BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011212
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 18/172 (10%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLAGKVEETP+ KD+I + +++ Q + + KE +++ ER++L T
Sbjct: 91 LFLAGKVEETPKKCKDIIKTARSLLNDV---------QFGQFGDDPKEEVMVLERILLQT 141
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNA---LAQVAWNFVNDGLRTSLCLQFKPHHIAAGA 117
+ FDL V HPY+ L++ K+ K +N L Q+AW FVND L T+L LQ++P IA
Sbjct: 142 IKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201
Query: 118 IFLAAKFLKVKLPSDGDKV----WWQEF--DVTPRQLEEVSNQMLELYEQNR 163
++LA + K ++ K WW++F DV LE++ +Q+L+LY Q +
Sbjct: 202 MYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLA KVEE P+ L+ VI V++ +H ++S R E Y QQ + +++ E ++L T
Sbjct: 88 LFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTR----SEAYLQQVQDLVILESIILQT 143
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR-TSLCLQFKPHHIAAGAIF 119
LGF+L + HP+ +V+ + + +++ LAQ ++ + L T+ LQ+ P +A I
Sbjct: 144 LGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 202
Query: 120 LAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLELYEQN 162
LA K+ ++P D K WW+ D VT L+E++++ L++ E+
Sbjct: 203 LACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKT 248
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 9/166 (5%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLA KVEE P+ L+ VI V++ +H ++S R E Y QQ + +++ E ++L T
Sbjct: 88 LFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTR----SEAYLQQVQDLVILESIILQT 143
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIF 119
LGF+L + HP+ +V+ + + +++ LAQ ++ + L T+ LQ+ P +A I
Sbjct: 144 LGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 202
Query: 120 LAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLELYEQN 162
LA K+ ++P D K WW+ D VT L+E+++++L++ E+
Sbjct: 203 LACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHELLQILEKT 248
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLA KVEE P+ L+ VI V++ +H ++S R E Y QQ + +++ E ++L T
Sbjct: 88 LFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTR----SEAYLQQVQDLVILESIILQT 143
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIF 119
LGF+L + HP+ +V+ + + +++ LAQ ++ + L T+ LQ+ P +A I
Sbjct: 144 LGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 202
Query: 120 LAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLELYEQN 162
LA K+ ++P D K WW+ D VT L+E++++ L++ E+
Sbjct: 203 LACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKT 248
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLA KVEE P+ L+ VI V++ +H ++S R E Y QQ + +++ E ++L T
Sbjct: 85 LFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTR----SEAYLQQVQDLVILESIILQT 140
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR-TSLCLQFKPHHIAAGAIF 119
LGF+L + HP+ +V+ + + +++ LAQ ++ + L T+ LQ+ P +A I
Sbjct: 141 LGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 199
Query: 120 LAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLELYEQN 162
LA K+ ++P D K WW+ D VT L+E++++ L++ E+
Sbjct: 200 LACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKT 245
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
pdb|2IVX|B Chain B, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
Length = 257
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLA KVEE R L+ VI V++ +H + P + +Q +EL++L E ++L T
Sbjct: 81 LFLAAKVEEQARKLEHVIKVAHACLHPLE---PLLDTKCDAYLQQTRELVIL-ETIMLQT 136
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIF 119
LGF++ + HP+ +V+ + + +++ LAQ ++ + L T+ CLQ+KP IA I
Sbjct: 137 LGFEITIEHPHTDVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIH 195
Query: 120 LAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLELYEQN 162
LA K+ ++P D K WW+ D VT L+E++++ L++ E+
Sbjct: 196 LACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKT 241
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
+FLA KVE P+ L+ VI V++ +H ++S R E Y QQ + +++ E ++L T
Sbjct: 89 LFLAAKVEGQPKKLEHVIKVAHTCLHPQESLPDTR----SEAYLQQVQDLVILESIILQT 144
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIF 119
LGF+L + HP+ +V+ + + +++ LAQ ++ + L T+ LQ+ P +A I
Sbjct: 145 LGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 203
Query: 120 LAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLELYEQN 162
LA K+ ++P D K WW+ D VT L+E+++++L++ E+
Sbjct: 204 LACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHELLQILEKT 249
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC
Length = 285
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 23/167 (13%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKEL------ILLGE 54
+FLA KVEE +VS + + A + + + Y KE IL E
Sbjct: 93 VFLASKVEEFG-------VVS----NTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECE 141
Query: 55 RVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIA 114
+L + L V+HPY+PL++ ++ ++ L +AW VND RT LCL + P IA
Sbjct: 142 FYLLELMDCCLIVYHPYRPLLQYVQDMG-QEDMLLPLAWRIVNDTYRTDLCLLYPPFMIA 200
Query: 115 AGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQ 161
+ +A V D + W+ E V ++ E+ +L+LYEQ
Sbjct: 201 LACLHVAC----VVQQKDARQ-WFAELSVDMEKILEIIRVILKLYEQ 242
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C
Length = 235
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKE-VYEQQKELILLGERVVLA 59
++L+ KVEE P ++ I ++ + +++ + + E + E+I +
Sbjct: 79 IYLSCKVEECPVHIRT-------ICNEANDLWSLKVKLSRSNISEIEFEII--------S 123
Query: 60 TLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIF 119
L L VHHPY L +A + Q L + AW+ VND +SLCL PH +A A+
Sbjct: 124 VLDAFLIVHHPYTSLEQAFHDGIINQKQL-EFAWSIVNDSYASSLCLMAHPHQLAYAALL 182
Query: 120 LAA 122
++
Sbjct: 183 ISC 185
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 44 EQQKELILLGERVVLATLGFDLNVHHPYKP----LVEAIKKFKVAQN--ALAQVAWNFVN 97
E+ E IL E +++ L F L VH+PY+P L++ ++ + +N L + A +F+N
Sbjct: 147 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLN 206
Query: 98 DGLRTSLCLQFKPHHIAAGAIFLAA 122
T L + P IA AI +A
Sbjct: 207 RIALTDAYLLYTPSQIALTAILSSA 231
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 44 EQQKELILLGERVVLATLGFDLNVHHPYKP----LVEAIKKFKVAQN--ALAQVAWNFVN 97
E+ E IL E +++ L F L VH+PY+P L++ ++ + +N L + A +F+N
Sbjct: 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLN 196
Query: 98 DGLRTSLCLQFKPHHIAAGAIFLAA 122
T L + P IA AI +A
Sbjct: 197 RIALTDAYLLYTPSQIALTAILSSA 221
>pdb|4GF5|A Chain A, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|C Chain C, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|E Chain E, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|F Chain F, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|H Chain H, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|B Chain B, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|D Chain D, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|G Chain G, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|I Chain I, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|J Chain J, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|K Chain K, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|L Chain L, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|M Chain M, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|N Chain N, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|O Chain O, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|P Chain P, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|Q Chain Q, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|R Chain R, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|S Chain S, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|T Chain T, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
Length = 257
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 57 VLATLGFDLNVHHPYKPLVEAIKKFK-----VAQNALAQVAWNFVNDGLRTSLCLQFKPH 111
V+A FDL+++ P K ++EAI+ + VA + L W N +R L L P
Sbjct: 182 VIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLGLDHAPL 241
Query: 112 HIAAG 116
+ G
Sbjct: 242 RLLPG 246
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 74 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG 133
LVE +++K+ QN +A N+++ L + L+ K + A+ LA+KF ++ P
Sbjct: 51 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 109
Query: 134 DKVWWQEFDVTPRQLEEVSNQMLEL 158
+ V+ + T +Q+ + + +L++
Sbjct: 110 EFVYITDDTYTKKQVLRMEHLVLKV 134
>pdb|3TOS|A Chain A, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|B Chain B, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|C Chain C, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|D Chain D, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|E Chain E, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|F Chain F, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|G Chain G, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|H Chain H, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|I Chain I, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
pdb|3TOS|J Chain J, Crystal Structure Of Cals11, Calicheamicin
Methyltransferase
Length = 257
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 57 VLATLGFDLNVHHPYKPLVEAIKKFK-----VAQNALAQVAWNFVNDGLRTSLCLQFKPH 111
V+A FDL+++ P K ++EAI+ + VA + L W N R L L P
Sbjct: 182 VIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAXRKVLGLDHAPL 241
Query: 112 HIAAG 116
+ G
Sbjct: 242 RLLPG 246
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 74 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG 133
LVE +++K+ QN +A N+++ L + L+ K + A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 134 DKVWWQEFDVTPRQLEEVSNQMLEL 158
+ V+ + T +Q+ + + +L++
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKV 131
>pdb|3S7Q|A Chain A, Crystal Structure Of A Monomeric Infrared Fluorescent
Deinococcus Radiodurans Bacteriophytochrome Chromophore
Binding Domain
Length = 343
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 4 AGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGE---RVVLAT 60
AG + T + +++I+ +E DST P +R E L L E + V
Sbjct: 122 AGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMSALESAPNLRALAEVATQTVREL 181
Query: 61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 120
GFD + +K A +A +V +GL L +F HI A A L
Sbjct: 182 TGFD------------RVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARAL 229
Query: 121 AAKFLKVKLPSD 132
+ L ++L +D
Sbjct: 230 YTRHL-LRLTAD 240
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 74 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG 133
LVE +++K+ QN +A N+++ L + L+ K + A+ LA+KF ++ P
Sbjct: 46 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 104
Query: 134 DKVWWQEFDVTPRQLEEVSNQMLEL 158
+ V+ + T +Q+ + + +L++
Sbjct: 105 EFVYITDDTYTKKQVLRMEHLVLKV 129
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 74 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG 133
LVE +++K+ QN +A N+++ L + L+ K + A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 134 DKVWWQEFDVTPRQLEEVSNQMLEL 158
+ V+ + T +Q+ + + +L++
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKV 131
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 74 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG 133
LVE +++K+ QN +A N+++ L + L+ K + A+ LA+KF ++ P
Sbjct: 47 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 105
Query: 134 DKVWWQEFDVTPRQLEEVSNQMLEL 158
+ V+ + T +Q+ + + +L++
Sbjct: 106 EFVYITDDTYTKKQVLRMEHLVLKV 130
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 74 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG 133
LVE +++K+ QN +A N+++ L + L+ K + A+ LA+KF ++ P
Sbjct: 42 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 100
Query: 134 DKVWWQEFDVTPRQLEEVSNQMLEL 158
+ V+ + T +Q+ + + +L++
Sbjct: 101 EFVYITDDTYTKKQVLRMEHLVLKV 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,515,355
Number of Sequences: 62578
Number of extensions: 580389
Number of successful extensions: 1041
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 43
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)