~GGl-P 97 (491)
.++.++.-++.+|+.|++.-..|-.| |.|.+-|++-++..- +.+|...|+ |.+.-- =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 47888999999999999999999666 556667777776553 456666665 443211 1
Q ss_pred cccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc-ccc-cCCCCeEEEcccCccCCcCCcHHHHHHHHHHHHHhcCCc
Q 011211 98 AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP-LLY-DIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKD 175 (491)
Q Consensus 98 ~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~-~~~-~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~~~G~~ 175 (491)
.|-... .++.+-...+. .+..++.++.|++.+++ +.+ -+|-||+++=--.+ ..+-++.++.+++.++++ |+.
T Consensus 117 ~w~g~~-~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~---~pd~~~~~~~wr~~a~~~-G~~ 190 (345)
T PF14307_consen 117 RWDGRN-NEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGD---IPDIKEMIERWREEAKEA-GLP 190 (345)
T ss_pred ccCCCC-ccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECccc---ccCHHHHHHHHHHHHHHc-CCC
Confidence 122221 11222221110 02235667788888875 333 38899988744322 234578999999999998 887
Q ss_pred eEEEEec
Q 011211 176 IILYTTD 182 (491)
Q Consensus 176 vpl~t~d 182 (491)
.+.+-.+
T Consensus 191 giyii~~ 197 (345)
T PF14307_consen 191 GIYIIAV 197 (345)
T ss_pred ceEEEEE
Confidence 5544433
No 83
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.16 E-value=35 Score=33.97 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe-cCCCccccccCCCCCcccccc
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPAWLLA 102 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil-rpGPyi~aEw~~GGlP~WL~~ 102 (491)
..|++.++.++++|+..|+..+. ..++ .....+++ ..+++++.++++++||.|.. .++. . .
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~----------~-----~ 82 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSA----------H-----R 82 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccc----------c-----c
Confidence 36999999999999999999632 1111 01122333 23789999999999998753 2211 0 0
Q ss_pred CCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC--c------HHHHHHHHHHHHHhcCC
Q 011211 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD--D------KEYLHHLVTLARAHLGK 174 (491)
Q Consensus 103 ~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~--~------~~y~~~l~~~~~~~~G~ 174 (491)
+ ..+-+.|+.-++...+.+++.++..+.+ |.++|-+.-. +. .++. + .+.++.|.+.++++ |+
T Consensus 83 --~-~~~~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~i~~~~~-~~-~~~~~~~~~~~~~~~~l~~l~~~A~~~-GV 152 (283)
T PRK13209 83 --R-FPLGSEDDAVRAQALEIMRKAIQLAQDL----GIRVIQLAGY-DV-YYEQANNETRRRFIDGLKESVELASRA-SV 152 (283)
T ss_pred --c-cCCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECCc-cc-cccccHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 0 0112456666777777777777777766 5566654210 00 0111 1 34567777777776 77
Q ss_pred ceEEE
Q 011211 175 DIILY 179 (491)
Q Consensus 175 ~vpl~ 179 (491)
.+-+=
T Consensus 153 ~i~iE 157 (283)
T PRK13209 153 TLAFE 157 (283)
T ss_pred EEEEe
Confidence 65443
No 84
>PRK09989 hypothetical protein; Provisional
Probab=79.67 E-value=35 Score=33.67 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
-.+++|++++++|+..|++..+|. .+.+++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 367899999999999999954432 1467788889999999876
No 85
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=79.55 E-value=9.7 Score=38.28 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccc--------------------
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC-------------------- 88 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~-------------------- 88 (491)
..+++|++|++.|-+- |..++-.|.=+ +..+.+=++.|.++||.+|+|.|=-.-
T Consensus 78 S~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~ 151 (250)
T PRK00042 78 SAEMLKDLGVKYVIIG-----HSERRQYFGET-DELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALA 151 (250)
T ss_pred CHHHHHHCCCCEEEeC-----cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHc
Confidence 4678999999999887 66666555433 234444445599999999999874210
Q ss_pred ----cccCCCCC---ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHh
Q 011211 89 ----AEWDLGGF---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (491)
Q Consensus 89 ----aEw~~GGl---P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l 131 (491)
++|..=-+ |.|..-. + ++.+|...+.+.++++..+..+
T Consensus 152 ~~~~~~~~~~vIAYEPvWAIGt-G----~~as~~~~~~v~~~Ir~~l~~~ 196 (250)
T PRK00042 152 GLSAEQFANLVIAYEPVWAIGT-G----KTATPEQAQEVHAFIRAVLAEL 196 (250)
T ss_pred cCCHHHhCCEEEEECCHHHhCC-C----CCCCHHHHHHHHHHHHHHHHHh
Confidence 00110011 6676652 3 4678999999999988887654
No 86
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.28 E-value=58 Score=32.15 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~ 103 (491)
..|++.|+.++++|++.|++..-.. |+-.+ +++ ..+++++-++++++||.|..- +| . .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~-~~-~-----~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGY-TP-E-----TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEe-cC-c-----ccCcCcccc--
Confidence 3599999999999999999842110 11111 222 237899999999999997542 11 0 123333221
Q ss_pred CCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC-------cHHHHHHHHHHHHHhcCCce
Q 011211 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-------DKEYLHHLVTLARAHLGKDI 176 (491)
Q Consensus 104 ~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~-------~~~y~~~l~~~~~~~~G~~v 176 (491)
..++.-+++..+.+++.++..+.+ |.+.|.+-.-.. +.-.. -.+.++.|.+.+.+. |+.+
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~~l----Ga~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv~l 145 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAKEM----NAGYTLISAAHA-GYLTPPNVIWGRLAENLSELCEYAENI-GMDL 145 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHc-CCEE
Confidence 224445555555666666665554 445544422111 11011 234677777777776 7654
No 87
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=78.43 E-value=4.7 Score=44.97 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHcCCCEEEE-eccCCCcCCCC-Cee----------eeccchhHHHHHHHHHHcCCeEEec
Q 011211 25 HWEDRLLRAKALGLNTIQT-YVPWNLHEPKP-GKL----------VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~-G~~----------dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
-+.++|.-+|++|+++|-+ .|+-. |.. .-| +|....||.++++.|+++||+|||-
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD 100 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILD 100 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4568899999999999988 45421 111 112 3344569999999999999999985
No 88
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=78.22 E-value=3.2 Score=46.43 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEe-ccCCCcCCCCCee--------eeccc----hhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPGKL--------VFSGI----ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~--------dF~g~----~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
.+.=++.|..|+...||.|+.| ..|.+|.|-|+.= |+.++ .-+...|+.|++.|++++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 5677889999999999999999 8899999976643 33332 268899999999999988632112122
Q ss_pred cc--CCCCCccccccC
Q 011211 90 EW--DLGGFPAWLLAK 103 (491)
Q Consensus 90 Ew--~~GGlP~WL~~~ 103 (491)
+. ..|=.|.|-+-.
T Consensus 197 ~~~~~~gv~~eW~ly~ 212 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLYK 212 (559)
T ss_dssp TT--S--SS-GGBEEE
T ss_pred cCcccccCCchhhhhh
Confidence 22 245668887543
No 89
>PRK14565 triosephosphate isomerase; Provisional
Probab=78.13 E-value=6.6 Score=39.20 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCC-------------
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------------- 95 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GG------------- 95 (491)
..+++|++|++.|-+- |..++-.|+=+ +..+.+=++.|.++||.+|+|.|=..- |-+.|-
T Consensus 77 S~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE~~e-~r~~~~~~~~~~~Ql~~~l 149 (237)
T PRK14565 77 SAKMLKECGCSYVILG-----HSERRSTFHET-DSDIRLKAESAIESGLIPIICVGETLE-DRENGMTKDVLLEQCSNCL 149 (237)
T ss_pred CHHHHHHcCCCEEEEC-----cccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCCCHH-HHHccChHHHHHHHHHHHh
Confidence 3568899999988876 65555444333 223333348999999999999885321 112221
Q ss_pred -------C---ccccccCCCCeeEecCCHHHHHHHHHHHHHH
Q 011211 96 -------F---PAWLLAKKPALKLRSSDRAYLQLVERWWGVL 127 (491)
Q Consensus 96 -------l---P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l 127 (491)
+ |.|.... + ++.+|.+.+++.+++++.
T Consensus 150 ~~~~~ivIAYEPvWAIGt-G----~~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 150 PKHGEFIIAYEPVWAIGG-S----TIPSNDAIAEAFEIIRSY 186 (237)
T ss_pred cCCCCEEEEECCHHHhCC-C----CCCCHHHHHHHHHHHHHh
Confidence 1 6677652 3 478999999999888876
No 90
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=77.30 E-value=9.4 Score=29.61 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5667888999999999999999732 333 58877765 4788999999999988764
No 91
>PLN02361 alpha-amylase
Probab=77.04 E-value=5.5 Score=42.76 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---cCCCCCe-e----eeccchhHHHHHHHHHHcCCeEEec
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGK-L----VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~-~----dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.+.|.-++++|+++|-+.=+... |--.+.. | .|....+|.++++.|+++||+||+-
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D 95 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMAD 95 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 55677889999999998544322 2222222 2 2344569999999999999999986
No 92
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=76.80 E-value=7.1 Score=46.84 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=56.9
Q ss_pred cceEEEEEeeCCCC----CCcceecCCcccEEEEEeCCccCCCCCCCceEEEEEec-cCcceeecCCCCCCCcEEEEEEE
Q 011211 384 FGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPNFRCGSNISLFVLVE 458 (491)
Q Consensus 384 ~GyvlY~t~i~~~~----~~~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~-~~~~~~~~~~~~~~~~~L~ILVE 458 (491)
.|--+||+++..+. ....|.+.+|.-.|+|+|||+ +||.-+.. ....++|...-..+.++|.|.|.
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~---------~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~ 178 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQ---------YVGFSKGSRLTAEFDISAMVKTGDNLLCVRVM 178 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCE---------EeccccCCCccEEEEcchhhCCCccEEEEEEE
Confidence 35679999986541 223577999999999999999 77764321 12234442210124589999998
Q ss_pred eCCccccCCCCC--CCCCcccCceeccce
Q 011211 459 NMGRVNYGPYMF--DEKGILQKNLHSMLG 485 (491)
Q Consensus 459 N~GRvNyg~~~~--d~KGi~g~V~~~~~~ 485 (491)
+...-.|-...+ -.-||..+|.|-...
T Consensus 179 ~~~d~s~le~qd~w~~sGI~R~V~L~~~p 207 (1021)
T PRK10340 179 QWADSTYLEDQDMWWLAGIFRDVYLVGKP 207 (1021)
T ss_pred ecCCCCccccCCccccccccceEEEEEeC
Confidence 543323221111 137999999876543
No 93
>PRK14705 glycogen branching enzyme; Provisional
Probab=76.49 E-value=5 Score=48.77 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCEEEE-ecc-------CCCcC--CCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 29 RLLRAKALGLNTIQT-YVP-------WNLHE--PKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~-yv~-------Wn~hE--p~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.|.-+|++|+|+|+. .|+ |.+.- ...=.-.|....||.+|++.|+++||.|||-
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 368899999999998 452 43211 0000114555679999999999999999996
No 94
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=76.10 E-value=38 Score=36.35 Aligned_cols=164 Identities=17% Similarity=0.108 Sum_probs=89.6
Q ss_pred eCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCC----Ceeeecc---chhHHHHHHHHHHcCCeEEecCCCccc
Q 011211 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKP----GKLVFSG---IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 16 ~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g---~~dl~~fl~la~~~gL~VilrpGPyi~ 88 (491)
-.|+.+..+.-.+.+++++++|++.+.+---|....... |.+--+- ..-|..+.+.+++.||+.-|+..|.++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456777788888999999999999888877786542222 3332111 124999999999999999999888766
Q ss_pred cccC--CCCCccccccCCCCee--------EecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC--
Q 011211 89 AEWD--LGGFPAWLLAKKPALK--------LRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-- 156 (491)
Q Consensus 89 aEw~--~GGlP~WL~~~~~~~~--------~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~-- 156 (491)
+.=+ .-..|.|++....... +-.++|...+++...+.+++....=-.++=..+.-+ .|.|+-..
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~----~~~~~~~~~~ 205 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI----TEAGSPSLPE 205 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T----TS-SSTTS-G
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC----CCCCCCCchH
Confidence 4311 1246999987543111 223567777766665555554332111110011111 12222211
Q ss_pred -cHHHHHH---HHHHHHHhcCCceEEEEecCC
Q 011211 157 -DKEYLHH---LVTLARAHLGKDIILYTTDGG 184 (491)
Q Consensus 157 -~~~y~~~---l~~~~~~~~G~~vpl~t~d~~ 184 (491)
-.+|..- +.+.+++. .-+|.+-.|.++
T Consensus 206 ~~~~~~~~~y~l~~~L~~~-~P~v~iE~CssG 236 (394)
T PF02065_consen 206 GYHRYVLGLYRLLDRLRAR-FPDVLIENCSSG 236 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTSEEEE-BTT
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCcEEEeccCC
Confidence 2344442 33444554 667888888865
No 95
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=76.04 E-value=25 Score=36.09 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc----CCCcCC----------------CCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP----------------KPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
+.+..++.++.|...++|.++.++- |.+--+ ..|.|.-+ ++..+++.|++.|+.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEE
Confidence 5788899999999999999999987 755321 12233333 999999999999999997
Q ss_pred c
Q 011211 82 R 82 (491)
Q Consensus 82 r 82 (491)
.
T Consensus 91 E 91 (303)
T cd02742 91 E 91 (303)
T ss_pred e
Confidence 5
No 96
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=76.02 E-value=15 Score=39.37 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
..+.|+++++.+|++||+....-+- ....+..+ .|...++.|++.|+++.+.+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 6899999999999999999988764 22223223 78999999999999999884
No 97
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=75.12 E-value=3.2 Score=41.67 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
+...++-|+.+|++||++|++- .|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 4567888999999999999986 5666665 23788999999999999999876
No 98
>PRK12677 xylose isomerase; Provisional
Probab=74.68 E-value=62 Score=34.53 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCCCEEEEe----ccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe-cCCCccccccCCCCCccc
Q 011211 25 HWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPAW 99 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil-rpGPyi~aEw~~GGlP~W 99 (491)
.+++++++++++|+..|+.. ++|.... .+....+.++.+++++.||.|.. .|.-| .-|.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-------~~~~~~~~~lk~~l~~~GL~v~~v~~n~f--------~~p~~ 96 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATD-------AERDRIIKRFKKALDETGLVVPMVTTNLF--------THPVF 96 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCCh-------hhhHHHHHHHHHHHHHcCCeeEEEecCCC--------CCccc
Confidence 57899999999999999884 2221111 11123589999999999999774 43211 11222
Q ss_pred cccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 100 L~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
. .. -+-+.|+.-++...+.+++.+..-+.+
T Consensus 97 ~---~g--~lts~d~~~R~~Ai~~~~r~IdlA~eL 126 (384)
T PRK12677 97 K---DG--AFTSNDRDVRRYALRKVLRNIDLAAEL 126 (384)
T ss_pred c---CC--cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11 245668888888777888888777766
No 99
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.96 E-value=30 Score=31.99 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCC------CCeeeeccchhHHHHHHHHHHcCCeEEec-CCCccccccCCCCC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPK------PGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~------~G~~dF~g~~dl~~fl~la~~~gL~Vilr-pGPyi~aEw~~GGl 96 (491)
...++..+.+++.|+..+....+-+...+. +... -.....+.+.+++|++.|...+.- +|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDER-EEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHH-HHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhh-HHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 345667788899999977765443333321 1111 112348999999999999996554 331
Q ss_pred ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHHHHh
Q 011211 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAH 171 (491)
Q Consensus 97 P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~~ 171 (491)
| ...+ ......-++.+.+.+++++++.+++- |.+-+||..+.......-.+.+.+++++.
T Consensus 95 --~--~~~~----~~~~~~~~~~~~~~l~~l~~~a~~~g-------v~i~lE~~~~~~~~~~~~~~~~~~~l~~~ 154 (213)
T PF01261_consen 95 --Y--PSGP----EDDTEENWERLAENLRELAEIAEEYG-------VRIALENHPGPFSETPFSVEEIYRLLEEV 154 (213)
T ss_dssp --E--SSST----TSSHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEE-SSSSSSSEESSHHHHHHHHHHH
T ss_pred --c--cccc----CCCHHHHHHHHHHHHHHHHhhhhhhc-------ceEEEecccCccccchhhHHHHHHHHhhc
Confidence 1 0001 12233667777888888999888763 44789999887653220034555555554
No 100
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=73.92 E-value=7.2 Score=40.29 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCC--eeeeccch--hHHHHHHHHHHcCCeEEecCCCccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~dF~g~~--dl~~fl~la~~~gL~VilrpGPyi~ 88 (491)
..+.-++.++++++.||.+=.+.+-|.... ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 466778899999999988877766665443 344 78777544 9999999999999999997667664
No 101
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.71 E-value=52 Score=34.06 Aligned_cols=67 Identities=7% Similarity=0.139 Sum_probs=48.5
Q ss_pred EEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEecc--CCCcC---C------------------------CCCeeeecc
Q 011211 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP--WNLHE---P------------------------KPGKLVFSG 61 (491)
Q Consensus 11 ~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~--Wn~hE---p------------------------~~G~~dF~g 61 (491)
++--+=||+ +.+..++.|+.|...++|+++.++- |.+-- | ..|.|.
T Consensus 6 mLD~aR~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT--- 80 (326)
T cd06564 6 MLDVGRKYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT--- 80 (326)
T ss_pred EEEccCCCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---
Confidence 333444664 6899999999999999999998654 33311 1 112222
Q ss_pred chhHHHHHHHHHHcCCeEEec
Q 011211 62 IADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 62 ~~dl~~fl~la~~~gL~Vilr 82 (491)
..++..+++.|++.|+.||..
T Consensus 81 ~~di~eiv~yA~~rgI~vIPE 101 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPE 101 (326)
T ss_pred HHHHHHHHHHHHHcCCeEecc
Confidence 249999999999999999975
No 102
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=73.25 E-value=14 Score=45.52 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred eeCCCCC--ChhhHHHHHHHHHHcCCCEEEE-ecc-CC---CcCCCCCee----ee----ccchhHHHHHHHHHHc-CCe
Q 011211 15 DLHYFRI--LPQHWEDRLLRAKALGLNTIQT-YVP-WN---LHEPKPGKL----VF----SGIADLVSFLKLCQKL-DLL 78 (491)
Q Consensus 15 ~~Hy~R~--p~~~W~~~l~k~ka~G~N~V~~-yv~-Wn---~hEp~~G~~----dF----~g~~dl~~fl~la~~~-gL~ 78 (491)
+-...++ +-..|+++|+.+|++|.|+|.. .++ =. ..=-..+++ +| .+..|+.++++.|++. ||+
T Consensus 121 qTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~ 200 (1464)
T TIGR01531 121 QTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVL 200 (1464)
T ss_pred eeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCE
Confidence 3344454 4578999999999999999987 444 11 100112222 23 2567899999999985 999
Q ss_pred EEecCCCccccccCCCCC-ccccccCCCCeeEecCCHHHHHHH
Q 011211 79 VMLRPGPYICAEWDLGGF-PAWLLAKKPALKLRSSDRAYLQLV 120 (491)
Q Consensus 79 VilrpGPyi~aEw~~GGl-P~WL~~~~~~~~~Rs~d~~y~~~~ 120 (491)
+|+-.= |+.=+- =.||.+ +|+.-....+.+||+++
T Consensus 201 ~ilDvV------~NHTa~ds~Wl~e-HPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 201 SITDIV------FNHTANNSPWLLE-HPEAAYNCITSPHLRPA 236 (1464)
T ss_pred EEEEee------ecccccCCHHHHh-ChHhhcCCCCCchhhhH
Confidence 999721 222222 336654 56544444444455543
No 103
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.14 E-value=10 Score=38.90 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=52.5
Q ss_pred CCCCChhhHHHHHHHHHHcCCC--EEEEeccCCCcCCCCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 18 YFRILPQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
+.....+.-.+.++++++.|+. +|.+-..|- ..-|.|.|.-. -|..++++..++.|+++++..=|+|+.
T Consensus 24 ~~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 24 KADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 3456688889999999999965 555544552 34566766532 389999999999999999988788764
No 104
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=72.83 E-value=32 Score=36.78 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=72.7
Q ss_pred HHcCCCEEEEecc---------------CCCcC---CCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCC
Q 011211 34 KALGLNTIQTYVP---------------WNLHE---PKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (491)
Q Consensus 34 ka~G~N~V~~yv~---------------Wn~hE---p~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GG 95 (491)
|-+|||.+|.-|= |...| +..|.|||+.+..=..||+.|++.|+..++-. .=-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 4689999998653 32222 46789999877667779999999999977642 124
Q ss_pred CccccccCCCCe---eEec-CCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCc-------CC------cH
Q 011211 96 FPAWLLAKKPAL---KLRS-SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-------GD------DK 158 (491)
Q Consensus 96 lP~WL~~~~~~~---~~Rs-~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~-------~~------~~ 158 (491)
.|.|+++..... ...+ --+...++-..|+..++++++.+ |=+|=-+--=||.-.- |+ ..
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~----GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a 203 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW----GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQA 203 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT----T--EEEEE--S-TTS-GG--SS-B----HHHHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc----CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHH
Confidence 588887753210 0000 12345666677777777777443 3366666677887531 11 46
Q ss_pred HHHHHHHHHHHHhcCCceEEEEecCC
Q 011211 159 EYLHHLVTLARAHLGKDIILYTTDGG 184 (491)
Q Consensus 159 ~y~~~l~~~~~~~~G~~vpl~t~d~~ 184 (491)
+.++.|...+++. |++..+..+|..
T Consensus 204 ~vI~~L~~~L~~~-GL~t~I~~~Ea~ 228 (384)
T PF14587_consen 204 DVIRALDKALKKR-GLSTKISACEAG 228 (384)
T ss_dssp HHHHHHHHHHHHH-T-S-EEEEEEES
T ss_pred HHHHHHHHHHHhc-CCCceEEecchh
Confidence 7889999999888 998777666653
No 105
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=72.11 E-value=8.3 Score=43.71 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-ecc-------CCCcCCCCCee----eeccchhHHHHHHHHHHcCCeEEec
Q 011211 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~----dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.+.=.+.|.-+|+||+++|+. .|. |..--- |-| .|....||.+||+.|+++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 455567888999999999998 332 543210 001 2334469999999999999999996
No 106
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.34 E-value=81 Score=32.37 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecc----CCCcC-CC--CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCC
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVP----WNLHE-PK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE-p~--~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GG 95 (491)
.++-++.++.|...|+|.+..|+- +.-+. -. +|.|. ..++.++++.|++.|+.||-..--.-+.|+-. -
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l-~ 91 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLEFIL-K 91 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHHHHH-h
Confidence 678899999999999999999753 32221 11 23332 24999999999999999997632222222110 0
Q ss_pred Ccccc--ccCC-CCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEccc-----CccCCcCCc---HHHHHHH
Q 011211 96 FPAWL--LAKK-PALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE-----NEFGSYGDD---KEYLHHL 164 (491)
Q Consensus 96 lP~WL--~~~~-~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiE-----NEyg~~~~~---~~y~~~l 164 (491)
.|... .... +.-.+...+|.-.+-+++.++++++....-.+.=||-=+ .++. .+.+..+.. ..|+..+
T Consensus 92 ~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~-~~~g~~~~~~~~~~~~~~~l~~~~~~~v 170 (301)
T cd06565 92 HPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEA-YDLGRGRSLRKHGNLGRGELYLEHLKKV 170 (301)
T ss_pred CcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcc-cccCCCHHHHHhcCCCHHHHHHHHHHHH
Confidence 01110 0000 001333456666666666666666654422221122210 1110 000111112 4667777
Q ss_pred HHHHHHhcCCceEEEEec
Q 011211 165 VTLARAHLGKDIILYTTD 182 (491)
Q Consensus 165 ~~~~~~~~G~~vpl~t~d 182 (491)
.+.+++. |.. |++=.|
T Consensus 171 ~~~v~~~-g~~-~~~W~D 186 (301)
T cd06565 171 LKIIKKR-GPK-PMMWDD 186 (301)
T ss_pred HHHHHHc-CCE-EEEEhH
Confidence 7777876 875 444344
No 107
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=71.32 E-value=9.7 Score=38.17 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=54.9
Q ss_pred eCCCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCee--eecc--chhHHHHHHHHHHcCCeEEecCCCcc
Q 011211 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL--VFSG--IADLVSFLKLCQKLDLLVMLRPGPYI 87 (491)
Q Consensus 16 ~Hy~R~---p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--dF~g--~~dl~~fl~la~~~gL~VilrpGPyi 87 (491)
+|..|. ..+...+.++.+++.||.+=.+.+-+.+.+. -+.| +|+- --|..++++..++.|++|++..=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344444 4778899999999999997777777666554 4666 5543 23899999999999999999988887
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.09 E-value=9.4 Score=38.17 Aligned_cols=52 Identities=13% Similarity=0.365 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
...++-++.+|++||++|++- .|..+++ ..+..++|+.++++||+|+--.|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS---------~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEIS---------DGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEc---------CCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 566777889999999999885 6777665 338889999999999999988763
No 109
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.47 E-value=11 Score=39.00 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCC-----CCCeeeeccch--hHHHHHHHHHHcCCeEEecCCCccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-----KPGKLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~dF~g~~--dl~~fl~la~~~gL~VilrpGPyi~ 88 (491)
..+...+.++++|+.||-+=.+.+-+.++.. .-|.|+|+-.+ |..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 3677899999999999887766665444442 23567776433 9999999999999999998777775
No 110
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=69.99 E-value=1.2e+02 Score=29.97 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=66.7
Q ss_pred EeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCe-eeeccchhHHHHHHHHHHcCCeEEecCCCccccccC
Q 011211 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (491)
Q Consensus 14 G~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~ 92 (491)
|+.+..+-+ -++.|+.+.++|++.|+... .+|..-. -+++ ..+++++.++++++||.+.+- +||
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~------ 67 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APY------ 67 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCc------
Confidence 455555555 34789999999999999953 3332210 0222 227899999999999986653 232
Q ss_pred CCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEc
Q 011211 93 LGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (491)
Q Consensus 93 ~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (491)
+ +.+.+.|+..+++..+++++.+...+.+ |.++|.+.
T Consensus 68 ------~-------~nl~s~d~~~r~~~~~~l~~~i~~A~~l----Ga~~vv~h 104 (273)
T smart00518 68 ------L-------INLASPDKEKVEKSIERLIDEIKRCEEL----GIKALVFH 104 (273)
T ss_pred ------e-------ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 1 1244668888888888888888877765 45655554
No 111
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=69.69 E-value=10 Score=39.84 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=68.4
Q ss_pred EEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHH
Q 011211 40 TIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQL 119 (491)
Q Consensus 40 ~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~ 119 (491)
.|.++|.|+.+--+. -=...|+.|+++|++|+-- |.-||+ +-..|+..- ++. ++ +.
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~l-----L~~-~~---~~ 87 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLEDF-----LKK-DE---DG 87 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHHH-----hcc-Cc---cc
Confidence 367777787654321 1156788999999999865 556776 344565431 222 11 12
Q ss_pred HHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC---cHHHHHHHHHHHHHh-cCCceEEEEecC
Q 011211 120 VERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD---DKEYLHHLVTLARAH-LGKDIILYTTDG 183 (491)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~---~~~y~~~l~~~~~~~-~G~~vpl~t~d~ 183 (491)
..++.++|++..+.+-+ .| +.+-+||..+.-.. -.++++.|++.+++. -+..|..|.+-.
T Consensus 88 ~~~~a~kLv~lak~yGf--DG--w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t 151 (339)
T cd06547 88 SFPVADKLVEVAKYYGF--DG--WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMT 151 (339)
T ss_pred chHHHHHHHHHHHHhCC--Cc--eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC
Confidence 34566778888887655 23 66778887731111 245666666666552 134577776553
No 112
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=68.98 E-value=7.8 Score=44.50 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCEEEE-ecc-C--CC----------cCCCCCee-----ee---ccchhHHHHHHHHHHcCCeEEec
Q 011211 29 RLLRAKALGLNTIQT-YVP-W--NL----------HEPKPGKL-----VF---SGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~-yv~-W--n~----------hEp~~G~~-----dF---~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.|.-+|++|+|+|.. .|+ . +. |--.+..| .| ....+|.++++.|+++||+|||-
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlD 264 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILD 264 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 477899999999998 554 1 00 11111111 12 12458999999999999999997
No 113
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.94 E-value=14 Score=44.55 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=55.7
Q ss_pred cceEEEEEeeCCCC---C--CcceecCCcccEEEEEeCCccCCCCCCCceEEEEEecc-CcceeecCCCCCCCcEEEEEE
Q 011211 384 FGFLLYVSEFGGKD---Y--GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSNISLFVLV 457 (491)
Q Consensus 384 ~GyvlY~t~i~~~~---~--~~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~-~~~~~~~~~~~~~~~~L~ILV 457 (491)
.|-.+||+++..+. . ...|.+..|.-.+.|+|||+ ++|.-.... ...++|...--.+.++|.|.|
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~---------~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V 189 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGR---------WVGYSQDSRLPAEFDLSPFLRAGENRLAVMV 189 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCE---------EEEeecCCCceEEEEChhhhcCCccEEEEEE
Confidence 57889999986542 1 24578999999999999999 888643211 122333211002457888888
Q ss_pred EeCCccccCCCC--CCCCCcccCceeccc
Q 011211 458 ENMGRVNYGPYM--FDEKGILQKNLHSML 484 (491)
Q Consensus 458 EN~GRvNyg~~~--~d~KGi~g~V~~~~~ 484 (491)
-..-.-+|-... -...||..+|.|-..
T Consensus 190 ~~~sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 190 LRWSDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred EecCCCCccccCCceeeccccceEEEEEc
Confidence 533222221110 113699999987544
No 114
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=68.43 E-value=11 Score=38.95 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=55.6
Q ss_pred eCCCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 16 ~Hy~R~---p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
+|..|+ ..+..++.++++++.+|.+=.+.+-+.+.. .-+.|+|+.. -|..++++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 344454 467789999999999998777766644433 3467777643 399999999999999999988888874
No 115
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.38 E-value=14 Score=38.15 Aligned_cols=67 Identities=6% Similarity=-0.017 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC---CCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP---KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
.+.-.+.++++++.+|.+=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++..=|+|+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~ 99 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ 99 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC
Confidence 456788899999999988777765443332 1234666533 389999999999999999988787753
No 116
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=68.28 E-value=12 Score=43.84 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC-----cCCCC---C--eeeeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNL-----HEPKP---G--KLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~-----hEp~~---G--~~dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
.-+.|.+.|.-++++|+++|.+-=++.. |--.. . .-.|.+..++.+|++.|+++||.||+-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3567899999999999999987322221 11100 0 123456789999999999999999997444
No 117
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=68.05 E-value=9.1 Score=45.23 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHcCCeEEec
Q 011211 63 ADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 63 ~dl~~fl~la~~~gL~Vilr 82 (491)
.++.++++.|+++||.|||-
T Consensus 404 ~Efk~mV~alH~~Gi~VIlD 423 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMD 423 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 37999999999999999986
No 118
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=66.94 E-value=8.8 Score=46.92 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCEEEE-eccCCCcCCC---CCe-----e----------eec--cchhHHHHHHHHHHcCCeEEec
Q 011211 28 DRLLRAKALGLNTIQT-YVPWNLHEPK---PGK-----L----------VFS--GIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G~-----~----------dF~--g~~dl~~fl~la~~~gL~Vilr 82 (491)
..|.-+|++|+|+|.. .|+=...|.. .|. | .|. +..++.++++.|+++||.|||-
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEE
Confidence 3466899999999998 5552222211 110 1 223 5679999999999999999997
No 119
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.84 E-value=30 Score=35.09 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=56.0
Q ss_pred eecCEeeEEEEEeeCCCCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec--cchhHHHHHHHHHHcCCeE
Q 011211 3 RKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 3 ~~dGkp~~~~sG~~Hy~R~-p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~la~~~gL~V 79 (491)
.+.+.+++++.| +--+ +++.-.+..+++|++|+..++.|.+= |+---+.|. |...+..+-+.|++.||.+
T Consensus 22 ~~g~~~~~~iaG---PCsie~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~ 94 (266)
T PRK13398 22 VIGGEEKIIIAG---PCAVESEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILKEVGDKYNLPV 94 (266)
T ss_pred EEcCCCEEEEEe---CCcCCCHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHHHHHHHcCCCE
Confidence 455568888888 2222 37788888999999999999999664 332234666 4678999999999999999
Q ss_pred EecC
Q 011211 80 MLRP 83 (491)
Q Consensus 80 ilrp 83 (491)
+-.|
T Consensus 95 ~te~ 98 (266)
T PRK13398 95 VTEV 98 (266)
T ss_pred EEee
Confidence 8874
No 120
>PRK03705 glycogen debranching enzyme; Provisional
Probab=66.70 E-value=10 Score=43.41 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEE-eccCCCcCCC-------------CCee-----eecc-----chhHHHHHHHHHHcCCeEEec
Q 011211 29 RLLRAKALGLNTIQT-YVPWNLHEPK-------------PGKL-----VFSG-----IADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~-yv~Wn~hEp~-------------~G~~-----dF~g-----~~dl~~fl~la~~~gL~Vilr 82 (491)
.|.-+|++|+|+|.. .|+=...++. +-.| .|.. ..++.++++.|+++||+|||-
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 488999999999998 4431111111 0000 1222 147999999999999999996
No 121
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=66.57 E-value=12 Score=46.85 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCe---e----------eeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK---L----------VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~---~----------dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
+-+.|.+.|.-+|++|+|+|-+-=++ +..+|. | .|.+..++.++++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45779999999999999999884223 222221 1 3446679999999999999999997444
No 122
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=66.37 E-value=1.6 Score=43.00 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||+||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4567889999999999999997665544333344 9999999999999999999
No 123
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=65.94 E-value=14 Score=43.47 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCC------eee-------eccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG------KLV-------FSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G------~~d-------F~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
..-+.|.+.|.-++++|+|+|-+-=++ +..+| ..| |.+..++.+|++.|+++||.|||-.=|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 345779999999999999999884222 22222 113 346679999999999999999997544
No 124
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=65.89 E-value=14 Score=38.52 Aligned_cols=68 Identities=4% Similarity=-0.100 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccch--hHHHHHHHHHHcCCeEEecCCCccccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYICAE 90 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~gL~VilrpGPyi~aE 90 (491)
..+.-++.++++++.||.+=.+.+-+.+. ...+.|+|+-.+ |..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 36677889999999999887776664432 345678776443 899999999999999999988999854
No 125
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=65.38 E-value=35 Score=34.45 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=69.3
Q ss_pred eEEEEEeeCCCCCChh-hH---HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCe--EEec
Q 011211 9 FRIIGGDLHYFRILPQ-HW---EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL--VMLR 82 (491)
Q Consensus 9 ~~~~sG~~Hy~R~p~~-~W---~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~--Vilr 82 (491)
.+-+++..|+++-|.. .- -++|++=.++|.+.+-|-. .||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 3678888888866532 12 2446666689999888843 34555 889999999999765 4444
Q ss_pred CCCcccc-------ccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc
Q 011211 83 PGPYICA-------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (491)
Q Consensus 83 pGPyi~a-------Ew~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~ 133 (491)
.-|-... +|..-.+|.|+.+.-. +...+....+++.-++..+++..+..
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~--~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE--KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 3565678999987421 12222235666677777777777654
No 126
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.27 E-value=18 Score=36.84 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCC--------CCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCcc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP--------KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYI 87 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--------~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi 87 (491)
+.+.-++.++++|+.||-+=.+++-..+|.- .-+.|+|+-. -|..++++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4677889999999999988777765444432 2356777643 3999999999999999998765543
No 127
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=64.94 E-value=11 Score=45.57 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHcCCeEEecC
Q 011211 63 ADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 63 ~dl~~fl~la~~~gL~Vilrp 83 (491)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999973
No 128
>PLN00196 alpha-amylase; Provisional
Probab=64.72 E-value=16 Score=39.67 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---cCCCCCe-ee-----eccchhHHHHHHHHHHcCCeEEecC
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGK-LV-----FSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~-~d-----F~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
.+.|.-+|++|+++|-+.=+..- |--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57788899999999998533322 2222322 22 3334699999999999999999974
No 129
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=62.90 E-value=31 Score=38.20 Aligned_cols=148 Identities=19% Similarity=0.375 Sum_probs=83.7
Q ss_pred CCChhhHHHHHHHH---HHcCCCEEEEecc---CCCcCC----CCCee---eeccch-h---HHHHHHHHHHc--CCeEE
Q 011211 20 RILPQHWEDRLLRA---KALGLNTIQTYVP---WNLHEP----KPGKL---VFSGIA-D---LVSFLKLCQKL--DLLVM 80 (491)
Q Consensus 20 R~p~~~W~~~l~k~---ka~G~N~V~~yv~---Wn~hEp----~~G~~---dF~g~~-d---l~~fl~la~~~--gL~Vi 80 (491)
+++++.=++.|+.+ +-+|+|.+|+.|- .+.++- .|+-| +|+=.+ | +--+|+.|++. +|+++
T Consensus 93 ~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~ 172 (496)
T PF02055_consen 93 KLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIF 172 (496)
T ss_dssp TS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEE
T ss_pred hCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEE
Confidence 45544434444443 4589999999875 222221 22322 222111 2 34577877663 57777
Q ss_pred ecCCCccccccCCCCCccccccCCCCe----eEe-cCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC--
Q 011211 81 LRPGPYICAEWDLGGFPAWLLAKKPAL----KLR-SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-- 153 (491)
Q Consensus 81 lrpGPyi~aEw~~GGlP~WL~~~~~~~----~~R-s~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~-- 153 (491)
.-| |. .|.|+..... + .++ ...+.|.++...||.+.++.++++ |=+|-++-+-||...
T Consensus 173 aSp-------WS---pP~WMKtn~~-~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~----GI~i~aiT~QNEP~~~~ 237 (496)
T PF02055_consen 173 ASP-------WS---PPAWMKTNGS-MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE----GIPIWAITPQNEPDNGS 237 (496)
T ss_dssp EEE-------S------GGGBTTSS-SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT----T--ESEEESSSSCCGGG
T ss_pred Eec-------CC---CCHHHccCCc-CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC----CCCeEEEeccCCCCCCC
Confidence 664 43 5999987532 3 233 234678888889998888888765 559999999999863
Q ss_pred -----cCC-------cHHHHH-HHHHHHHHhcCC--ceEEEEecC
Q 011211 154 -----YGD-------DKEYLH-HLVTLARAHLGK--DIILYTTDG 183 (491)
Q Consensus 154 -----~~~-------~~~y~~-~l~~~~~~~~G~--~vpl~t~d~ 183 (491)
|.+ .++|+. +|.-.+++. |. +|-|+..|.
T Consensus 238 ~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~-~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 238 DPNYPWPSMGWTPEEQADFIKNYLGPALRKA-GLGKDVKILIYDH 281 (496)
T ss_dssp STT-SSC--B--HHHHHHHHHHTHHHHHHTS-TT-TTSEEEEEEE
T ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc-CCCCceEEEEEec
Confidence 221 356665 377778776 55 888877764
No 130
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=61.00 E-value=7.2 Score=40.49 Aligned_cols=90 Identities=18% Similarity=0.416 Sum_probs=51.8
Q ss_pred EEEEEeeC------CCCCChhhHHHHHHHHHHc-CCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 10 RIIGGDLH------YFRILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 10 ~~~sG~~H------y~R~p~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+..||. | +.+++.+-|++-+|+-..+ |+|.++-| |.+-++.. ....++|++|+++|-+.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 556777 7 5566777778878887754 88888876 65555544 37899999999999887221
Q ss_pred CCCccccccCC-CCCccccccCCCCeeEecCCHHHHHHHHHHHH
Q 011211 83 PGPYICAEWDL-GGFPAWLLAKKPALKLRSSDRAYLQLVERWWG 125 (491)
Q Consensus 83 pGPyi~aEw~~-GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~ 125 (491)
+-.+ +.+=.|+-. ..++.|.+++++|-+
T Consensus 173 -------~~~N~~am~k~~~~--------~~~~~~~~A~~~y~e 201 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE--------QRNPEFKDACEKYSE 201 (324)
T ss_dssp ----------GGGHHHHHCCC--------CCSHHHHHHHHHHGG
T ss_pred -------cCCChHHHHHhhhh--------ccCHHHHHHHHHhhh
Confidence 1111 111223221 268889888887543
No 131
>PRK09267 flavodoxin FldA; Validated
Probab=59.78 E-value=64 Score=29.67 Aligned_cols=112 Identities=13% Similarity=0.231 Sum_probs=65.1
Q ss_pred CEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 6 Gkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
.-..++++...|....++..|.+-+++++...++-..+.+| .......-.-.|. .-+..+-+++.+.|..++-.
T Consensus 46 ~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~vg~--- 119 (169)
T PRK09267 46 AYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFC--DAMGTLYDIVEPRGATIVGH--- 119 (169)
T ss_pred hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHH--HHHHHHHHHHHHCCCEEECc---
Confidence 34568999999987888899999999888777777777666 2221111001121 24566777788889665433
Q ss_pred ccccccCCCCCcc---ccccCCCCeeEe------cCCHHHH-HHHHHHHHHHHHHh
Q 011211 86 YICAEWDLGGFPA---WLLAKKPALKLR------SSDRAYL-QLVERWWGVLLPKI 131 (491)
Q Consensus 86 yi~aEw~~GGlP~---WL~~~~~~~~~R------s~d~~y~-~~~~~~~~~l~~~l 131 (491)
|..-|.-. ...+. . ... .+++.+. +++++|.++|.+.+
T Consensus 120 -----~~~~gy~~~~~~~~~~-~--~~~g~~~d~~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 120 -----WPTDGYTFEASKAVDD-G--KFVGLALDEDNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred -----cCCCCccccccceeeC-C--EEEEEEecCCCchhhhHHHHHHHHHHHHHHh
Confidence 22222211 11110 0 111 1234454 78899999988764
No 132
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=59.24 E-value=22 Score=37.05 Aligned_cols=73 Identities=8% Similarity=0.011 Sum_probs=53.9
Q ss_pred eCCCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 16 ~Hy~R~---p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
+|..|+ ..+..++.++++++.||.+=.+.+-+.+.. .-+.|+|.-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 344444 366778999999999998766665555443 3455777643 388999999999999999987777764
No 133
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=58.55 E-value=26 Score=36.68 Aligned_cols=72 Identities=10% Similarity=-0.009 Sum_probs=57.7
Q ss_pred eCCCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccch--hHHHHHHHHHHcCCeEEecCCCccc
Q 011211 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 16 ~Hy~R~---p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~gL~VilrpGPyi~ 88 (491)
+|..|+ ..+..++.++++++.+|-+=.+++-|.++.- -+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~-~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDN-YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcC-CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455555 3778899999999999988777777776653 4678776543 8899999999999999998888887
No 134
>PLN02429 triosephosphate isomerase
Probab=58.12 E-value=62 Score=33.77 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHH----HHHcCCeEEecCCCccccccCC------------
Q 011211 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKL----CQKLDLLVMLRPGPYICAEWDL------------ 93 (491)
Q Consensus 30 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~l----a~~~gL~VilrpGPyi~aEw~~------------ 93 (491)
.+++|++|++.|-+- |..++-.|. ..++++.. |.++||.+|+|.|=.. .|-+.
T Consensus 140 a~mLkd~Gv~~ViiG-----HSERR~~f~-----Etd~~V~~Kv~~al~~GL~pIvCIGE~l-~ere~g~t~~vi~~Ql~ 208 (315)
T PLN02429 140 VEQLKDLGCKWVILG-----HSERRHVIG-----EKDEFIGKKAAYALSEGLGVIACIGEKL-EEREAGKTFDVCFAQLK 208 (315)
T ss_pred HHHHHHcCCCEEEeC-----ccccCCCCC-----cCHHHHHHHHHHHHHCcCEEEEEcCCCH-HHHhCCCHHHHHHHHHH
Confidence 568899999988886 655555543 33555555 9999999999988532 00011
Q ss_pred ---CCC-----------ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHh
Q 011211 94 ---GGF-----------PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (491)
Q Consensus 94 ---GGl-----------P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l 131 (491)
-++ |.|..-. + ++.+|...+++.+++++.+...
T Consensus 209 ~~l~~v~~~~~ivIAYEPvWAIGT-G----k~as~e~~~~v~~~IR~~l~~~ 255 (315)
T PLN02429 209 AFADAVPSWDNIVVAYEPVWAIGT-G----KVASPQQAQEVHVAVRGWLKKN 255 (315)
T ss_pred HHHccCCcccceEEEECCHHHhCC-C----CCCCHHHHHHHHHHHHHHHHHH
Confidence 122 5555432 2 4578888898888888776543
No 135
>PTZ00333 triosephosphate isomerase; Provisional
Probab=57.98 E-value=55 Score=33.03 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=64.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC--------------
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-------------- 94 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G-------------- 94 (491)
...++|++|++.|-+- |..++-.|.=+ +..+.+=++.|.++||.+|+|.|=.. .|-+.|
T Consensus 81 S~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvGE~~-~~~~~~~~~~~v~~Ql~~~l 153 (255)
T PTZ00333 81 SAEMLKDLGINWTILG-----HSERRQYFGET-NEIVAQKVKNALENGLKVILCIGETL-EEREAGQTSDVLSKQLEAIV 153 (255)
T ss_pred CHHHHHHcCCCEEEEC-----cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcCCCH-HHHhCCCHHHHHHHHHHHHH
Confidence 3468999999999887 66666555333 45889999999999999999988432 000111
Q ss_pred -C----------C---ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhc
Q 011211 95 -G----------F---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (491)
Q Consensus 95 -G----------l---P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~ 132 (491)
+ + |.|.... + ++.+|.+.+.+.+.+++.+..+-
T Consensus 154 ~~v~~~~~~~iiIAYEPvWAIGt-g----~~a~~e~i~~~~~~IR~~l~~~~ 200 (255)
T PTZ00333 154 KKVSDEAWDNIVIAYEPVWAIGT-G----KVATPEQAQEVHAFIRKWLAEKV 200 (255)
T ss_pred hcCCHHHcceEEEEECCHHHhCC-C----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 1 6666542 3 45689999999998888766543
No 136
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=57.98 E-value=32 Score=39.46 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHcCCCEEEE---------------eccCCCcCCCCCeeeeccchhHHH-HHHHHHHcCCeEEecCCCcc
Q 011211 24 QHWEDRLLRAKALGLNTIQT---------------YVPWNLHEPKPGKLVFSGIADLVS-FLKLCQKLDLLVMLRPGPYI 87 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~---------------yv~Wn~hEp~~G~~dF~g~~dl~~-fl~la~~~gL~VilrpGPyi 87 (491)
+.-...|+.+|++|+|||-. |+|| .|=| |+-|. +++ ...++.+.|++|-.+-.||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cCHHHHHHHHhhCCEEEEecccee
Confidence 45677899999999999954 5567 3333 32221 122 34558899999999988885
Q ss_pred cc---------ccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCcc
Q 011211 88 CA---------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF 151 (491)
Q Consensus 88 ~a---------Ew~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEy 151 (491)
.. +++..+-|.....+ --.| -| .|..++++|++.|.+.|+.+. +|=++|.+-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~r-l~-P~~pe~r~~i~~i~~dla~~~-----~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIHPE---QYRR-LS-PFDDRVRAQVGMLYEDLAGHA-----AFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccCCC---CCcC-CC-CCCHHHHHHHHHHHHHHHHhC-----CCceEEecccc
Confidence 32 11111111111100 0012 12 477889999999999998874 66677776654
No 137
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=57.75 E-value=1.7e+02 Score=29.89 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=38.1
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEE-eccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 19 FRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
.|.+..-=++.-+..++.|+--|.+ ...+..+.-.+ .+..+.+.|+++|+-|++..|+
T Consensus 108 p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~---------~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 108 PRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDP---------RLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred CCchHHHHHHHHHHHHhcCceEEEecccccCCCCCCh---------HHHHHHHHHHHcCCCEEEEeCC
Confidence 3444223334444555688888877 34444443333 4899999999999999998776
No 138
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=56.94 E-value=2.1e+02 Score=29.95 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=48.4
Q ss_pred eeCCCCCChhhHHHHHHHHHHcCCCEEEEecc----CCCcCC------CCCeeeec---cchhHHHHHHHHHHcCCeEEe
Q 011211 15 DLHYFRILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLVFS---GIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 15 ~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~dF~---g~~dl~~fl~la~~~gL~Vil 81 (491)
+=|+ .|.+..++.++.|....+|+.+.++- |.+--+ +.|.|.=+ -..|+..+++.|++.|+.||.
T Consensus 11 aR~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIP 88 (348)
T cd06562 11 SRHF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIP 88 (348)
T ss_pred cccC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEE
Confidence 3355 36899999999999999999999863 655432 12322111 123999999999999999997
Q ss_pred c
Q 011211 82 R 82 (491)
Q Consensus 82 r 82 (491)
.
T Consensus 89 E 89 (348)
T cd06562 89 E 89 (348)
T ss_pred e
Confidence 5
No 139
>PLN02561 triosephosphate isomerase
Probab=56.45 E-value=82 Score=31.81 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=61.6
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC--------------
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-------------- 94 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G-------------- 94 (491)
...++|++|++.|-+- |..++..|.=+ +..+.+=++.|.++||.+|+|.|=.. .|-+.|
T Consensus 80 S~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE~~-~er~~~~~~~~v~~Ql~~~l 152 (253)
T PLN02561 80 SAEMLVNLGIPWVILG-----HSERRALLGES-NEFVGDKVAYALSQGLKVIACVGETL-EQRESGSTMDVVAAQTKAIA 152 (253)
T ss_pred CHHHHHHcCCCEEEEC-----cccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcCCCH-HHHhcCCHHHHHHHHHHHHH
Confidence 4568999999988886 66555555433 45778888899999999999988431 000111
Q ss_pred -C--------C---ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHH
Q 011211 95 -G--------F---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPK 130 (491)
Q Consensus 95 -G--------l---P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~ 130 (491)
+ + |.|..-. + ++.+|...+++.+.++..+..
T Consensus 153 ~~v~~~~~iiIAYEPvWAIGt-G----~~as~~~~~~v~~~Ir~~l~~ 195 (253)
T PLN02561 153 DKVSDWANVVLAYEPVWAIGT-G----KVATPAQAQEVHDELRKWLHK 195 (253)
T ss_pred hccccccceEEEECCHHHhCC-C----CCCCHHHHHHHHHHHHHHHHH
Confidence 1 1 6666542 3 567888889998888876654
No 140
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.05 E-value=17 Score=35.96 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCC-CcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 25 HWEDRLLRAKALGLNTIQTYVPWN-LHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~yv~Wn-~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
.+++.++.++++|..+|.+.-... ..+..+-.+... ...|.++.++|+++|+.+.+.|
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 556678899999999996632111 011111112221 1378999999999999998886
No 141
>PLN02877 alpha-amylase/limit dextrinase
Probab=55.26 E-value=23 Score=42.25 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCCeEEec
Q 011211 64 DLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 64 dl~~fl~la~~~gL~Vilr 82 (491)
++.++++.|+++||.|||-
T Consensus 467 efk~mV~~lH~~GI~VImD 485 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLD 485 (970)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 6999999999999999986
No 142
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=54.44 E-value=15 Score=39.17 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=52.1
Q ss_pred CCCCChhhHHHHHHHHHHc-CCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 18 YFRILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|.-+|.+.|+-+|..+.++ -=|||.+-|- |=+.|-=++|+-. -|.+++++|+++|+-||.-
T Consensus 177 ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 177 YDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 3456889999999999875 7899988654 7788888899888 9999999999999999953
No 143
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=54.26 E-value=22 Score=35.50 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
...++|++|++.|-+- |..++--|.-+ +.++.+=++.|.++||.+|+|.|
T Consensus 76 S~~mL~d~G~~~viiG-----HSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVIIG-----HSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEeC-----cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 3568999999999886 66555555443 55899999999999999999976
No 144
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=54.11 E-value=52 Score=33.11 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCC--CeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKP--GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
.-.|+++|..+|++||+.|++-| -|..+ -.-||+.. ....+.+.+.+.|+.+ |-+|-- +
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~~-er~~l~~ai~etgv~i-----pSmClS----a----- 77 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV----DESDERLARLDWSKE-ERLALVNAIQETGVRI-----PSMCLS----A----- 77 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCHH-HHHHHHHHHHHhCCCc-----cchhhh----h-----
Confidence 45799999999999999999976 34433 24677732 5667788889999532 335521 1
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
++..| +-|.|+.-++.....+.+-+....++
T Consensus 78 HRRfP---fGS~D~~~r~~aleiM~KaI~LA~dL 108 (287)
T COG3623 78 HRRFP---FGSKDEATRQQALEIMEKAIQLAQDL 108 (287)
T ss_pred hccCC---CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23333 67899998888887777766655555
No 145
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=53.87 E-value=6.1 Score=32.79 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCe
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL 78 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~ 78 (491)
...|-.-++.+.. .||.|..|||. +|.+||++|.|--+|
T Consensus 21 ~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpvw 59 (92)
T PF02228_consen 21 THHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPVW 59 (92)
T ss_dssp HHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TTS
T ss_pred HHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCee
Confidence 6789888888765 58999999999 999999999886654
No 146
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=53.26 E-value=25 Score=29.14 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCeEEEcccCc-cCCcC----------CcHHHHHHHHHHHHHh--cCCceEEEEe
Q 011211 139 GGPIVMVQIENE-FGSYG----------DDKEYLHHLVTLARAH--LGKDIILYTT 181 (491)
Q Consensus 139 gGpII~~QiENE-yg~~~----------~~~~y~~~l~~~~~~~--~G~~vpl~t~ 181 (491)
...|.+|+|-|| .+.+. ....|.++|+++++.. +.-+.|+.++
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 358999999999 66322 1345666666665433 2556777443
No 147
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.19 E-value=79 Score=33.21 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEecc----CCCcCC----------------------------CCCeeeeccchh
Q 011211 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP----------------------------KPGKLVFSGIAD 64 (491)
Q Consensus 17 Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------------------~~G~~dF~g~~d 64 (491)
|+ .|.+..++.++.|...++|+.+.++- |.+--+ ..|.|.- .|
T Consensus 13 ~f--~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~d 87 (357)
T cd06563 13 HF--FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EE 87 (357)
T ss_pred cC--cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HH
Confidence 55 36899999999999999999999873 532211 1233433 49
Q ss_pred HHHHHHHHHHcCCeEEec
Q 011211 65 LVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 65 l~~fl~la~~~gL~Vilr 82 (491)
+..+++.|+++|+.||..
T Consensus 88 i~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 88 IREIVAYAAERGITVIPE 105 (357)
T ss_pred HHHHHHHHHHcCCEEEEe
Confidence 999999999999999976
No 148
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.08 E-value=33 Score=37.41 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=46.4
Q ss_pred eCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 16 ~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..|-+.|...-++.++++.++|+..|+++++-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 34667778888899999999999999999887664 26889999999999988766
No 149
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=52.92 E-value=25 Score=34.36 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccc-----cCCCCC---cccc
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE-----WDLGGF---PAWL 100 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aE-----w~~GGl---P~WL 100 (491)
...++|++|++.|-+- |..++ |.-+ |+.+=++.|.++||.+|+|.. .+.-. |..=-+ |.|.
T Consensus 73 S~~mLkd~G~~~viiG-----HSERR--f~Et---di~~Kv~~a~~~gl~~IvCi~-~v~~q~~~~~~~~~vIAYEPvWA 141 (205)
T TIGR00419 73 SAEMLKDIGAKGTLIN-----HSERR--MKLA---DIEKKIARLKELGLTSVVCTN-NVLTTAAAAALEPDVVAVEPPEL 141 (205)
T ss_pred CHHHHHHcCCCEEEEC-----cccCC--CCcc---HHHHHHHHHHHCCCEEEEEEH-HHHHHHHhhhhcCeEEEECCHHH
Confidence 3568999999988886 55444 5445 699999999999999999861 11111 110011 6666
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHH
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWG 125 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~ 125 (491)
.-. + ++.+|...+++.++++
T Consensus 142 IGt-G----~~as~~~~~~v~~~ir 161 (205)
T TIGR00419 142 IGT-G----IPVSPAQPEVVHGSVR 161 (205)
T ss_pred hCC-C----CCCCHHHHHHHHHHHH
Confidence 542 3 4567777778877777
No 150
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=52.54 E-value=1.6e+02 Score=30.83 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=26.1
Q ss_pred ceecCEeeEEEEEeeCCCCCC-hhhHHHHH-HHHHHcCCCEEEE
Q 011211 2 FRKDGEPFRIIGGDLHYFRIL-PQHWEDRL-LRAKALGLNTIQT 43 (491)
Q Consensus 2 f~~dGkp~~~~sG~~Hy~R~p-~~~W~~~l-~k~ka~G~N~V~~ 43 (491)
+.|||||++++=.. .-+| ...+-+.+ +.+|++|+.-+.+
T Consensus 154 ikVdGKPv~~Iy~p---~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 154 IKVDGKPVFLIYRP---GDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred eeECCEEEEEEECc---ccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 47999999988443 3344 44444444 5668999996655
No 151
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=51.84 E-value=25 Score=37.60 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=48.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCcccccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAEW 91 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~aEw 91 (491)
..+...+.++.+|+.|+-+=.+.+-..+.. ..+.|.|+.. -|+.++++.+++.|++|++..-|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 367778999999999998877766644333 4456666543 38999999999999999998888877553
No 152
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.23 E-value=37 Score=35.49 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=51.7
Q ss_pred eCCCCCC---hhhHHHHHHHHHHcCCCEEEEec----------cCCCcCCC---------CCeeeecc---chhHHHHHH
Q 011211 16 LHYFRIL---PQHWEDRLLRAKALGLNTIQTYV----------PWNLHEPK---------PGKLVFSG---IADLVSFLK 70 (491)
Q Consensus 16 ~Hy~R~p---~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~~dF~g---~~dl~~fl~ 70 (491)
+|..|.- .+.-++.++++++.||.+=-+++ .|+...-. =+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 5555653 66778899999999998777655 35543321 12334431 128999999
Q ss_pred HHHHcCCeEEecCCCccc
Q 011211 71 LCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 71 la~~~gL~VilrpGPyi~ 88 (491)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998778775
No 153
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=51.17 E-value=28 Score=37.27 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCEEEE-ecc---CCCcCCCCCee-----eeccchhHHHHHHHHHHcCCeEEec
Q 011211 28 DRLLRAKALGLNTIQT-YVP---WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G~~-----dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+.|.-+|.+|+++|-+ .++ -..|--..-.| .|.+..|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7899999999999976 333 22332211111 6777889999999999999999953
No 154
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=50.97 E-value=50 Score=34.75 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=55.9
Q ss_pred ceecCEeeEEEEEeeCCCCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeecc--chhHHHHHHHHHHcCCe
Q 011211 2 FRKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLL 78 (491)
Q Consensus 2 f~~dGkp~~~~sG~~Hy~R~-p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~gL~ 78 (491)
+.+.|.++++++| +--+ +++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+.|++.||.
T Consensus 87 ~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~ 159 (335)
T PRK08673 87 VEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGLP 159 (335)
T ss_pred EEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCCc
Confidence 3456678888888 3233 37777888889999999999998883 4444477875 45677777889999999
Q ss_pred EEecC
Q 011211 79 VMLRP 83 (491)
Q Consensus 79 Vilrp 83 (491)
++-.|
T Consensus 160 v~tev 164 (335)
T PRK08673 160 IVTEV 164 (335)
T ss_pred EEEee
Confidence 98874
No 155
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=50.72 E-value=42 Score=34.21 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCC--CCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
++..++.++.+++.|.+.|.+|.-+..--+ .++...++ ...+.+++++|+++|+.|.+-
T Consensus 119 ~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 119 VEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEE
Confidence 788999999999999999999975432111 12211222 237899999999999998876
No 156
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=50.61 E-value=69 Score=33.30 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCe
Q 011211 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPAL 107 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~ 107 (491)
..+...++.|.+||=.- .+ - .-.||..+..+.+++.||.+|...|+|.-+.|+ .|+...
T Consensus 52 ~e~~~~~a~Gg~TIVD~--------T~--~--~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~---- 110 (316)
T COG1735 52 AELKRLMARGGQTIVDA--------TN--I--GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALR---- 110 (316)
T ss_pred HHHHHHHHcCCCeEeeC--------Cc--c--ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhC----
Confidence 35666777899988432 11 0 113699999999999999999999999988765 666543
Q ss_pred eEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC-cHHHHHHHHHHHHHhcCCceEEEEecC
Q 011211 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-DKEYLHHLVTLARAHLGKDIILYTTDG 183 (491)
Q Consensus 108 ~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~-~~~y~~~l~~~~~~~~G~~vpl~t~d~ 183 (491)
+ ++.+...+...++.=. .|+=|..=|=-|-|.+.. .+.-.+-|+..++++--..+|+.|=..
T Consensus 111 ---~--------i~~~ae~~v~ei~~Gi---~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 111 ---P--------IEELAEFVVKEIEEGI---AGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred ---C--------HHHHHHHHHHHHHhcc---cCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 2 3334444444444211 133333333345555543 444556666666666445678776543
No 157
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=50.36 E-value=38 Score=35.17 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcC---CCCCee--------eeccchhHHHHHHHHHHcCCeEEecC
Q 011211 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE---PKPGKL--------VFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 17 Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE---p~~G~~--------dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
|--|.+ ..-..+++.+|..|+|++-+-+-=..-| |....+ .|- |+.-||+.|+|+||++|.|.
T Consensus 71 h~v~~k-k~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 71 HSVALK-KRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred hhhcCh-hHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 544444 4567889999999999997754311111 112111 233 99999999999999999993
No 158
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.75 E-value=19 Score=37.86 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=45.7
Q ss_pred eeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 15 DLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 15 ~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+-++ |.|...-.-..+.++++|.++|.+.|+|.-.++.+ -+-....+|.++.+.|+++||-+++-
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 3444 66644433346789999999999999999543310 01122348999999999999998885
No 159
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=49.63 E-value=43 Score=34.47 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=59.1
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCC--eEEecCCCccc-------cccCCCCCccc
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDL--LVMLRPGPYIC-------AEWDLGGFPAW 99 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL--~VilrpGPyi~-------aEw~~GGlP~W 99 (491)
+|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+ .|++..-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 45555578988777743 34555 89999999999994 45555445322 45566688999
Q ss_pred cccCCCCeeEecCC-HHHHHHHHHHHHHHHHHhccc
Q 011211 100 LLAKKPALKLRSSD-RAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 100 L~~~~~~~~~Rs~d-~~y~~~~~~~~~~l~~~l~~~ 134 (491)
+.+.-. +. .+| ...+++--++..+++..|.+.
T Consensus 235 l~~~l~--~~-~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 235 MAKMFD--GL-DDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred HHHHHH--hc-CCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 987532 12 234 446666777777777776654
No 160
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.29 E-value=1.5e+02 Score=30.67 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=46.6
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEec----cCCCcCC---C---CCeee-eccchhHHHHHHHHHHcCCeEEec
Q 011211 21 ILPQHWEDRLLRAKALGLNTIQTYV----PWNLHEP---K---PGKLV-FSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~N~V~~yv----~Wn~hEp---~---~G~~d-F~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.|.+..++.|+.|....+|+.+.++ .|.+--+ + .|.+. |=-..|+..+++.|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEe
Confidence 5689999999999999999999997 4754221 1 22111 111349999999999999999976
No 161
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=48.27 E-value=1.9e+02 Score=29.81 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=115.7
Q ss_pred CCC-hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcc
Q 011211 20 RIL-PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPA 98 (491)
Q Consensus 20 R~p-~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~ 98 (491)
+++ .+..+-+|+.++.-+. .|++|= +.-+-|+.++..|.+.|++|+|..
T Consensus 58 tCKSa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi--------------- 107 (305)
T COG5309 58 TCKSADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI--------------- 107 (305)
T ss_pred CCcCHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------
Confidence 555 7788999999998887 999991 223478899999999999999972
Q ss_pred ccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccC--CcCC---cHHHHHHHHHHHHHhcC
Q 011211 99 WLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG--SYGD---DKEYLHHLVTLARAHLG 173 (491)
Q Consensus 99 WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg--~~~~---~~~y~~~l~~~~~~~~G 173 (491)
|+..+ + .. .+++ .++..+.+.- .--.|..|=|.||-= .... --+|+...|.+++++ |
T Consensus 108 w~tdd---~--~~-------~~~~---til~ay~~~~--~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~a-g 169 (305)
T COG5309 108 WPTDD---I--HD-------AVEK---TILSAYLPYN--GWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEA-G 169 (305)
T ss_pred eeccc---h--hh-------hHHH---HHHHHHhccC--CCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhc-C
Confidence 33332 1 11 1221 2333333321 114688999999963 2221 358999999999976 9
Q ss_pred CceEEEEecCCCcccccCCCccCCeeeeecCCC-----------CCCCCchhHHh--hhhhc-C-CCCCCCcceeecccc
Q 011211 174 KDIILYTTDGGTRETLLKGTIRGDAVFAAVDFS-----------TGAEPWPIFKL--QKQFN-A-PGKSPPLSSEFYTGW 238 (491)
Q Consensus 174 ~~vpl~t~d~~~~~~~~~g~~~~~d~~~t~~f~-----------~~~~~~~~~~~--~~~~~-~-~~~~P~~~~Ef~~GW 238 (491)
.++|+-|.|.| ..+.++ .++....||- +-.+....|-. +++.+ . .+++|.+++| +||
T Consensus 170 y~gpV~T~dsw--~~~~~n----p~l~~~SDfia~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~E--tGW 241 (305)
T COG5309 170 YDGPVTTVDSW--NVVINN----PELCQASDFIAANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTE--TGW 241 (305)
T ss_pred CCCceeecccc--eeeeCC----hHHhhhhhhhhcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEee--ccC
Confidence 99999999998 333332 1122222321 11111122221 12221 1 2347999999 788
Q ss_pred ccc---cCCCCCCCCHHHHHHHHHHHHHh--CCceeeeee
Q 011211 239 LTH---WGEKIAKTDADFTASYLEKILSQ--NGSAVLYMA 273 (491)
Q Consensus 239 fd~---WG~~~~~~~~~~~~~~l~~~l~~--~~s~n~YM~ 273 (491)
=.. .|+..+ +.+.....++++++. .-..++|.|
T Consensus 242 PS~G~~~G~a~p--S~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 242 PSDGRTYGSAVP--SVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred CCCCCccCCcCC--ChhHHHHHHHHHHhhhhccCccEEEe
Confidence 753 343333 344445566777662 234566666
No 162
>PLN02784 alpha-amylase
Probab=48.08 E-value=41 Score=39.63 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCC---CCCe-ee----eccchhHHHHHHHHHHcCCeEEec
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEP---KPGK-LV----FSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~-~d----F~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.++|.-++++|+++|-+.=+.....+ .+.. |+ |....+|..+++.|+++||+||+-
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlD 587 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGD 587 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 56778889999999998543222211 1111 22 233469999999999999999996
No 163
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.87 E-value=1.2e+02 Score=29.97 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=59.2
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCC-CCeeeec----cchhHHHHHHHHHHcCCeEEecCCCccccccCCC
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFS----GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG 94 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~----g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G 94 (491)
.+.++.-+..-+.+++.|+..+.+-. ..|.+. ++.-|=. ....+.+.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~---------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG---------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC----------
Confidence 34566677777888899999876521 112111 1111000 112688999999999999775321
Q ss_pred CCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCc
Q 011211 95 GFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (491)
Q Consensus 95 GlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~ 154 (491)
.+.|. ...++...+.....++.+++..+++ | |-+.+||-.+.+
T Consensus 121 -~~~~~---------~~~~~~~~~~~~~~l~~l~~~A~~~-----G--V~i~iE~~~~~~ 163 (283)
T PRK13209 121 -YDVYY---------EQANNETRRRFIDGLKESVELASRA-----S--VTLAFEIMDTPF 163 (283)
T ss_pred -ccccc---------cccHHHHHHHHHHHHHHHHHHHHHh-----C--CEEEEeecCCcc
Confidence 12221 1112444455556667777777655 2 346788865443
No 164
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=47.41 E-value=35 Score=35.86 Aligned_cols=72 Identities=26% Similarity=0.275 Sum_probs=56.4
Q ss_pred EEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCe-eeeccchhHHHHHHHHHHcCCeEEecCCCccccc
Q 011211 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (491)
Q Consensus 12 ~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aE 90 (491)
+|=|+.+.|.+.+.=..-|++|...||..|-|- +|.|.+.. --|. -+.++++.|+++|++||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFts----l~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFTS----LLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceeee----cccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 556778889998888899999999999887664 56666542 1233 688999999999999999987766543
No 165
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=47.25 E-value=29 Score=34.86 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCC--CcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 27 EDRLLRAKALGLNTIQTYVPWN--LHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
++.+++||++|++.|...+--+ .++.--+..+|+ +..+.++.|++.|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 4568899999999988875511 111111223444 667788999999988654
No 166
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=45.95 E-value=46 Score=38.09 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEE---ecc---CCCcC-C-CCCeeeec---------cchhHHHHHHHHHHcCCeEEecC--
Q 011211 23 PQHWEDRLLRAKALGLNTIQT---YVP---WNLHE-P-KPGKLVFS---------GIADLVSFLKLCQKLDLLVMLRP-- 83 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~---yv~---Wn~hE-p-~~G~~dF~---------g~~dl~~fl~la~~~gL~Vilrp-- 83 (491)
+..|+ -++++|+++|-+ |.. |...- | .-|-||-+ ...|++++++.|+++||+||+-.
T Consensus 77 ~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44554 789999999988 333 43222 2 24556533 24599999999999999999742
Q ss_pred ------CCccccccCCCCCcccc
Q 011211 84 ------GPYICAEWDLGGFPAWL 100 (491)
Q Consensus 84 ------GPyi~aEw~~GGlP~WL 100 (491)
-||.-||+..+-+|.|.
T Consensus 153 nHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 153 AHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCcchHHHhhcCCCCCCce
Confidence 14778888888778776
No 167
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=45.55 E-value=50 Score=34.44 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=46.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc----CCCcCC------CCCeee--------eccchhHHHHHHHHHHcCCeEEec
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLV--------FSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~d--------F~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|.+..++.++.|....+|+.+.++- |.+.-+ ..|.+. |=-..++..+++.|++.|+.||..
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 7899999999999999999999884 654422 122221 111349999999999999999975
No 168
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.54 E-value=32 Score=34.12 Aligned_cols=59 Identities=17% Similarity=0.046 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCC-CeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKP-GKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
+.+++.++.++++|++.|.+.-.-...++.. -.++. -...|.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4567889999999999998631100011111 01111 01368889999999999988875
No 169
>PRK15492 triosephosphate isomerase; Provisional
Probab=45.51 E-value=40 Score=34.16 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
...++|++|++.|-+- |..++-.|.=+ +..+.+=++.|.++||.+|+|.|
T Consensus 86 Sa~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMIG-----HSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEEC-----ccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 4568999999999887 66666655432 44677788899999999999976
No 170
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.37 E-value=56 Score=28.61 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
+|++...+.++.++++|+..|=+. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 578999999999999998877665 22 256899999999999976
No 171
>PRK01060 endonuclease IV; Provisional
Probab=45.31 E-value=1.4e+02 Score=29.53 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHHcCCCE--EEE--eccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCe-EEecCC
Q 011211 22 LPQHWEDRLLRAKALGLNT--IQT--YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPG 84 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~--V~~--yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~-VilrpG 84 (491)
.++.-+..-+++++.|+.. +.. ....|+-.|.|...+.+ ...+.+.|++|++.|.. |++.||
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3444444445666889873 322 22246666666544444 34789999999999997 555655
No 172
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.29 E-value=47 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
|..-.+.+.-+.+.|+|.++++. +.........+-|.-+ +.++.++..++.|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 45567788899999999998885 3333234455655533 4899999999999765
No 173
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=45.24 E-value=15 Score=33.39 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCeEEecCCCcccccc
Q 011211 63 ADLVSFLKLCQKLDLLVMLRPGPYICAEW 91 (491)
Q Consensus 63 ~dl~~fl~la~~~gL~VilrpGPyi~aEw 91 (491)
.||.-||+.|++.|+.|++-.-| +++.|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 39999999999999998887555 55443
No 174
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=44.95 E-value=29 Score=34.21 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCe-eeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
+..++.++.++++|..+|.+...+......+.+ ++ .-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888899999999999875433211111111 11 112367888899999999999986
No 175
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=44.28 E-value=90 Score=35.41 Aligned_cols=111 Identities=12% Similarity=0.018 Sum_probs=76.0
Q ss_pred EeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCc
Q 011211 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (491)
Q Consensus 7 kp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPy 86 (491)
++-+.+++..|+++-+.+.=-++|++-.++|...+-|-.+++. + .+.+|++.|++.++.+|...-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557888888887765544445566666899999999665443 3 78899999988888888877664
Q ss_pred ccc--------ccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc
Q 011211 87 ICA--------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (491)
Q Consensus 87 i~a--------Ew~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~ 133 (491)
... +|..-=+|.|+.+.-- ... +....+++..++..+++..+.+
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~--~~~-d~~~~~~~gv~~a~e~i~~l~~ 579 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR--AVE-DKEEAREEGVAIARELIDAARE 579 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH--hcC-CchHHHHHHHHHHHHHHHHHHh
Confidence 433 2444456999987421 122 2246777777887788877763
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=43.17 E-value=68 Score=32.41 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=42.0
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..|.+.-++++++..+.|+..|+++++.+. + ..+...++.|+++|+.|...
T Consensus 87 ~~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 87 HYPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 345556788999999999999999988765 2 38899999999999988753
No 177
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=41.91 E-value=99 Score=30.98 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC--CeEEecCCCccc-------cccCCCCCcc
Q 011211 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--LLVMLRPGPYIC-------AEWDLGGFPA 98 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g--L~VilrpGPyi~-------aEw~~GGlP~ 98 (491)
++|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.||+..-|-.. ++|-.-.+|.
T Consensus 151 ~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~ 217 (274)
T cd00537 151 KRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPD 217 (274)
T ss_pred HHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCH
Confidence 3444444679999998544 3333 8899999999998 556766555433 2455557799
Q ss_pred ccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc
Q 011211 99 WLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (491)
Q Consensus 99 WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~ 133 (491)
|+.+.-. ....+.....++-.++..+++..+.+
T Consensus 218 ~~~~~l~--~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 218 WLLERLE--KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9987421 11123334556667777777777766
No 178
>PRK10658 putative alpha-glucosidase; Provisional
Probab=41.74 E-value=80 Score=36.28 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=50.2
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccch--hHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~--dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
.+.+...+.++++|+.|+-+=.+++-+.++.. .-+.|.|+-.+ |..++++..++.|++|++..=|||..
T Consensus 280 ~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 35666788899999999976544443333333 23466665332 88999999999999999998888864
No 179
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.50 E-value=3.8e+02 Score=26.82 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE--EecCCCccccccCCCCCccccccCC
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWLLAKK 104 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V--ilrpGPyi~aEw~~GGlP~WL~~~~ 104 (491)
.+.++.++++|+++|++++-.. +--........+..+|.+.++++++.+ +.-=+|| .
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy------------~----- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSP----RWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPY------------L----- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCc----cccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCe------------e-----
Confidence 5689999999999999975421 111111111237788888999999863 2222333 1
Q ss_pred CCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 105 PALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 105 ~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
+.+-+.|+.-++...+.+++.++.-+.+
T Consensus 73 --iNlas~~~~~r~~sv~~~~~~i~~A~~l 100 (274)
T TIGR00587 73 --INLASPDEEKEEKSLDVLDEELKRCELL 100 (274)
T ss_pred --eecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 2244667888888888888877777666
No 180
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=41.13 E-value=1.7e+02 Score=28.52 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=18.1
Q ss_pred CcHHHHHHHHHHHHHhcCCceEE
Q 011211 156 DDKEYLHHLVTLARAHLGKDIIL 178 (491)
Q Consensus 156 ~~~~y~~~l~~~~~~~~G~~vpl 178 (491)
.+.+.++.+++.+++. |+.+.+
T Consensus 190 ~~~~~l~~~~~~~~~~-gl~~~i 211 (213)
T PRK10076 190 PSSADVATMREMAERA-GFQVTV 211 (213)
T ss_pred cCHHHHHHHHHHHHHc-CCeEEe
Confidence 4788999999999987 888643
No 181
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=40.65 E-value=41 Score=38.81 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=39.5
Q ss_pred HHHHHHcCCCEEEE-eccCCCcCCCC---C-eeeec----------------c-----chhHHHHHHHHHHcCCeEEec
Q 011211 30 LLRAKALGLNTIQT-YVPWNLHEPKP---G-KLVFS----------------G-----IADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 30 l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-~~dF~----------------g-----~~dl~~fl~la~~~gL~Vilr 82 (491)
|.-+|++|+++|+. .|+.-..|+.. | .|.|. . .+.+..+++.++++||-|||-
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 88999999999998 67755555433 3 12222 1 247889999999999999986
No 182
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=40.45 E-value=67 Score=33.23 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=19.3
Q ss_pred CCCChhhHHHHHHHHHHcCCCEE
Q 011211 19 FRILPQHWEDRLLRAKALGLNTI 41 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V 41 (491)
=|||.+.|.+.++.+++.|+..|
T Consensus 197 K~Wp~e~fa~l~~~L~~~~~~vv 219 (352)
T PRK10422 197 KCWDNDKFSAVIDALQARGYEVV 219 (352)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEE
Confidence 38899999999999988787654
No 183
>PRK14567 triosephosphate isomerase; Provisional
Probab=40.24 E-value=54 Score=33.14 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 30 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
-.++|++|++.|-+- |..++-.|.=+ +..+.+=++.|.++||.+|+|.|
T Consensus 78 ~~mLkd~G~~yviiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIG-----HSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEEC-----cccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 468899999988886 66555555433 44677888899999999999987
No 184
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=40.16 E-value=46 Score=33.14 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCC-CcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 25 HWEDRLLRAKALGLNTIQTYVPWN-LHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 25 ~W~~~l~k~ka~G~N~V~~yv~Wn-~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
.+++.++.++++|.++|.+.-... ..+..+-.++.. ...|.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRF-REGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHH-HHHHHHHHHHHHHcCCEEEEee
Confidence 467788999999999997631100 000000011110 1367788999999999998883
No 185
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=39.98 E-value=66 Score=31.78 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=49.5
Q ss_pred EeeEEEEEeeCCC---CCChhhHHHHHHHHHHcCCCEEEEecc--CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 7 EPFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 7 kp~~~~sG~~Hy~---R~p~~~W~~~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
+-+.+..++.|.+ +++++..+..-+.+++.|+. |...-+ .|+..|.|....-+ ...+.+.+++|++.|..+|.
T Consensus 25 ~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~-~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 25 RSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKS-IERLIDEIKRCEELGIKALV 102 (273)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEE
Confidence 3455666666655 57788888888889999997 444322 36666555444332 23688999999999998544
No 186
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=39.94 E-value=50 Score=33.94 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=42.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc----CCCcCC------CCC---------eeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPG---------KLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|.+.-++.|+.|...++|+++.++- |.+.-+ ..| .|.- .|+..+++.|++.|+.||..
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 5788899999999999999999875 443221 222 3333 39999999999999999975
No 187
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=39.83 E-value=1e+02 Score=23.72 Aligned_cols=46 Identities=28% Similarity=0.311 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
...++.++.+|+.|++.|.+=- |. ++. ...++.+++++.||.||..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTD----h~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITD----HG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEee----CC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 3467889999999999998741 21 233 4578889999999988753
No 188
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=39.76 E-value=57 Score=30.95 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=53.9
Q ss_pred EeeCCCCC-----ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeecc---chhHHHHHHHHHHcCCeEEecCCC
Q 011211 14 GDLHYFRI-----LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG---IADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 14 G~~Hy~R~-----p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g---~~dl~~fl~la~~~gL~VilrpGP 85 (491)
|.+||+|. +.++.+.-++.++..++..- ..|=..|..++.+.-+. ...+.+|++..+++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 88998854 36778888889888655421 11223343334332111 137889999999999999998877
Q ss_pred ccccc----c---CCCCCcccccc
Q 011211 86 YICAE----W---DLGGFPAWLLA 102 (491)
Q Consensus 86 yi~aE----w---~~GGlP~WL~~ 102 (491)
+-... . .....|.|+..
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~ 156 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAH 156 (196)
T ss_pred chhccccCCCcCCCcCCCceEecC
Confidence 52211 1 13567888876
No 189
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.65 E-value=37 Score=33.25 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
+.+++.++.++++|..+|.+...+.--++ .+-.+. .-...+.++.+.|++.|+.+.+-|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 67888899999999999986432211000 010010 012368888999999999988875
No 190
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=39.22 E-value=5.1e+02 Score=27.74 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHc--CCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE-ecCCCccccccCCCCCccc
Q 011211 23 PQHWEDRLLRAKAL--GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM-LRPGPYICAEWDLGGFPAW 99 (491)
Q Consensus 23 ~~~W~~~l~k~ka~--G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi-lrpGPyi~aEw~~GGlP~W 99 (491)
.+...+++.+++.+ +--.|...++|..- .|+.++.++|+++||.|. +.|+=+ .-|.+
T Consensus 39 ~~e~~~d~~~v~~L~~~~~~v~lH~~~d~~------------~d~~~~~~~l~~~GL~v~~i~p~~f--------~~~~~ 98 (378)
T TIGR02635 39 VFEKIEDAALVHRLTGICPTVALHIPWDRV------------EDYEELARYAEELGLKIGAINPNLF--------QDDDY 98 (378)
T ss_pred HHHHHHHHHHHHhhcCCCCceeeccCCccc------------cCHHHHHHHHHHcCCceeeeeCCcc--------CCccc
Confidence 34555566666655 33466777777221 278899999999999988 565411 11222
Q ss_pred cccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 100 L~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
+.+ .+-+.||..++..-++.++.+..-+.+
T Consensus 99 ---~~G--SLt~pD~~vR~~AIe~~k~~idiA~eL 128 (378)
T TIGR02635 99 ---KFG--SLTHPDKRIRRKAIDHLLECVDIAKKT 128 (378)
T ss_pred ---CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 112 466789999999988888888877754
No 191
>PLN02231 alanine transaminase
Probab=39.15 E-value=1e+02 Score=34.31 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.++.+..++.++..+.-|.++--+++. |-|.|.=-+++=+ .+.+++++|+++|+.||.-
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 455666666666666667666555665 7788887777766 8999999999999998875
No 192
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=38.87 E-value=1.5e+02 Score=26.01 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=47.3
Q ss_pred ecCEeeEEEEEeeCCCCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 4 KDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~R~-p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+.|.-+++.+| +.++- +++.+.+-++.+.+.|+-.+-+.+-= ....-| +.++++|.++++-+|.-
T Consensus 40 l~~gElvlttg--~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~-~~~~iP-----------~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 40 LRGGELVLTTG--YALRDDDEEELREFIRELAEKGAAGLGIKTGR-YLDEIP-----------EEIIELADELGLPLIEI 105 (123)
T ss_pred CCCCeEEEECC--cccCCCCHHHHHHHHHHHHHCCCeEEEEeccC-ccccCC-----------HHHHHHHHHcCCCEEEe
Confidence 34555566666 33344 67789999999999999999886431 111223 88999999999999987
Q ss_pred C
Q 011211 83 P 83 (491)
Q Consensus 83 p 83 (491)
|
T Consensus 106 p 106 (123)
T PF07905_consen 106 P 106 (123)
T ss_pred C
Confidence 5
No 193
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=38.82 E-value=1.1e+02 Score=31.73 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc-CCC-cCCCCC-----eeeeccc--hhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVP-WNL-HEPKPG-----KLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~-Wn~-hEp~~G-----~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
+.+.-++.++++++.||-+=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 7778899999999999988777765 632 232223 2444433 389999999999999999987777764
No 194
>PRK14566 triosephosphate isomerase; Provisional
Probab=38.80 E-value=53 Score=33.34 Aligned_cols=50 Identities=16% Similarity=0.003 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
...++|++|++.|-+- |..++..|.=+ +..+.+=++.|.++||.+|+|.|
T Consensus 87 S~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVIIG-----HSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEEC-----cccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 4568999999999886 66666555432 44677788999999999999976
No 195
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=38.38 E-value=53 Score=32.85 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=33.1
Q ss_pred eecCEeeEEEEEeeCCCCCC-hhhHHHHHHHHHHcCCCEEEE
Q 011211 3 RKDGEPFRIIGGDLHYFRIL-PQHWEDRLLRAKALGLNTIQT 43 (491)
Q Consensus 3 ~~dGkp~~~~sG~~Hy~R~p-~~~W~~~l~k~ka~G~N~V~~ 43 (491)
.+.|+++..+.|.+|+..-. ..+-+--++.||++|+..+=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 47899999999999965444 555578899999999988754
No 196
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=38.27 E-value=86 Score=37.65 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=56.6
Q ss_pred eCCCCCC---hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccc--hhHHHHHHHHHHcCCeEEecCCCccccc
Q 011211 16 LHYFRIL---PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (491)
Q Consensus 16 ~Hy~R~p---~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~gL~VilrpGPyi~aE 90 (491)
+|..|+. .+..++.++++++.+|-+=.+++-|.++.- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 4555553 667788999999999998888877766653 345777643 3899999999999999888777778754
No 197
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=37.84 E-value=3.9e+02 Score=25.94 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec-cchhHHHHHHHHHHcCCeEEecC------CCccccccCCCCCccc
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP------GPYICAEWDLGGFPAW 99 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~gL~Vilrp------GPyi~aEw~~GGlP~W 99 (491)
++.++.|+++|++++.+- +.-.|+ |..-|.+.++..++.|+..+-.- .||.--|.. |..-=
T Consensus 67 ~~~~~~L~~~G~d~~tla----------NNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~--g~kVg 134 (239)
T cd07381 67 PEVADALKAAGFDVVSLA----------NNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVN--GIKVA 134 (239)
T ss_pred HHHHHHHHHhCCCEEEcc----------cccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEEC--CEEEE
Q ss_pred cccCCCCeeEecCCHHH---------HHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHHHH
Q 011211 100 LLAKKPALKLRSSDRAY---------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (491)
Q Consensus 100 L~~~~~~~~~Rs~d~~y---------~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~ 170 (491)
+..-.....-....+.. .+.+.++++++-+. ++. -|++.+...||..+. ..+.+.+++.+.+
T Consensus 135 ~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~------vIv~~H~G~e~~~~p--~~~~~~la~~l~~ 205 (239)
T cd07381 135 FLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADI------VIVSLHWGVEYSYYP--TPEQRELARALID 205 (239)
T ss_pred EEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCE------EEEEecCcccCCCCC--CHHHHHHHHHHHH
Q ss_pred hcCCceEE
Q 011211 171 HLGKDIIL 178 (491)
Q Consensus 171 ~~G~~vpl 178 (491)
. |+|+.+
T Consensus 206 ~-G~D~Ii 212 (239)
T cd07381 206 A-GADLVI 212 (239)
T ss_pred C-CCCEEE
No 198
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.70 E-value=68 Score=36.36 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=45.8
Q ss_pred eCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 16 ~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
+-|.|.|.+.-+..+++++++|+..|+++.+.|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 45677788888999999999999999999877764 3899999999999998643
No 199
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=37.16 E-value=60 Score=32.80 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
...++|++|++.|-+- |..++-.|+=+ +..+.+=++.|.++||.+|||.|
T Consensus 80 S~~mL~d~G~~~viiG-----HSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 80 SAEMLKDLGAKYVLIG-----HSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred CHHHHHHcCCCEEEEC-----ccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 3568999999998886 65554444433 23567888999999999999976
No 200
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.78 E-value=36 Score=33.85 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
+.+++.++.++++|+.+|.+...+....+.+..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 456778899999999987664332211111111110 013677788888889998888753
No 201
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=35.70 E-value=26 Score=35.57 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
.-+.+|+.|-++|.+-|.|..-|++-.+-.- .-|++|...|..+||..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk~---a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQKL---AYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHHH---HHHHHHHHHhhhcCCceeEee
Confidence 3568999999999999999999984333322 378999999999999998885
No 202
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=35.47 E-value=47 Score=33.90 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCCCchhhccC------ccceEEEEEeeCCC-------CCCcceecCCcccEEEEEeCCc
Q 011211 372 ENPLSMESVGQ------MFGFLLYVSEFGGK-------DYGSSLLISKVHDRAQVFISCP 418 (491)
Q Consensus 372 ~~P~~mE~lgQ------~~GyvlY~t~i~~~-------~~~~~L~~~~v~Dra~V~vdg~ 418 (491)
..|.++-+++| -+|.++|+-++... .....|.+..+|-+|.|+|||.
T Consensus 69 pvpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~ 128 (297)
T KOG2024|consen 69 PVPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGV 128 (297)
T ss_pred ccccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcce
Confidence 35555666654 57999999988664 1233578999999999999975
No 203
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=34.92 E-value=44 Score=27.56 Aligned_cols=67 Identities=18% Similarity=0.034 Sum_probs=37.8
Q ss_pred cceEEEEEeeCCCCCCcceecCCcccEEEEEeCCccCCCCCCCceEEEEEeccCcceeecCCCCCCCcEEEEEEEeCCcc
Q 011211 384 FGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRV 463 (491)
Q Consensus 384 ~GyvlY~t~i~~~~~~~~L~~~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~~~~~~~~~~~~~~~~~L~ILVEN~GRv 463 (491)
.|-+++...-......-.|+..+-++..+-||||+ ++|+-... .++.++.. ..+.++|.+ |...||.
T Consensus 18 ~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg~---------~~g~~~~~--~~~~~~~~-~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 18 DGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDGE---------PLGTTQPG--HQLFWQPD-RPGEHTLTV-VDAQGRS 84 (89)
T ss_pred CCCEEEeCCCCCccceEEEEEeCCCCcEEEEECCE---------EcccCCCC--CeEEeCCC-CCeeEEEEE-EcCCCCE
Confidence 45565554311112232345444467899999999 88776433 33444321 146677777 7778874
No 204
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=34.09 E-value=4.5e+02 Score=25.58 Aligned_cols=134 Identities=18% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec------CCCccccccC
Q 011211 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR------PGPYICAEWD 92 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr------pGPyi~aEw~ 92 (491)
|+.|++ .++.|+++|++.+.+- |=| .|||. ..-|.+.++.+++.|+..+-- ..||+--|-
T Consensus 59 f~~~~~----~~~~l~~~G~d~~~la---NNH-----~fD~G-~~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~- 124 (239)
T smart00854 59 FRAPPE----NAAALKAAGFDVVSLA---NNH-----SLDYG-EEGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEV- 124 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEec---cCc-----ccccc-hHHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEE-
Confidence 455554 5779999999998874 123 35664 336788888888888876521 012222221
Q ss_pred CCCC------------ccccccC-CCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHH
Q 011211 93 LGGF------------PAWLLAK-KPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKE 159 (491)
Q Consensus 93 ~GGl------------P~WL~~~-~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~ 159 (491)
+|. |.|.... .+.+ ...++...+.+.++++++-+. ++ =-|+..+...||.... ..
T Consensus 125 -~g~kIg~ig~t~~~~~~~~~~~~~~g~--~~~~~~~~~~i~~~i~~lr~~-~D------~vIv~~H~G~e~~~~p--~~ 192 (239)
T smart00854 125 -KGIKIALLAYTYGTNNGWAASKDRPGV--ALLPDLDREKILADIARARKK-AD------VVIVSLHWGVEYQYEP--TD 192 (239)
T ss_pred -CCEEEEEEEEEcCCCCCcccCCCCCCe--eecCcCCHHHHHHHHHHHhcc-CC------EEEEEecCccccCCCC--CH
Confidence 121 1121110 0100 001111245566655554321 11 1467778888886543 23
Q ss_pred HHHHHHHHHHHhcCCceEEE
Q 011211 160 YLHHLVTLARAHLGKDIILY 179 (491)
Q Consensus 160 y~~~l~~~~~~~~G~~vpl~ 179 (491)
+.+.+++.+.+. |+|+.+-
T Consensus 193 ~~~~~A~~l~~~-G~DvIiG 211 (239)
T smart00854 193 EQRELAHALIDA-GADVVIG 211 (239)
T ss_pred HHHHHHHHHHHc-CCCEEEc
Confidence 455566666555 9998764
No 205
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=34.02 E-value=75 Score=37.11 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=50.4
Q ss_pred eCCCCCC---hhhHHHHHHHHHHcCCC--EEEEeccCCCcCCCCCeeeecc----chhHHHHHHHHHHcCCeEEecCCCc
Q 011211 16 LHYFRIL---PQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFSG----IADLVSFLKLCQKLDLLVMLRPGPY 86 (491)
Q Consensus 16 ~Hy~R~p---~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~dF~g----~~dl~~fl~la~~~gL~VilrpGPy 86 (491)
+|..|+- -+.-+++.+.+++||+. +.-+-+.| .++.=||+- ..++..|++-.++.|+++++-+-|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDy-----Md~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDY-----MDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhh-----hhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 4555653 56778999999999998 44444444 334445542 2368999999999999999988888
Q ss_pred cccc
Q 011211 87 ICAE 90 (491)
Q Consensus 87 i~aE 90 (491)
|..-
T Consensus 375 is~~ 378 (805)
T KOG1065|consen 375 ISTN 378 (805)
T ss_pred cccC
Confidence 8643
No 206
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=34.00 E-value=34 Score=33.07 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred eEEEEEeeC-CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcC--------CCCC----eeeeccchhHHHHHHHHHHc
Q 011211 9 FRIIGGDLH-YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE--------PKPG----KLVFSGIADLVSFLKLCQKL 75 (491)
Q Consensus 9 ~~~~sG~~H-y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE--------p~~G----~~dF~g~~dl~~fl~la~~~ 75 (491)
+.+.-|+-+ .=|||.+.|.+.++++++.| ..+.+.|.-.| -.++ ..++.|..+|..++.+.+..
T Consensus 108 i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 108 IGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp EEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred EEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 334444444 33789999999999999988 56678887766 1222 58888888999999999998
Q ss_pred CCeEEecCCC
Q 011211 76 DLLVMLRPGP 85 (491)
Q Consensus 76 gL~VilrpGP 85 (491)
.+.|-.-.||
T Consensus 185 ~~~I~~Dtg~ 194 (247)
T PF01075_consen 185 DLVIGNDTGP 194 (247)
T ss_dssp SEEEEESSHH
T ss_pred CEEEecCChH
Confidence 9888877766
No 207
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=33.59 E-value=2.6e+02 Score=29.65 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=60.7
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccC----------------
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWD---------------- 92 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~---------------- 92 (491)
...++|++|++.|-+- |..++-.|.=+ +..+.+=++.|.++||.+|+|.|=-.. |-+
T Consensus 87 S~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCiGE~~e-er~~g~~~~v~~~Ql~~~l 159 (355)
T PRK14905 87 SPLMLKELGIELVMIG-----HSERRHVLKET-DQEENEKVLAALKHGFITLLCIGETLE-QKNYNISDEVLRTQLKIGL 159 (355)
T ss_pred CHHHHHHcCCCEEEEC-----cccccCccccc-HHHHHHHHHHHHHCCCEEEEEcCCcHH-HHhccCHHHHHHHHHHHHH
Confidence 4568999999998886 65555444322 346778888999999999999884211 000
Q ss_pred -------CCC--C---ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHH
Q 011211 93 -------LGG--F---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPK 130 (491)
Q Consensus 93 -------~GG--l---P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~ 130 (491)
..- + |.|..-..+ ++.+|.+.+++.++++..+..
T Consensus 160 ~~v~~~~~~~~vIAYEPvWAIGTgg----~~as~~~~~~~~~~Ir~~l~~ 205 (355)
T PRK14905 160 HGVSAEQLPHLFIAYEPVWAIGEGG----IPASAEYADEKHAIIKQCLFE 205 (355)
T ss_pred ccCCHhhcCceEEEECChHHhCCCC----CCCCHHHHHHHHHHHHHHHHH
Confidence 011 1 777764312 457888999999888876543
No 208
>PLN02389 biotin synthase
Probab=33.42 E-value=57 Score=34.79 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCEEEEecc--CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 27 EDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
++.++++|++|++.+..-+- -+.+...-..-+|+ +.-+.++.|++.|+.|.
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 56788889999998776321 21121111112444 66788999999998763
No 209
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=33.32 E-value=1.5e+02 Score=32.09 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=47.6
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|.+..+..++.++.+++-|.++=-+++. |-|.|.=-.|+=+ .+.+++++|+++++.+|.-
T Consensus 180 f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 180 FQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 4566788888888888888886555654 6788876666655 8999999999999999975
No 210
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=33.29 E-value=91 Score=32.81 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=37.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCe
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL 78 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~ 78 (491)
..-.|+..-.-.+++||.+|.+|-+|+.-+..= |++.||.-.+..--+
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEG 178 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCC
Confidence 456799999999999999999999999766432 677787777665444
No 211
>PRK04302 triosephosphate isomerase; Provisional
Probab=33.21 E-value=85 Score=30.55 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=42.3
Q ss_pred eCCCCCChhhH--HHHHHHHHHcCCCEEEEeccCCCc-CCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCC
Q 011211 16 LHYFRILPQHW--EDRLLRAKALGLNTIQTYVPWNLH-EPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (491)
Q Consensus 16 ~Hy~R~p~~~W--~~~l~k~ka~G~N~V~~yv~Wn~h-Ep~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGP 85 (491)
.|+...+..-. +.-++++|++|++.|-+- | |.+ -.|. .+.++++.|+++||.+|++.|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii~-----~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLIN-----HSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEEe-----ccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57665543322 234889999999999876 4 322 2344 6899999999999999998665
No 212
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=33.20 E-value=3.3e+02 Score=28.78 Aligned_cols=214 Identities=21% Similarity=0.268 Sum_probs=98.8
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEec------------------------------cCCCcCCCCCeeeeccc--------
Q 011211 21 ILPQHWEDRLLRAKALGLNTIQTYV------------------------------PWNLHEPKPGKLVFSGI-------- 62 (491)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~N~V~~yv------------------------------~Wn~hEp~~G~~dF~g~-------- 62 (491)
+.=+.|++.|.-|.-.|+|.+-..+ +|+...--.| |.|.
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~g---wgGPLp~~w~~~ 92 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQG---WGGPLPQSWIDQ 92 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--S---TT----TTHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCccc---CCCCCCHHHHHH
Confidence 4567899999999999999986554 3554443333 4442
Q ss_pred -hhH-HHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCee---------------EecCCHHHHHHHHHHHH
Q 011211 63 -ADL-VSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALK---------------LRSSDRAYLQLVERWWG 125 (491)
Q Consensus 63 -~dl-~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~---------------~Rs~d~~y~~~~~~~~~ 125 (491)
..| .++|+-.++.||..||- | -.|-.|.=+.++.|+.+ |...||.|.+-.+.|++
T Consensus 93 q~~Lq~kIl~RmreLGm~PVLP-a-------F~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~ 164 (333)
T PF05089_consen 93 QAELQKKILDRMRELGMTPVLP-A-------FAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYE 164 (333)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEE----------S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCC-C-------cCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHH
Confidence 122 45677788899998875 1 12334666666555432 34578999998888888
Q ss_pred HHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHH----HHhcCCceE------EEEecC-CCc---ccccC
Q 011211 126 VLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLA----RAHLGKDII------LYTTDG-GTR---ETLLK 191 (491)
Q Consensus 126 ~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~----~~~~G~~vp------l~t~d~-~~~---~~~~~ 191 (491)
+..+..-. -.+-.+..=||-+.-+.+.+|+..+.+.+ ++. .-+.. +|..|. |.. ..+-.
T Consensus 165 ~q~~~yG~------~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~-dp~AvWvmQgWlF~~~~fW~~~~~~a~L~ 237 (333)
T PF05089_consen 165 EQIKLYGT------DHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAA-DPDAVWVMQGWLFYYDPFWTPNPIKALLS 237 (333)
T ss_dssp HHHHHH---------SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH--TT-EEEEEE--------BTTBS-HHHHT
T ss_pred HHHHhcCC------CceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhh-CCCcEEEEcccccccccccCcchHHHHHc
Confidence 88777752 25667788899887666666776666554 333 22221 222232 211 11222
Q ss_pred CCccCCeeeeecCCCCCCCCchhHHhhhhhcCCCCCCCcceeeccccccccCCCCCC-CCHHHHHHHHHHHHHh
Q 011211 192 GTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLTHWGEKIAK-TDADFTASYLEKILSQ 264 (491)
Q Consensus 192 g~~~~~d~~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~Ef~~GWfd~WG~~~~~-~~~~~~~~~l~~~l~~ 264 (491)
| +|.+.++- +|..+. ..+.++..+.|. .+|.+++. +...|++... ...+.++....+.+..
T Consensus 238 ~-Vp~~~mli-LDL~se--~~p~w~~~~~f~---G~pwIwc~-----L~NFGG~~gl~G~~~~i~~~~~~a~~~ 299 (333)
T PF05089_consen 238 G-VPKGRMLI-LDLFSE--RFPQWKRTESFY---GKPWIWCM-----LHNFGGNTGLYGNLENIASGPIEARAS 299 (333)
T ss_dssp T--SGGGEEE-EETTTT--TS---HHHHCTT------EEEEE--------STT--SS---HHHHHHHHHHHHHT
T ss_pred C-CCCCCeEE-EEcccc--ccchhccccccc---cchhhhhc-----ccCCCCCCCCcccHHHHHhhHHHHHHh
Confidence 2 33222322 344432 222344344442 35887766 5677776543 3577778777776664
No 213
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=33.17 E-value=4.9e+02 Score=25.68 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=86.7
Q ss_pred eeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEecc-CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCc
Q 011211 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP-WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (491)
Q Consensus 8 p~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPy 86 (491)
.+.+++|+....|.....=+...+.+.+.|+.+..+-+. ..+..+ +. ...-.+.++.+..++.+-.||+.|.
T Consensus 28 kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~--d~---~~~p~v~~l~~~v~~ADgvii~TPE-- 100 (219)
T TIGR02690 28 RILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDA--AH---ADHPKVRELRQLSEWSEGQVWCSPE-- 100 (219)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCc--Cc---ccCHHHHHHHHHHHhCCEEEEeCCc--
Confidence 468899999999988877777777888778876555442 222221 11 1122678888888889999999873
Q ss_pred cccccCCCCCcc-------ccccC---------CCCeeEecCCHHHH-HHHHHHHHHHHHHhccccccCCCCeEEEcccC
Q 011211 87 ICAEWDLGGFPA-------WLLAK---------KPALKLRSSDRAYL-QLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (491)
Q Consensus 87 i~aEw~~GGlP~-------WL~~~---------~~~~~~Rs~d~~y~-~~~~~~~~~l~~~l~~~~~~~gGpII~~QiEN 149 (491)
. +|++|. |+.+. +| +-+-+...... .....=++.++..+.-+.... .|.+.+..+
T Consensus 101 ----Y-n~sipg~LKNaiDwls~~~~~~~~~~~Kp-vaivgaSgg~~g~ra~~~LR~vl~~l~a~v~p~--~v~i~~a~~ 172 (219)
T TIGR02690 101 ----R-HGAITGSQKDQIDWIPLSVGPVRPTQGKT-LAVMQVSGGSQSFNAVNILRRLGRWMRMPTIPN--QSSVAKAFD 172 (219)
T ss_pred ----c-ccCcCHHHHHHHHhcccCcccccccCCCc-EEEEEeCCcHhHHHHHHHHHHHHHHCCCccccc--hhhhhhhHh
Confidence 3 366665 66542 23 33333333322 122223444444444333322 455566677
Q ss_pred ccCCcC--CcHHHHHHHHHHHHH
Q 011211 150 EFGSYG--DDKEYLHHLVTLARA 170 (491)
Q Consensus 150 Eyg~~~--~~~~y~~~l~~~~~~ 170 (491)
+++.-| .|.+..+.+.+++.+
T Consensus 173 ~fd~~G~l~d~~~~~~l~~~l~~ 195 (219)
T TIGR02690 173 EFDEAGRMKPSDYYDRVVDVMEE 195 (219)
T ss_pred hcCcCCCCCCHHHHHHHHHHHHH
Confidence 776544 366667777666554
No 214
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.82 E-value=1.1e+02 Score=31.31 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeecc---chhHHHHHHHHHHcCCeEEec
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG---IADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g---~~dl~~fl~la~~~gL~Vilr 82 (491)
.-+..++-+..+.++|+.-|-+-.-|...+ ....+||+. ..||.++++-|++.|+.|+|.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 467788899999999999999988898722 244677763 459999999999999998887
No 215
>PLN02540 methylenetetrahydrofolate reductase
Probab=32.71 E-value=91 Score=35.17 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=62.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC--CeEEecCCCccc-------cccCCCCCccc
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--LLVMLRPGPYIC-------AEWDLGGFPAW 99 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g--L~VilrpGPyi~-------aEw~~GGlP~W 99 (491)
+|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.||...-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444789999988533 5555 7889999999998 667776666443 34665567999
Q ss_pred cccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 100 L~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
+.+.-. ....++...++.-.++...++.+|.+.
T Consensus 228 i~~rLe--~~kddde~v~~~Gieia~e~~~~L~~~ 260 (565)
T PLN02540 228 ITAALE--PIKDNDEAVKAYGIHLGTEMCKKILAH 260 (565)
T ss_pred HHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 987532 234555666777777777788777653
No 216
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.67 E-value=82 Score=31.18 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=38.3
Q ss_pred EEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEe-ccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 12 ~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
+.+-+.++...++.| +++++++|.+.|.+. .+. |. ++ ++.++++.|+++||.+++-.-
T Consensus 79 lM~y~n~~~~~~~~~---i~~~~~~Gadgvii~dlp~---e~------~~---~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 79 LMTYLEDYVDSLDNF---LNMARDVGADGVLFPDLLI---DY------PD---DLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred EEEecchhhhCHHHH---HHHHHHcCCCEEEECCCCC---Cc------HH---HHHHHHHHHHHcCCCEEEEEC
Confidence 334444444445544 677889999999984 111 11 11 678999999999999887643
No 217
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.52 E-value=69 Score=32.30 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.++++.+.+.|+..|++.+..+ +++ .+.+.++.|+++|+.|.+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEE
Confidence 3467778889999999987654 344 7889999999999987765
No 218
>PRK09248 putative hydrolase; Validated
Probab=32.49 E-value=1.2e+02 Score=29.75 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=38.6
Q ss_pred eEEEEEeeCCCCCCh----hhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 9 FRIIGGDLHYFRILP----QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 9 ~~~~sG~~Hy~R~p~----~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
+=++-|++|....++ ++-+..++.+++.+++++.-.-.. .++. +..+.++.|++.|+-+=+.-+
T Consensus 94 ~D~vi~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~--------~~~~----~~~~~~~~~~~~g~~lEvN~~ 161 (246)
T PRK09248 94 LDIVIAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNP--------KYPI----DIEAVVKAAKEHNVALEINNS 161 (246)
T ss_pred CCEEEEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCC--------CCcc----cHHHHHHHHHHhCCEEEEECC
Confidence 445668889664443 344555666755566666544211 1222 467788899999987666544
Q ss_pred C
Q 011211 85 P 85 (491)
Q Consensus 85 P 85 (491)
+
T Consensus 162 ~ 162 (246)
T PRK09248 162 S 162 (246)
T ss_pred C
Confidence 3
No 219
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=31.85 E-value=1.9e+02 Score=28.19 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec-cchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccc
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL 100 (491)
.+..++..++.++++|+.++-+|..... ....|..+ |..|=...+++|+++|+. + |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 4788999999999999999999977655 22223333 667899999999999942 2 445555
Q ss_pred ccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011211 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYT 180 (491)
Q Consensus 101 ~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~~~G~~vpl~t 180 (491)
.-+.. ..+..+...+..||+.+...|...-+ ++ |-|+.-. =..++.+.. .|....+|.
T Consensus 112 avD~d-----~~~~~~~~~v~~Y~~a~~~~l~~~gY---------~~----GiYg~~~-~~~~~~~~~---~g~~~~~w~ 169 (212)
T cd06418 112 AVDFD-----ALDDEVTEVILPYFRGWNDALHEAGY---------RI----GIYGSRN-VCSRVLAAA---AGLAVVSFV 169 (212)
T ss_pred EeecC-----CCcchhHHHHHHHHHHHHHHHHhcCC---------ce----eEEcChH-HHHHHHHhc---cCCceeEEE
Confidence 44322 12233777888899988888875422 22 5566422 233333332 366778888
Q ss_pred ecCC
Q 011211 181 TDGG 184 (491)
Q Consensus 181 ~d~~ 184 (491)
+|-.
T Consensus 170 a~~s 173 (212)
T cd06418 170 ADMS 173 (212)
T ss_pred ecCC
Confidence 8854
No 220
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=31.32 E-value=7.1e+02 Score=27.05 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCEEEEecc----CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE--EecCCCccccccCCCCCccc
Q 011211 26 WEDRLLRAKALGLNTIQTYVP----WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAW 99 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V--ilrpGPyi~aEw~~GGlP~W 99 (491)
....++.+.+.|+|++++|+- |..-...+ .++.+|.+.|+++||.+ ++-=+||.
T Consensus 143 ~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------ 202 (413)
T PTZ00372 143 VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------ 202 (413)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce------------
Confidence 334778899999999999964 65444333 38999999999998752 33334441
Q ss_pred cccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcc
Q 011211 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (491)
Q Consensus 100 L~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~Qi 147 (491)
+.+-+.|+.-++...+.+.+-+.+.+.+ |-+.+-+.-
T Consensus 203 -------INLASpd~e~rekSv~~~~~eL~rA~~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 -------INLANPDKEKREKSYDAFLDDLQRCEQL----GIKLYNFHP 239 (413)
T ss_pred -------ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECC
Confidence 2244567777777777777777776655 335555554
No 221
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=30.84 E-value=98 Score=31.74 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCc--C-----------CCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH--E-----------PKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~h--E-----------p~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
+=|||.+.|.+.++.+.+-|+..|=+ +.-. | +.+...|+.|..+|..++.+.+...+.|---.|
T Consensus 194 ~K~Wp~e~~~~l~~~l~~~~~~ivl~---g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG 270 (344)
T TIGR02201 194 FKCWDNDRFSALIDALHARGYEVVLT---SGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV 270 (344)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEe---cCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH
Confidence 44889999999999998778765544 3311 1 123457777777777777777776666665555
Q ss_pred C
Q 011211 85 P 85 (491)
Q Consensus 85 P 85 (491)
|
T Consensus 271 p 271 (344)
T TIGR02201 271 P 271 (344)
T ss_pred H
Confidence 5
No 222
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=30.47 E-value=2.2e+02 Score=29.86 Aligned_cols=87 Identities=15% Similarity=0.290 Sum_probs=57.8
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEecc-CCC--------cCC-CCCeeeeccchhHHHHHHHHHHcCCeEEecCCCc
Q 011211 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVP-WNL--------HEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (491)
Q Consensus 17 Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~-Wn~--------hEp-~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPy 86 (491)
|..++|+..|-+ .++.-|+-++-+.++ |.- .+- ++++|-+ .++++++|+.+|..
T Consensus 42 ~~~~iPp~~~id---aAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~-----a~kLv~lak~yGfD-------- 105 (339)
T cd06547 42 SAVTIPPADWIN---AAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPV-----ADKLVEVAKYYGFD-------- 105 (339)
T ss_pred ccccCCCcHHHH---HHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHH-----HHHHHHHHHHhCCC--------
Confidence 455788888866 788899999988754 751 112 4444443 48899999988854
Q ss_pred cccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 87 ICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 87 i~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
-|+.+.+- ...++.-++.+..|+++|-+++++.
T Consensus 106 -----------Gw~iN~E~----~~~~~~~~~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 106 -----------GWLINIET----ELGDAEKAKRLIAFLRYLKAKLHEN 138 (339)
T ss_pred -----------ceEeeeec----cCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 35555322 1115566777888888888887764
No 223
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=30.41 E-value=1.3e+02 Score=28.87 Aligned_cols=156 Identities=18% Similarity=0.117 Sum_probs=77.0
Q ss_pred EEEEEeeCCCCCChhhHHHHHHHHH-HcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC-Ccc
Q 011211 10 RIIGGDLHYFRILPQHWEDRLLRAK-ALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG-PYI 87 (491)
Q Consensus 10 ~~~sG~~Hy~R~p~~~W~~~l~k~k-a~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG-Pyi 87 (491)
++..+.+.+.. .+.+.+.|++.. +.|+-.|..+-.. +.++.......+.++++|+|+|+-|++-+| +..
T Consensus 72 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~ 142 (273)
T PF04909_consen 72 FIGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGF 142 (273)
T ss_dssp EEEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHH
T ss_pred EEEEEEecCCC--chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeeccccch
Confidence 34445555533 556666666655 9999999987432 222333222236999999999999999976 100
Q ss_pred ccccCCCCCc---cccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccC-CcC-CcHHHHH
Q 011211 88 CAEWDLGGFP---AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG-SYG-DDKEYLH 162 (491)
Q Consensus 88 ~aEw~~GGlP---~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg-~~~-~~~~y~~ 162 (491)
..+-..-..| .-+..+.|++++-...-.+. ..|+..++..++.+. +| .+.+--=++ .+. .......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~P~l~ii~~H~G~~---~~~~~~~~~l~~~~~-----nv-y~d~s~~~~~~~~~~~~~~~~ 213 (273)
T PF04909_consen 143 PDAPSDPADPEELEELLERFPDLRIILAHLGGP---FPWWEEALRLLDRFP-----NV-YVDLSGIPPFWYFWPPSFDRP 213 (273)
T ss_dssp HHHHHHHHHHHHHTTHHHHSTTSEEEESGGGTT---HHHHHHHHHHHHHHT-----TE-EEECHSHHSSEEEETTHHCHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCeEEEecCccc---chhHHHHHHHHHhCC-----cc-cccccccccccccCcccccHH
Confidence 0000000001 12345567666654433322 344444455444331 11 122211000 011 1112234
Q ss_pred HHHHHHHHhcCCceEEEEecCC
Q 011211 163 HLVTLARAHLGKDIILYTTDGG 184 (491)
Q Consensus 163 ~l~~~~~~~~G~~vpl~t~d~~ 184 (491)
.+..+++.. |.+=.+|-||-+
T Consensus 214 ~l~~~~~~~-g~drilfGSD~P 234 (273)
T PF04909_consen 214 FLRRAVDEF-GPDRILFGSDYP 234 (273)
T ss_dssp HHHHHHHHH-TGGGEEEE--TT
T ss_pred HHHHHHHHh-CCceEEecCCCC
Confidence 555555554 888889999976
No 224
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=30.35 E-value=58 Score=26.01 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.1
Q ss_pred CCcccEEEEEeCCccCCCCCCCceEEEEEecc
Q 011211 405 SKVHDRAQVFISCPTEDNSGRPTYVGTIERWS 436 (491)
Q Consensus 405 ~~v~Dra~V~vdg~~~~~~~~~~~~g~l~r~~ 436 (491)
++..|-|-||++++ ++|++.++.
T Consensus 24 pk~~dsaEV~~g~E---------fiGvi~~De 46 (63)
T PF11324_consen 24 PKKDDSAEVYIGDE---------FIGVIYRDE 46 (63)
T ss_pred CCCCCceEEEeCCE---------EEEEEEeec
Confidence 45689999999999 999999854
No 225
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=30.26 E-value=1.1e+02 Score=34.75 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=45.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|-..|.+.-+..++++++.|+.+++++-+.|..+ ++...++.+++.|+.+...
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~------------n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALNDAR------------NLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCcchH------------HHHHHHHHHHHcCCEEEEE
Confidence 5566788889999999999999999998877654 8999999999999987765
No 226
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.98 E-value=1.2e+02 Score=33.02 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=57.7
Q ss_pred ecCEeeEEEEEeeCCCCCC---hhhHHHHHHHHHHcCCCE--E--EEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC
Q 011211 4 KDGEPFRIIGGDLHYFRIL---PQHWEDRLLRAKALGLNT--I--QTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~R~p---~~~W~~~l~k~ka~G~N~--V--~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g 76 (491)
+.+.-|+|+.+.=+-++.+ ++.-+.--+.+++.|++. | .....-|+-.|.+..+.++ ..-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Confidence 5567889998887766554 445555567788888752 3 3322278888888888776 337888899999999
Q ss_pred Ce-EEecCC
Q 011211 77 LL-VMLRPG 84 (491)
Q Consensus 77 L~-VilrpG 84 (491)
.. |++-||
T Consensus 232 a~~VV~HPG 240 (413)
T PTZ00372 232 IKLYNFHPG 240 (413)
T ss_pred CCEEEECCC
Confidence 98 666787
No 227
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.76 E-value=1.3e+02 Score=30.47 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=45.5
Q ss_pred eEEEEEeeC-CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCc-C---------CCCCeeeeccchhHHHHHHHHHHcCC
Q 011211 9 FRIIGGDLH-YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-E---------PKPGKLVFSGIADLVSFLKLCQKLDL 77 (491)
Q Consensus 9 ~~~~sG~~H-y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-E---------p~~G~~dF~g~~dl~~fl~la~~~gL 77 (491)
+.+.-|.-+ .=|||.+.|.+.++.+...|+..|=+ +.-- | ..++. ++.|..+|..++.+.+...+
T Consensus 182 i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 182 AVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred EEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcCCE
Confidence 334444434 44889999999999997778776633 2211 1 11222 66676677777777777776
Q ss_pred eEEecCCC
Q 011211 78 LVMLRPGP 85 (491)
Q Consensus 78 ~VilrpGP 85 (491)
.|---.||
T Consensus 258 ~I~~DSgp 265 (319)
T TIGR02193 258 VVGVDTGL 265 (319)
T ss_pred EEeCCChH
Confidence 66655555
No 228
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=29.67 E-value=36 Score=35.27 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=38.5
Q ss_pred eeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 8 p~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
..++++=+-.--++ ++.|++.+..+-++|+|.|+-. |+.-. |...|.++|+++|.+++
T Consensus 34 ~~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsGL-----H~~L~---------ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 34 DTLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSGL-----HDFLS---------DDPELAAAAKKNGVRII 91 (301)
T ss_dssp SEEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE-S-----SS-HC---------CHHHHHCCHHCCT--EE
T ss_pred CEEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEecC-----hhhhc---------cCHHHHHHHHHcCCeEe
Confidence 34555544444444 4899999999999999999964 66433 77899999999998755
No 229
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.63 E-value=1.2e+02 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=38.4
Q ss_pred EeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 14 G~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..+|-. .+..| .+++++++|.+.|.+..... ...+.++++.|+++|+.+++-
T Consensus 57 ~d~k~~--d~~~~--~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 57 ADLKTM--DAGEY--EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEeec--cchHH--HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 355543 33333 67889999999999875431 136899999999999998875
No 230
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.19 E-value=21 Score=34.33 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=43.8
Q ss_pred eEEEEEeeCCCCCC---hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCC--eeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 9 FRIIGGDLHYFRIL---PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 9 ~~~~sG~~Hy~R~p---~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..+-+|--.|.|+. |-.-+ +-+.++|++.+-.- .--+.| -|||-...+|..|.++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 34455655666663 22222 34567888765443 112344 589987889999999999999998775
No 231
>PRK06703 flavodoxin; Provisional
Probab=29.15 E-value=3.4e+02 Score=24.25 Aligned_cols=98 Identities=12% Similarity=-0.063 Sum_probs=56.5
Q ss_pred EeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec---cchhHHHHHHHHHHcCCeEEecC
Q 011211 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS---GIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 7 kp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~gL~Vilrp 83 (491)
-..++++...+-.-.+|..+.+-+..+++.-++.....+|- .++++ .....+.+-+..++.|..++.+|
T Consensus 49 ~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg--------~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 49 YDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG--------SGDTAYPLFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred CCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc--------cCCCChHHHHHHHHHHHHHHHHCCCEEcccC
Confidence 34566655444344456667777777776656655555552 11211 12345566777788998877662
Q ss_pred CCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhcc
Q 011211 84 GPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (491)
Q Consensus 84 GPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~ 133 (491)
+- ++...++..-++.++.|-++|++.++.
T Consensus 121 ---~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~ 149 (151)
T PRK06703 121 ---LK------------------IELAPETDEDVEKCSNFAIAFAEKFAQ 149 (151)
T ss_pred ---eE------------------EecCCCchhHHHHHHHHHHHHHHHHHh
Confidence 10 111112346778888888888876653
No 232
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=29.11 E-value=48 Score=34.50 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCc------CCCCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLH------EPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~h------Ep~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
++.|++||++|++.+.. .-.... .-.|+...+. +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67789999999998741 001111 1123333333 5578999999999864
No 233
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=28.84 E-value=73 Score=30.99 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=46.1
Q ss_pred EeeCCC-CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 14 GDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 14 G~~Hy~-R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+...+| +.+.+.....++.+.++|.+.|.+.+.+.... ...- ..++.++.++|++.|+.+|+.
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~---~~~i~~v~~~~~~~g~~~iie 128 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE---EREM---LEELARVAAEAHKYGLPLIAW 128 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch---HHHH---HHHHHHHHHHHHHcCCCEEEE
Confidence 344454 77778888889999999999997766654221 1111 238899999999999999985
No 234
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.73 E-value=1.9e+02 Score=22.12 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecc-CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEE
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVP-WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vi 80 (491)
+..-.+.++.+.+.|+|..+++.. ....+...-.+.+++ .+.+.+++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 345667888899999999999853 111111112345554 466799999999997654
No 235
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=28.68 E-value=1.3e+02 Score=32.64 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=44.9
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..+.+..++.++..++.|.++=-+++. |-|.|.=-.|+=+ .+.+++++|++++++||.-
T Consensus 172 ~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 172 QITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLISD 230 (468)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEEE
Confidence 444566666666666667766556777 7888887777666 8999999999999999875
No 236
>PRK07094 biotin synthase; Provisional
Probab=28.63 E-value=48 Score=33.96 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCEEEEecc---CCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 27 EDRLLRAKALGLNTIQTYVP---WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
++.+++||++|++.|.+-+- -..++.--...+++ +..+.++.|++.|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 34567777777777765421 11111111123444 6777788888888754
No 237
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.50 E-value=88 Score=30.98 Aligned_cols=73 Identities=22% Similarity=0.181 Sum_probs=51.6
Q ss_pred EEEeeCC-CCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCC-----------CCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 12 IGGDLHY-FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-----------KPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 12 ~sG~~Hy-~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----------~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
..|+-+. =+||.+.|.+.++.+++.|++.|-+. +-.|. .+...++.|..+|..++.+.++..+.|
T Consensus 127 ~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I 203 (279)
T cd03789 127 PPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVV 203 (279)
T ss_pred CCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEE
Confidence 3344333 36789999999999998888777443 22221 244567888878899999998888888
Q ss_pred EecCCCcc
Q 011211 80 MLRPGPYI 87 (491)
Q Consensus 80 ilrpGPyi 87 (491)
-...||.-
T Consensus 204 ~~Dsg~~H 211 (279)
T cd03789 204 TNDSGPMH 211 (279)
T ss_pred eeCCHHHH
Confidence 88777643
No 238
>PRK00870 haloalkane dehalogenase; Provisional
Probab=28.43 E-value=1.1e+02 Score=30.45 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred CEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCc-CCCC--CeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EPKP--GKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 6 Gkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep~~--G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|++++++-| +-.....|...++.+.+.|+++|..-.+.--. .+.+ ..|+|+. ..+.+.++.++.++.
T Consensus 46 ~~~lvliHG----~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~--~a~~l~~~l~~l~~~---- 115 (302)
T PRK00870 46 GPPVLLLHG----EPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYAR--HVEWMRSWFEQLDLT---- 115 (302)
T ss_pred CCEEEEECC----CCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHH--HHHHHHHHHHHcCCC----
Confidence 456666655 33456789999988888899999887664322 2222 2355552 333344445566653
Q ss_pred CCCccccccCCCCCccc
Q 011211 83 PGPYICAEWDLGGFPAW 99 (491)
Q Consensus 83 pGPyi~aEw~~GGlP~W 99 (491)
|.+..-++.||.-+.
T Consensus 116 --~v~lvGhS~Gg~ia~ 130 (302)
T PRK00870 116 --DVTLVCQDWGGLIGL 130 (302)
T ss_pred --CEEEEEEChHHHHHH
Confidence 222223788887544
No 239
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=28.37 E-value=73 Score=32.47 Aligned_cols=61 Identities=16% Similarity=0.328 Sum_probs=45.2
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.+..+.+.+++.+++.++-+..+.-+++. |-|.|.=..++-+ ++.+++++|+++++++|+-
T Consensus 127 ~~~~d~~~l~~~l~~~~~~~~~~~~v~~~-~p~nPtG~~~~~~---~l~~l~~~~~~~~~~ii~D 187 (363)
T PF00155_consen 127 DFHLDPEALEEALDELPSKGPRPKAVLIC-NPNNPTGSVLSLE---ELRELAELAREYNIIIIVD 187 (363)
T ss_dssp TTEETHHHHHHHHHTSHTTTETEEEEEEE-SSBTTTTBB--HH---HHHHHHHHHHHTTSEEEEE
T ss_pred cccccccccccccccccccccccceeeec-ccccccccccccc---cccchhhhhcccccceeee
Confidence 34566888888888887777655555554 6677776677666 8999999999999999975
No 240
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=28.17 E-value=64 Score=34.14 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 30 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.+.+-++|..+|.+.|+|.- .+......+|.+..+.|++.||-|++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 66788899999999999982 222344459999999999999999885
No 241
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=27.90 E-value=49 Score=34.63 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCEEE-----EeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 27 EDRLLRAKALGLNTIQ-----TYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
++.|+++|++|++.+. ++..--++.-.++...++ +..+.++.|++.|+.+
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 5568888888887554 221111122234443333 5568899999999875
No 242
>PRK09875 putative hydrolase; Provisional
Probab=27.83 E-value=1.7e+02 Score=30.18 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCcccccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~ 102 (491)
.+.-...|+.+|++|.+||=-- .+ ..-.||...+.+++++-|+.||...|-|.-. -.|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd~--------T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIEM--------TN----RYMGRNAQFMLDVMRETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEec--------CC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 4556667899999999998322 21 1123699999999999999999999988532 35777764
No 243
>PTZ00377 alanine aminotransferase; Provisional
Probab=27.81 E-value=2.3e+02 Score=30.76 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=42.1
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+.+..+..++.+...++-|-++--+++. |-|.|.=-.++=+ .+.+++++|+++|++||.-
T Consensus 198 ~~~d~~~l~~~l~~~~~~~~~~k~l~l~-~P~NPTG~~~s~e---~~~~i~~~a~~~~~~iI~D 257 (481)
T PTZ00377 198 WSLDQEELEEAYEQAVRNGITPRALVVI-NPGNPTGQVLTRD---VMEEIIKFCYEKGIVLMAD 257 (481)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEE-CCCCCCCcCCCHH---HHHHHHHHHHHCCCEEEEe
Confidence 3455666666665554445555445665 6788877677666 8999999999999998875
No 244
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.69 E-value=1.3e+02 Score=28.79 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEE-----eccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 29 RLLRAKALGLNTIQT-----YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~-----yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..+.+++.|+.+|=+ -|+|+--+..| .+.+.++.++++|++|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 467899999999965 68899999988 8999999999999997764
No 245
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=27.66 E-value=1.2e+02 Score=31.47 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=62.6
Q ss_pred CEEEEeccCCCcCCC-CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHH
Q 011211 39 NTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYL 117 (491)
Q Consensus 39 N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~ 117 (491)
+.|.++|.|++|=-. | =...|+.|+++|.+|+=- |.-||+.| ..|+.+ |.-++.+-.|
T Consensus 27 ~yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vLGT----iife~~~~--~~~~~~----ll~~~~~g~~- 85 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVLGT----IIFEWGGG--AEWCEE----LLEKDEDGSF- 85 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EEEE----EEEEEE----HHHHHH----HT---TTS---
T ss_pred cceeeEeecccccccCC----------CchhHHHHHhcCceEEEE----EEecCCch--HHHHHH----HHcCCccccc-
Confidence 356778888844321 1 155899999999998643 33388743 466543 2222333333
Q ss_pred HHHHHHHHHHHHHhccccccCCCCeEEEcccCccCC-cC--CcHHHHHHHHHHHHHhcCCceEEEEecC
Q 011211 118 QLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-YG--DDKEYLHHLVTLARAHLGKDIILYTTDG 183 (491)
Q Consensus 118 ~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~-~~--~~~~y~~~l~~~~~~~~G~~vpl~t~d~ 183 (491)
++.++|+++.+-+-+ .| ..+-+|+..+. .. .-..+++.|++.+++.-+..|.+|.+..
T Consensus 86 ----~~A~kLi~ia~~yGF--DG--w~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~~~~~~v~WYDs~t 146 (311)
T PF03644_consen 86 ----PYADKLIEIAKYYGF--DG--WLINIETPLSGPEDAENLIDFLKYLRKEAHENPGSEVIWYDSVT 146 (311)
T ss_dssp ----HHHHHHHHHHHHHT----E--EEEEEEESSTTGGGHHHHHHHHHHHHHHHHHT-T-EEEEES-B-
T ss_pred ----HHHHHHHHHHHHcCC--Cc--eEEEecccCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEeecCC
Confidence 234567777776554 23 67899999875 22 2467788888887762145688887643
No 246
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=27.62 E-value=1.5e+02 Score=30.14 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHH-------HHhccccc
Q 011211 64 DLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLL-------PKIAPLLY 136 (491)
Q Consensus 64 dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~-------~~l~~~~~ 136 (491)
...+++..|++.|-..+|-|-- .-||.|.|..-. +.+-+..+.=+++-++|+..-+ ++|+.+..
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fPEA------fiGGYPrg~~Fg---~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~~la~ 108 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFPEA------FIGGYPRGFRFG---LAVGVRNEEGRDEFRKYHASAIEVPGPEVERLAELAK 108 (337)
T ss_pred HHHHHHHHHhcCCceEEEeehH------hccCCCCcceee---EEEeecchhhhHHHHHHHHHhhcCCChHHHHHHHHhh
Confidence 5678899999999999998744 458999998653 4444444444444444443322 12333333
Q ss_pred cCCCCeEEEcccCc
Q 011211 137 DIGGPIVMVQIENE 150 (491)
Q Consensus 137 ~~gGpII~~QiENE 150 (491)
.|.-.++|=-||-|
T Consensus 109 ~~~v~lv~G~iEre 122 (337)
T KOG0805|consen 109 KNNVYLVMGAIERE 122 (337)
T ss_pred cCCeEEEEEEEecc
Confidence 34445666667776
No 247
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=27.58 E-value=28 Score=34.86 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
...++|++|++.|-+- |..++-.|. +.+..+.+=++.|.++||.+|+|.|
T Consensus 76 S~~mL~d~G~~~viiG-----HSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 76 SAEMLKDLGCKYVIIG-----HSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp BHHHHHHTTESEEEES-----CHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHhhCCEEEec-----cccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 3568999999988885 544443333 3345899999999999999999976
No 248
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=27.49 E-value=1.4e+02 Score=33.04 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=48.1
Q ss_pred eCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccC
Q 011211 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (491)
Q Consensus 16 ~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~ 92 (491)
+-|-..|.+.-+.-++++++.|+.+++++-..|.. . ++...++.+++.|..|.+. ||.+.+
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~---------~---n~~~ai~~ak~~G~~~~~~----i~yt~s 157 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP---------R---NIQQALRAVKKTGKEAQLC----IAYTTS 157 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH---------H---HHHHHHHHHHHcCCEEEEE----EEEEeC
Confidence 44555566666777999999999999999877732 2 8999999999999998865 776654
No 249
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=27.43 E-value=1.1e+02 Score=30.96 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=49.1
Q ss_pred EeeE-EEEEeeCC-CCCChhhHHHHHHHHHHcCCCEEEEeccCCCc-CC--------CCCeeeeccchhHHHHHHHHHHc
Q 011211 7 EPFR-IIGGDLHY-FRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EP--------KPGKLVFSGIADLVSFLKLCQKL 75 (491)
Q Consensus 7 kp~~-~~sG~~Hy-~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep--------~~G~~dF~g~~dl~~fl~la~~~ 75 (491)
++++ +..|.-+. =|||.++|.+.++.+++.|+..| +.+.-- |. ....-+..|..+|..++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 3444 34444454 47999999999999988887654 333211 11 01124666777888888888877
Q ss_pred CCeEEecCCC
Q 011211 76 DLLVMLRPGP 85 (491)
Q Consensus 76 gL~VilrpGP 85 (491)
.+.|---.||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 7777777666
No 250
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=27.21 E-value=91 Score=35.75 Aligned_cols=50 Identities=12% Similarity=-0.028 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCC
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpG 84 (491)
..+++|++|++.|-+- |..++..|.=+ +..+.+=++.|.++||.+|+|.|
T Consensus 473 Sa~mLkd~G~~~viiG-----HSERR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 473 SGPMLAEIGVEYVIIG-----HSERRQYFGET-DELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred CHHHHHHcCCCEEEEC-----cccccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 4678999999999887 66666555433 23455555999999999999976
No 251
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=26.99 E-value=2.1e+02 Score=24.98 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=43.1
Q ss_pred EeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcC---CCCCeeeeccchhHHHHHHHHHHc-CCeEEec
Q 011211 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE---PKPGKLVFSGIADLVSFLKLCQKL-DLLVMLR 82 (491)
Q Consensus 14 G~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE---p~~G~~dF~g~~dl~~fl~la~~~-gL~Vilr 82 (491)
|=++=-=.|.+.+..++++|+..|+.+|..-.==-... +=| .++++.+..++. |+.||..
T Consensus 42 gf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP---------~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 42 GFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP---------HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC---------CHHHHHHHHHHHhCCCEeee
Confidence 33343336788999999999999999998853322222 223 578888888887 9998864
No 252
>PRK08227 autoinducer 2 aldolase; Validated
Probab=26.81 E-value=74 Score=32.35 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
..+.+-++|..+|.++|+|.-. +.-....+|.+..+.|++.||-+|+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~------~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSE------YEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCH------HHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3667889999999999999821 1122334999999999999999886
No 253
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=26.81 E-value=1.3e+02 Score=27.41 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=47.8
Q ss_pred CEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEecc-CCCcCCCCCeeeeccchhHHHHHHHHHHcCCe-EEecC
Q 011211 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP-WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRP 83 (491)
Q Consensus 6 Gkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~-Vilrp 83 (491)
++|.+++. |-+-.....|+..++.++ .|++++..-.+ ....+..+..+++.. ..+.+.+++++.+.. |++
T Consensus 12 ~~~~li~~---hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~l-- 83 (251)
T TIGR02427 12 GAPVLVFI---NSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGIERAVF-- 83 (251)
T ss_pred CCCeEEEE---cCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCCCceEE--
Confidence 45655553 666667889988888876 48888877544 555444444555552 233444445555543 222
Q ss_pred CCccccccCCCCCccc
Q 011211 84 GPYICAEWDLGGFPAW 99 (491)
Q Consensus 84 GPyi~aEw~~GGlP~W 99 (491)
.-++.||.=.+
T Consensus 84 -----iG~S~Gg~~a~ 94 (251)
T TIGR02427 84 -----CGLSLGGLIAQ 94 (251)
T ss_pred -----EEeCchHHHHH
Confidence 12778887554
No 254
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.73 E-value=1.5e+02 Score=30.17 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=27.5
Q ss_pred CEeeEEEE-Ee-e-CCCCCChhhHHHHHHHHHHcCCCEEEE
Q 011211 6 GEPFRIIG-GD-L-HYFRILPQHWEDRLLRAKALGLNTIQT 43 (491)
Q Consensus 6 Gkp~~~~s-G~-~-Hy~R~p~~~W~~~l~k~ka~G~N~V~~ 43 (491)
++|++++. |+ . .+=|||.++|.+.++.+.+.|+..|=+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~ 213 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF 213 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 46666554 33 3 456899999999999998878766544
No 255
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.53 E-value=72 Score=36.84 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCEEEE-ec--------cCCCcCC----CCCeeeec----cchhHHHHHHHHHHcCCeEEecC
Q 011211 27 EDRLLRAKALGLNTIQT-YV--------PWNLHEP----KPGKLVFS----GIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~-yv--------~Wn~hEp----~~G~~dF~----g~~dl~~fl~la~~~gL~Vilrp 83 (491)
+++|..+|.+|.|+|+. .| .|..+-- .-+.|--. ..+++...++.|+..||.|||-.
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45599999999999997 22 2443320 00011000 02389999999999999999973
No 256
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.42 E-value=45 Score=35.58 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=58.3
Q ss_pred eecCEeeEEEEEeeCCC----------------CCChhhHHHHHHHHH-HcCCCEEEEeccCCCcCCCCCeeeeccchhH
Q 011211 3 RKDGEPFRIIGGDLHYF----------------RILPQHWEDRLLRAK-ALGLNTIQTYVPWNLHEPKPGKLVFSGIADL 65 (491)
Q Consensus 3 ~~dGkp~~~~sG~~Hy~----------------R~p~~~W~~~l~k~k-a~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl 65 (491)
...|.++++.+=.+|+| +-.-..|+-++..+. +.==+.|..|+.=|=|.|.=-+|.=+ .|
T Consensus 104 T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~e---eL 180 (388)
T COG1168 104 TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKE---EL 180 (388)
T ss_pred CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHH---HH
Confidence 34455666666555555 112334443444443 22223488899999999998888877 99
Q ss_pred HHHHHHHHHcCCeEEecCCCccccccCCCC
Q 011211 66 VSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (491)
Q Consensus 66 ~~fl~la~~~gL~VilrpGPyi~aEw~~GG 95 (491)
.++.++|++||+.||--= |+|.--.+|
T Consensus 181 ~~i~elc~kh~v~VISDE---IHaDlv~~g 207 (388)
T COG1168 181 RKIAELCLRHGVRVISDE---IHADLVLGG 207 (388)
T ss_pred HHHHHHHHHcCCEEEeec---ccccccccC
Confidence 999999999999999742 555555555
No 257
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=26.16 E-value=3.6e+02 Score=24.77 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=63.0
Q ss_pred EeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec--cchhHHHHHHHHHHcCCeEEecCC
Q 011211 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLRPG 84 (491)
Q Consensus 7 kp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~la~~~gL~VilrpG 84 (491)
-..++++...|....+|+.|.+-+.+++...++...+.++= .. ++..++ ...-+..+-+++++.|..+|-.
T Consensus 45 ~d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk~v~~fg-~g----~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~-- 117 (167)
T TIGR01752 45 YDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKTVALFG-LG----DQEGYSETFCDGMGILYDKIKARGAKVVGF-- 117 (167)
T ss_pred CCEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCCEEEEEe-cC----CCCcccHHHHHHHHHHHHHHHHcCCeEEce--
Confidence 35677877777677777899999998887766655554431 11 111111 0112566667778889886543
Q ss_pred CccccccCCCCCccccccCCCCee-Ee---cCCHHH-HHHHHHHHHHHHHHh
Q 011211 85 PYICAEWDLGGFPAWLLAKKPALK-LR---SSDRAY-LQLVERWWGVLLPKI 131 (491)
Q Consensus 85 Pyi~aEw~~GGlP~WL~~~~~~~~-~R---s~d~~y-~~~~~~~~~~l~~~l 131 (491)
+-|-.+.+-+.++ +... ..+. +. .+.+.. -++.++|.++|.+.+
T Consensus 118 -~~~~gy~~~~~~~-~~~~-~~f~gl~~~~~~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 118 -WPTDGYHFEASKA-VRDG-DKFVGLALDEDNQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred -ecCCCcccccchh-eeCC-CEEEEEEecCCCchhhhHHHHHHHHHHHHHhh
Confidence 2343333333333 2111 0011 11 222333 477889988887664
No 258
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.14 E-value=1.6e+02 Score=27.52 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec-CCCcc
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYI 87 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr-pGPyi 87 (491)
.+++++++|.+.|.+. .|+ +...+.++++.|+++|+.+++- ++|.-
T Consensus 69 ~~~~~~~aGad~i~~h-----~~~--------~~~~~~~~i~~~~~~g~~~~v~~~~~~t 115 (202)
T cd04726 69 EAEMAFKAGADIVTVL-----GAA--------PLSTIKKAVKAAKKYGKEVQVDLIGVED 115 (202)
T ss_pred HHHHHHhcCCCEEEEE-----eeC--------CHHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 4578899999999986 222 1236789999999999998874 76643
No 259
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=26.12 E-value=1.5e+02 Score=33.01 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
|...|.+.-+..++++.+.|+..++++.+.|.. +++...++.+++.|..+...
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 666678888899999999999999999988877 49999999999999987443
No 260
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=26.09 E-value=57 Score=34.28 Aligned_cols=60 Identities=15% Similarity=0.012 Sum_probs=40.7
Q ss_pred EEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEecc---CCCcCCCCCeeeeccchhHHHHHHHHHHcCCe
Q 011211 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP---WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL 78 (491)
Q Consensus 12 ~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~ 78 (491)
++-+.++.-+. ++.++.+|++|+|.|++-|- -..++.-....+++ ++.+.++.+++.|+.
T Consensus 89 it~e~~p~~l~----~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 89 FTFEANPGDLT----KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 34456665554 36678999999999998754 22222222334444 889999999999976
No 261
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=26.08 E-value=7.7e+02 Score=25.71 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=67.9
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEE-------eccCCCcCCCCCeeeeccch-hHHHHHHHHHHcCCeEEecCCCccc-cc
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIA-DLVSFLKLCQKLDLLVMLRPGPYIC-AE 90 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~g~~-dl~~fl~la~~~gL~VilrpGPyi~-aE 90 (491)
...++.| ++.+|++|+.-|=. +..|...-..-.+-+-...+ -+..|.+.|+++||++.+= .. .+
T Consensus 90 ~fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y----~S~~d 162 (346)
T PF01120_consen 90 KFDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLY----YSPWD 162 (346)
T ss_dssp T--HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEE----EESSS
T ss_pred cCCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEE----ecchH
Confidence 3445555 46789999987644 45576654433333322223 5678999999999988873 32 24
Q ss_pred cCCCCCccccccCCCCeeEecCCHHHHHHHH-HHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHHH
Q 011211 91 WDLGGFPAWLLAKKPALKLRSSDRAYLQLVE-RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLAR 169 (491)
Q Consensus 91 w~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~-~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~ 169 (491)
|.....+.-...... ......+.+-+.++ .|+.+|-+.+.++.. -+|=+-..... ..+.--...+.++++
T Consensus 163 w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~----d~lWfDg~~~~---~~~~~~~~~~~~~i~ 233 (346)
T PF01120_consen 163 WHHPDYPPDEEGDEN--GPADGPGNWQRYYNEYWLAQLRELLTRYKP----DILWFDGGWPD---PDEDWDSAELYNWIR 233 (346)
T ss_dssp CCCTTTTSSCHCHHC--C--HCCHHHHHHHHHHHHHHHHHHHHCSTE----SEEEEESTTSC---CCTHHHHHHHHHHHH
T ss_pred hcCcccCCCccCCcc--cccccchhhHhHhhhhhHHHHHHHHhCCCc----ceEEecCCCCc---cccccCHHHHHHHHH
Confidence 443332222211111 01123344555555 445555555555421 22322222211 122223477888888
Q ss_pred HhcCCceEEE
Q 011211 170 AHLGKDIILY 179 (491)
Q Consensus 170 ~~~G~~vpl~ 179 (491)
+. .-++++.
T Consensus 234 ~~-qp~~ii~ 242 (346)
T PF01120_consen 234 KL-QPDVIIN 242 (346)
T ss_dssp HH-STTSEEE
T ss_pred Hh-CCeEEEe
Confidence 86 6666554
No 262
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=26.07 E-value=98 Score=34.67 Aligned_cols=63 Identities=17% Similarity=0.101 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCee---------eeccchhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKL---------VFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~---------dF~g~~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
.+.|+.+|++|+++|-+-=+=...++.-|-. .|.-..|+..+|+.+++.||++|+..-|=-|+
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~ 114 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRS 114 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCC
Confidence 5679999999999998854444444433321 23334699999999999999999986654444
No 263
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=26.04 E-value=73 Score=31.01 Aligned_cols=67 Identities=15% Similarity=0.282 Sum_probs=37.7
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeee---ccchhHHHHHHHHHHcCCeEEecCCCcccc
Q 011211 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVF---SGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF---~g~~dl~~fl~la~~~gL~VilrpGPyi~a 89 (491)
..|++.+|--..-+.+|+-||.+.-.--.=..|-.. .|-+ .| .+++=+... +..=++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sS--rFlY~k~KG--EvE~~v~eL-~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSS--RFLYMKMKG--EVERDVIEL-DFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCccc--ceeeeeccc--hhhhhhhhc-cccEEEEecCcceecc
Confidence 458899999999999999999876543222222111 1211 11 111111100 2334699999997774
No 264
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.02 E-value=1.1e+02 Score=31.93 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
++++++.+.|+..|++.+.++.. ..+.+.++.|+++|+.|...
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEE
Confidence 56888999999999998765542 16799999999999998775
No 265
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.48 E-value=2.8e+02 Score=20.49 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCe----eeec--cchhHHHHHHHHHHcCCeEE
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK----LVFS--GIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~----~dF~--g~~dl~~fl~la~~~gL~Vi 80 (491)
|....+.++.+.+.|+|.+++...=...+...+. +.++ ...+++.+++..++.|..|.
T Consensus 9 ~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 5677889999999999999885321111111333 3333 33578899999999997663
No 266
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=25.44 E-value=7.4e+02 Score=25.38 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred HHHHHHcCCCEEEE---eccCCCcCCCCCeeeecc--chhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCC
Q 011211 30 LLRAKALGLNTIQT---YVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKK 104 (491)
Q Consensus 30 l~k~ka~G~N~V~~---yv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~ 104 (491)
|+--.+.|+..-++ -+||.-|+ .-.|++.. ...|.+.=++|+++||.+-+-||.|+-
T Consensus 51 L~~n~~~~I~~yRisS~liP~ashp--~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~v---------------- 112 (275)
T PF03851_consen 51 LEYNIAHGIRFYRISSDLIPLASHP--EVGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTV---------------- 112 (275)
T ss_dssp HHHHHHTT--EEE--TTSSTTTTST--T--S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT------------------
T ss_pred HHHHHHcCCCEEecCcccCCCCCCc--ccccchHHHHHHHHHHHHHHHHHcCCeEEecCCccee----------------
Confidence 44446778888877 37899998 22355542 236677778889999999999998752
Q ss_pred CCeeEecCCHHHHHHHHHHHHHHHHHhccccccCC-CCeEEEcccCccCCcCCcHHHHHHHHHHHHH
Q 011211 105 PALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIG-GPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (491)
Q Consensus 105 ~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~g-GpII~~QiENEyg~~~~~~~y~~~l~~~~~~ 170 (491)
+-|.+|.-.++.-+-+..-...+.-+-.... +.+|-+.+. |.||+..+-++.+.+.++.
T Consensus 113 ----LnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~G---G~YgdK~~al~RF~~~~~~ 172 (275)
T PF03851_consen 113 ----LNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVG---GVYGDKEAALERFIENFKR 172 (275)
T ss_dssp ----TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-------SS-HHHHHHHHHHHHHT
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeC---CCCCChHHHHHHHHHHHhh
Confidence 3344554444444444443333333322221 467778885 3466555555555555543
No 267
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.44 E-value=1.6e+02 Score=33.36 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 17 Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
-|-..|.+.-+..++++.++|+..|+++.+.|.. +++...++.|+++|+.|...
T Consensus 84 G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 84 GYRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEE
Confidence 3445566777888999999999999999888763 48999999999999987754
No 268
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=25.43 E-value=1.3e+02 Score=32.77 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=42.7
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCe-EEecCC
Q 011211 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPG 84 (491)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~-VilrpG 84 (491)
+..+.-+.-|+.+|++|+|.|-+++.=..--..+-.|.=+ ..|-...++++.+.|.. .+|-.|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeecC
Confidence 3456778889999999999999986543322222222211 23667788899999988 556654
No 269
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.34 E-value=2.1e+02 Score=27.72 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCee
Q 011211 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALK 108 (491)
Q Consensus 29 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~ 108 (491)
-+++++.+|.+.|.+.+ | ...++.++|+.++++|+++-+- ++-+++.--+-.+|....- +.
T Consensus 72 ~i~~~~~~g~~~i~~H~-----E---------~~~~~~~~i~~ik~~g~k~Gia----lnP~T~~~~~~~~l~~vD~-Vl 132 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHA-----E---------ATEDPKETIKYIKEAGIKAGIA----LNPETPVEELEPYLDQVDM-VL 132 (201)
T ss_dssp HHHHHHHHT-SEEEEEG-----G---------GTTTHHHHHHHHHHTTSEEEEE----E-TTS-GGGGTTTGCCSSE-EE
T ss_pred HHHHHHhcCCCEEEEcc-----c---------chhCHHHHHHHHHHhCCCEEEE----EECCCCchHHHHHhhhcCE-EE
Confidence 35567888999887762 2 2237899999999999996554 2223333334445543321 34
Q ss_pred EecCCH-----HHHHHHHHHHHHHHHHhc
Q 011211 109 LRSSDR-----AYLQLVERWWGVLLPKIA 132 (491)
Q Consensus 109 ~Rs~d~-----~y~~~~~~~~~~l~~~l~ 132 (491)
+-|-+| .|+..+-+=++++-..+.
T Consensus 133 vMsV~PG~~Gq~f~~~~~~KI~~l~~~~~ 161 (201)
T PF00834_consen 133 VMSVEPGFGGQKFIPEVLEKIRELRKLIP 161 (201)
T ss_dssp EESS-TTTSSB--HGGHHHHHHHHHHHHH
T ss_pred EEEecCCCCcccccHHHHHHHHHHHHHHH
Confidence 455555 345444443344333333
No 270
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.23 E-value=1.3e+02 Score=31.54 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
++|+++.++|+..|++.+..+..+ .+.+.++.|++.|+.|..-
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~d------------~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEAD------------VSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchHH------------HHHHHHHHHHHcCCeEEEE
Confidence 468899999999999987654331 5789999999999998765
No 271
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=25.23 E-value=3.2e+02 Score=26.85 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=59.3
Q ss_pred HHHcCCCEEEEeccCCCcCCCCCeeeec-cchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEec
Q 011211 33 AKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRS 111 (491)
Q Consensus 33 ~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs 111 (491)
+-...+..|-.-.+ . =...|...+. ...++..+++.|++.|++|++..|- |..+.+ . . -.
T Consensus 18 ~~~~~lThv~~~f~-~--i~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~--------~--~-~~ 78 (253)
T cd06545 18 IDFSKLTHINLAFA-N--PDANGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEF--------T--A-AL 78 (253)
T ss_pred CChhhCCeEEEEEE-E--ECCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcc--------h--h-hh
Confidence 33344555544321 1 1235666664 3457899999999999999998651 221110 0 1 12
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHH---HHHHHHHH
Q 011211 112 SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLH---HLVTLARA 170 (491)
Q Consensus 112 ~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~---~l~~~~~~ 170 (491)
+++.- .+++.+.++..++.+.+ =++.|+=|+.... ...|.. .|++.+++
T Consensus 79 ~~~~~---r~~fi~~lv~~~~~~~~------DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 79 NDPAK---RKALVDKIINYVVSYNL------DGIDVDLEGPDVT-FGDYLVFIRALYAALKK 130 (253)
T ss_pred cCHHH---HHHHHHHHHHHHHHhCC------CceeEEeeccCcc-HhHHHHHHHHHHHHHhh
Confidence 34433 34667778887777643 2466666764322 234444 44444443
No 272
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.07 E-value=1.3e+02 Score=30.45 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
++-+++++++|++.|-+. -+|-+ ..+.|++.|+++||..|+-.
T Consensus 109 e~F~~~~~~aGvdgviip-----DLP~e---------e~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIP-----DLPYE---------ESDYLISVCNLYNIELILLI 151 (263)
T ss_pred HHHHHHHHHcCCeEEEec-----CCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 556788888888888885 22221 56788888888888866653
No 273
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.69 E-value=1.7e+02 Score=25.92 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccC-------------------CCcCCCCCee-eeccchhHHHHHHHHHHcCCeEEec
Q 011211 24 QHWEDRLLRAKALGLNTIQTYVPW-------------------NLHEPKPGKL-VFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 24 ~~W~~~l~k~ka~G~N~V~~yv~W-------------------n~hEp~~G~~-dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+....-.+.++..|+.++.....- .... ..+.+ =+||+.|+...++.++++|..|++-
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVV 129 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEE
Confidence 455666778889999999987542 1111 23333 4589999999999999999999886
No 274
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=24.55 E-value=1.5e+02 Score=29.42 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec-----cch-----hH-HHH-HHHHHHcCCeEEecCCCccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-----GIA-----DL-VSF-LKLCQKLDLLVMLRPGPYIC 88 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-----g~~-----dl-~~f-l~la~~~gL~VilrpGPyi~ 88 (491)
.+..++.++.+.++|++.-.+. ||-.||||-.. +.. .+ ... =++|+++|+.+.+-|=|+..
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~h-----~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~ 140 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQIH-----HEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSG 140 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEEE-----EESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTT
T ss_pred HHHHHHHHHHHHHhhccccccc-----cccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCC
Confidence 6677889999999999988887 99999998554 111 11 122 25678999999999888654
No 275
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=24.49 E-value=1e+02 Score=30.75 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=26.3
Q ss_pred EeeCCCCCCh--hhHHHHHHHHHHcCCCEEEEec
Q 011211 14 GDLHYFRILP--QHWEDRLLRAKALGLNTIQTYV 45 (491)
Q Consensus 14 G~~Hy~R~p~--~~W~~~l~k~ka~G~N~V~~yv 45 (491)
+++|.|.-.| +.|.+.+++|++.|.+.|.+-+
T Consensus 140 ~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~ 173 (253)
T PRK02412 140 LSYHDFEKTPPKEEIVERLRKMESLGADIVKIAV 173 (253)
T ss_pred EeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5899886665 5677899999999999998864
No 276
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.06 E-value=1.1e+02 Score=30.56 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe
Q 011211 20 RILPQHWEDRLLRAKALGLNTIQTY 44 (491)
Q Consensus 20 R~p~~~W~~~l~k~ka~G~N~V~~y 44 (491)
..|.+.|++..+..|+.|+....+.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stp 76 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTP 76 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECC
Confidence 5688999999999999999999996
No 277
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.04 E-value=1.4e+02 Score=33.75 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.3
Q ss_pred eCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 16 ~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
..|...|...-+..++++.++|+..|+++.+-|.. +++...++.|+++|+.|...
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHcCCEEEEE
Confidence 34555677777888999999999999999887764 38999999999999987744
No 278
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=1e+02 Score=30.39 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCC-------C----CccccccC-----CC----------Ce
Q 011211 54 PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-------G----FPAWLLAK-----KP----------AL 107 (491)
Q Consensus 54 ~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~G-------G----lP~WL~~~-----~~----------~~ 107 (491)
.+.|..+=+.++++.|+-|+..-=. |+|-+|..|-... | +=.|.-+. ++ .|
T Consensus 74 ~~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESM 150 (221)
T COG2360 74 QSPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESM 150 (221)
T ss_pred cCCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhh
Confidence 3456666666899999999875322 8888888764321 1 12232111 11 01
Q ss_pred eEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCcc----CCcC-CcHHHHHHHHH
Q 011211 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF----GSYG-DDKEYLHHLVT 166 (491)
Q Consensus 108 ~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEy----g~~~-~~~~y~~~l~~ 166 (491)
.-|-.| +.+--+-.++++++.+ |+.+|=.|+.||. |.+. ..++|.+.|++
T Consensus 151 Fsr~~n-----ASKialv~lv~~L~~~----g~~LiD~Q~~n~HL~~~GA~~ipr~~y~~~L~~ 205 (221)
T COG2360 151 FSRATN-----ASKIALVHLVEHLRRH----GFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRR 205 (221)
T ss_pred hhcCCC-----chHHHHHHHHHHHHhc----CceEEeeecCCHHHHhcCCeecCHHHHHHHHHH
Confidence 112222 3344445566666654 7899999999994 5554 58999999998
No 279
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=23.87 E-value=6e+02 Score=24.89 Aligned_cols=78 Identities=9% Similarity=0.139 Sum_probs=55.1
Q ss_pred ceecCEeeEEEEEeeCCCCCC-------------------------hhhHHHHHHHHHHcCCCEEEEeccCCC-cCCCCC
Q 011211 2 FRKDGEPFRIIGGDLHYFRIL-------------------------PQHWEDRLLRAKALGLNTIQTYVPWNL-HEPKPG 55 (491)
Q Consensus 2 f~~dGkp~~~~sG~~Hy~R~p-------------------------~~~W~~~l~k~ka~G~N~V~~yv~Wn~-hEp~~G 55 (491)
+.++|.++-+++......... .+.-.++++++| .+...|=.++.|.. .+..|
T Consensus 124 ~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~p- 201 (250)
T PF09587_consen 124 IEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENYP- 201 (250)
T ss_pred EEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCCC-
Confidence 357888888888876642211 155677888888 68999999999962 22222
Q ss_pred eeeeccchhHHHHHHHHHHcCCeEEecCCCcc
Q 011211 56 KLVFSGIADLVSFLKLCQKLDLLVMLRPGPYI 87 (491)
Q Consensus 56 ~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi 87 (491)
..+..++.+.+-+.|..+|+.=+|-+
T Consensus 202 ------~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 202 ------TPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred ------CHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 22667777888889999999866654
No 280
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=23.80 E-value=1.9e+02 Score=31.77 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 19 ~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+++..+..+..++++++.+.++=-+++. |-|.|.=-.++=+ .+.+++++|+++++.||.-
T Consensus 179 ~~~~~~~le~a~~~a~~~~~~~k~l~l~-nP~NPTG~~~s~e---~l~~L~~~a~~~~i~lI~D 238 (496)
T PLN02376 179 FKLTVDAADWAYKKAQESNKKVKGLILT-NPSNPLGTMLDKD---TLTNLVRFVTRKNIHLVVD 238 (496)
T ss_pred CcCCHHHHHHHHHHHHhcCCCeeEEEEc-CCCCCCCccCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 4566666666666666666665445666 8888887777766 8999999999999998874
No 281
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=23.54 E-value=80 Score=37.60 Aligned_cols=56 Identities=27% Similarity=0.368 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEE------------eccCCCcC------CCCCeeeeccchhHHHHHHHHHH-cCCeEE
Q 011211 22 LPQHWEDRLLRAKALGLNTIQT------------YVPWNLHE------PKPGKLVFSGIADLVSFLKLCQK-LDLLVM 80 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~------------yv~Wn~hE------p~~G~~dF~g~~dl~~fl~la~~-~gL~Vi 80 (491)
|-+.|+.+|+++|+.|.|+|.. |-.-+.|| ..-++|.|+ |+.++++-|++ -++.-|
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi 214 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSI 214 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeee
Confidence 6789999999999999999975 22222222 233568888 99999998865 465433
No 282
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.51 E-value=3.2e+02 Score=29.02 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeecc--chhHHHHHHHHHHcCCeEEecC
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~gL~Vilrp 83 (491)
.+.-.+..+.+|+.|+..++-..+= |+.--|.|.| ...+..+-+.|++.||.++-.|
T Consensus 131 ~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 131 YEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred HHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 6677778888999999998865433 4444466765 4588889999999999999874
No 283
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.46 E-value=49 Score=31.11 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHc-CCeEEecCCCcccccc---CCCCCcccccc
Q 011211 63 ADLVSFLKLCQKL-DLLVMLRPGPYICAEW---DLGGFPAWLLA 102 (491)
Q Consensus 63 ~dl~~fl~la~~~-gL~VilrpGPyi~aEw---~~GGlP~WL~~ 102 (491)
..+.+|++..+++ |.+++|=.++...... .....|.|+.+
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~ 146 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIAN 146 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEe
Confidence 3677888888887 8888887666433221 22355777765
No 284
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=23.22 E-value=37 Score=33.91 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCee--eeccchhHHHH-HHHHHHcCCeEEecCC
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKL--VFSGIADLVSF-LKLCQKLDLLVMLRPG 84 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--dF~g~~dl~~f-l~la~~~gL~VilrpG 84 (491)
.++|+||+..|+.+|-+--+|.+--..+++| .|+ .|..+ ..-|.+.||++-+..|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~---rl~~~E~~Ra~~~Gl~~~vavG 71 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFR---RLLGVEPERAEKAGLKLKVAVG 71 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHH---HHHccchhhHHhhCceeeEEec
Confidence 4789999999999999998888555556665 333 33333 4568899999877754
No 285
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=23.14 E-value=3e+02 Score=29.86 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=54.5
Q ss_pred cCCCCCeeeeccc-------------hhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHH
Q 011211 50 HEPKPGKLVFSGI-------------ADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAY 116 (491)
Q Consensus 50 hEp~~G~~dF~g~-------------~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y 116 (491)
.||. |+|.|+|. +++..+=+.|++.||-.+-. |+-|.|.....| +.--++|
T Consensus 93 lEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvGl-----------G~~Pkw~r~e~p----~mpk~RY 156 (456)
T COG3572 93 LEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVGL-----------GGSPKWTRAEVP----VMPKSRY 156 (456)
T ss_pred eccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEee-----------cCCCccccCcCC----CCCchHH
Confidence 4666 89999984 35566666666777664433 788999988655 2334455
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHH
Q 011211 117 LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVT 166 (491)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~ 166 (491)
+.+.+|+.++.-+=....+ -+..+||-=.+++ ..+|.+..+-
T Consensus 157 -~iM~~Ympkvg~~glDMm~----rtctiQVNLD~ss---e~dm~rk~rv 198 (456)
T COG3572 157 -AIMTRYMPKVGVKGLDMMT----RTCTIQVNLDFSS---ETDMRRKMRV 198 (456)
T ss_pred -HHHHHHHhhcCCcchhhhh----hhheeEEeeccCc---chhHHHHHHH
Confidence 4566666662222122222 2667788555543 4555555443
No 286
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.11 E-value=2e+02 Score=28.91 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHH-HcCCeEEecCCCccccccCCCCC
Q 011211 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ-KLDLLVMLRPGPYICAEWDLGGF 96 (491)
Q Consensus 18 y~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~-~~gL~VilrpGPyi~aEw~~GGl 96 (491)
-.+...+.-.+..+.+-++|++.|++-.+....+...|..-|.....+.++.++.+ +.-+-+.+|++-. -
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~ 84 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND---------D 84 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC---------C
Confidence 34667888899999999999999999888876666677777764445555555543 3444456676521 1
Q ss_pred cccccc--CCCCe-eEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHHHHhcC
Q 011211 97 PAWLLA--KKPAL-KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLG 173 (491)
Q Consensus 97 P~WL~~--~~~~~-~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~~~G 173 (491)
..++.. ..+ + .+|-..+. +.++ -...+++.++.+ |--+.++++.=++ .+.+|+..+.+.+.+. |
T Consensus 85 ~~~l~~a~~~g-v~~iri~~~~--~~~~-~~~~~i~~ak~~-----G~~v~~~~~~a~~---~~~~~~~~~~~~~~~~-g 151 (266)
T cd07944 85 IDLLEPASGSV-VDMIRVAFHK--HEFD-EALPLIKAIKEK-----GYEVFFNLMAISG---YSDEELLELLELVNEI-K 151 (266)
T ss_pred HHHHHHHhcCC-cCEEEEeccc--ccHH-HHHHHHHHHHHC-----CCeEEEEEEeecC---CCHHHHHHHHHHHHhC-C
Confidence 112211 111 1 13332211 1111 122233333333 3345577766443 4566777777777776 8
Q ss_pred CceEEEEecCC
Q 011211 174 KDIILYTTDGG 184 (491)
Q Consensus 174 ~~vpl~t~d~~ 184 (491)
.+. ++-+|.-
T Consensus 152 ~~~-i~l~DT~ 161 (266)
T cd07944 152 PDV-FYIVDSF 161 (266)
T ss_pred CCE-EEEecCC
Confidence 774 5556653
No 287
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.08 E-value=1.9e+02 Score=29.17 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=49.3
Q ss_pred ecCEeeEEEEEeeCCCCCC-hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec--cchhHHHHHHHHHHcCCeEE
Q 011211 4 KDGEPFRIIGGDLHYFRIL-PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVM 80 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~R~p-~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~la~~~gL~Vi 80 (491)
+.+..+++++| +-.+. .+.-.+..+.+|++|....+.|++=+...| +.|. |..-|..+-+.|++.||.++
T Consensus 21 ~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~~~~~~Gl~~~ 93 (260)
T TIGR01361 21 IGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRRAADEHGLPVV 93 (260)
T ss_pred EcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHHHHHHhCCCEE
Confidence 44344556777 32332 666677788888999887776665433332 4565 35678888889999999998
Q ss_pred ecC
Q 011211 81 LRP 83 (491)
Q Consensus 81 lrp 83 (491)
..|
T Consensus 94 t~~ 96 (260)
T TIGR01361 94 TEV 96 (260)
T ss_pred Eee
Confidence 874
No 288
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.69 E-value=2.1e+02 Score=25.87 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=47.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeec-----cchhHHHHHHHHHHcCCeEEecCCCccccccCCCCC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-----GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGF 96 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-----g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGl 96 (491)
.+...+..++.|+++|+..+-+|... .....+|+ |..|=..-+..|+++|+. + |-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~-----~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGG-----GRETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecc-----cccccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CC
Confidence 46788999999999999999999766 22234443 456888999999999953 1 55
Q ss_pred ccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccc
Q 011211 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (491)
Q Consensus 97 P~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~ 134 (491)
|-++.-+.. ..+..+.+.+..||+.+...|...
T Consensus 96 ~IYfavD~d-----~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 96 PIYFAVDYD-----ATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp EEEEE--TS------B-HH-------HHHHHHHHHGGG
T ss_pred EEEEEeecC-----CCchhhhhHHHHHHHHHHHHHhhC
Confidence 556644322 346677778888888888888763
No 289
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=22.63 E-value=1.2e+02 Score=29.86 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
-+..+.++|+||.+.|..| |..|.=.-+ .+...-+.|.++|+++ .|
T Consensus 137 vetAiaml~dmG~~SiKff-------Pm~Gl~~le---E~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------PMGGLKHLE---ELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------TTTTTHH---HHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------ecCCcccHH---HHHHHHHHHHHcCcee--CC
Confidence 3567899999999999987 333322222 5677778888999987 64
No 290
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=22.38 E-value=2.5e+02 Score=25.56 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=64.3
Q ss_pred Ceeeeccchh-HHHHHHHHHHc-CCeEEecCCCccccccCCCCCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhc
Q 011211 55 GKLVFSGIAD-LVSFLKLCQKL-DLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (491)
Q Consensus 55 G~~dF~g~~d-l~~fl~la~~~-gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~ 132 (491)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +....|+.+..++ ++=+|.-+...... +.
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~---~~I~Pt~L~~l~~~-------i~ 68 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE---NAISPTNLHKLLDT-------IV 68 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC---CccCchhhHHHHHH-------HH
Confidence 4555654433 67777777554 4778888545444444 4556799887542 45566555443332 22
Q ss_pred cccccCCCCeEEEc------ccCccCCcCCcHHHHHHHHHHHHHhcCCceEEEEecC
Q 011211 133 PLLYDIGGPIVMVQ------IENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDG 183 (491)
Q Consensus 133 ~~~~~~gGpII~~Q------iENEyg~~~~~~~y~~~l~~~~~~~~G~~vpl~t~d~ 183 (491)
.+.-.+++.||.++ ++|.+- +--+++..|++.+... + .+.+.+.|.
T Consensus 69 ~fl~~~~~~vViiD~lEYL~l~NgF~---~v~KFL~~LkD~~~~~-~-~~lIl~~~~ 120 (136)
T PF05763_consen 69 RFLKENGNGVVIIDGLEYLILENGFE---SVLKFLASLKDYALLN-N-GTLILVVDP 120 (136)
T ss_pred HHHHhCCCcEEEEecHHHHHHHcCHH---HHHHHHHHhHHHeecc-C-CEEEEEECh
Confidence 22222355688887 566653 2457888999888554 3 234444443
No 291
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=22.26 E-value=1.9e+02 Score=29.84 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g 76 (491)
..+.-.+.+++++++|+. |..|+..+.....++ ....++.+.++.|.+.+
T Consensus 153 t~~~~~~ai~~~~~~Gi~-v~~~~i~G~P~~se~----ea~ed~~~ti~~~~~l~ 202 (313)
T TIGR01210 153 TFEDFIRAAELARKYGAG-VKAYLLFKPPFLSEK----EAIADMISSIRKCIPVT 202 (313)
T ss_pred CHHHHHHHHHHHHHcCCc-EEEEEEecCCCCChh----hhHHHHHHHHHHHHhcC
Confidence 356667888999999997 888887775322222 11236667777777765
No 292
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=21.86 E-value=1e+02 Score=24.04 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=8.4
Q ss_pred cEEEEEeCCc
Q 011211 409 DRAQVFISCP 418 (491)
Q Consensus 409 Dra~V~vdg~ 418 (491)
.-|.|||||+
T Consensus 11 ~gA~V~vdg~ 20 (71)
T PF08308_consen 11 SGAEVYVDGK 20 (71)
T ss_pred CCCEEEECCE
Confidence 3478999999
No 293
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.85 E-value=61 Score=33.55 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCEEEEe-----ccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeE
Q 011211 27 EDRLLRAKALGLNTIQTY-----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~y-----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~V 79 (491)
++.+++||++|++.+.-. -..-.+.-.|...++. +..+.++.|++.|+.|
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~---~~l~~i~~a~~~Gi~v 197 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSE---EWLEVMETAHKLGLPT 197 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 567788888888766310 0000111113334444 6688999999999864
No 294
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.82 E-value=1.8e+02 Score=28.94 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecC
Q 011211 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilrp 83 (491)
-+..+.++|+||.+.|..| |..|.=.-+ .+...-+.|.++|++ |.|
T Consensus 137 vetAiaml~dmG~~SiKff-------PM~Gl~~le---E~~avA~aca~~g~~--lEP 182 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFF-------PMGGLKHLE---EYAAVAKACAKHGFY--LEP 182 (236)
T ss_pred HHHHHHHHHHcCCCeeeEe-------ecCCcccHH---HHHHHHHHHHHcCCc--cCC
Confidence 4667899999999999987 333333333 677778888999987 465
No 295
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=21.68 E-value=3.3e+02 Score=29.22 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCC
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGF 96 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGl 96 (491)
++..+.+++.+++.|=+-.+...+ ..+.++++.|+++|+.|.+-|.-+ |+..+..
T Consensus 178 ~~l~~~i~~~~id~ViIa~p~~~~------------~~~~~ll~~~~~~gv~V~~vP~~~---e~~~~~~ 232 (445)
T TIGR03025 178 DDLVELVRAHRVDEVIIALPLSEE------------ARILELLLQLRDLGVDVRLVPDLF---EFLLGRL 232 (445)
T ss_pred HHHHHHHHhCCCCEEEEecCcccH------------HHHHHHHHHHHhcCCEEEEeCchh---hhccCCc
Confidence 444566677888887776554332 267899999999999999998643 4555544
No 296
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.68 E-value=2.9e+02 Score=27.78 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHc-CCeEEecCC
Q 011211 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKL-DLLVMLRPG 84 (491)
Q Consensus 22 p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~-gL~VilrpG 84 (491)
.++.|.+..+.++++|+..|++.+.-.... ..|..--...+.+.++++.+++. ++-|.++.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVK-GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT 162 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CCcccccCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 478999999999999999999975422211 11221111123566777777766 666666643
No 297
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.61 E-value=1.6e+02 Score=29.44 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=50.4
Q ss_pred EeeEEEEEeeCCCCCC---hhhHHHHHHHHHHcCCC----EEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCe-
Q 011211 7 EPFRIIGGDLHYFRIL---PQHWEDRLLRAKALGLN----TIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL- 78 (491)
Q Consensus 7 kp~~~~sG~~Hy~R~p---~~~W~~~l~k~ka~G~N----~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~- 78 (491)
.-++++..+-|.++.+ +..++..-+.+++.++. +|.....+|+-.|.+.....+ ..-+.+-|+.|++.|..
T Consensus 26 ~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~s-v~~~~~~i~~A~~lga~~ 104 (274)
T TIGR00587 26 TAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKS-LDVLDEELKRCELLGIML 104 (274)
T ss_pred CEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHH-HHHHHHHHHHHHHcCCCE
Confidence 4467777766666554 44555444557778775 233333378888777665554 23688889999999995
Q ss_pred EEecCC
Q 011211 79 VMLRPG 84 (491)
Q Consensus 79 VilrpG 84 (491)
|++-||
T Consensus 105 vv~H~G 110 (274)
T TIGR00587 105 YNFHPG 110 (274)
T ss_pred EEECCC
Confidence 667776
No 298
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.59 E-value=2.1e+02 Score=29.86 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=42.3
Q ss_pred ecCEeeEEEEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC
Q 011211 4 KDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (491)
Q Consensus 4 ~dGkp~~~~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g 76 (491)
+.|++++.++|--++ +.-++.++++|++.+.+..|=.+ +.|+ ..|++++.+.|++.|
T Consensus 225 l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f~DH-------h~yt-~~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 225 LKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAFPDH-------HRYT-EQDLEKLEAEAKAAG 281 (326)
T ss_pred ccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeECCCC-------CCCC-HHHHHHHHHhhcccc
Confidence 467888888887666 23456778899999987655444 4454 249999999999998
No 299
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=21.53 E-value=1.9e+02 Score=27.83 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=39.4
Q ss_pred HHHHHHHHhccccccCCCCeEEEcccCccCCcCCcHHHHHHHHHHHHHhcCCceEEEEec
Q 011211 123 WWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTD 182 (491)
Q Consensus 123 ~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~~~~y~~~l~~~~~~~~G~~vpl~t~d 182 (491)
-+.+|+..++.++. .|-+|.++||+=...+.. -..|..+|+++=++ |.-+++|-.+-
T Consensus 25 ~~~~i~~~l~~W~~-~G~~v~giQIDfDa~t~~-L~~Y~~fL~~LR~~-LP~~~~LSIT~ 81 (181)
T PF11340_consen 25 VLARILQLLQRWQA-AGNNVAGIQIDFDAATSR-LPAYAQFLQQLRQR-LPPDYRLSITA 81 (181)
T ss_pred HHHHHHHHHHHHHH-cCCCceEEEEecCccccc-hHHHHHHHHHHHHh-CCCCceEeeEE
Confidence 34567777777663 566999999987666543 45788888887665 47677775543
No 300
>PRK15108 biotin synthase; Provisional
Probab=21.45 E-value=1.2e+02 Score=31.72 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCCCee-------eeccchhHHHHHHHHHHcCCeE
Q 011211 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKL-------VFSGIADLVSFLKLCQKLDLLV 79 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~-------dF~g~~dl~~fl~la~~~gL~V 79 (491)
++.++++|++|++.+... .|..|+.| +|+ +.-+.++.|++.|+.|
T Consensus 136 ~e~l~~LkeAGld~~n~~-----leT~p~~f~~I~~~~~~~---~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHN-----LDTSPEFYGNIITTRTYQ---ERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeec-----cccChHhcCCCCCCCCHH---HHHHHHHHHHHcCCce
No 301
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=21.39 E-value=5.3e+02 Score=25.20 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCCeEEecCCCccccccCCC-CCccccccCCCCeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCe
Q 011211 64 DLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-GFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPI 142 (491)
Q Consensus 64 dl~~fl~la~~~gL~VilrpGPyi~aEw~~G-GlP~WL~~~~~~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpI 142 (491)
.....++.+++.|++|++..|- |..+ ++ . . ..++ +..++|.+.|+..+..+-+
T Consensus 52 ~~~~~i~~l~~kG~KVl~sigg-----~~~~~~~------~----~--~~~~---~~~~~fa~~l~~~v~~ygl------ 105 (255)
T cd06542 52 NKETYIRPLQAKGTKVLLSILG-----NHLGAGF------A----N--NLSD---AAAKAYAKAIVDTVDKYGL------ 105 (255)
T ss_pred HHHHHHHHHhhCCCEEEEEECC-----CCCCCCc------c----c--cCCH---HHHHHHHHHHHHHHHHhCC------
Confidence 5678888899999999998652 2211 11 0 0 1122 4457778888888876543
Q ss_pred EEEcccCccCCcC------CcHHHHHHHHHHHHHhcCC
Q 011211 143 VMVQIENEFGSYG------DDKEYLHHLVTLARAHLGK 174 (491)
Q Consensus 143 I~~QiENEyg~~~------~~~~y~~~l~~~~~~~~G~ 174 (491)
=++.|+=||.... .+..-+..|.+.+|+.+|.
T Consensus 106 DGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~ 143 (255)
T cd06542 106 DGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP 143 (255)
T ss_pred CceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc
Confidence 2467777776542 2444444455555555564
No 302
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=21.35 E-value=1.3e+02 Score=31.05 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=39.6
Q ss_pred EEEeeCCCCCChhhHHHHHHHHHHcCCC-EEEEecc----CCCc-CCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 12 IGGDLHYFRILPQHWEDRLLRAKALGLN-TIQTYVP----WNLH-EPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 12 ~sG~~Hy~R~p~~~W~~~l~k~ka~G~N-~V~~yv~----Wn~h-Ep~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
++.+.++.-+. ++.|+.||++|+| .|.+-+- .-+. --..| ++++ ++.+.+++|+++|+.|.+-
T Consensus 106 i~~esrpd~i~----~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~~---~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 106 VVVESRPEFID----EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STFE---DFIRAAELARKYGAGVKAY 174 (313)
T ss_pred EEEEeCCCcCC----HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCHH---HHHHHHHHHHHcCCcEEEE
Confidence 34445555444 5678889999999 4777532 1111 11222 2444 8889999999999986553
No 303
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.23 E-value=3.1e+02 Score=29.96 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=46.9
Q ss_pred eeCCCCCChhhHHHHHHHHHHcCCCEEEEecc----CCCcCC-----------------------------------CCC
Q 011211 15 DLHYFRILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP-----------------------------------KPG 55 (491)
Q Consensus 15 ~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp-----------------------------------~~G 55 (491)
+=|++ +.+.-++.|+.|....+|..+.++- |.+--+ ..|
T Consensus 15 aR~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g 92 (445)
T cd06569 15 ARNFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSG 92 (445)
T ss_pred cCCCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCC
Confidence 33554 7899999999999999999999973 543110 011
Q ss_pred eeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 56 KLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 56 ~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.|. ..|+..+++.|++.|+.||..
T Consensus 93 ~YT---~~di~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 93 YYS---RADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred ccC---HHHHHHHHHHHHHcCCEEEEc
Confidence 122 349999999999999999975
No 304
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.10 E-value=1.5e+02 Score=29.51 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 28 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
+.++++++.|+..|+++++.+.. ..+.+.++.|++.|+.|.+-
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEE
Confidence 66888899999999998877632 26889999999999987766
No 305
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.90 E-value=1.3e+02 Score=29.78 Aligned_cols=79 Identities=18% Similarity=0.022 Sum_probs=50.3
Q ss_pred HHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCCCeeE
Q 011211 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (491)
Q Consensus 30 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~~~~~ 109 (491)
-.++|++|+..|-+- |..+.-.|.=+ +.-+.+=.+.|-++||+||+|+|- . ..-
T Consensus 79 ~~mlkd~G~~wVIlG-----HSERR~~fgEs-d~~i~~K~~~Al~eGl~ViaCIGE-----~---------------lee 132 (247)
T KOG1643|consen 79 AEMLKDLGAEWVILG-----HSERRHVFGES-DEFIADKTAHALAEGLKVIACIGE-----T---------------LEE 132 (247)
T ss_pred HHHHHhCCCCEEEec-----chhhhhhhCCc-hHHHHHHHHHHHHcCCeEEEEecc-----c---------------HHh
Confidence 468899999888775 66555566444 124555567788999999999872 1 111
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhcccc
Q 011211 110 RSSDRAYLQLVERWWGVLLPKIAPLL 135 (491)
Q Consensus 110 Rs~d~~y~~~~~~~~~~l~~~l~~~~ 135 (491)
|-.. .-++-+.+=+++++..++.+.
T Consensus 133 REaG-~t~dVv~~Ql~aiad~v~~w~ 157 (247)
T KOG1643|consen 133 REAG-KTLDVVFRQLKAIADKVKDWS 157 (247)
T ss_pred hhcC-chHHHHHHHHHHHHHhcCCcc
Confidence 2211 123445555677888888764
No 306
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.89 E-value=7.7e+02 Score=23.83 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccccCCCCCccccccCCC
Q 011211 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKP 105 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aEw~~GGlP~WL~~~~~ 105 (491)
+++.|++++++|+..|++.- ...-..+.. +++++.++++++||.+..- .|+... .
T Consensus 17 l~~~l~~~~~~G~~gvEi~~------~~~~~~~~~---~~~~l~~~l~~~gl~i~~~---------------~~~~~~-~ 71 (274)
T COG1082 17 LEEILRKAAELGFDGVELSP------GDLFPADYK---ELAELKELLADYGLEITSL---------------APFSNN-L 71 (274)
T ss_pred HHHHHHHHHHhCCCeEecCC------cccCCchhh---hHHHHHHHHHHcCcEEEee---------------cccCCC-c
Q ss_pred CeeEecCCHHHHHHHHHHHHHHHHHhccccccCCCCeEEEcccCccCCcCC---------cHHHHHHHHHHHHHhcCCce
Q 011211 106 ALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD---------DKEYLHHLVTLARAHLGKDI 176 (491)
Q Consensus 106 ~~~~Rs~d~~y~~~~~~~~~~l~~~l~~~~~~~gGpII~~QiENEyg~~~~---------~~~y~~~l~~~~~~~~G~~v 176 (491)
+..+++.. ++..+.+++++...+.+ |.++|-++.-.=.+.... -.+++..|.+.+++. |+.+
T Consensus 72 ---~~~~~~~~-~~~~~~~~~~i~~a~~l----g~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l 142 (274)
T COG1082 72 ---LSPDEEER-EEALEELKRAIELAKEL----GAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGL 142 (274)
T ss_pred ---CCCchhhH-HHHHHHHHHHHHHHHHc----CCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCce
Q ss_pred EE
Q 011211 177 IL 178 (491)
Q Consensus 177 pl 178 (491)
-+
T Consensus 143 ~~ 144 (274)
T COG1082 143 AL 144 (274)
T ss_pred EE
No 307
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.84 E-value=1.4e+02 Score=30.15 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=44.1
Q ss_pred EEEeeCCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEe
Q 011211 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (491)
Q Consensus 12 ~sG~~Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vil 81 (491)
-+|.|.|.-..-+...++++.+|++|++-|-+-+. ...|..|.+ -+.++++.|+ ++.|.+
T Consensus 61 R~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L-----~~dg~vD~~---~~~~Li~~a~--~~~vTF 120 (248)
T PRK11572 61 RGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL-----DVDGHVDMP---RMRKIMAAAG--PLAVTF 120 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE-----CCCCCcCHH---HHHHHHHHhc--CCceEE
Confidence 46888898888888999999999999998776533 235666666 6677777773 455444
No 308
>PRK12999 pyruvate carboxylase; Reviewed
Probab=20.71 E-value=1.7e+02 Score=35.99 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCccccc
Q 011211 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (491)
Q Consensus 17 Hy~R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~aE 90 (491)
-|-+.|....++.+++++++|+..++++.+.|.. .++...++.+++.|..+-+. ||.+
T Consensus 620 gy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~------------~~~~~~i~~vk~~g~~~~~~----i~yt 677 (1146)
T PRK12999 620 GYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV------------ENMRVAIDAVRETGKIAEAA----ICYT 677 (1146)
T ss_pred cccCCCchHHHHHHHHHHHcCCCEEEEeccCChH------------HHHHHHHHHHHHcCCeEEEE----EEEE
Confidence 3667788888889999999999999999766653 27999999999999866555 5655
No 309
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=20.56 E-value=1.3e+02 Score=33.18 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcC--------------CeEEecCCCccc
Q 011211 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--------------LLVMLRPGPYIC 88 (491)
Q Consensus 23 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~g--------------L~VilrpGPyi~ 88 (491)
.+.-+=.+-.+++.|.+.+-+||--+..+ . ...+.+.|+.|.+.| +.|..-+|-|||
T Consensus 134 h~vieG~~iaa~avgA~~~~IyIr~ey~~--------~-~~~l~~Ai~ea~~~g~lG~nilg~~~~~~I~V~~g~g~Y~~ 204 (461)
T PLN03132 134 HKLLEGCLIAGVGMRARAAYIYIRGEYVN--------E-RLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYIC 204 (461)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEccCCHH--------H-HHHHHHHHHHHHHcCCccccccCCCCCceEEEEECCCcCcC
Confidence 33444456778999999999998444321 1 115666688887765 556677888999
Q ss_pred ccc
Q 011211 89 AEW 91 (491)
Q Consensus 89 aEw 91 (491)
+|=
T Consensus 205 GeE 207 (461)
T PLN03132 205 GEE 207 (461)
T ss_pred CHH
Confidence 873
No 310
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=20.52 E-value=5.3e+02 Score=28.12 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEecCCCcccc----c-cCCCCCcccc
Q 011211 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA----E-WDLGGFPAWL 100 (491)
Q Consensus 26 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~VilrpGPyi~a----E-w~~GGlP~WL 100 (491)
-++..+.+++.+++.|=+-+++..++ .+.++++.|++.++.|.+-|..+-.. + -..||.|.+-
T Consensus 192 ~~dL~~~v~~~~IdeViIAip~~~~~------------~l~ell~~~~~~~v~V~ivP~l~~~~~~~~~~~~~~~~p~~~ 259 (463)
T PRK10124 192 LQQLVEDAKAGKIHNVYIAMSMCDGA------------RVKKLVRQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVP 259 (463)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcchH------------HHHHHHHHHHHcCCeEEEecchhhccccccchhhcCCeeEEE
Confidence 34555667788888888876664432 78999999999999999998875221 1 1235777776
Q ss_pred ccCCC
Q 011211 101 LAKKP 105 (491)
Q Consensus 101 ~~~~~ 105 (491)
.+..|
T Consensus 260 ~~~~~ 264 (463)
T PRK10124 260 LYDTP 264 (463)
T ss_pred Eeccc
Confidence 65433
No 311
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=20.40 E-value=4.4e+02 Score=26.43 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=44.5
Q ss_pred CEeeEEEEEeeCCCCCC-------------hhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHH
Q 011211 6 GEPFRIIGGDLHYFRIL-------------PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC 72 (491)
Q Consensus 6 Gkp~~~~sG~~Hy~R~p-------------~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la 72 (491)
.-++.++.+++-|.|.. .++.++.+++++++|.|.|=+ -|+.+ +..++++
T Consensus 86 n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I~---------------~~a~~~l 148 (261)
T cd03334 86 NPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSVS---------------RIAQDLL 148 (261)
T ss_pred CCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCccC---------------HHHHHHH
Confidence 34678888999888754 567778899999999998754 34443 4455677
Q ss_pred HHcCCeEEecC
Q 011211 73 QKLDLLVMLRP 83 (491)
Q Consensus 73 ~~~gL~Vilrp 83 (491)
.++|+.++-|+
T Consensus 149 ~k~gI~~v~~v 159 (261)
T cd03334 149 LEAGITLVLNV 159 (261)
T ss_pred HHCCCEEEEec
Confidence 77788777664
No 312
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=20.35 E-value=96 Score=32.00 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=30.5
Q ss_pred eecCEeeEEE--EEeeCCCCCChhh--HHHHHHHHHHcCCCEEEE
Q 011211 3 RKDGEPFRII--GGDLHYFRILPQH--WEDRLLRAKALGLNTIQT 43 (491)
Q Consensus 3 ~~dGkp~~~~--sG~~Hy~R~p~~~--W~~~l~k~ka~G~N~V~~ 43 (491)
.++|+++.++ -|..|+. ++.. .+.-+..||++|+..|=.
T Consensus 43 ~l~g~~v~~l~RhGr~H~y--~p~~i~~rAni~alk~lGv~~ii~ 85 (290)
T PRK07432 43 TLDGTRVAFLARHGRNHTL--LPTELPFRANIYAMKQLGVEYLIS 85 (290)
T ss_pred EECCEEEEEEECCCCCCcc--ChhhcCcHHHHHHHHHcCCCEEEE
Confidence 4789999999 9999976 5555 344588999999987754
No 313
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=20.24 E-value=1.9e+02 Score=31.03 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEecc----CCCcCCCCCeeeec-------cchhHHHHHHHHHHcCCeEEec
Q 011211 27 EDRLLRAKALGLNTIQTYVP----WNLHEPKPGKLVFS-------GIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 27 ~~~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~~dF~-------g~~dl~~fl~la~~~gL~Vilr 82 (491)
...++.+|++|+.+|.++-. +-.+.- .+++-.- .-.|+++++++|++++..+|+-
T Consensus 15 ~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~-aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 15 LRILRACKELGIKTVAVHSTADRDALHVLL-ADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred HHHHHHHHHcCCeEEEEEChhhhccccccc-CCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 45678899999999999752 212211 2222111 1237889999999999998874
No 314
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.19 E-value=1.6e+02 Score=29.92 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHcCCCEEEEeccCCCcCCCCCeeeeccchhHHHHHHHHHHcCCeEEec
Q 011211 32 RAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 32 k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~gL~Vilr 82 (491)
.+++.||+.+.+- -.+ +|.+| . .++|.++++.++++++.+|+.
T Consensus 192 l~~~~gl~~~~~~-~~~-~~~ep---s---~~~l~~l~~~ik~~~v~~If~ 234 (286)
T cd01019 192 FEKRYGLTQAGVF-TID-PEIDP---G---AKRLAKIRKEIKEKGATCVFA 234 (286)
T ss_pred HHHHcCCceeeee-cCC-CCCCC---C---HHHHHHHHHHHHHcCCcEEEe
Confidence 3467788866531 111 11112 1 349999999999999999986
No 315
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.05 E-value=1.9e+02 Score=30.50 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=37.2
Q ss_pred CEeeEEEEEeeCCC---------------------CCChhhHHHHHHHHHHcCCCEEEEeccCCCcCCCCCeeeeccchh
Q 011211 6 GEPFRIIGGDLHYF---------------------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIAD 64 (491)
Q Consensus 6 Gkp~~~~sG~~Hy~---------------------R~p~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~d 64 (491)
+++.++.|.+-||. |+..+.-++.|++.++.|..-+- |.=+.=...-|.+ .|
T Consensus 140 ~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~--vvat~Gtt~~Ga~-----D~ 212 (373)
T PF00282_consen 140 PKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFA--VVATAGTTNTGAI-----DP 212 (373)
T ss_dssp SSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEE--EEEEBS-TTTSBB------S
T ss_pred cccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccccee--eeccCCCcccccc-----cC
Confidence 35677777777874 44445555666666666653321 1111122223333 27
Q ss_pred HHHHHHHHHHcCCeEEec
Q 011211 65 LVSFLKLCQKLDLLVMLR 82 (491)
Q Consensus 65 l~~fl~la~~~gL~Vilr 82 (491)
|.++.++|+++++++.+-
T Consensus 213 l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 213 LEEIADICEKYNIWLHVD 230 (373)
T ss_dssp HHHHHHHHHHCT-EEEEE
T ss_pred HHHHhhhccccceeeeec
Confidence 788888888887776664
Done!