Query 011214
Match_columns 491
No_of_seqs 171 out of 1534
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 22:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03065 isocitrate dehydrogen 100.0 3E-124 6E-129 984.0 44.1 470 20-491 13-483 (483)
2 PTZ00435 isocitrate dehydrogen 100.0 7E-111 2E-115 872.7 41.9 407 80-486 4-411 (413)
3 TIGR00127 nadp_idh_euk isocitr 100.0 8E-111 2E-115 871.5 40.6 406 80-486 1-408 (409)
4 PRK08299 isocitrate dehydrogen 100.0 8E-109 2E-113 855.8 40.9 400 80-485 2-402 (402)
5 PLN00096 isocitrate dehydrogen 100.0 7E-108 2E-112 841.1 34.6 379 89-481 2-393 (393)
6 KOG1526 NADP-dependent isocitr 100.0 7E-107 2E-111 801.0 29.8 408 79-487 12-419 (422)
7 COG0473 LeuB Isocitrate/isopro 100.0 1E-105 2E-110 811.2 31.4 337 84-483 2-347 (348)
8 PLN00103 isocitrate dehydrogen 100.0 5E-102 1E-106 806.9 39.7 380 79-485 3-410 (410)
9 PLN00118 isocitrate dehydrogen 100.0 9E-102 2E-106 797.9 34.8 326 86-481 42-372 (372)
10 PRK08997 isocitrate dehydrogen 100.0 2E-101 4E-106 787.7 35.7 329 84-481 1-334 (334)
11 PRK14025 multifunctional 3-iso 100.0 2E-100 4E-105 779.5 34.6 321 86-481 2-330 (330)
12 PRK08194 tartrate dehydrogenas 100.0 3E-100 7E-105 784.0 34.8 335 86-482 4-350 (352)
13 PLN02329 3-isopropylmalate deh 100.0 1.1E-99 2E-104 789.2 33.9 345 84-487 45-407 (409)
14 TIGR02089 TTC tartrate dehydro 100.0 2.6E-99 6E-104 777.8 34.3 335 86-481 4-352 (352)
15 PRK09222 isocitrate dehydrogen 100.0 6.3E-99 1E-103 795.8 35.5 337 85-486 4-346 (482)
16 PRK06451 isocitrate dehydrogen 100.0 9.2E-99 2E-103 785.0 35.4 353 88-481 26-408 (412)
17 TIGR02924 ICDH_alpha isocitrat 100.0 8.6E-99 2E-103 792.4 34.1 333 87-484 2-340 (473)
18 TIGR00175 mito_nad_idh isocitr 100.0 3.8E-98 8E-103 765.2 35.0 324 86-481 4-333 (333)
19 PLN00123 isocitrate dehydrogen 100.0 4.7E-98 1E-102 767.0 35.2 322 85-482 30-360 (360)
20 PRK00772 3-isopropylmalate deh 100.0 5.5E-98 1E-102 769.0 35.2 338 85-483 2-357 (358)
21 TIGR00169 leuB 3-isopropylmala 100.0 7.3E-98 2E-102 766.4 34.8 334 87-481 1-349 (349)
22 PRK07006 isocitrate dehydrogen 100.0 1E-97 2E-102 777.8 35.3 358 88-481 22-409 (409)
23 TIGR00183 prok_nadp_idh isocit 100.0 1.5E-97 3E-102 779.1 35.2 358 88-481 29-416 (416)
24 PRK03437 3-isopropylmalate deh 100.0 3.8E-97 8E-102 759.3 33.8 329 86-481 5-344 (344)
25 TIGR02088 LEU3_arch isopropylm 100.0 1.5E-96 3E-101 749.7 34.2 318 88-478 1-322 (322)
26 KOG0785 Isocitrate dehydrogena 100.0 9.5E-97 2E-101 730.6 22.9 325 86-481 36-365 (365)
27 PRK07362 isocitrate dehydrogen 100.0 2.7E-94 5.8E-99 751.5 33.0 358 88-480 31-473 (474)
28 PF00180 Iso_dh: Isocitrate/is 100.0 1.3E-93 2.9E-98 737.0 26.4 330 87-477 1-348 (348)
29 COG0538 Icd Isocitrate dehydro 100.0 9.9E-91 2.1E-95 704.8 32.4 363 88-482 21-407 (407)
30 KOG0784 Isocitrate dehydrogena 100.0 9.7E-84 2.1E-88 644.9 24.9 330 80-482 37-373 (375)
31 KOG0786 3-isopropylmalate dehy 100.0 5.7E-76 1.2E-80 570.3 21.2 338 85-485 4-362 (363)
32 PF03971 IDH: Monomeric isocit 97.7 0.002 4.3E-08 70.9 17.2 221 212-448 411-641 (735)
33 TIGR00178 monomer_idh isocitra 97.3 0.0042 9E-08 68.5 14.8 182 252-448 452-645 (741)
34 COG2838 Icd Monomeric isocitra 96.3 0.065 1.4E-06 58.3 13.7 183 252-448 454-647 (744)
35 TIGR00127 nadp_idh_euk isocitr 88.7 0.21 4.6E-06 53.7 1.6 21 203-223 140-161 (409)
36 PF04166 PdxA: Pyridoxal phosp 88.6 0.31 6.6E-06 50.5 2.6 135 260-414 151-295 (298)
37 PRK03371 pdxA 4-hydroxythreoni 86.9 0.44 9.5E-06 49.9 2.6 136 260-416 177-322 (326)
38 PRK00232 pdxA 4-hydroxythreoni 86.5 0.47 1E-05 49.8 2.5 138 260-417 178-324 (332)
39 PRK03743 pdxA 4-hydroxythreoni 85.8 0.53 1.1E-05 49.5 2.5 140 260-419 178-326 (332)
40 PRK01909 pdxA 4-hydroxythreoni 85.7 0.54 1.2E-05 49.4 2.5 138 260-418 173-321 (329)
41 PRK02746 pdxA 4-hydroxythreoni 85.0 0.61 1.3E-05 49.2 2.5 142 260-417 180-337 (345)
42 PRK05312 pdxA 4-hydroxythreoni 85.0 0.61 1.3E-05 49.1 2.5 138 260-418 182-330 (336)
43 TIGR00557 pdxA 4-hydroxythreon 84.6 0.66 1.4E-05 48.5 2.6 136 260-416 170-316 (320)
44 COG1995 PdxA Pyridoxal phospha 82.9 1.1 2.5E-05 46.8 3.4 45 365-416 277-322 (332)
45 PLN00103 isocitrate dehydrogen 82.8 0.81 1.7E-05 49.4 2.4 9 405-413 336-344 (410)
46 PRK03946 pdxA 4-hydroxythreoni 82.1 1 2.2E-05 46.9 2.7 80 325-418 221-302 (307)
47 TIGR00178 monomer_idh isocitra 68.4 17 0.00036 41.3 7.6 117 212-329 177-299 (741)
48 PF03971 IDH: Monomeric isocit 59.3 14 0.0003 41.8 5.0 131 196-328 155-294 (735)
49 PTZ00435 isocitrate dehydrogen 56.0 6.4 0.00014 42.7 1.7 19 203-221 143-162 (413)
50 PLN03065 isocitrate dehydrogen 54.5 13 0.00028 41.1 3.7 13 328-340 346-358 (483)
51 KOG3974 Predicted sugar kinase 47.4 50 0.0011 34.2 6.3 112 263-417 114-246 (306)
52 PRK10569 NAD(P)H-dependent FMN 44.8 96 0.0021 29.8 7.7 84 87-184 2-92 (191)
53 COG0655 WrbA Multimeric flavod 43.5 1.3E+02 0.0028 28.9 8.5 76 94-183 13-100 (207)
54 PRK14481 dihydroxyacetone kina 35.9 1.8E+02 0.0039 30.9 8.6 131 335-485 92-246 (331)
55 TIGR03567 FMN_reduc_SsuE FMN r 34.1 2.1E+02 0.0045 26.6 8.0 83 88-184 2-91 (171)
56 PRK03371 pdxA 4-hydroxythreoni 29.0 43 0.00093 35.3 2.7 22 84-105 1-24 (326)
57 PF03358 FMN_red: NADPH-depend 28.8 2.1E+02 0.0046 25.4 6.9 82 87-184 2-96 (152)
58 TIGR02363 dhaK1 dihydroxyaceto 27.5 3.2E+02 0.0069 29.1 8.7 131 335-485 93-247 (329)
59 TIGR03566 FMN_reduc_MsuE FMN r 27.3 3.5E+02 0.0076 25.1 8.3 82 87-184 1-94 (174)
60 KOG1014 17 beta-hydroxysteroid 26.5 1E+02 0.0022 32.4 4.9 35 271-313 64-98 (312)
61 PF12953 DUF3842: Domain of un 26.2 57 0.0012 30.1 2.6 33 87-124 1-35 (131)
62 COG2838 Icd Monomeric isocitra 23.9 1.2E+02 0.0027 34.0 5.1 115 214-331 181-303 (744)
63 PRK00232 pdxA 4-hydroxythreoni 23.7 65 0.0014 34.1 2.9 22 84-105 3-26 (332)
64 PRK11468 dihydroxyacetone kina 23.5 4.2E+02 0.0092 28.5 8.8 129 335-483 92-244 (356)
65 PRK05312 pdxA 4-hydroxythreoni 21.2 77 0.0017 33.7 2.8 21 85-105 3-25 (336)
66 PRK02746 pdxA 4-hydroxythreoni 21.2 78 0.0017 33.7 2.9 22 84-105 8-31 (345)
67 PF00582 Usp: Universal stress 21.2 1E+02 0.0022 25.5 3.1 26 263-288 12-37 (140)
68 PRK01355 azoreductase; Reviewe 20.5 4.1E+02 0.0089 25.3 7.5 84 87-184 3-103 (199)
No 1
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.6e-124 Score=984.04 Aligned_cols=470 Identities=85% Similarity=1.323 Sum_probs=433.7
Q ss_pred hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhcccchhhhhhhhcccccccceeecccEEEEcCCccHH
Q 011214 20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR 98 (491)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~I~vi~GDgIGp 98 (491)
..+...|+++++++..||.++..+.+ +.|++.+ .+..........+...+.+++..+..||+|++||++||||||||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r 90 (483)
T PLN03065 13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR 90 (483)
T ss_pred chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence 33456788888999999999988866 4555543 34433444444455566666665568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhccccCCCCccHHHH
Q 011214 99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR 178 (491)
Q Consensus 99 eI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~l~~~~~Spn~~LR 178 (491)
+||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||++++++||++|++|+|||++||
T Consensus 91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR 170 (483)
T PLN03065 91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR 170 (483)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCceeccccccCCceEEE
Q 011214 179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258 (491)
Q Consensus 179 ~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~ 258 (491)
++||||+|+|||.|+++|+++++|+.||+|+|||+||+|.++|++++++|+.++.|++++|+.+.+.++++|.+++++++
T Consensus 171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~ 250 (483)
T PLN03065 171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA 250 (483)
T ss_pred HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence 99999999999988999999999999999999999999999999999999999999999988888888999988899988
Q ss_pred EeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeEEeeEeHHHHHHHHHhC
Q 011214 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS 338 (491)
Q Consensus 259 ~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~ 338 (491)
+++|+++++||||+||+||++|+++||++||+||||.|||+|+++|+|||+++|+++|.+.+|+|+|+|||+||||||++
T Consensus 251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~ 330 (483)
T PLN03065 251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS 330 (483)
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999878888888889999999999999999999
Q ss_pred CCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHH
Q 011214 339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (491)
Q Consensus 339 P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~ 418 (491)
|++|||||+|||||||||++||++|||||+||+|+|+++++++|||+||||||||++||+||+++|||+|+||||+|||+
T Consensus 331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~ 410 (483)
T PLN03065 331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 410 (483)
T ss_pred CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999866799999999999999999999967999999999999999
Q ss_pred hhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHHHHhhhcCCCCC
Q 011214 419 HRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMV 491 (491)
Q Consensus 419 hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l~~~~~~~~~~ 491 (491)
|+|++|+|+++.++|++||+||.+++++|++|+|||+|.+|.++.++++++|+||+|+|+++|+++|..+.+|
T Consensus 411 hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~~~~~~~~~~ 483 (483)
T PLN03065 411 HRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKRGEPAVV 483 (483)
T ss_pred HhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999987776744456678999999999999999999877765
No 2
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-111 Score=872.72 Aligned_cols=407 Identities=73% Similarity=1.198 Sum_probs=381.5
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.||+|++|+|+|+||+|.+.+|+.++++|+.++++|+|+++|+|.+++++||+++|++++++|+++||+||||++||..+
T Consensus 4 ~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~ 83 (413)
T PTZ00435 4 GKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEA 83 (413)
T ss_pred ccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
++.+++||++|+|||++||+.||||||+|||.+|++|++.++|+.||+++||||||.|.++|++++||++.+..|.+.+|
T Consensus 84 ~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g 163 (413)
T PTZ00435 84 RVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADG 163 (413)
T ss_pred cccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCC
Confidence 66689999999999999999999999999986799999999999999999999999999999999999997777777778
Q ss_pred CCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccC
Q 011214 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~ 319 (491)
+.|.+..+++|..+++++.++|||+++|||+|+||+||++|+++||+|||+||||.+||||+++|+|||+++||++|+++
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~ 243 (413)
T PTZ00435 164 SEPQRVDVFDFKGGGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKA 243 (413)
T ss_pred CcceeeeeeccCCCCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccC
Confidence 88888999999888988888999999999999999999999989999999999999999999999999965799999999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCC
Q 011214 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (491)
Q Consensus 320 ~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaG 399 (491)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+||||||+|++||+|
T Consensus 244 ~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~iaG 323 (413)
T PTZ00435 244 GLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQHQKG 323 (413)
T ss_pred CEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999998862269999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCC-CCCCccccCHHHHHHHHH
Q 011214 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGP-KVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 400 k~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~-~~~~~~~~sT~ef~daV~ 478 (491)
|+++|||+|+|||++|||+|+|++++|+++.++|++|++||.+++++|.+|+|||.+.+|+ +...++.++|+||+|+|+
T Consensus 324 k~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV~ 403 (413)
T PTZ00435 324 KETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDYLNTEEFIDKVA 403 (413)
T ss_pred CCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHHHHHH
Confidence 7549999999999999999999999999999999999999999999999999996433252 234456799999999999
Q ss_pred HHHHhhhc
Q 011214 479 TNLGAKLR 486 (491)
Q Consensus 479 ~~l~~~~~ 486 (491)
++|.++|.
T Consensus 404 ~~L~~~~~ 411 (413)
T PTZ00435 404 EKLKKKLG 411 (413)
T ss_pred HHHHHHhc
Confidence 99988775
No 3
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=8.1e-111 Score=871.51 Aligned_cols=406 Identities=72% Similarity=1.186 Sum_probs=371.9
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.||||.+|+++|+||+|.+.+|+.++++|+.++++|+|+++|+|.+++++||+++|++++++|+++|++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCc-eeeEecCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGK-LKMVFDPED 238 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~-~~l~~~~~~ 238 (491)
++.+++|+++|+|||++||+.||||||+|||.++++++..++|+.||+|+||||||.|.++|++++|||+ +++|.+. +
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~-e 159 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPK-D 159 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECC-C
Confidence 7778889999999999999999999999998778999888899999999999999999999999999999 6666655 3
Q ss_pred CCCCceecccccc-CCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccc
Q 011214 239 GTGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (491)
Q Consensus 239 g~~~~~~~~~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~ 317 (491)
++.+++.++.++. +++++++++|||+++|||+|+||+||++|+++||+|||+||||.+||+|+++|+|||+++||++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~ 239 (409)
T TIGR00127 160 GTQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFE 239 (409)
T ss_pred CCcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCccccc
Confidence 4444444444443 356777888999999999999999999999999999999999999999999999997569999999
Q ss_pred cCCeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhcc
Q 011214 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (491)
Q Consensus 318 ~~~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~i 397 (491)
+++|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++++|||||+||||||+|++||
T Consensus 240 ~~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~i 319 (409)
T TIGR00127 240 ALGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQ 319 (409)
T ss_pred CCCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred CCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHH
Q 011214 398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (491)
Q Consensus 398 aGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV 477 (491)
|||+.+|||+|+|||++|||+|+|+++.|+.+.++|++|++||.+++++|.+|+||+...+|.....++.++|+||+|+|
T Consensus 320 aGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV 399 (409)
T TIGR00127 320 KGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILGGSPVERSAYLNTEEFIDAV 399 (409)
T ss_pred CCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccCCCcccCCCCcCHHHHHHHH
Confidence 99744999999999999999999999888889999999999999999999999999211116323344569999999999
Q ss_pred HHHHHhhhc
Q 011214 478 ATNLGAKLR 486 (491)
Q Consensus 478 ~~~l~~~~~ 486 (491)
+++|+++|+
T Consensus 400 ~~~L~~~~~ 408 (409)
T TIGR00127 400 EERLKKKIA 408 (409)
T ss_pred HHHHHHHhc
Confidence 999988775
No 4
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.2e-109 Score=855.83 Aligned_cols=400 Identities=69% Similarity=1.163 Sum_probs=358.8
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.||||++||++|||||||||||+++++++.+++++|+|+++++|.+++++||+++|++++++|+++|++||||++||...
T Consensus 2 ~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~ 81 (402)
T PRK08299 2 AKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEA 81 (402)
T ss_pred CccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
++.++++++.|+|||++||++||||+|+|||+++++|...++++.|++|+||||||+|+++|++++|++...+.|....|
T Consensus 82 ~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 82 RVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred cccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 33333555568999999999999999999986688665555566789999999999999999999998888887766554
Q ss_pred CCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccC
Q 011214 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~ 319 (491)
.+.+.++.++...+++...++||+++|||+|+||+||++|+++||+|||+||||.+||||+++|+|||+++||+.|.+.
T Consensus 162 -~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 -EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred -ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 3444455554445665556799999999999999999999989999999999999999999999999955899999999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCC
Q 011214 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (491)
Q Consensus 320 ~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaG 399 (491)
+|+++|++||++|||||++|++|||||+|||||||||++|+++||||++||+|+|+++.+.||||+||||||||++||||
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~IaG 320 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKG 320 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999998864369999999999999999999
Q ss_pred CCCc-cCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHH
Q 011214 400 QETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 400 k~~i-ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~ 478 (491)
|| + |||+|+|||++|||+|||++++||.+.++|++|++||.+++++|.+|+|||...+|. ...++|+||+|+|+
T Consensus 321 k~-~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~~----~g~~tT~e~~daIi 395 (402)
T PRK08299 321 EE-TSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPD----QKWLTTEEFLDAID 395 (402)
T ss_pred CC-CccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCCC----CCCcCHHHHHHHHH
Confidence 99 7 999999999999999999999999999999999999999999999999995211121 02589999999999
Q ss_pred HHHHhhh
Q 011214 479 TNLGAKL 485 (491)
Q Consensus 479 ~~l~~~~ 485 (491)
++|.++|
T Consensus 396 ~~l~~~~ 402 (402)
T PRK08299 396 ENLEKAL 402 (402)
T ss_pred HHHHhhC
Confidence 9998765
No 5
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.1e-108 Score=841.09 Aligned_cols=379 Identities=34% Similarity=0.487 Sum_probs=359.6
Q ss_pred EEEcCCccHHHHHHHHHHHHhcCCCcee-EEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhccc
Q 011214 89 VEMDGDEMTRIIWQMIKDKLIFPYLDLD-IKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (491)
Q Consensus 89 ~vi~GDgIGpeI~~~~~~~l~~~~~~i~-~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~l~ 167 (491)
|.|+||+|++.||+.++++|+.|+++++ |+|||||.++||+|+++++.|+++++++++|++|||++||++.+|+||+||
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 7899999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHHHhhcCc-eEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCceec
Q 011214 168 SMWRSPNGTIRNILNG-TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELD 246 (491)
Q Consensus 168 ~~~~Spn~~LR~~LdL-yanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (491)
++|+|||++||+.||+ +++++||.|+++| ++|++||+|.||+.+|+|.. |+.+.++|+.+|.|+|++|++|.+++
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999878775 79999999999999999999 99999999999999999999999999
Q ss_pred ccccc-CCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhcccccc-----CC
Q 011214 247 VYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE-----HS 320 (491)
Q Consensus 247 ~~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~-----~~ 320 (491)
+++|+ ++||++.|+||.++++||||+||+||++|+++||++||+||||+++|||+ +|+||++++|+++|++ ++
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 99998 68999999999999999999999999999999999999999999999998 9999997799988988 67
Q ss_pred eEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCC--Cc-ceeeeccccccccchhhc
Q 011214 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD--GK-TLEAEAAHGTVTRHFRLH 396 (491)
Q Consensus 321 I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d--~~-~~~fEp~HGSAPd~~~~~ 396 (491)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||||+++|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 7899999999999999999999 9999999999999999999999999999999955 53 379999999999999999
Q ss_pred cCCCCCccCchhHHHHHHHHHHhhcccCcch-hHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHH
Q 011214 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNE-RLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFID 475 (491)
Q Consensus 397 iaGk~~iANPiA~IlS~ammL~hlg~ld~~~-~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~d 475 (491)
++||+++|||+|+||||+|||+|++++++++ ++.++|++||+||.+++++|.+|+||+ |. ..++|+||+|
T Consensus 317 ~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~----g~-----~~~tT~ef~d 387 (393)
T PLN00096 317 LRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLC----GA-----GGLTTEQFID 387 (393)
T ss_pred hcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCC----CC-----CCCCHHHHHH
Confidence 9999669999999999999999999887764 789999999999999999999999996 41 1589999999
Q ss_pred HHHHHH
Q 011214 476 AVATNL 481 (491)
Q Consensus 476 aV~~~l 481 (491)
+|+++|
T Consensus 388 aI~~~L 393 (393)
T PLN00096 388 AVAEEL 393 (393)
T ss_pred HHHHhC
Confidence 999875
No 6
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7.2e-107 Score=801.01 Aligned_cols=408 Identities=75% Similarity=1.248 Sum_probs=401.4
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 79 ~~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
..||+|.+|||.++||+|++.||+.++++|+.|+++++++|||+|.+++|+|+++++.|+.+++++++|++|||++||++
T Consensus 12 ~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDE 91 (422)
T KOG1526|consen 12 MSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDE 91 (422)
T ss_pred hceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
.+++||+||+||+|||++||++|+++++++||.|+++|.++|+|.+||+|.||+.+|+|.++|+++.++|+++|.|.+.+
T Consensus 92 aRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~d 171 (422)
T KOG1526|consen 92 ARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSD 171 (422)
T ss_pred HHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhcccccc
Q 011214 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (491)
Q Consensus 239 g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~ 318 (491)
|..+.+++|++|+++|++..|++|.++++.+|+.+|+||.++++++++.+|++|||+|||.|++||+||++++|+.+|++
T Consensus 172 g~~~~~~~V~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~ 251 (422)
T KOG1526|consen 172 GTQKVTLKVYDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEA 251 (422)
T ss_pred CCcceeEEEEecCCCceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHh
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccC
Q 011214 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (491)
Q Consensus 319 ~~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~ia 398 (491)
.+|||||++||+|++|++|+.++|||+|+||+||++||++||.+||||||+|..+.|||++++.|++|||+++|||+|++
T Consensus 252 ~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqk 331 (422)
T KOG1526|consen 252 LGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQK 331 (422)
T ss_pred hcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHH
Q 011214 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 399 Gk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~ 478 (491)
|++|++||||+|+||+++|.|+|+||+|++|..|++.||+||.++++.|+||+||++|++| +++|..+++|+||.|+|.
T Consensus 332 G~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g-~~~r~~y~~T~eFidav~ 410 (422)
T KOG1526|consen 332 GQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHG-KVERSDYLNTEEFIDAVA 410 (422)
T ss_pred CCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcC-CccccccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred HHHHhhhcC
Q 011214 479 TNLGAKLRE 487 (491)
Q Consensus 479 ~~l~~~~~~ 487 (491)
++|++.|..
T Consensus 411 ~~L~~~~~~ 419 (422)
T KOG1526|consen 411 SNLKKKLAQ 419 (422)
T ss_pred HHHHHHHhh
Confidence 999988764
No 7
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-105 Score=811.19 Aligned_cols=337 Identities=22% Similarity=0.233 Sum_probs=307.5
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcC---CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 84 ~~~~I~vi~GDgIGpeI~~~~~~~l~~~---~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
|.++|++||||||||||+++++++|.+. +++|+|+++++|++++++||.++|+++++.|+++|++||||+++|.+..
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 4689999999999999999999988654 3899999999999999999999999999999999999999999998764
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC--CCCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~--~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
.+ .+++|.+++|||+||||||+||+ |++|++.+.. .+|+|||||||||+|+|.++....
T Consensus 82 ~~-----~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~------------ 142 (348)
T COG0473 82 LP-----RPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILG------------ 142 (348)
T ss_pred CC-----CcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccC------------
Confidence 22 24678899999999999999997 7899988765 499999999999999998764210
Q ss_pred CCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHhhhcccc
Q 011214 239 GTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (491)
Q Consensus 239 g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f 316 (491)
+..++ +.++|||+++|||+|+|||+|++| ++|||+|||+|||+.+|||||++|+||+ ++||
T Consensus 143 -------------~~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP--- 205 (348)
T COG0473 143 -------------GGEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP--- 205 (348)
T ss_pred -------------CCeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC---
Confidence 11244 458899999999999999999999 6999999999999999999999999999 7999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhh
Q 011214 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (491)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~ 395 (491)
+|+++|+|||+++||||++|++| ||||+|||||||||++|+++|||||+||||+|++....||||+||||||
T Consensus 206 ---dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD---- 278 (348)
T COG0473 206 ---DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD---- 278 (348)
T ss_pred ---CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc----
Confidence 99999999999999999999999 9999999999999999999999999999999995335799999999999
Q ss_pred ccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHc-CCCchhhhhhccCCCCCCccccCHHHHH
Q 011214 396 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVET-GKMTKDLAILVHGPKVSREFYLNTEEFI 474 (491)
Q Consensus 396 ~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~-G~~T~DLg~~~~G~~~~~~~~~sT~ef~ 474 (491)
||||| +|||+|+|||++|||+|+|+. ++|++|++||.++|++ |++|+||| | .++|.||+
T Consensus 279 -IAGkg-iANPiA~IlS~aMML~~~g~~-------~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~~ 338 (348)
T COG0473 279 -IAGKG-IANPIATILSAAMMLRHLGEK-------EAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEVG 338 (348)
T ss_pred -ccCCC-ccChHHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHHH
Confidence 99999 999999999999999999953 4999999999999995 69999998 8 58899999
Q ss_pred HHHHHHHHh
Q 011214 475 DAVATNLGA 483 (491)
Q Consensus 475 daV~~~l~~ 483 (491)
|+|+++|..
T Consensus 339 d~I~~~l~~ 347 (348)
T COG0473 339 DAIAKALAS 347 (348)
T ss_pred HHHHHHHhc
Confidence 999999864
No 8
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.9e-102 Score=806.92 Aligned_cols=380 Identities=77% Similarity=1.260 Sum_probs=327.5
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 79 ~~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
++||||.+|+++|||||||||+|+++++++.+++++|+|+++|+|.++|++||+++|++++++|+++|++||||++||..
T Consensus 3 ~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~ 82 (410)
T PLN00103 3 FEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (410)
T ss_pred cccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC--------------------------CCeEEEecc
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK--------------------------KPICIGRHA 212 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~--------------------------~divIvREn 212 (491)
.++.|.++++.|+|||++||++||||||+|||.+|++|++.+++. +|+||||||
T Consensus 83 ~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivREN 162 (410)
T PLN00103 83 ARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEG 162 (410)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecC
Confidence 444556666779999999999999999999954478884444332 555666777
Q ss_pred cCCcccccceeEcCCCceeeEecCCCCCCCceecccccc-CCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCc
Q 011214 213 FGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNT 291 (491)
Q Consensus 213 tEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaN 291 (491)
|||.| ++.. .++. ..+++...++|+++++||+|+||+||++|+++||++||+|
T Consensus 163 TEg~y---e~~~-----------------------~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaN 216 (410)
T PLN00103 163 KDEKT---ELEV-----------------------YNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNT 216 (410)
T ss_pred CCcee---EEEe-----------------------eccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCC
Confidence 77766 1211 0001 1244444446999999999999999999998999999999
Q ss_pred cccccchHHHHHHHHHHHhhhccccccCCeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCccccccc
Q 011214 292 ILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSV 371 (491)
Q Consensus 292 Ilk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSa 371 (491)
|||.+||+|+++|+||++++|.++|.+++|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+
T Consensus 217 Vlk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSa 296 (410)
T PLN00103 217 ILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSV 296 (410)
T ss_pred CchhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhcc
Confidence 99999999999999999654444444558999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeeccccccccchhhc-cCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCc
Q 011214 372 LLSSDGKTLEAEAAHGTVTRHFRLH-QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMT 450 (491)
Q Consensus 372 nig~d~~~~~fEp~HGSAPd~~~~~-iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T 450 (491)
|+|+++..+||||+||||||||+.| ||||| +|||+|+|||++|||+|++++++|..+.++|++|++||.+++++|.+|
T Consensus 297 nig~~~~~~~FEp~HGSApd~~~~~diaGk~-iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~~T 375 (410)
T PLN00103 297 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGET-STNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMT 375 (410)
T ss_pred ccCCCCCcEEEeCCCCcCcccchhhhhcCCC-ccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCCCC
Confidence 9998864468999999999977764 89999 999999999999999999999888889999999999999999999999
Q ss_pred hhhhhhccCCCCCCccccCHHHHHHHHHHHHHhhh
Q 011214 451 KDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKL 485 (491)
Q Consensus 451 ~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l~~~~ 485 (491)
+||+...+|.++..++.++|+||+|+|+++|++.+
T Consensus 376 ~Dl~~~~~gg~~~~~~~~~T~e~~daV~~~l~~~~ 410 (410)
T PLN00103 376 KDLALLIHGPKVSRDQYLNTEEFIDAVAEELKARL 410 (410)
T ss_pred cccccccCCCcccCCCCcCHHHHHHHHHHHHHhhC
Confidence 99952222333334456899999999999997653
No 9
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=9.4e-102 Score=797.90 Aligned_cols=326 Identities=24% Similarity=0.270 Sum_probs=303.2
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
++|++||||||||||+++++++|...+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 42 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~------ 115 (372)
T PLN00118 42 ITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK------ 115 (372)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc------
Confidence 68999999999999999999999877899999999999999999999999999999999999999999999532
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCce
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~ 244 (491)
+++|+|++||++||||+|+||| |.+||+.+++ ++|+|||||||||+|+|.++...
T Consensus 116 ---~~~s~~~~LRk~ldLyaNvRPv--r~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~------------------- 171 (372)
T PLN00118 116 ---GHRSLNLTLRKELGLYANVRPC--YSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVV------------------- 171 (372)
T ss_pred ---cccCchHHHHHHcCCeeeeccc--ccCCCccCcccCceEEEEEecCCCcccceeeecc-------------------
Confidence 4788999999999999999997 7889987765 49999999999999999876431
Q ss_pred eccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeE
Q 011214 245 LDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (491)
Q Consensus 245 ~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~ 322 (491)
++++. ..+|||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+||+ ++|| +|+
T Consensus 172 --------~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~eyP------dI~ 236 (372)
T PLN00118 172 --------RGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKYP------EIV 236 (372)
T ss_pred --------CCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhCC------Cce
Confidence 23443 477999999999999999999997 679999999999999999999999999 6999 999
Q ss_pred EeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCC
Q 011214 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (491)
Q Consensus 323 ~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~ 401 (491)
++|++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ..||||+|||||| |||||
T Consensus 237 ~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPd-----IAGk~ 310 (372)
T PLN00118 237 YEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPD-----IAGKN 310 (372)
T ss_pred EEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhh-----hCCCC
Confidence 99999999999999999999 99999999999999999999999999999999986 4799999999999 99999
Q ss_pred CccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCccccCHHHHHHHHHHH
Q 011214 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (491)
Q Consensus 402 ~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~ 480 (491)
+|||+|+|||++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+||+|+|+++
T Consensus 311 -iANP~A~IlS~amML~~lG-------~~~~A~~I~~Av~~~l~~G~~~T~DlG----G-------~~sT~e~~dav~~~ 371 (372)
T PLN00118 311 -LANPTALLLSAVMMLRHLK-------LNEQAEQIHNAILNTIAEGKYRTADLG----G-------SSTTTDFTKAICDH 371 (372)
T ss_pred -CcCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhh
Confidence 9999999999999999999 4689999999999999999 6999998 8 59999999999987
Q ss_pred H
Q 011214 481 L 481 (491)
Q Consensus 481 l 481 (491)
|
T Consensus 372 l 372 (372)
T PLN00118 372 L 372 (372)
T ss_pred C
Confidence 5
No 10
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=2e-101 Score=787.68 Aligned_cols=329 Identities=21% Similarity=0.258 Sum_probs=302.8
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhh
Q 011214 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (491)
Q Consensus 84 ~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e 163 (491)
|+++|++|||||||||||++++++|.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+.
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---- 76 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---- 76 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc----
Confidence 5678999999999999999999999777889999999999999999999999999999999999999999999643
Q ss_pred hccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCC
Q 011214 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (491)
Q Consensus 164 ~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~ 242 (491)
.++|+++.||++||||+|+||| |++||+.+++ ++|+|||||||||+|+|.++.... +
T Consensus 77 -----~~~~~~~~LR~~ldlyanvRP~--k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~------------~--- 134 (334)
T PRK08997 77 -----GFTSINVTLRKKFDLYANVRPV--LSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSE------------D--- 134 (334)
T ss_pred -----CccchHHHHHHHcCCeEEEeec--ccCCCCCCccCCcCEEEEEeccCceecCccceecC------------C---
Confidence 3578899999999999999997 7889987765 499999999999999998753210 0
Q ss_pred ceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCC
Q 011214 243 VELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (491)
Q Consensus 243 ~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~ 320 (491)
..++ ..++|||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+||+ ++|| +
T Consensus 135 ----------~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yP------~ 197 (334)
T PRK08997 135 ----------GETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRYP------D 197 (334)
T ss_pred ----------CceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhCC------C
Confidence 1133 4578999999999999999999996 679999999999999999999999999 5999 9
Q ss_pred eEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCC
Q 011214 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (491)
Q Consensus 321 I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaG 399 (491)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. .+|||+|||||| |||
T Consensus 198 V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~HGSAPd-----IAG 270 (334)
T PRK08997 198 IEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRDA--AIFEAVHGSAPD-----IAG 270 (334)
T ss_pred eEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCCc--eEEECCCCchhh-----hCC
Confidence 9999999999999999999999 99999999999999999999999999999999875 689999999999 999
Q ss_pred CCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCC-CchhhhhhccCCCCCCccccCHHHHHHHHH
Q 011214 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 400 k~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~-~T~DLg~~~~G~~~~~~~~~sT~ef~daV~ 478 (491)
|| +|||+|+|||++|||+|+| +.++|++|++||.+++++|+ +|+||| | .++|+||+|+|+
T Consensus 271 k~-iANP~a~IlS~amML~~lG-------~~~~A~~i~~AV~~vl~~G~~~T~DlG----G-------~a~T~e~~~av~ 331 (334)
T PRK08997 271 KN-LANPTSVILAAIQMLEYLG-------MPDKAERIRKAIVAVIEAGDRTTRDLG----G-------THGTTDFTQAVI 331 (334)
T ss_pred CC-ccCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHH
Confidence 99 9999999999999999999 46799999999999999995 799998 8 599999999999
Q ss_pred HHH
Q 011214 479 TNL 481 (491)
Q Consensus 479 ~~l 481 (491)
++|
T Consensus 332 ~~l 334 (334)
T PRK08997 332 DRL 334 (334)
T ss_pred hhC
Confidence 875
No 11
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-100 Score=779.50 Aligned_cols=321 Identities=23% Similarity=0.248 Sum_probs=298.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
++|++||||||||||+++++++|...+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 479999999999999999999998778999999999999999999999999999999999999999999983
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCce
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~ 244 (491)
.|.++.||++||||||+||| |++||+.++. ++|+|||||||||+|+|.++...
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~--r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~------------------- 127 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPV--KSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIA------------------- 127 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEe--ecCCCCCCccCCcCEEEEEECCCceecCcccccC-------------------
Confidence 24589999999999999997 7889987654 59999999999999999876421
Q ss_pred eccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhC----C-CCEEEEeCCccccccchHHHHHHHHHHHhhhcccccc
Q 011214 245 LDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK----K-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (491)
Q Consensus 245 ~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r----~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~ 318 (491)
++++. ..++||++++||+|+||+||++| + ++||++||+||||.+||||+++|+||+ ++||
T Consensus 128 --------~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~yp----- 193 (330)
T PRK14025 128 --------DGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEYP----- 193 (330)
T ss_pred --------CCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhCC-----
Confidence 23343 47899999999999999999999 4 579999999999999999999999999 6999
Q ss_pred CCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhcc
Q 011214 319 HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (491)
Q Consensus 319 ~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~i 397 (491)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. .||||+|||||| |
T Consensus 194 -~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~HGSAPd-----i 265 (330)
T PRK14025 194 -DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDKY--GLFEPVHGSAPD-----I 265 (330)
T ss_pred -CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCCc--ceeEcCCCCchh-----h
Confidence 99999999999999999999999 99999999999999999999999999999999875 589999999999 9
Q ss_pred CCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHH
Q 011214 398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (491)
Q Consensus 398 aGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV 477 (491)
|||| +|||+|+|||++|||+|+|+ .++|++|++||.+++++|++|+||| | .++|+||+|+|
T Consensus 266 AGk~-iANP~a~IlS~ammL~~lG~-------~~~A~~I~~Av~~vl~~g~~T~DlG----G-------~~~T~e~~~av 326 (330)
T PRK14025 266 AGKG-IANPTATILTAVLMLRHLGE-------NEEADKVEKALEEVLALGLTTPDLG----G-------NLSTMEMAEEV 326 (330)
T ss_pred CCCC-CcCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHH
Confidence 9999 99999999999999999994 6799999999999999999999998 8 59999999999
Q ss_pred HHHH
Q 011214 478 ATNL 481 (491)
Q Consensus 478 ~~~l 481 (491)
+++|
T Consensus 327 ~~~~ 330 (330)
T PRK14025 327 AKRV 330 (330)
T ss_pred HHhC
Confidence 9874
No 12
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-100 Score=783.98 Aligned_cols=335 Identities=18% Similarity=0.190 Sum_probs=300.9
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~-----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
++|++||||||||||+++++++|.+. +++++|+++++|.++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 67999999999999999999988532 5899999999999999999999999999999999999999999996421
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCCceeeEecC
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDP 236 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~ 236 (491)
+. ...++++++||++||||||+||| |++|++.++. ++|+|||||||||+|+|.++... +
T Consensus 84 ----~~-~~~~~~~l~LR~~ldLyaNvRP~--k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~-~--------- 146 (352)
T PRK08194 84 ----DH-ISLWGLLIKIRREFEQVINIRPA--KQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIH-R--------- 146 (352)
T ss_pred ----CC-CCchhhHHHHHHHcCCEEEEEee--ecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCcccc-C---------
Confidence 00 11234599999999999999998 6888877653 59999999999999999864321 0
Q ss_pred CCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccc
Q 011214 237 EDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (491)
Q Consensus 237 ~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~ 315 (491)
| ..+++ ..++|||+++|||+|+||+||++|+++||+|||+|||+.+||||+++|+||+ ++||
T Consensus 147 --g------------~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~yp-- 209 (352)
T PRK08194 147 --G------------EDEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDYP-- 209 (352)
T ss_pred --C------------ccceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhCC--
Confidence 0 01233 4588999999999999999999998899999999999999999999999999 6999
Q ss_pred cccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCc-ceeeeccccccccch
Q 011214 316 FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHF 393 (491)
Q Consensus 316 f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~-~~~fEp~HGSAPd~~ 393 (491)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++. ..||||+||||||
T Consensus 210 ----~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPd-- 283 (352)
T PRK08194 210 ----EIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD-- 283 (352)
T ss_pred ----CceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchh--
Confidence 99999999999999999999999 999999999999999999999999999999997642 3699999999999
Q ss_pred hhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHH
Q 011214 394 RLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEF 473 (491)
Q Consensus 394 ~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef 473 (491)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|.+|+||| | .++|+||
T Consensus 284 ---iAGk~-iANP~a~IlS~amML~~lg-------~~~~A~~i~~Av~~~l~~g~~T~DlG----G-------~~~T~e~ 341 (352)
T PRK08194 284 ---IAGKG-IANPIGQIWTAKLMLDHFG-------EEELGSHLLDVIEDVTEDGIKTPDIG----G-------RATTDEV 341 (352)
T ss_pred ---hCCCC-cCCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCCcCcCC----C-------CcCHHHH
Confidence 99999 9999999999999999999 46799999999999999999999998 8 5999999
Q ss_pred HHHHHHHHH
Q 011214 474 IDAVATNLG 482 (491)
Q Consensus 474 ~daV~~~l~ 482 (491)
+|+|+++|+
T Consensus 342 ~~ai~~~l~ 350 (352)
T PRK08194 342 TDEIISRLK 350 (352)
T ss_pred HHHHHHHHh
Confidence 999999994
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1.1e-99 Score=789.19 Aligned_cols=345 Identities=18% Similarity=0.174 Sum_probs=304.7
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 84 ~~~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
+.++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4578999999999999999999988532 689999999999999999999999999999999999999999999653
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCC--C------CCCCeEEEecccCCcccccceeEcCCCcee
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~--~------~~~divIvREntEg~Y~g~e~~~~~~~~~~ 231 (491)
... ..+ ...+++++||++||||+|+||| |++|++.. + .++|+|||||||||+|+|.++....
T Consensus 125 ~~~-~~~--~~e~~ll~LRk~ldLyaNvRPv--r~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~----- 194 (409)
T PLN02329 125 KNE-KHL--RPEMALFYLRRDLKVFANLRPA--TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITI----- 194 (409)
T ss_pred CCc-ccc--cccccHHHHHHHcCCeEeeeee--eccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceec-----
Confidence 210 001 0125799999999999999998 67887653 2 2599999999999999998642110
Q ss_pred eEecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHh
Q 011214 232 MVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (491)
Q Consensus 232 l~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~ 310 (491)
.+ .+.+++ ..++|||+++|||+|+||+||++|+++||+|||+|||+ +++||+++|+||+ +
T Consensus 195 ---~~--------------~~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~ 255 (409)
T PLN02329 195 ---NE--------------NGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-S 255 (409)
T ss_pred ---cc--------------CCceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-h
Confidence 00 012344 45889999999999999999999988999999999999 9999999999999 6
Q ss_pred hhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccccc
Q 011214 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (491)
Q Consensus 311 eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSA 389 (491)
+|| +|+++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||
T Consensus 256 eyP------dV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSA 328 (409)
T PLN02329 256 EYP------DVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSA 328 (409)
T ss_pred hCC------CcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCc
Confidence 999 99999999999999999999999 99999999999999999999999999999999875 36899999999
Q ss_pred ccchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhh---hhhccCCCCCCc
Q 011214 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL---AILVHGPKVSRE 465 (491)
Q Consensus 390 Pd~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DL---g~~~~G~~~~~~ 465 (491)
|| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|.+|+|| | |.
T Consensus 329 Pd-----IAGk~-iANP~A~ILS~amML~~~Lg-------~~~~A~~I~~AV~~vl~~g~~T~Dl~~~G----g~----- 386 (409)
T PLN02329 329 PD-----IAGQD-KANPLATILSAAMLLKYGLG-------EEKAAKRIEDAVVDALNKGFRTGDIYSPG----NK----- 386 (409)
T ss_pred hh-----hcCCc-ccChHHHHHHHHHHHhhhCC-------CHHHHHHHHHHHHHHHHcCCcCcccccCC----CC-----
Confidence 99 99999 99999999999999999 99 4679999999999999999999999 5 51
Q ss_pred cccCHHHHHHHHHHHHHhhhcC
Q 011214 466 FYLNTEEFIDAVATNLGAKLRE 487 (491)
Q Consensus 466 ~~~sT~ef~daV~~~l~~~~~~ 487 (491)
.++|+||+|+|+++|+.++++
T Consensus 387 -~~~T~e~~daIi~~l~~~~~~ 407 (409)
T PLN02329 387 -LVGCKEMGEEVLKSVDSKVPA 407 (409)
T ss_pred -ccCHHHHHHHHHHHHHhhCCC
Confidence 389999999999999988864
No 14
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=2.6e-99 Score=777.79 Aligned_cols=335 Identities=19% Similarity=0.203 Sum_probs=299.6
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~-----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|.+.+
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 67999999999999999999888532 4899999999999999999999999999999999999999999996321
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC------CCCeEEEecccCCcccccceeEcCCCceeeEe
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~------~~divIvREntEg~Y~g~e~~~~~~~~~~l~~ 234 (491)
. . ...++++++|||+||||+|+||| |++|++.++. ++|+|||||||||+|+|.+.... +++
T Consensus 84 ~---~--~~~~~~~l~LRk~ldLyaNvRP~--~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~~----- 150 (352)
T TIGR02089 84 D---H--ISLWGLLLKIRREFDQYANVRPA--KLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RGT----- 150 (352)
T ss_pred C---c--cCchhhHHHHHHHcCCeEEEEEe--ecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CCc-----
Confidence 0 0 12345699999999999999998 6788876543 48999999999999999864321 100
Q ss_pred cCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhc
Q 011214 235 DPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (491)
Q Consensus 235 ~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp 313 (491)
..+++ ..++|||+++|||+|+||+||++|++|||++||+|||+.+||||+++|+||+ ++||
T Consensus 151 -----------------~~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~yp 212 (352)
T TIGR02089 151 -----------------DEEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEYP 212 (352)
T ss_pred -----------------cceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhCC
Confidence 12234 4578999999999999999999998889999999999999999999999999 6999
Q ss_pred cccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCc-ceeeecccccccc
Q 011214 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTR 391 (491)
Q Consensus 314 ~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~-~~~fEp~HGSAPd 391 (491)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|||+++. ..||||+||||||
T Consensus 213 ------~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd 286 (352)
T TIGR02089 213 ------DVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD 286 (352)
T ss_pred ------CceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh
Confidence 99999999999999999999999 999999999999999999999999999999997642 3699999999999
Q ss_pred chhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHH
Q 011214 392 HFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTE 471 (491)
Q Consensus 392 ~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ 471 (491)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||| | .++|+
T Consensus 287 -----iAGk~-iANP~a~Ils~amML~~lg-------~~~~A~~I~~Av~~~l~~g~~T~DlG----G-------~~sT~ 342 (352)
T TIGR02089 287 -----IAGKG-IANPIGAIWTAAMMLEHLG-------EKEAGAKIMDAIERVTAAGILTPDVG----G-------KATTS 342 (352)
T ss_pred -----hcCCC-ccCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccCCCC----C-------CcCHH
Confidence 99999 9999999999999999999 46799999999999999999999998 8 58999
Q ss_pred HHHHHHHHHH
Q 011214 472 EFIDAVATNL 481 (491)
Q Consensus 472 ef~daV~~~l 481 (491)
||+|+|+++|
T Consensus 343 e~~~ai~~~l 352 (352)
T TIGR02089 343 EVTEAVCNAL 352 (352)
T ss_pred HHHHHHHhhC
Confidence 9999999875
No 15
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=6.3e-99 Score=795.76 Aligned_cols=337 Identities=23% Similarity=0.253 Sum_probs=307.5
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcC-CCCcHHHHHHHHhcCeEEEccccCCCccchhh
Q 011214 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (491)
Q Consensus 85 ~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg-~~lp~etl~aik~~da~LkGav~tP~~~~~~e 163 (491)
+++|++||||||||||+++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||.+.
T Consensus 4 ~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~---- 79 (482)
T PRK09222 4 KTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGG---- 79 (482)
T ss_pred cceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCcc----
Confidence 47899999999999999999999988889999999999999999987 7999999999999999999999999643
Q ss_pred hccccCCCCccHHHHhhcCceEEEEeeecccC-CCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCC
Q 011214 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (491)
Q Consensus 164 ~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~-p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~ 241 (491)
+++|+|++||++||||||+||| +++ |++.+++ ++|+|||||||||+|+|+++...
T Consensus 80 -----~~~s~~~~LRk~ldLYaNvRP~--r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~---------------- 136 (482)
T PRK09222 80 -----GYKSLNVTLRKTLGLYANVRPC--VSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQT---------------- 136 (482)
T ss_pred -----CccchHHHHHHHcCCeEEeeeE--EecCCCCCCCCCCcCEEEEEeccCCeeccceeecC----------------
Confidence 3688999999999999999997 688 8887655 49999999999999999986431
Q ss_pred CceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccC
Q 011214 242 PVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (491)
Q Consensus 242 ~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~ 319 (491)
.++++ ..+|||+++|||+|+||+||++|+ +|||++||+||||.|||||+++|+||| ++||
T Consensus 137 -----------~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~eyP------ 198 (482)
T PRK09222 137 -----------PDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEYP------ 198 (482)
T ss_pred -----------CCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhCC------
Confidence 23444 477999999999999999999997 689999999999999999999999999 6999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccC
Q 011214 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (491)
Q Consensus 320 ~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~ia 398 (491)
+|+++|++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. .||||+|||||| ||
T Consensus 199 dI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~~--amFEpvHGSAPd-----IA 271 (482)
T PRK09222 199 DIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEEY--AMFEAVHGSAPD-----IA 271 (482)
T ss_pred CceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCCc--eeeECCCCCchh-----hc
Confidence 99999999999999999999999 99999999999999999999999999999999875 589999999999 99
Q ss_pred CCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHH
Q 011214 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 399 Gk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~ 478 (491)
||| +|||+|+|||++|||+|+|+ .++|++|++||.+++++|++|+||+ |.+.+ ...++|+||+|+|+
T Consensus 272 Gk~-iANP~a~IlSaamML~hlG~-------~~~A~~I~~Av~~tl~~G~~T~Dl~----g~~~~-~~~~~T~e~~~aVi 338 (482)
T PRK09222 272 GKN-IANPSGLLNAAVMMLVHIGQ-------FDIAELIENAWLKTLEDGIHTADIY----NEGVS-KKKVGTKEFAEAVI 338 (482)
T ss_pred CCC-ccCcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCCCcccC----CCCCC-CCCcCHHHHHHHHH
Confidence 999 99999999999999999994 5799999999999999999999996 42110 02589999999999
Q ss_pred HHHHhhhc
Q 011214 479 TNLGAKLR 486 (491)
Q Consensus 479 ~~l~~~~~ 486 (491)
++|.++..
T Consensus 339 ~~l~~~p~ 346 (482)
T PRK09222 339 ENLGQKPE 346 (482)
T ss_pred HHHhcCcc
Confidence 99986654
No 16
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=9.2e-99 Score=785.00 Aligned_cols=353 Identities=22% Similarity=0.241 Sum_probs=307.7
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 88 I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
|++||||||||||+++++++|.+. +++|+|+++++|.++|++||+++|++++++|+++|++||||++||...
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~- 104 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK- 104 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc-
Confidence 999999999999999999887521 269999999999999999999999999999999999999999999532
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCCceeeE-ec
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMV-FD 235 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~~~~l~-~~ 235 (491)
+|+|+|++||++||||||+||| |.+|++.+++ ++|+|||||||||+|+|.++....++...+. |.
T Consensus 105 --------~~~s~~l~LRk~ldLyaNvRPv--k~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~ 174 (412)
T PRK06451 105 --------GWKSINVAIRLMLDLYANIRPV--KYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFL 174 (412)
T ss_pred --------CCcChhHHHHHHcCCeEeecee--ecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccc
Confidence 4889999999999999999997 7889887664 4999999999999999998754433221110 11
Q ss_pred C-CCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhh
Q 011214 236 P-EDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (491)
Q Consensus 236 ~-~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eY 312 (491)
. +.|. .+ ...++ ..+++|+.+++||+|+||+||++|+ ++||+|||+||||.+||+|+++|+||++++|
T Consensus 175 ~~~~~~-----~~----~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~ey 245 (412)
T PRK06451 175 RKELGV-----EV----EDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEF 245 (412)
T ss_pred cccccc-----cc----ccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhC
Confidence 1 0000 00 01233 3477999999999999999999997 6899999999999999999999999996589
Q ss_pred cc--------------ccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCC
Q 011214 313 RQ--------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (491)
Q Consensus 313 p~--------------~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~ 377 (491)
|+ +|++++|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++
T Consensus 246 pd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~ 325 (412)
T PRK06451 246 RDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTG 325 (412)
T ss_pred CcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCC
Confidence 85 6888899999999999999999999999 99999999999999999999999999999999886
Q ss_pred cceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhc
Q 011214 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV 457 (491)
Q Consensus 378 ~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~ 457 (491)
.+|||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||+.+.
T Consensus 326 --alFEpvHGSAPd-----iAGk~-iANP~a~IlS~amML~~lg-------~~~~A~~I~~Av~~vl~~G~~T~Dl~~~~ 390 (412)
T PRK06451 326 --GMFEAIHGTAPK-----YAGKN-VANPTGIIKGGELMLRFMG-------WDKAADLIDKAIMESIKQKKVTQDLARFM 390 (412)
T ss_pred --ceeECCCCCccc-----cCCCC-CcCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCccccccC
Confidence 489999999999 99999 9999999999999999998 46799999999999999999999995211
Q ss_pred cCCCCCCccccCHHHHHHHHHHHH
Q 011214 458 HGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 458 ~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
+| ..++|+||+|+|+++|
T Consensus 391 gg------~~~~T~e~~daI~~~l 408 (412)
T PRK06451 391 GV------RALSTTEYTDELISII 408 (412)
T ss_pred CC------CccCHHHHHHHHHHHH
Confidence 14 1489999999999998
No 17
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=8.6e-99 Score=792.39 Aligned_cols=333 Identities=25% Similarity=0.248 Sum_probs=303.5
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcC-CCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 87 PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 87 ~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg-~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
||++|||||||||||++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||.+.
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~------ 75 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG------ 75 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc------
Confidence 699999999999999999999987789999999999999999995 8999999999999999999999999643
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccC-CCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCc
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~-p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~ 243 (491)
+++|+|++||++||||||+||| +++ |++.+++ ++|+|||||||||+|+|.++...
T Consensus 76 ---~~~s~~~~LRk~ldLYANvRPv--~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~------------------ 132 (473)
T TIGR02924 76 ---GHKSLNVTLRKTLGLYANIRPC--VSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT------------------ 132 (473)
T ss_pred ---CcccHHHHHHHHcCCeEEEEEe--eccCCCCCCccCCcCEEEEEeccCceecCceeecc------------------
Confidence 3678899999999999999997 688 7776654 59999999999999999986531
Q ss_pred eeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCe
Q 011214 244 ELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (491)
Q Consensus 244 ~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I 321 (491)
.+++ ...+|||+++|||+|+||+||++|+ +|||++||+||||.|||||+++|+||+ ++|| +|
T Consensus 133 ---------~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~eyP------dI 196 (473)
T TIGR02924 133 ---------PDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEYP------DI 196 (473)
T ss_pred ---------CChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhCC------Cc
Confidence 1233 3477999999999999999999997 689999999999999999999999999 6999 99
Q ss_pred EEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCC
Q 011214 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (491)
Q Consensus 322 ~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk 400 (491)
+++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .||||+|||||| ||||
T Consensus 197 ~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~~--amFEpvHGSAPd-----IAGk 269 (473)
T TIGR02924 197 ESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEEY--AMFEAVHGSAPD-----IAGQ 269 (473)
T ss_pred EEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCCc--ceeecCCCchhh-----hCCC
Confidence 999999999999999999999 99999999999999999999999999999999886 589999999999 9999
Q ss_pred CCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHH
Q 011214 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (491)
Q Consensus 401 ~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~ 480 (491)
| +|||+|+|||++|||+|+|+ .++|++|++||.++|++|++|+||+ |.+.+ ...++|+||+|+|+++
T Consensus 270 ~-iANP~a~IlSaamML~hLG~-------~~~A~~I~~AV~~vl~~G~~T~Dl~----~~~~~-gg~~sT~e~~daVi~~ 336 (473)
T TIGR02924 270 N-IANPSGLLNAAIQMLVHIGQ-------SDIAQLIYNAWLKTLEDGVHTADIY----NEKTS-KQKVGTKEFAEAVTAN 336 (473)
T ss_pred C-ccChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCcccc----ccccC-CCCcCHHHHHHHHHHH
Confidence 9 99999999999999999994 5799999999999999999999996 31100 0268999999999999
Q ss_pred HHhh
Q 011214 481 LGAK 484 (491)
Q Consensus 481 l~~~ 484 (491)
|.++
T Consensus 337 l~~~ 340 (473)
T TIGR02924 337 LGKK 340 (473)
T ss_pred hccc
Confidence 9753
No 18
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=3.8e-98 Score=765.16 Aligned_cols=324 Identities=21% Similarity=0.242 Sum_probs=297.7
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
++|++|||||||||||++++++|...+++|+|+++++|.+ +++|+++|++++++|+++|++||||+++|...+
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~----- 76 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG----- 76 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc-----
Confidence 5799999999999999999999987789999999999987 568999999999999999999999999995331
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCce
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~ 244 (491)
.++|++++||++||||+|+||| |++|++.+++ ++|+|||||||||+|+|.++...
T Consensus 77 ---~~~s~~~~lR~~ldlyanvRP~--k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~------------------- 132 (333)
T TIGR00175 77 ---GHRSLNVALRKELDLYANVVHC--KSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESV------------------- 132 (333)
T ss_pred ---cccchhHHHHHHcCCEEEeEEe--cCCCCCCCCCCCcCEEEEEEeCCCcccceeEecc-------------------
Confidence 3788999999999999999997 7899987765 49999999999999999875421
Q ss_pred eccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeE
Q 011214 245 LDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (491)
Q Consensus 245 ~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~ 322 (491)
++++. ..++||++++||+|+||+||++|+ +|||++||+||||.+||+|+++|+||+ ++|| +|+
T Consensus 133 --------~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------~v~ 197 (333)
T TIGR00175 133 --------PGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEYP------DIT 197 (333)
T ss_pred --------CCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHCC------CCe
Confidence 23443 477999999999999999999997 569999999999999999999999999 5899 999
Q ss_pred EeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecc-ccccccchhhccCCC
Q 011214 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA-HGTVTRHFRLHQKGQ 400 (491)
Q Consensus 323 ~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~-HGSAPd~~~~~iaGk 400 (491)
++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .+|||+ |||||| ||||
T Consensus 198 ~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~--a~fEp~~hGSApd-----iaGk 270 (333)
T TIGR00175 198 FESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDY--AVFEPGVRHTGPD-----IAGQ 270 (333)
T ss_pred eeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCC--ceEeccCCCCchh-----hCCC
Confidence 99999999999999999999 99999999999999999999999999999999876 589995 599999 9999
Q ss_pred CCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCccccCHHHHHHHHHH
Q 011214 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFIDAVAT 479 (491)
Q Consensus 401 ~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~ 479 (491)
| +|||+|+|||++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+||+|+|++
T Consensus 271 ~-iaNP~a~Ils~ammL~~lG-------~~~~a~~i~~Av~~~l~~G~~~T~DlG----G-------~~~T~e~~~ai~~ 331 (333)
T TIGR00175 271 N-IANPTALILSSVMMLNHLG-------LKEHADRIQKAVLSTIAEGKNRTKDLG----G-------TATTSDFTEAVIK 331 (333)
T ss_pred C-ccChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCccChhcC----C-------CcCHHHHHHHHHh
Confidence 9 9999999999999999999 4689999999999999999 6999998 8 5999999999998
Q ss_pred HH
Q 011214 480 NL 481 (491)
Q Consensus 480 ~l 481 (491)
+|
T Consensus 332 ~l 333 (333)
T TIGR00175 332 RL 333 (333)
T ss_pred hC
Confidence 75
No 19
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.7e-98 Score=767.01 Aligned_cols=322 Identities=21% Similarity=0.243 Sum_probs=296.2
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhh
Q 011214 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEF 164 (491)
Q Consensus 85 ~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~ 164 (491)
+++|++||||||||||+++++++|...+++|+|+++++|.+ |+++|++++++|+++|++||||+++|.+.
T Consensus 30 ~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~----- 99 (360)
T PLN00123 30 PRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG----- 99 (360)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc-----
Confidence 36899999999999999999999987789999999999976 57899999999999999999999999643
Q ss_pred ccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC-CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCc
Q 011214 165 GLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (491)
Q Consensus 165 ~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~-~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~ 243 (491)
.++|+++.||++||||||+||| |++||+.+++ ++|+|||||||||+|+|.++...
T Consensus 100 ----~~~s~~l~LR~~ldLyaNvRP~--k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~------------------ 155 (360)
T PLN00123 100 ----GVSSLNVQLRKELDLFASLVNC--FNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVV------------------ 155 (360)
T ss_pred ----CccchHHHHHHHcCCEEEEEEe--ecCCCCCCccCCCCEEEEEeCCCceeccceeecC------------------
Confidence 2567899999999999999997 7899987655 49999999999999999875421
Q ss_pred eeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCe
Q 011214 244 ELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (491)
Q Consensus 244 ~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I 321 (491)
.+++ ...+|||+++|||+|+||+||++|+ +|||++||+|||+.+||||+++|+||+ ++|| +|
T Consensus 156 ---------~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~eyP------dV 219 (360)
T PLN00123 156 ---------PGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKYP------GI 219 (360)
T ss_pred ---------CCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhCC------Cc
Confidence 1233 3478999999999999999999985 689999999999999999999999999 6999 99
Q ss_pred EEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccc--ccc--ccchhhc
Q 011214 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH--GTV--TRHFRLH 396 (491)
Q Consensus 322 ~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~H--GSA--Pd~~~~~ 396 (491)
+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++. .||||+| ||| ||
T Consensus 220 ~~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~--a~FEpvh~hGSA~~Pd----- 292 (360)
T PLN00123 220 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADH--AVFEQGASAGNVGNEK----- 292 (360)
T ss_pred eEeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCc--eEEEecccCCCcCCcc-----
Confidence 999999999999999999999 99999999999999999999999999999999875 5899977 999 99
Q ss_pred cCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCccccCHHHHHH
Q 011214 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFID 475 (491)
Q Consensus 397 iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~~~sT~ef~d 475 (491)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+||+|
T Consensus 293 IAGk~-iANP~a~IlS~amML~~lG-------~~~~A~~I~~AV~~~l~~G~~~T~DlG----G-------~~sT~e~~~ 353 (360)
T PLN00123 293 LVEQK-KANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVIAEGKYRTKDLG----G-------SSTTQEVVD 353 (360)
T ss_pred ccCCC-ccChHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHH
Confidence 99999 9999999999999999999 4679999999999999999 7999998 8 599999999
Q ss_pred HHHHHHH
Q 011214 476 AVATNLG 482 (491)
Q Consensus 476 aV~~~l~ 482 (491)
+|+++|.
T Consensus 354 ai~~~l~ 360 (360)
T PLN00123 354 AVIANLD 360 (360)
T ss_pred HHHHhhC
Confidence 9999873
No 20
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-98 Score=768.99 Aligned_cols=338 Identities=22% Similarity=0.206 Sum_probs=301.9
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 85 ~~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
.++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 468999999999999999999988632 6899999999999999999999999999999999999999999997532
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCC--CC------CCCeEEEecccCCcccccceeEcCCCceee
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--GW------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~--~~------~~divIvREntEg~Y~g~e~~~~~~~~~~l 232 (491)
++ .++ ...+| |++||++||||+|+||| |++||+.+ +. ++|+|||||||||+|+|.++....
T Consensus 82 ~~-~~~-~~~~~-~~~LR~~ldlyanvRP~--r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~------ 150 (358)
T PRK00772 82 LP-PDV-RPERG-LLALRKELGLFANLRPA--KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREG------ 150 (358)
T ss_pred CC-ccC-CChhh-HHHHHHHcCCeEEEeEe--ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccC------
Confidence 11 011 12455 99999999999999998 68888764 32 599999999999999998754311
Q ss_pred EecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhh
Q 011214 233 VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (491)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~e 311 (491)
+ .+.+++ ...++||++++||+|+||+||++|+++||++||+|||| ++|+|+++|+||+ ++
T Consensus 151 ------~-----------~~~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~e 211 (358)
T PRK00772 151 ------L-----------GGEERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-KE 211 (358)
T ss_pred ------C-----------CCceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-hH
Confidence 0 012344 44789999999999999999999988999999999999 8999999999999 59
Q ss_pred hccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccc
Q 011214 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (491)
Q Consensus 312 Yp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAP 390 (491)
|| +|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||+++ ..||||+|||||
T Consensus 212 yp------~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSAp 284 (358)
T PRK00772 212 YP------DVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAP 284 (358)
T ss_pred CC------CceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchh
Confidence 99 99999999999999999999999 99999999999999999999999999999999886 369999999999
Q ss_pred cchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhh---hhhccCCCCCCcc
Q 011214 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL---AILVHGPKVSREF 466 (491)
Q Consensus 391 d~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DL---g~~~~G~~~~~~~ 466 (491)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+|| | |
T Consensus 285 d-----iAGk~-~aNP~a~Ils~ammL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dl~~~g----g------- 340 (358)
T PRK00772 285 D-----IAGKG-IANPIATILSAAMMLRYSLG-------LEEAADAIEAAVEKVLAQGYRTADIAEGG----G------- 340 (358)
T ss_pred h-----hcCCC-CcCCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCcCcccccCC----C-------
Confidence 9 99999 99999999999999999 98 4689999999999999999999999 5 6
Q ss_pred ccCHHHHHHHHHHHHHh
Q 011214 467 YLNTEEFIDAVATNLGA 483 (491)
Q Consensus 467 ~~sT~ef~daV~~~l~~ 483 (491)
.++|+||+|+|+++|.+
T Consensus 341 ~~~T~e~~~av~~~l~~ 357 (358)
T PRK00772 341 KVSTSEMGDAILAALAE 357 (358)
T ss_pred CcCHHHHHHHHHHHhhc
Confidence 69999999999999954
No 21
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=7.3e-98 Score=766.38 Aligned_cols=334 Identities=22% Similarity=0.193 Sum_probs=296.0
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchh
Q 011214 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (491)
Q Consensus 87 ~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~ 162 (491)
+|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+....
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999988532 689999999999999999999999999999999999999999999643110
Q ss_pred hhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCC--C------CCCCeEEEecccCCcccccceeEcCCCceeeEe
Q 011214 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (491)
Q Consensus 163 e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~--~------~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~ 234 (491)
... ..+.+ +++||++||||+|+||| |++||+.. + .++|+|||||||||+|+|.++.....
T Consensus 81 -~~~-~~~~~-~~~LR~~ldlyanvRP~--r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~------- 148 (349)
T TIGR00169 81 -RDQ-RPEQG-LLKLRKSLDLFANLRPA--KVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGA------- 148 (349)
T ss_pred -ccc-cchhh-HHHHHHHcCCeEEEEEe--eccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCC-------
Confidence 000 01233 99999999999999998 67887653 1 35999999999999999987532110
Q ss_pred cCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhc
Q 011214 235 DPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (491)
Q Consensus 235 ~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp 313 (491)
+ ..+++. ..++||+++|||+|+||+||++|+++||+|||+|||| ++|+|+++|+||+ ++||
T Consensus 149 ----~------------~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~yP 210 (349)
T TIGR00169 149 ----G------------GEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEYP 210 (349)
T ss_pred ----C------------CcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhCC
Confidence 0 123443 4779999999999999999999988999999999999 9999999999999 6999
Q ss_pred cccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccc
Q 011214 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392 (491)
Q Consensus 314 ~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~ 392 (491)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ..||||+||||||
T Consensus 211 ------~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPd- 282 (349)
T TIGR00169 211 ------DVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPD- 282 (349)
T ss_pred ------CceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhH-
Confidence 99999999999999999999999 99999999999999999999999999999999775 3699999999999
Q ss_pred hhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHH
Q 011214 393 FRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTE 471 (491)
Q Consensus 393 ~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ 471 (491)
||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|.+|+||| | .++|+
T Consensus 283 ----iAGk~-iANP~a~IlS~amML~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~t~ 339 (349)
T TIGR00169 283 ----IAGKG-IANPIAQILSAAMMLRYSFN-------LEEAADAIEAAVKKVLAEGYRTPDLG----S-------SATTE 339 (349)
T ss_pred ----hcCCC-CCChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHcCCCccccC----C-------CcchH
Confidence 99999 99999999999999999 78 57899999999999999999999998 8 58999
Q ss_pred HHHHHHHHHH
Q 011214 472 EFIDAVATNL 481 (491)
Q Consensus 472 ef~daV~~~l 481 (491)
||+++|++.|
T Consensus 340 e~t~av~~~~ 349 (349)
T TIGR00169 340 VGTAEMGEEL 349 (349)
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 22
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1e-97 Score=777.83 Aligned_cols=358 Identities=21% Similarity=0.212 Sum_probs=303.8
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 88 I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~--~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+ ++|++++++|+++|++||||++||.+
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888521 259999999999999999999 99999999999999999999999953
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCC-ceeeE
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPG-KLKMV 233 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~-~~~l~ 233 (491)
. .++|+|++||++||||||+||| |.+|++.++. ++|+|||||||||+|+|.++....++ ...+.
T Consensus 102 ~---------~~~s~~l~LR~~ldLyaNvRPv--k~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~ 170 (409)
T PRK07006 102 G---------GIRSLNVALRQELDLYVCLRPV--RYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIK 170 (409)
T ss_pred c---------CccChHHHHHHHcCCEEEEEEE--ecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeee
Confidence 3 3678999999999999999998 6778776553 49999999999999999986432111 11111
Q ss_pred ecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhh
Q 011214 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (491)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~e 311 (491)
|..+..+ .++.++. .+++ ..++|||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|.|||+++
T Consensus 171 ~~~~~~~----~~~~~~~-~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~e 245 (409)
T PRK07006 171 FLQEEMG----VKKIRFP-ETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEE 245 (409)
T ss_pred ccccccC----ccccccc-ccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHH
Confidence 1111000 0111111 1233 3577999999999999999999996 689999999999999999999888999658
Q ss_pred hcccccc-------------CCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCC
Q 011214 312 WRQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (491)
Q Consensus 312 Yp~~f~~-------------~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~ 377 (491)
||+.|+. ++|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++.
T Consensus 246 y~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~ 325 (409)
T PRK07006 246 FGDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGH 325 (409)
T ss_pred hhhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCc
Confidence 9777775 599999999999999999999999 99999999999999999999999999999999664
Q ss_pred cceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhc
Q 011214 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV 457 (491)
Q Consensus 378 ~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~ 457 (491)
.||||+|||||| ||||| +|||+|+|||++|||+|||+ .++|++|++||.+++++|.+|+||+...
T Consensus 326 --a~FEpvHGSAPd-----iAGk~-iANP~a~IlS~amML~~lG~-------~~~A~~Ie~Av~~~l~~G~~T~Dl~~~~ 390 (409)
T PRK07006 326 --AIFEATHGTAPK-----YAGLD-KVNPGSVILSAEMMLRHMGW-------TEAADLIIKSMEKTIASKTVTYDFARLM 390 (409)
T ss_pred --eEEECCCCcchh-----hCCCC-CcChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHhcCCccccccccC
Confidence 699999999999 99999 99999999999999999994 5799999999999999999999995221
Q ss_pred cCCCCCCccccCHHHHHHHHHHHH
Q 011214 458 HGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 458 ~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
.|. +.++|+||+|+|+++|
T Consensus 391 ~gg-----~~~~T~e~~daI~~~l 409 (409)
T PRK07006 391 EGA-----TEVKCSEFGDALIKNM 409 (409)
T ss_pred CCC-----cccCHHHHHHHHHhhC
Confidence 121 2489999999999875
No 23
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.5e-97 Score=779.07 Aligned_cols=358 Identities=21% Similarity=0.204 Sum_probs=304.5
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcC--CCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 88 I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg--~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
|++||||||||||+++++++|.+. +++|+|+++++|.+++++|| +++|++++++|+++|++||||++||..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999887521 16999999999999999999 999999999999999999999999953
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCCceee-E
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-V 233 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~~~~l-~ 233 (491)
. +|+|+|+.||++||||||+||| |++|++.+++ ++|+|||||||||+|.|.++...+++...+ -
T Consensus 109 ~---------~~~s~~l~LR~~ldLyaNvRP~--k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~ 177 (416)
T TIGR00183 109 G---------GIRSLNVALRQELDLYVCLRPV--RYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIR 177 (416)
T ss_pred c---------cccCcHHHHHHHcCCEEEEeEe--ecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeec
Confidence 2 4789999999999999999998 6777766553 499999999999999999875433322221 1
Q ss_pred ecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhh
Q 011214 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (491)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~e 311 (491)
|....++. ...+|. .+++ ..++||+++++||+|+||+||++|+ ++||+|||+||||.+||+|+++|.|||+++
T Consensus 178 ~~~~~~g~----~~~~~~-~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~e 252 (416)
T TIGR00183 178 FLQNELGV----KKIRFP-EDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKE 252 (416)
T ss_pred ccccccCc----cccccc-cccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 21110110 001111 2233 3577999999999999999999995 689999999999999999999999999547
Q ss_pred hcccccc-------------CCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCC
Q 011214 312 WRQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (491)
Q Consensus 312 Yp~~f~~-------------~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~ 377 (491)
||.+|+. ++|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||++.
T Consensus 253 y~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~ 332 (416)
T TIGR00183 253 FGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEI 332 (416)
T ss_pred HhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCc
Confidence 9766665 289999999999999999999999 99999999999999999999999999999999774
Q ss_pred cceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhc
Q 011214 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV 457 (491)
Q Consensus 378 ~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~ 457 (491)
.||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||+.+.
T Consensus 333 --alFEp~HGSAPd-----iAGk~-iANP~a~IlS~amML~~lg-------~~~~A~~Ie~AV~~~l~~G~~T~Dl~~~~ 397 (416)
T TIGR00183 333 --GIFEATHGTAPK-----YAGQD-KVNPGSIILSGEMMLEHMG-------WKEAADLIKKAMEKAIASKIVTYDFARLM 397 (416)
T ss_pred --eEEECCCCCchh-----hcCCC-CCCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCccccccccc
Confidence 699999999999 99999 9999999999999999999 46899999999999999999999995222
Q ss_pred cCCCCCCccccCHHHHHHHHHHHH
Q 011214 458 HGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 458 ~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
+|. +.++|+||+|+|+++|
T Consensus 398 gg~-----~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 398 DGA-----KEVKCSEFAEAIIENM 416 (416)
T ss_pred CCC-----cccCHHHHHHHHHhhC
Confidence 141 1489999999999875
No 24
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-97 Score=759.31 Aligned_cols=329 Identities=18% Similarity=0.170 Sum_probs=295.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC---CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchh
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~---~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~ 162 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|....
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 57999999999999999999988643 8999999999999999999999999999999999999999999995321
Q ss_pred hhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 163 e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
+ ..++|.+++||++||||+|+||+ |++|++.++. ++|+|||||||||+|+|.+.... +++
T Consensus 83 --~--~~~~~~~~~LRk~ldLyaNvRP~--r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~-~~~--------- 146 (344)
T PRK03437 83 --G--VLERGLLLKLRFALDHYVNLRPS--KLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALR-VGT--------- 146 (344)
T ss_pred --C--CcccchHHHHHHHcCCeEEEEEe--ecCCCCCCcCCCCCCCCEEEEEECCCccccCCccccc-CCC---------
Confidence 0 12567799999999999999997 7888877654 59999999999999999864321 110
Q ss_pred CCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhcccc
Q 011214 239 GTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (491)
Q Consensus 239 g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f 316 (491)
..+++ ...+|||++++||+|+||+||++|+ ++||++||+|||+.+||||+++|+||+ ++||
T Consensus 147 -------------~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp--- 209 (344)
T PRK03437 147 -------------PHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEYP--- 209 (344)
T ss_pred -------------cceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhCC---
Confidence 12344 4578999999999999999999995 679999999999999999999999999 6999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCc-ceeeeccccccccchh
Q 011214 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFR 394 (491)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~-~~~fEp~HGSAPd~~~ 394 (491)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. +.||||+||||||
T Consensus 210 ---dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPd--- 283 (344)
T PRK03437 210 ---DVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPD--- 283 (344)
T ss_pred ---CceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchh---
Confidence 99999999999999999999999 999999999999999999999999999999998642 4799999999999
Q ss_pred hccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHH
Q 011214 395 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFI 474 (491)
Q Consensus 395 ~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~ 474 (491)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| +| | .++|+||+
T Consensus 284 --iAGk~-iANP~a~IlS~amML~~lg-------~~~~a~~I~~Av~~~l~~g-----~g----g-------~~~T~e~~ 337 (344)
T PRK03437 284 --IAGQG-IADPTAAILSVALLLDHLG-------EEDAAARIEAAVEADLAER-----GK----M-------GRSTAEVG 337 (344)
T ss_pred --hcCCC-ccChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhc-----CC----C-------CcCHHHHH
Confidence 99999 9999999999999999999 4689999999999999998 45 6 58999999
Q ss_pred HHHHHHH
Q 011214 475 DAVATNL 481 (491)
Q Consensus 475 daV~~~l 481 (491)
|+|+++|
T Consensus 338 ~ai~~~l 344 (344)
T PRK03437 338 DRIAARL 344 (344)
T ss_pred HHHHhhC
Confidence 9999875
No 25
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=1.5e-96 Score=749.66 Aligned_cols=318 Identities=22% Similarity=0.230 Sum_probs=296.3
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhccc
Q 011214 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (491)
Q Consensus 88 I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~l~ 167 (491)
|++||||||||||+++++++|...+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~-------- 72 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP-------- 72 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC--------
Confidence 689999999999999999999877899999999999999999999999999999999999999999999753
Q ss_pred cCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC--CCCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCcee
Q 011214 168 SMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (491)
Q Consensus 168 ~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~--~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~~ 245 (491)
.++|+|++|||+||||+|+||| |.+|++.++. ++|+|||||||||+|+|.++..
T Consensus 73 -~~~s~~~~LR~~ldlyanvRP~--r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~~--------------------- 128 (322)
T TIGR02088 73 -GYKSVIVTLRKELDLYANVRPA--KSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFGF--------------------- 128 (322)
T ss_pred -CccChHHHHHHHcCCEEEEEEe--eccCCCCCCCCCCCCEEEEEeCcCCeeecccccc---------------------
Confidence 3788999999999999999997 6888887654 5999999999999999986421
Q ss_pred ccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeEEe
Q 011214 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYE 324 (491)
Q Consensus 246 ~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e 324 (491)
.+++ ...++||+++|||+|+||+||++|++|||++||+|||+.+||||+++|+||+ ++|| |+++
T Consensus 129 -------~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-------v~~~ 193 (322)
T TIGR02088 129 -------SDRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRYG-------VEYR 193 (322)
T ss_pred -------CcceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhCC-------eeee
Confidence 1123 3477999999999999999999999889999999999999999999999999 6997 9999
Q ss_pred eEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCc
Q 011214 325 HRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETS 403 (491)
Q Consensus 325 ~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~i 403 (491)
|++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. .||||.|||||| ||||| +
T Consensus 194 ~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~fep~hGsa~d-----iaG~~-~ 265 (322)
T TIGR02088 194 DMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDRK--ALFEPVHGSAPD-----IAGKG-I 265 (322)
T ss_pred eeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCCc--eEEecCCCChhH-----hCCCC-C
Confidence 999999999999999999 99999999999999999999999999999999875 589999999999 99999 9
Q ss_pred cCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHH
Q 011214 404 TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 404 ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~ 478 (491)
|||+|+|+|++|||+|+|+ .++|++|++||.+++++|.+|+||| | .++|+||+|+|+
T Consensus 266 aNp~a~i~A~~~~l~~~g~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~~av~ 322 (322)
T TIGR02088 266 ANPTAAILSVAMMLDYLGE-------LEKGKLVWEAVEYYIIEGKKTPDLG----G-------TAKTKEVGDEIA 322 (322)
T ss_pred CChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHhC
Confidence 9999999999999999994 6799999999999999999999998 8 599999999985
No 26
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-97 Score=730.60 Aligned_cols=325 Identities=23% Similarity=0.312 Sum_probs=304.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
.+|++||||||||||++++++++.++.++|+|+.+|++...-..++..+|+++++++++++++||||+.||-++
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k------ 109 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK------ 109 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc------
Confidence 56799999999999999999999988999999999998654444778999999999999999999999999876
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC-CCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCce
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~-~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~ 244 (491)
+.+|+|++|||+|+|||||||| ++++|..++++ +|+|+|||||||+|+|+||.++
T Consensus 110 ---gh~S~nl~LRK~f~LyANVRPc--~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vv------------------- 165 (365)
T KOG0785|consen 110 ---GHRSLNLALRKEFGLYANVRPC--KSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVV------------------- 165 (365)
T ss_pred ---ccccHHHHHHHHhchhccceec--ccccCCcCCCCCceEEEEecCCccccccceeecc-------------------
Confidence 5789999999999999999996 89999998875 9999999999999999999764
Q ss_pred eccccccCCceEEE-EeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeE
Q 011214 245 LDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (491)
Q Consensus 245 ~~~~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~ 322 (491)
+||+++ ..+|+..++||++|||+||++++ ++||++||+|||+.+||||+++|+|++ ++|| +|+
T Consensus 166 --------pGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y~------dI~ 230 (365)
T KOG0785|consen 166 --------PGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKYP------DIK 230 (365)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhCC------ccc
Confidence 457777 45999999999999999999997 699999999999999999999999998 6999 999
Q ss_pred EeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCC
Q 011214 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (491)
Q Consensus 323 ~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~ 401 (491)
||++|+|+||++|+++|..| |+|+||||||||||+||+|+||||+.||+|+| ++ +.+||++|||||| ||||+
T Consensus 231 ~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPD-----IAGkd 303 (365)
T KOG0785|consen 231 FEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPD-----IAGKD 303 (365)
T ss_pred hhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCcc-----cccCC
Confidence 99999999999999999999 99999999999999999999999999999999 65 4689999999999 99999
Q ss_pred CccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCC-CchhhhhhccCCCCCCccccCHHHHHHHHHHH
Q 011214 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (491)
Q Consensus 402 ~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~-~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~ 480 (491)
+|||+|++||++|||+|++ +.+.|++|+.||.+++++|. +|+||| | .++|+||+++|+++
T Consensus 304 -lANPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG----G-------ka~~seft~aVc~~ 364 (365)
T KOG0785|consen 304 -LANPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG----G-------KATTSEFTDAVCDR 364 (365)
T ss_pred -cCCcHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccC----C-------CccchHHHHHHHhc
Confidence 9999999999999999999 56899999999999999995 999999 8 59999999999987
Q ss_pred H
Q 011214 481 L 481 (491)
Q Consensus 481 l 481 (491)
|
T Consensus 365 l 365 (365)
T KOG0785|consen 365 L 365 (365)
T ss_pred C
Confidence 5
No 27
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.7e-94 Score=751.54 Aligned_cols=358 Identities=20% Similarity=0.161 Sum_probs=297.3
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 88 I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~--~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
|++|||||||||||++++++|.+. +++|+|.++++|.++++++|+ .+|++++++|+++|++||||++||.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999887521 258999999999999999996 79999999999999999999999964
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCCceee--
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-- 232 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~~~~l-- 232 (491)
. +++|.|++||++||||+|+||| |.+||+.+++ ++|+|||||||||+|+|+++....+....+
T Consensus 111 ~---------g~~s~~l~LRk~ldLyaNvRPv--r~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 111 G---------GIRSLNVALRQIFDLYSCVRPC--RYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred c---------CccchHHHHHHHcCCceeeeEe--eccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccc
Confidence 3 3678899999999999999997 6888887665 499999999999999999764311110001
Q ss_pred ----EecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhC---CCCEEEEeCCccccccchHHHHHH
Q 011214 233 ----VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK---KWPLYLSTKNTILKKYDGRFKDIF 304 (491)
Q Consensus 233 ----~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r---~~kVt~v~KaNIlk~tdglfr~i~ 304 (491)
.+.+.++.... .+ ...+++ ..+++||++++||+|+||+||++| +++||+|||+||||.+||+|++++
T Consensus 180 ~~~~~~~~~~~~~~~----~~-~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~ 254 (474)
T PRK07362 180 HLNEEVIPASPELGK----RQ-IPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWG 254 (474)
T ss_pred ccccccccccccccc----cc-cccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHH
Confidence 01110000000 00 012234 347799999999999999999999 368999999999999999999988
Q ss_pred HHHHHhhh-------------------ccc------------c------------------------------ccCCeEE
Q 011214 305 QQVYEERW-------------------RQK------------F------------------------------EEHSIWY 323 (491)
Q Consensus 305 ~eVa~~eY-------------------p~~------------f------------------------------~~~~I~~ 323 (491)
.|||+++| |+- | -+++|.+
T Consensus 255 ~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 334 (474)
T PRK07362 255 YELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLV 334 (474)
T ss_pred HHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCccee
Confidence 89995355 420 0 0136899
Q ss_pred eeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCC
Q 011214 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402 (491)
Q Consensus 324 e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~ 402 (491)
+|++||+++||||++|++| ||||+|||||||||++|+++|||||+||+|||++. .||||+|||||| |||||
T Consensus 335 ~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~--a~FEpvHGSAPd-----IAGk~- 406 (474)
T PRK07362 335 DDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNA--AIFEATHGTAPK-----HAGLD- 406 (474)
T ss_pred ehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCc--eeeecCCCCchh-----hcCCC-
Confidence 9999999999999999999 99999999999999999999999999999999875 589999999999 99999
Q ss_pred ccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHH
Q 011214 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (491)
Q Consensus 403 iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~ 480 (491)
+|||+|+|||++|||+|+| +.++|++|++||.+++++|.+|+||| |........++|+||+++|+++
T Consensus 407 iANP~A~ILS~aMML~~LG-------~~~~A~~I~~AV~~vl~~g~~T~Dlg----~~~~~~~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 407 RINPGSVILSGVMMLEYLG-------WQEAADLITKGLSAAIANKQVTYDLA----RLMEPPVDPLSCSEFAEAIISH 473 (474)
T ss_pred CcCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcccCCC----CccccCCCCcCHHHHHHHHHhc
Confidence 9999999999999999999 46899999999999999999999997 4100000158999999999986
No 28
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.3e-93 Score=737.01 Aligned_cols=330 Identities=27% Similarity=0.312 Sum_probs=290.8
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchh
Q 011214 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (491)
Q Consensus 87 ~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~ 162 (491)
+|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|+|++++|+++|++||||+++|....
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~-- 78 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPG-- 78 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSS--
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccc--
Confidence 5899999999999999999877543 5899999999999999999999999999999999999999999998432
Q ss_pred hhccccCCCC--ccHHHHhhcCceEEEEeeecccCC--CCCCCC------CCCeEEEecccCCcccccceeEcCCCceee
Q 011214 163 EFGLKSMWRS--PNGTIRNILNGTVFREPILCQNIP--RIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (491)
Q Consensus 163 e~~l~~~~~S--pn~~LR~~LdLyanvRPi~~k~~p--~~~~~~------~~divIvREntEg~Y~g~e~~~~~~~~~~l 232 (491)
.++ ++++||+.||||+|+||+ |.+| +..++. ++|||||||||||+|++.++.....
T Consensus 79 -------~~~~~~l~~lR~~ldl~anvRp~--~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~----- 144 (348)
T PF00180_consen 79 -------IRSENGLLKLRKELDLYANVRPV--RSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDG----- 144 (348)
T ss_dssp -------HSHHHHHHHHHHHTTHHEEEEEE--EEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSE-----
T ss_pred -------cccHHHHHHHHHhcccceeeEEE--EEeccccccccccccccCcceEEEecccccCcccCCCCceeec-----
Confidence 222 348999999999999998 5664 333322 3999999999999999999876310
Q ss_pred EecCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHh
Q 011214 233 VFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (491)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~~eVa~~ 310 (491)
+...+++. ..+|||+++|||+|+||+||++| +++||+|||+|||+.++ +|+++|+||+++
T Consensus 145 -----------------~~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~ 206 (348)
T PF00180_consen 145 -----------------GTPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQ 206 (348)
T ss_dssp -----------------EEGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHH
T ss_pred -----------------cCCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHh
Confidence 01234554 47899999999999999999999 68999999999999989 999999999954
Q ss_pred hhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccccc
Q 011214 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (491)
Q Consensus 311 eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSA 389 (491)
+|| +|+++|++||+++|+||++|++| ||||+|||||||||++++++||+||+||+|+|+++ ..+|||+||||
T Consensus 207 ~yp------~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSA 279 (348)
T PF00180_consen 207 EYP------DIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSA 279 (348)
T ss_dssp THT------TSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTT
T ss_pred hcc------eeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-ccccccccccc
Confidence 999 99999999999999999999999 99999999999999999999999999999999654 47999999999
Q ss_pred ccchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCcccc
Q 011214 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYL 468 (491)
Q Consensus 390 Pd~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~ 468 (491)
|| |+||| +|||+|+|||++|||+| +| +.+.|++|++||.+++++|++|+||| |.. .+.+
T Consensus 280 pd-----iaGk~-~aNP~a~Ils~a~mL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----g~~---~~~~ 339 (348)
T PF00180_consen 280 PD-----IAGKG-IANPIAMILSAAMMLEHSLG-------LPEAADAIEKAVEKVLEEGIRTPDLG----GSA---TTAV 339 (348)
T ss_dssp GG-----GTTSS-HS-THHHHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHTTEEBGGGH----TTT---CEEB
T ss_pred cc-----ccCCc-ccCcHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcCCCCcccc----CCC---CCCC
Confidence 99 99999 99999999999999999 88 67899999999999999999999999 731 2356
Q ss_pred CHHHHHHHH
Q 011214 469 NTEEFIDAV 477 (491)
Q Consensus 469 sT~ef~daV 477 (491)
+|+||+|+|
T Consensus 340 ~T~e~~daV 348 (348)
T PF00180_consen 340 STEEFGDAV 348 (348)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999997
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=9.9e-91 Score=704.80 Aligned_cols=363 Identities=37% Similarity=0.475 Sum_probs=327.6
Q ss_pred EEEEcCCccHHHHHHHHHHH----HhcCC---CceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 88 IVEMDGDEMTRIIWQMIKDK----LIFPY---LDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 88 I~vi~GDgIGpeI~~~~~~~----l~~~~---~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
|.+|.|||||+|||+++.++ ++.+| .+|+|.|+++|.+++++||+.||+||+++|+++.|.+|||++||.+
T Consensus 21 iP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg-- 98 (407)
T COG0538 21 IPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG-- 98 (407)
T ss_pred cceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc--
Confidence 46788999999999887664 45567 8999999999999999999999999999999999999999999964
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeec-ccCCCCCCC-CCCCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~-k~~p~~~~~-~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
++|+|||++|||.||||+|+|||++ +++|+++++ |++||||+||||||+|.|+|+...+++..++.+-..+
T Consensus 99 -------~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~ 171 (407)
T COG0538 99 -------KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLED 171 (407)
T ss_pred -------ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhc
Confidence 4899999999999999999999985 488988876 8899999999999999999999999999998765543
Q ss_pred CCCCceecccccc-CCceEEEEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhh-----
Q 011214 239 GTGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER----- 311 (491)
Q Consensus 239 g~~~~~~~~~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~e----- 311 (491)
+ ..+++.+|+ ..|++..+ +++++++|++|.||+||.+++ ++||++||.||||+|+|.|+++++|||+++
T Consensus 172 e---~~~~~i~~pe~~GIgikp-~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~ 247 (407)
T COG0538 172 E---MGVKKIRFPEDSGIGIKP-ISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDE 247 (407)
T ss_pred c---cccceEecCCCCceEEEe-cCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhccccc
Confidence 3 224566775 57777666 788999999999999999998 799999999999999999999999999764
Q ss_pred ---hccccccCC----eEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeee
Q 011214 312 ---WRQKFEEHS----IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAE 383 (491)
Q Consensus 312 ---Yp~~f~~~~----I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fE 383 (491)
|..+|+..+ |.|+|+++|+|.+|++++|+.| ||+|+||.||++||.+|+++|||||+||+||| ++ +++||
T Consensus 248 ~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~-~~-~~~fE 325 (407)
T COG0538 248 VVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIG-DG-TAEFE 325 (407)
T ss_pred ccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceec-Cc-eEEEE
Confidence 677888888 9999999999999999999999 99999999999999999999999999999999 33 57999
Q ss_pred ccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCC
Q 011214 384 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVS 463 (491)
Q Consensus 384 p~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~ 463 (491)
|+|||||+ ++||+ ++||+|+||||.|||+|+|++ ++|+.|++||.+++++|++|+||++++.|. .
T Consensus 326 A~HGTapk-----~aG~~-~~Np~a~Ils~~~ml~~~Gw~-------eaa~li~~a~~~ti~~~~vT~DlArl~~~~--~ 390 (407)
T COG0538 326 ATHGTAPK-----YAGKD-STNPIASILSGTMMLRHRGWL-------EAADLIEKAVEDTIESGKVTYDLARLMGGA--K 390 (407)
T ss_pred eccCcccc-----ccCcC-CCCcHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHhCceeHHHHHhhCCC--c
Confidence 99999999 68997 999999999999999999964 589999999999999999999999888552 1
Q ss_pred CccccCHHHHHHHHHHHHH
Q 011214 464 REFYLNTEEFIDAVATNLG 482 (491)
Q Consensus 464 ~~~~~sT~ef~daV~~~l~ 482 (491)
.+++|+||+|+|+++|+
T Consensus 391 --~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 391 --RYLSTSEFADAIIENLK 407 (407)
T ss_pred --cceeHHHHHHHHHHhcC
Confidence 27999999999999874
No 30
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-84 Score=644.85 Aligned_cols=330 Identities=20% Similarity=0.234 Sum_probs=303.3
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.|...+++|++|||||||||++.++.+++.+.++|++|+++++++. .+.+...++|+++++++++|.|||.+.||+..
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~ 114 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDLP 114 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCCc
Confidence 4888899999999999999999999999999999999999999872 23445579999999999999999999999432
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC-CCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~-~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
++..|.|+.||++||||||+-.| +++||++++++ +|||||||||||+|+++||..+
T Consensus 115 --------g~~~s~n~~LR~~LDLyanvv~~--~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V------------- 171 (375)
T KOG0784|consen 115 --------GGAKSLNVKLRKELDLYANVVHC--KSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV------------- 171 (375)
T ss_pred --------cchhhhHHHHHHhhhhhhheeee--eccCCcccccCCccEEEEecCCcccccccccccC-------------
Confidence 35788999999999999999775 89999999886 9999999999999999999764
Q ss_pred CCCCceeccccccCCceEEE-EeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhhcccc
Q 011214 239 GTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (491)
Q Consensus 239 g~~~~~~~~~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f 316 (491)
+||.++ .++|++.++|||||||+||.+.+ ||||+||||||||.+||||+++|+||+ +.||
T Consensus 172 --------------pGVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva-~~Yp--- 233 (375)
T KOG0784|consen 172 --------------PGVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVA-KKYP--- 233 (375)
T ss_pred --------------cchhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHH-hcCC---
Confidence 467777 45899999999999999999997 799999999999999999999999999 4799
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecc--ccccccch
Q 011214 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA--HGTVTRHF 393 (491)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~--HGSAPd~~ 393 (491)
+|+++.|+||++|||||.+|++| |+|+|||||.|+|.++++++||.|++|++|+|++++ +|||. |+. .+
T Consensus 234 ---~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~yA--VFE~g~r~~~-~~-- 305 (375)
T KOG0784|consen 234 ---DITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDYA--VFEPGARHTG-TS-- 305 (375)
T ss_pred ---CccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccceE--Eecccccccc-hh--
Confidence 99999999999999999999999 999999999999999999999999999999999996 67994 444 34
Q ss_pred hhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCccccCHHH
Q 011214 394 RLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEE 472 (491)
Q Consensus 394 ~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~~~sT~e 472 (491)
++||+ +|||+|+|+|+++||+||| ++.+|++|+.||.++|.+| ++|+||| | +.||++
T Consensus 306 ---~~g~~-~aNPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG----G-------~~Tt~d 363 (375)
T KOG0784|consen 306 ---IAGKN-IANPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG----G-------QSTTQD 363 (375)
T ss_pred ---hhccc-ccCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccC----C-------CcchHH
Confidence 89999 9999999999999999999 6789999999999999999 5999999 8 799999
Q ss_pred HHHHHHHHHH
Q 011214 473 FIDAVATNLG 482 (491)
Q Consensus 473 f~daV~~~l~ 482 (491)
|+++|+++|+
T Consensus 364 vi~avI~~l~ 373 (375)
T KOG0784|consen 364 VIDAVIANLR 373 (375)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 31
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-76 Score=570.35 Aligned_cols=338 Identities=21% Similarity=0.197 Sum_probs=294.0
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 85 ~~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
+++|+++|||||||||+..++.+|.+. +++|+|++.++|+.+.|.+|.|+|+|++++.|++|++|+|++|.|.|+.
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 589999999999999999999888654 6899999999999999999999999999999999999999999999863
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCC--------CCCCeEEEecccCCcccccceeEcCCCceee
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG--------WKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~--------~~~divIvREntEg~Y~g~e~~~~~~~~~~l 232 (491)
- ++.+ ....+.||+.|.+|+|+||+ ..+|.++.- ..+|++||||.|+|.|.|....
T Consensus 84 ~---~lrp--e~gll~ir~~lkvfanlrp~--~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~--------- 147 (363)
T KOG0786|consen 84 N---HLRP--EMGLLKIRRDLKVFANLRPA--TVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRN--------- 147 (363)
T ss_pred C---CcCh--hhhHHHHHHHHHHHhcCCcc--hhhHhhhccccccHHHhcCcceEEeeeecCceeecCccc---------
Confidence 1 1111 11248999999999999997 566765431 1389999999999999874321
Q ss_pred EecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchHHHHHHHHHHH
Q 011214 233 VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (491)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~--~kVt~v~KaNIlk~tdglfr~i~~eVa~ 309 (491)
+ .+.+++ ++..|+-.++.||+|.||+.|++|+ .++|++||+|||. ++.|||+.+.+..+
T Consensus 148 ----e-------------ng~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k 209 (363)
T KOG0786|consen 148 ----E-------------NGEGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALK 209 (363)
T ss_pred ----C-------------CCcceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHH
Confidence 1 134565 4578999999999999999999998 7999999999998 89999999998777
Q ss_pred hhhccccccCCeEEeeEeHHHHHHHHHhCCCCe--eeeccCCccchhhhhhhhhcCCcccccccccCC----CCcceeee
Q 011214 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY--VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSS----DGKTLEAE 383 (491)
Q Consensus 310 ~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F--VIvt~NlfGDILSDlaA~l~GslGlapSanig~----d~~~~~fE 383 (491)
+||| ++++.|++||+++||||++|.+| +|+|.|+||||+||.++.+.||+||.||++++. +...++||
T Consensus 210 ~EyP------~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~E 283 (363)
T KOG0786|consen 210 SEYP------DLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFE 283 (363)
T ss_pred hhCC------CcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccCCcccc
Confidence 8999 99999999999999999999999 999999999999999999999999999999981 22367999
Q ss_pred ccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCC
Q 011214 384 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVS 463 (491)
Q Consensus 384 p~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~ 463 (491)
|+|||||| |+||+ ++||+|+|||++|||.|- ++ ++++|++||+||.+++..|.+|.||| |
T Consensus 284 PiHGSAPD-----iagk~-kvNPlaTILSAamlLkyg--Ln----~pkeakaIEdAV~kvLd~G~rTgDlg----g---- 343 (363)
T KOG0786|consen 284 PIHGSAPD-----IAGKD-KVNPLATILSAAMLLKYG--LN----EPKEAKAIEDAVVKVLDKGFRTGDLG----G---- 343 (363)
T ss_pred cCCCCCCC-----cCCCC-ccChHHHHHHHHHHHHhc--CC----ChhhHHHHHHHHHHHHhccccccccC----C----
Confidence 99999999 99999 999999999999999882 33 67899999999999999999999998 7
Q ss_pred CccccCHHHHHHHHHHHHHhhh
Q 011214 464 REFYLNTEEFIDAVATNLGAKL 485 (491)
Q Consensus 464 ~~~~~sT~ef~daV~~~l~~~~ 485 (491)
..+|.+.+++|.+.+.+.+
T Consensus 344 ---~~st~~~~kav~EEv~Kil 362 (363)
T KOG0786|consen 344 ---PGSTLVGCKAVGEEVLKIL 362 (363)
T ss_pred ---CCcchhhHHHHHHHHHHhc
Confidence 4777777888777776654
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=97.65 E-value=0.002 Score=70.89 Aligned_cols=221 Identities=20% Similarity=0.253 Sum_probs=129.7
Q ss_pred ccCCccccccee--EcCCCceeeEecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCC-EEEEe
Q 011214 212 AFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLST 288 (491)
Q Consensus 212 ntEg~Y~g~e~~--~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~k-Vt~v~ 288 (491)
+.-.+|...|.. +...|+..++ .+.|.--.+ ++...++++..+-.-+.-|+-.++.|.+.||..+.+ |.-.|
T Consensus 411 qKAEEYGSHdKTFe~~~~G~v~vv--d~~G~vl~e---h~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD 485 (735)
T PF03971_consen 411 QKAEEYGSHDKTFEIPADGTVRVV--DESGEVLME---HEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLD 485 (735)
T ss_dssp TT-GGGG-GGGEEE-SSSEEEEEE--ETTS-EEEE---EEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--
T ss_pred hhhHHhCCCCcceECCCCcEEEEE--eCCCCEEEE---eeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecC
Confidence 345678777744 4444444444 333432222 233346677655566788999999999999999865 55566
Q ss_pred CCccccccchHHHHHHHHHHHhhhccccccCCeEEeeEeH-HHHHHHH--HhCCCCeeeeccCCccchhhhhhhhh-cC-
Q 011214 289 KNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLI-DDMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG-FG- 363 (491)
Q Consensus 289 KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~lV-Da~a~~L--Vk~P~~FVIvt~NlfGDILSDlaA~l-~G- 363 (491)
+.-. -| +++..+| ++|=.++.-.|+.+.-+-- |++-.-| ++.-..-+-||.|..=|+|+||.--| .|
T Consensus 486 ~~RA---HD---a~lI~kV--~~yL~~hdt~gldi~Im~P~~A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGT 557 (735)
T PF03971_consen 486 ENRA---HD---AELIKKV--EKYLKDHDTSGLDIRIMSPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGT 557 (735)
T ss_dssp TTSH---HH---HHHHHHH--HHHHTTS--TT--EEEE-HHHHHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-
T ss_pred CCCc---cH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhcc
Confidence 5432 12 4556666 2565455555788877754 5554333 34444448899999999999998765 12
Q ss_pred Cccccccc-ccCCCCcceeeec-cccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHH
Q 011214 364 SLGLMTSV-LLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACI 441 (491)
Q Consensus 364 slGlapSa-nig~d~~~~~fEp-~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~ 441 (491)
|-=|..=. .++ .| ++||. +.||||+|..|.+.-.--.=+.+|-+||.+.-|+|+++..+|+.-.-.|+.|.+|+.
T Consensus 558 SAKMLSIVPLm~-GG--GLFETGAGGSAPKHVqQf~eEnhLRWDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~ 634 (735)
T PF03971_consen 558 SAKMLSIVPLMN-GG--GLFETGAGGSAPKHVQQFVEENHLRWDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATG 634 (735)
T ss_dssp STTSEEEEEBTT-S---EEEES-SS---HHHHHHHCCCS-----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred chhhhhhhhccc-CC--ceeccCCCCCccHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 21111111 122 23 58999 568999999886543222567899999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 011214 442 EAVETGK 448 (491)
Q Consensus 442 ~~l~~G~ 448 (491)
+.|++++
T Consensus 635 ~~L~n~k 641 (735)
T PF03971_consen 635 KFLENNK 641 (735)
T ss_dssp HHHHTT-
T ss_pred HHHhCCC
Confidence 9999875
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=97.35 E-value=0.0042 Score=68.48 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=125.7
Q ss_pred CCceEEEEeeCHHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeEEeeEe-HH
Q 011214 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-ID 329 (491)
Q Consensus 252 ~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~k-Vt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~l-VD 329 (491)
.++++..+---+.-|+-.++.|.+.||..+.+ |.-.|+.-. -| +++..+|- .|=.+..-.|+.+.-+- ++
T Consensus 452 ~GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV~--~yL~~hdt~gldi~Im~p~~ 523 (741)
T TIGR00178 452 AGDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA---HD---AQLIKKVE--TYLKDHDTEGLDIQILSPVE 523 (741)
T ss_pred CCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hH---HHHHHHHH--HHHHhcCCCCCceEeeCHHH
Confidence 35565444344667899999999999999865 555555322 12 34444552 34333333466776664 45
Q ss_pred HHHHHH--HhCCCCeeeeccCCccchhhhhhhhhcCCccccccc-------ccCCCCcceeeec-cccccccchhhccCC
Q 011214 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSV-------LLSSDGKTLEAEA-AHGTVTRHFRLHQKG 399 (491)
Q Consensus 330 a~a~~L--Vk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSa-------nig~d~~~~~fEp-~HGSAPd~~~~~iaG 399 (491)
++-.-| +++-..-+-||.|..=|+|+||.--|= |-+|| .++ .| ++||. +.||||+|..|.+.-
T Consensus 524 A~~~slerir~G~dTISVTGNVLRDYLTDLFPILE----lGTSAKMLSIVPLm~-GG--GLFETGAGGSAPKHVqQf~eE 596 (741)
T TIGR00178 524 ATRFSLARIRRGEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMA-GG--GLFETGAGGSAPKHVQQFLEE 596 (741)
T ss_pred HHHHHHHHHHcCCCeEEEechhHHhhhcchhhhhh----hccchhhhhhhhccc-CC--ceecCCCCCCccHHHHHHHHc
Confidence 543333 445444588999999999999987652 22333 122 22 58999 568999998876532
Q ss_pred CCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCC
Q 011214 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (491)
Q Consensus 400 k~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~ 448 (491)
.--.=+.+|-+||.+.-|+|+++..+|+.-.-.|+.|.+|+.+.|++++
T Consensus 597 nhLRWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~k 645 (741)
T TIGR00178 597 NHLRWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNK 645 (741)
T ss_pred CcccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 2225678999999999999999998899999999999999999998875
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=96.34 E-value=0.065 Score=58.31 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=120.2
Q ss_pred CCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEE-EeCCccccccchHHHHHHHHHHHhhhccccccCCeEEeeE-eHH
Q 011214 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL-STKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LID 329 (491)
Q Consensus 252 ~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~-v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~-lVD 329 (491)
.++++..+.....-++-.++.|.+.||..+-++.+ .|-.-. .| ++....|- .|=.+-.-.|+.+.-+ .+.
T Consensus 454 ~gDiwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~Ra---hd---~~li~kV~--~yLkdhdt~GldI~Ilsp~e 525 (744)
T COG2838 454 AGDIWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYRA---HD---KELIKKVE--AYLKDHDTNGLDIQILSPVE 525 (744)
T ss_pred cccHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcCcc---ch---HHHHHHHH--HHhhhcCCCCcceEEecHHH
Confidence 34455445566778999999999999998866433 332111 12 34444442 3432222235554444 344
Q ss_pred HHHHHH--HhCCCCeeeeccCCccchhhhhhhhhcCCcccccccc------cCCCCcceeeecc-ccccccchhhccCCC
Q 011214 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVL------LSSDGKTLEAEAA-HGTVTRHFRLHQKGQ 400 (491)
Q Consensus 330 a~a~~L--Vk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSan------ig~d~~~~~fEp~-HGSAPd~~~~~iaGk 400 (491)
+|-.-| +++-..-+-||.|..-|+|+||.--+- |-+|+- +=..| +|||.. .||||+|..|-..-.
T Consensus 526 a~~~sl~rl~~G~DtIsvTGNvLRDYlTDLFPIlE----LGTSAKMLSiVPlmaGG--gmfETGAGGSAPKhVqQ~~eEN 599 (744)
T COG2838 526 AMRYSLERLRRGEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMAGG--GMFETGAGGSAPKHVQQLVEEN 599 (744)
T ss_pred HHHHHHHHHHcCCceeEecchHHHHHHhhhhhHhh----cccccchheeeeeccCC--ceeecCCCCCCcHHHHHHHHhc
Confidence 443333 445445588999999999999987652 223332 11123 589984 689999987753222
Q ss_pred CCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCC
Q 011214 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (491)
Q Consensus 401 ~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~ 448 (491)
--.=+.++-+|+.+.-|+|+|..-+|..-.-.|+.|..|..+.|++.+
T Consensus 600 hLRWDSLGEFLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 600 HLRWDSLGEFLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 224578899999999999999888888888899999999999998654
No 35
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=88.72 E-value=0.21 Score=53.69 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=19.2
Q ss_pred CCCeEEEeccc-CCccccccee
Q 011214 203 KKPICIGRHAF-GDQYRATDTV 223 (491)
Q Consensus 203 ~~divIvREnt-Eg~Y~g~e~~ 223 (491)
.+|++|+|||| ||+|++.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 49999999999 9999999863
No 36
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=88.55 E-value=0.31 Score=50.48 Aligned_cols=135 Identities=17% Similarity=0.054 Sum_probs=63.5
Q ss_pred eeCHHHHHHHHHHHHHHHHh-CC--CCEEEEeCCccccccchHHH-H----HHHHHHHhhhccccccCCeEEeeEe-HHH
Q 011214 260 YNVDESIRAFAESSMSLAFS-KK--WPLYLSTKNTILKKYDGRFK-D----IFQQVYEERWRQKFEEHSIWYEHRL-IDD 330 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~-r~--~kVt~v~KaNIlk~tdglfr-~----i~~eVa~~eYp~~f~~~~I~~e~~l-VDa 330 (491)
.+|.+.+.+.++...+.-++ -+ ++-..|-==|==.--.|+|= | |.-.|.+.+-. ||.+.-=+ -|.
T Consensus 151 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~------gi~v~GP~paDt 224 (298)
T PF04166_consen 151 LITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAE------GIDVFGPYPADT 224 (298)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHT------THEEEEEE-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhC------CCceECCCccHH
Confidence 47888888888877665555 33 34333333333221245553 1 11112111112 66665443 455
Q ss_pred HHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhH
Q 011214 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (491)
Q Consensus 331 ~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~ 409 (491)
+-.+-.+ +.| ++|+ ||=| .+---+=-+++--+.|+.-.--..---|.||||-| ||||| +|||.++
T Consensus 225 ~F~~~~~--~~fD~vva--MYHD----QGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfD-----IAGkg-~A~~~s~ 290 (298)
T PF04166_consen 225 VFGKANR--GKFDAVVA--MYHD----QGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFD-----IAGKG-IADPSSM 290 (298)
T ss_dssp HTSHHHH--TT-SEEEE--SSHH----HHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CC-----GTTTT-TS-THHH
T ss_pred hhhcchh--ccCCEEEE--eecc----cCccceeecccccceEEecCCCeeeecCCCCchhh-----hhCCC-CCChHHH
Confidence 5444433 466 4444 3433 22111112233344554311001122589999999 99999 9999999
Q ss_pred HHHHH
Q 011214 410 IFAWT 414 (491)
Q Consensus 410 IlS~a 414 (491)
+-|.-
T Consensus 291 ~~Ai~ 295 (298)
T PF04166_consen 291 IEAIK 295 (298)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98744
No 37
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=86.90 E-value=0.44 Score=49.93 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=70.4
Q ss_pred eeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSKK--W-PL-YLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r~--~-kV-t~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa~ 331 (491)
.+|.+.+.+.++...+.-++-+ + |+ .+.=..+.= -.|+| +|--+.+. -++... .|+.++ -.=-|.+
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAi~~~~~----~G~~v~GP~paDt~ 250 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAG--ENGLFGDEEIRIVTPAIEAMRA----KGMDVYGPCPPDTV 250 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchhh
Confidence 4788988888888777555333 2 33 222222332 25777 44333332 012211 133332 2223444
Q ss_pred HHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchhH
Q 011214 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (491)
Q Consensus 332 a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA~ 409 (491)
-.+-.+ ++| ++|| ||=| .+---+=.+++-.+.|+.-. .++ ---|-||||-| ||||| +|||.++
T Consensus 251 F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlG-LP~iRTS~DHGTAfD-----IAGkG-~A~~~S~ 315 (326)
T PRK03371 251 FLQAYE--GQYDMVVA--MYHD----QGHIPLKLLGFYDGVNITAG-LPFIRTSADHGTAFD-----IAWTG-KAKSESM 315 (326)
T ss_pred cccccc--cCCCEEEE--cccc----ccchhheecccccceEEecC-CCeeEecCCCCchhh-----hhcCC-cCCHHHH
Confidence 333322 457 4444 3433 22111223344456665421 111 12488999999 99999 9999999
Q ss_pred HHHHHHH
Q 011214 410 IFAWTRG 416 (491)
Q Consensus 410 IlS~amm 416 (491)
+-|.-++
T Consensus 316 ~~Ai~lA 322 (326)
T PRK03371 316 AVSIKLA 322 (326)
T ss_pred HHHHHHH
Confidence 9885444
No 38
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=86.46 E-value=0.47 Score=49.84 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=70.1
Q ss_pred eeCHHHHHHHHHHHHHHHHhCC--C-CEEEEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMV 332 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r~--~-kVt~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa~a 332 (491)
.+|.+.+.+.++.+-+.-++.+ + |+- |-==|==.--.|+| +|--+.+. -++.. +.|+.++ -.=-|.+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIa-V~gLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt~F 252 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIA-VCGLNPHAGEGGHFGREEIDIIIPALEELR----AEGINLVGPLPADTLF 252 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEE-EEeeCCCCCCCCCCCHHHHHHHHHHHHHHH----hCCCCcCCCCCchhhc
Confidence 4889999998888887665334 2 332 22223222124666 32222211 01111 1133332 22234443
Q ss_pred HHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchhHH
Q 011214 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (491)
Q Consensus 333 ~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA~I 410 (491)
.+-.+ +.| ++|| ||=| .+--=+=-+++-.+.|+.-. .++ ---|-||||-| ||||| +|||.+++
T Consensus 253 ~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlG-LPiiRTS~DHGTAfD-----IAGkg-~A~~~S~~ 317 (332)
T PRK00232 253 QPAYL--GDADAVLA--MYHD----QGLPVLKYLGFGRGVNITLG-LPFIRTSVDHGTALD-----LAGKG-IADVGSFI 317 (332)
T ss_pred ccccc--CCCCEEEE--Cccc----ccchhheecccCcceEEecC-CCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 33333 456 4444 3433 21111223344455665421 111 12488999999 99999 99999999
Q ss_pred HHHHHHH
Q 011214 411 FAWTRGL 417 (491)
Q Consensus 411 lS~ammL 417 (491)
-|.-++.
T Consensus 318 ~Ai~lA~ 324 (332)
T PRK00232 318 TALNLAI 324 (332)
T ss_pred HHHHHHH
Confidence 8855544
No 39
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=85.84 E-value=0.53 Score=49.47 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred eeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSKK--W-PL-YLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r~--~-kV-t~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa~ 331 (491)
.+|.+.+.+.++.+.+.-+.-+ + |+ .+.=..+.= -.|+| +|--+.+. -++.. +.++.++ -.=-|.+
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAI~~~~----~~g~~v~GP~paDt~ 251 (332)
T PRK03743 178 YVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSG--EHGLFGDEEVDEIIPAVEAAQ----EMGINVEGPVPADSV 251 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhh
Confidence 4899999999998888666433 2 33 222222332 25677 33322221 01111 1133332 2233444
Q ss_pred HHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHH
Q 011214 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (491)
Q Consensus 332 a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~I 410 (491)
-.+..+ +.| ++|| ||=| .+---+=-+++-.+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 252 F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkg-~A~~~S~~ 317 (332)
T PRK03743 252 FHLALQ--GRYDAVLS--LYHD----QGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFD-----IAGTG-KASSVSME 317 (332)
T ss_pred cccccc--cCCCEEEE--cccc----cCChhheecccCCceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 333333 456 4444 3433 21111223344455665421101112488999999 99999 99999999
Q ss_pred HHHHHHHHh
Q 011214 411 FAWTRGLEH 419 (491)
Q Consensus 411 lS~ammL~h 419 (491)
-|.-++.+.
T Consensus 318 ~Ai~lA~~~ 326 (332)
T PRK03743 318 EAILLAAKY 326 (332)
T ss_pred HHHHHHHHH
Confidence 886555443
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=85.72 E-value=0.54 Score=49.35 Aligned_cols=138 Identities=9% Similarity=-0.068 Sum_probs=73.1
Q ss_pred eeCHHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDD 330 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-~--~-kVt-~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa 330 (491)
.+|.+.+.+.++...+.-+++ + + |+- +.=..+.= -+|+| +|-.+.+. -++.. +.|+.++ -.=-|.
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAi~~~~----~~Gi~v~GP~paDt 246 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAG--ENGYLGREEIDVIEPALARAR----AAGIDARGPYPADT 246 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHHH----HCCCCccCCCCchh
Confidence 489999999999988866632 3 2 332 22222232 25777 43332221 01111 1133322 233455
Q ss_pred HHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchh
Q 011214 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIA 408 (491)
Q Consensus 331 ~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA 408 (491)
+-.+..+ +.| ++|| ||=| .+---+=-+++-.+.|+.-. .++ ---|-||||-| ||||| +|||.+
T Consensus 247 ~F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlG-LP~iRTSvDHGTAfD-----IAGkg-~A~~~S 311 (329)
T PRK01909 247 LFQPRYL--EDADCVLA--MFHD----QGLPVLKYATFGEGINVTLG-LPIIRTSVDHGTALD-----LAGTG-RADPGS 311 (329)
T ss_pred hcccccc--cCCCEEEE--cccc----ccchhheecccCcceEEecC-CCeeEeCCCCcchhh-----hhcCC-CCCHHH
Confidence 5444433 356 4444 3433 22222223444456665421 111 12488999999 99999 999999
Q ss_pred HHHHHHHHHH
Q 011214 409 SIFAWTRGLE 418 (491)
Q Consensus 409 ~IlS~ammL~ 418 (491)
++-|.-++.+
T Consensus 312 ~~~Ai~lA~~ 321 (329)
T PRK01909 312 MIAAIDTAVT 321 (329)
T ss_pred HHHHHHHHHH
Confidence 9988555443
No 41
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=84.98 E-value=0.61 Score=49.23 Aligned_cols=142 Identities=12% Similarity=-0.021 Sum_probs=72.1
Q ss_pred eeCHHHHHHHHHHHHHHHHh-CC--C-CEEEEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFS-KK--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~-r~--~-kVt~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa~ 331 (491)
.+|.+.+.+.++.+.+.-++ -+ + |+- |-==|==.--.|+| +|--+.+. -++...+. .++.++ -.=-|.+
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIa-V~GLNPHAGE~G~~G~EE~~iI~PAIe~~r~~g--~g~~v~GP~paDt~ 256 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIA-IAGLNPHAGEQGQLGTEEKDWLIPWLESWRQKN--PDIQLLGPIPPDTC 256 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEE-EEeeCCCCCCCCCCcHHHHHHHHHHHHHHHhcC--CCceeeCCCCchhh
Confidence 47888888888877775553 23 2 332 22122222124666 33222211 01221100 024443 2334665
Q ss_pred HHHHHhC------CCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCc
Q 011214 332 VAYAIKS------EGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETS 403 (491)
Q Consensus 332 a~~LVk~------P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~i 403 (491)
-.+..+. .+.| ++|| ||=| .+--=+=-+++-.+.|+.-. .++ ---|-||||-| ||||| +
T Consensus 257 F~~~~~~~~~~~~~~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlG-LP~iRTS~DHGTAfD-----IAGkg-~ 323 (345)
T PRK02746 257 WVSPAQAWYGKGVAEAPDGYLA--LYHD----QGLIPVKLMAFDRAVNTTIG-LPFIRTSPDHGTAFD-----IAGKG-I 323 (345)
T ss_pred ccccccccccccccCCCCEEEE--Cccc----CCChhheeeccCcceEEecC-CCeeEeCCCCcchhh-----hhcCC-C
Confidence 5554441 1467 5555 3444 21111223344456665421 111 12488999999 99999 9
Q ss_pred cCchhHHHHHHHHH
Q 011214 404 TNSIASIFAWTRGL 417 (491)
Q Consensus 404 ANPiA~IlS~ammL 417 (491)
|||.+|+-|.-++.
T Consensus 324 A~~~S~~~Ai~lA~ 337 (345)
T PRK02746 324 ARPQSMKAAIKLAW 337 (345)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998855443
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=84.96 E-value=0.61 Score=49.07 Aligned_cols=138 Identities=17% Similarity=0.070 Sum_probs=70.3
Q ss_pred eeCHHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDD 330 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-~--~-kVt-~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa 330 (491)
.+|.+.+.+.++.+.+.-+++ + + |+- +.=..+.= -.|+| +|--+.+. -++.. +.++.++ -.=-|.
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAI~~~~----~~Gi~v~GP~paDt 255 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAG--EGGALGREDIDIIAPAIEQLR----AEGIDARGPLPADT 255 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHHH----HCCCCccCCCCchh
Confidence 488999999999888866633 3 2 342 22222232 25676 33322221 01111 1133221 222344
Q ss_pred HHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchh
Q 011214 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIA 408 (491)
Q Consensus 331 ~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA 408 (491)
+-.+-.+ +.| ++|+ ||=| .+---+=.+|+-.+.|+.-. -++ ---|-||||-| ||||| +|||.+
T Consensus 256 ~F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlG-LP~iRTSvDHGTAfD-----IAGkg-~A~~~S 320 (336)
T PRK05312 256 MFHAAAR--ATYDAAIC--MYHD----QALIPIKTLDFDGGVNVTLG-LPFIRTSPDHGTAFD-----IAGKG-IARPDS 320 (336)
T ss_pred hcccccc--cCCCEEEE--cccc----cCChhheecccCcceEEecC-CCeeEeCCCCcchhh-----hhcCC-CCCHHH
Confidence 4333222 356 4444 3433 21111222344455665421 111 12478999999 99999 999999
Q ss_pred HHHHHHHHHH
Q 011214 409 SIFAWTRGLE 418 (491)
Q Consensus 409 ~IlS~ammL~ 418 (491)
++-|.-++.+
T Consensus 321 ~~~Ai~lA~~ 330 (336)
T PRK05312 321 LIAALRLAAQ 330 (336)
T ss_pred HHHHHHHHHH
Confidence 9988555443
No 43
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=84.56 E-value=0.66 Score=48.51 Aligned_cols=136 Identities=13% Similarity=0.007 Sum_probs=68.4
Q ss_pred eeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCccccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSK-K--W-PL-YLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDD 330 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-~--~-kV-t~v~KaNIlk~tdglf-r~i~~eVa--~~eYp~~f~~~~I~~e-~~lVDa 330 (491)
.+|.+.+.+-++.+.+.-++. + + |+ .+.=..+.= -.|+| +|--+.+. -++.. +.++.++ ..--|.
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt 243 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAG--EGGHLGREEIDIIIPALEALR----AEGIDLIGPLPADT 243 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchh
Confidence 478999999888888766633 3 2 34 222222332 24666 33222221 01111 1133322 222344
Q ss_pred HHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchh
Q 011214 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIA 408 (491)
Q Consensus 331 ~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA 408 (491)
+-.+-.+ +.| ++|| ||=| .+--=+=-+|+-.+.|+.-. .++ ---|-||||-| ||||| +|||.+
T Consensus 244 ~F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlG-LPiiRTS~DHGTAfD-----IAGkg-~A~~~S 308 (320)
T TIGR00557 244 LFHPAAL--AKYDAVLA--MYHD----QGLIPLKYLGFDEGVNVTLG-LPFIRTSPDHGTAFD-----IAGKG-KADPGS 308 (320)
T ss_pred hcccccc--cCCCEEEE--Cccc----ccchhheecccCcceEEecC-CCeeEeCCCCcchhh-----hhcCC-CCCHHH
Confidence 3333222 456 4444 3433 21111223344445564421 111 12488999999 99999 999999
Q ss_pred HHHHHHHH
Q 011214 409 SIFAWTRG 416 (491)
Q Consensus 409 ~IlS~amm 416 (491)
++-|.-++
T Consensus 309 ~~~Ai~~A 316 (320)
T TIGR00557 309 LIAAIKLA 316 (320)
T ss_pred HHHHHHHH
Confidence 98874443
No 44
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=82.85 E-value=1.1 Score=46.83 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=31.6
Q ss_pred cccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchhHHHHHHHH
Q 011214 365 LGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRG 416 (491)
Q Consensus 365 lGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~amm 416 (491)
+|+--+.|+.-.- +| ---|-||||-| ||||| +|||.+++-|..++
T Consensus 277 l~Fd~~VNvtlGL-PfiRTS~DHGTAfD-----iAgkG-iA~~~S~~~Ai~lA 322 (332)
T COG1995 277 LGFDRGVNVTLGL-PFIRTSVDHGTAFD-----IAGKG-IADPGSLIAAIKLA 322 (332)
T ss_pred hccccceEEecCC-CeeeecCCccchhh-----hhcCC-cCCchHHHHHHHHH
Confidence 3455567765321 11 22488999999 99999 99999999774433
No 45
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=82.85 E-value=0.81 Score=49.37 Aligned_cols=9 Identities=11% Similarity=-0.138 Sum_probs=4.9
Q ss_pred CchhHHHHH
Q 011214 405 NSIASIFAW 413 (491)
Q Consensus 405 NPiA~IlS~ 413 (491)
-..||+|-+
T Consensus 336 lS~ammL~~ 344 (410)
T PLN00103 336 FAWSRGLAH 344 (410)
T ss_pred HHHHHHHHH
Confidence 344566655
No 46
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=82.08 E-value=1 Score=46.91 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=45.4
Q ss_pred eEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCC
Q 011214 325 HRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQET 402 (491)
Q Consensus 325 ~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~ 402 (491)
-.=-|.+-.+-.+ +.| ++|| ||=| .+--=+=.+++-.+.|+.-. -++ ---|.||||-| |||||.
T Consensus 221 P~paDt~F~~~~~--~~~D~vla--MYHD----QGlip~K~l~F~~gVnvTlG-LP~iRTSpDHGTAfD-----IAGkg~ 286 (307)
T PRK03946 221 PLVPDSAFTPNKR--KKFNYYVA--MYHD----QGLAPLKALYFDESINVSLN-LPILRTSVDHGTAFD-----IAYKNA 286 (307)
T ss_pred CcCchhhcccccc--cCCCEEEE--Cccc----cCchhheeeccCcceEEecC-CCEeEecCCCCchhh-----hcCCCC
Confidence 4444555444323 467 5554 3433 21111223344455665421 111 12488999999 999988
Q ss_pred ccCchhHHHHHHHHHH
Q 011214 403 STNSIASIFAWTRGLE 418 (491)
Q Consensus 403 iANPiA~IlS~ammL~ 418 (491)
+|||.+|+-|.-++.+
T Consensus 287 ~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 287 KANTKSYLNAIKYAIN 302 (307)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999988555443
No 47
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=68.43 E-value=17 Score=41.27 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=75.7
Q ss_pred ccCCccccccee-EcCCCceeeEecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Q 011214 212 AFGDQYRATDTV-IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKN 290 (491)
Q Consensus 212 ntEg~Y~g~e~~-~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~Ka 290 (491)
..+|+|...--+ +...++..+.|...+|....-.+--....++|.++.+++.+....|.+..++-|++.+--..+=-|+
T Consensus 177 ~~gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~~vLK~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSlHlKA 256 (741)
T TIGR00178 177 DNGDFYGSEKSATIDAAGSVKIELIAKDGSSTVLKAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSLHLKA 256 (741)
T ss_pred CCCCCcCCceeEEecCCCeEEEEEEcCCCCEEEecCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEeeehh
Confidence 345666554433 3566678888887776422100001112356778888999999999999999999887544444599
Q ss_pred ccccccchH----H-HHHHHHHHHhhhccccccCCeEEeeEeHH
Q 011214 291 TILKKYDGR----F-KDIFQQVYEERWRQKFEEHSIWYEHRLID 329 (491)
Q Consensus 291 NIlk~tdgl----f-r~i~~eVa~~eYp~~f~~~~I~~e~~lVD 329 (491)
+-||.+|-. . +--|++|+ ++|.+.|++.||..+.=+-|
T Consensus 257 TMMKVSDPIiFGhaV~vffkdvF-~k~~~~~~~~Gvn~nnGlgd 299 (741)
T TIGR00178 257 TMMKVSDPIMFGHAVREFYKDAF-AKHAEVLKQLGVDVNNGIGD 299 (741)
T ss_pred eeecccCceehhHHHHHHHHHHH-HHHHHHHHHcCCCcCcchHH
Confidence 999999852 2 22355666 36777777778766654444
No 48
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=59.35 E-value=14 Score=41.78 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=72.2
Q ss_pred CCCCCCCCCC--eEEEecccCCcccccc-eeEcCCCceeeEecCCCCCCCceec-cccccCCceEEEEeeCHHHHHHHHH
Q 011214 196 PRIVPGWKKP--ICIGRHAFGDQYRATD-TVIKGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAE 271 (491)
Q Consensus 196 p~~~~~~~~d--ivIvREntEg~Y~g~e-~~~~~~~~~~l~~~~~~g~~~~~~~-~~~~~~~~va~~~~~Tr~~ieRiar 271 (491)
|.....|..| --|--...+|+|...- ..+..+++..+.|...+|.. +.+. .-....++|.++.+++.+..+.|.+
T Consensus 155 PH~mg~Ws~~Skt~Va~M~~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~ 233 (735)
T PF03971_consen 155 PHSMGAWSKDSKTHVAHMSGGDFYGNEKSVTVDKATTVRIEFVGKDGSV-TVLKEGLPLLAGEVIDATFMSAKALRAFYE 233 (735)
T ss_dssp --------TT---EEE--SSSSHHHH-EEEE-SSSEEEEEEEEETTS-E-EEEEEEEEE-TT-EEEEEEE-HHHHHHHHH
T ss_pred CCcCCCCCcccccceeecCCCCCCCCceEEEecCCCeEEEEEEcCCCCE-EeccCCCcCCCCcEeehhhccHHHHHHHHH
Confidence 4333346433 2333444566665433 33456677778888777642 1111 1111246688888899999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCccccccchH-HH----HHHHHHHHhhhccccccCCeEEeeEeH
Q 011214 272 SSMSLAFSKKWPLYLSTKNTILKKYDGR-FK----DIFQQVYEERWRQKFEEHSIWYEHRLI 328 (491)
Q Consensus 272 ~AFe~A~~r~~kVt~v~KaNIlk~tdgl-fr----~i~~eVa~~eYp~~f~~~~I~~e~~lV 328 (491)
..++-|++.+--..+=-|++-||.+|-. |- --|++|+ ++|.+.|++.||..+.=+-
T Consensus 234 ~~i~~AK~~~vLfSlHlKATMMKVSDPIiFGhaV~v~f~~vF-~k~~~~~~~~Gvn~nnGlg 294 (735)
T PF03971_consen 234 EQIEDAKEEGVLFSLHLKATMMKVSDPIIFGHAVKVFFKDVF-EKHGDTFKELGVNPNNGLG 294 (735)
T ss_dssp HHHHHHHHHT-EEEE-B-TTTSTTHHHHHHHHHHHHHCHHHH-HHCHHHHHHCT-SCCCHHH
T ss_pred HHHHHHHhcCCeEEeeehhhhhhccCccHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccCHH
Confidence 9999999887644444599999999854 22 2256667 3777788888886654443
No 49
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=56.03 E-value=6.4 Score=42.67 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=17.3
Q ss_pred CCCeEEEeccc-CCcccccc
Q 011214 203 KKPICIGRHAF-GDQYRATD 221 (491)
Q Consensus 203 ~~divIvREnt-Eg~Y~g~e 221 (491)
.+|++|+|||| ||+|.+.+
T Consensus 143 ~id~vi~rent~e~~y~~~~ 162 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPAD 162 (413)
T ss_pred ceEEEEecCCEEEEEEecCC
Confidence 49999999999 99999983
No 50
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=54.47 E-value=13 Score=41.12 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=8.5
Q ss_pred HHHHHHHHHhCCC
Q 011214 328 IDDMVAYAIKSEG 340 (491)
Q Consensus 328 VDa~a~~LVk~P~ 340 (491)
+-+++++++=+.+
T Consensus 346 lSDl~A~l~GsLG 358 (483)
T PLN03065 346 QSDLLAQGFGSLG 358 (483)
T ss_pred hhHHHHHhcCchh
Confidence 5566777766655
No 51
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=47.39 E-value=50 Score=34.17 Aligned_cols=112 Identities=24% Similarity=0.290 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeEEeeEeHHHHHHHHHhCCCCe
Q 011214 263 DESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY 342 (491)
Q Consensus 263 r~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F 342 (491)
++.+-+.+..-|+|++.++.++.+ | .||||.- ++-| .+-+.++
T Consensus 114 dp~~~k~i~~iley~~~~dvP~VI-D-------aDGL~Lv-------~q~~----------------------e~l~~~~ 156 (306)
T KOG3974|consen 114 DPAILKEIAKILEYLRGKDVPLVI-D-------ADGLWLV-------EQLP----------------------ERLIGGY 156 (306)
T ss_pred CHHHHHHHHHHHHHHhcCCCcEEE-c-------CCceEeh-------hhch----------------------hhhhccC
Confidence 345677777888999998777654 2 7999952 1333 1233455
Q ss_pred --eeeccCC------ccchh---------hhhhhhhcCCcccc--ccc-ccCCCCcceeeeccccccccchhhccCCCC-
Q 011214 343 --VWACKNY------DGDVQ---------SDLLAQGFGSLGLM--TSV-LLSSDGKTLEAEAAHGTVTRHFRLHQKGQE- 401 (491)
Q Consensus 343 --VIvt~Nl------fGDIL---------SDlaA~l~GslGla--pSa-nig~d~~~~~fEp~HGSAPd~~~~~iaGk~- 401 (491)
||+|||. ++-++ +-|++++.+=.=+- ++- -+.++..+ ..-+.-||--+ .-|||
T Consensus 157 ~~viLTPNvvEFkRLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev-~~~s~eGs~kR-----cGGQGD 230 (306)
T KOG3974|consen 157 PKVILTPNVVEFKRLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEV-RVCSTEGSLKR-----CGGQGD 230 (306)
T ss_pred ceeeeCCcHHHHHHHHHHhhccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCee-EEccCCCCccc-----cCCCcc
Confidence 8888883 33333 23444441100000 111 12333311 12344677777 88998
Q ss_pred CccCchhHHHHHHHHH
Q 011214 402 TSTNSIASIFAWTRGL 417 (491)
Q Consensus 402 ~iANPiA~IlS~ammL 417 (491)
..+-.+|+++||+-.|
T Consensus 231 iLaGsla~fl~w~k~~ 246 (306)
T KOG3974|consen 231 ILAGSLATFLSWAKLL 246 (306)
T ss_pred hhhhHHHHHHHHHHhc
Confidence 6788899999998733
No 52
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=44.81 E-value=96 Score=29.83 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=51.5
Q ss_pred cEEEEcC----CccHHHHHHHHHHHHhcCCCceeEEE-Eecchhhhh--hcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 87 PIVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRD--ATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 87 ~I~vi~G----DgIGpeI~~~~~~~l~~~~~~i~~~~-~dlG~~~~~--~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
+|++|-| .+-..-+.+.+.+.+...+.++++.. .++..+... ..+.+--.+..+.++++|+++++ +|.+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~---tP~Y- 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA---TPVY- 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE---CCcc-
Confidence 4666666 36667777777777766666555332 122221111 12233345667888899999974 5765
Q ss_pred chhhhccccCCCCccHHHHhhcCce
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
|.|.-..|++-||..
T Consensus 78 ----------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ----------KASFSGALKTLLDLL 92 (191)
T ss_pred ----------CCCCCHHHHHHHHhC
Confidence 346668899999965
No 53
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=43.50 E-value=1.3e+02 Score=28.91 Aligned_cols=76 Identities=8% Similarity=-0.023 Sum_probs=50.4
Q ss_pred CccHHHHHHHHHHHHhcCCCceeEEEEe-c---chhhhh---h-cCCCCcHH----HHHHHHhcCeEEEccccCCCccch
Q 011214 94 DEMTRIIWQMIKDKLIFPYLDLDIKYYD-L---GILNRD---A-TDDKVTVE----SAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 94 DgIGpeI~~~~~~~l~~~~~~i~~~~~d-l---G~~~~~---~-tg~~lp~e----tl~aik~~da~LkGav~tP~~~~~ 161 (491)
+|-+..+.+++++-+.+.|.++++.... . ++...+ . ....++++ ..+.++++|++++|. |.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs---Pvy--- 86 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS---PVY--- 86 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC---Cee---
Confidence 8999999999998887778887766643 2 332222 1 22455544 455599999999864 543
Q ss_pred hhhccccCCCCccHHHHhhcCc
Q 011214 162 KEFGLKSMWRSPNGTIRNILNG 183 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdL 183 (491)
|.....+++.-+|-
T Consensus 87 --------~g~vsa~~K~fiDR 100 (207)
T COG0655 87 --------FGNVSAQMKAFIDR 100 (207)
T ss_pred --------cCCchHHHHHHHhh
Confidence 33445677877775
No 54
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=35.93 E-value=1.8e+02 Score=30.86 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHhCCCCeeeeccCCccchhh-hhhhhhcCCccccc-ccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHH
Q 011214 335 AIKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLMT-SVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (491)
Q Consensus 335 LVk~P~~FVIvt~NlfGDILS-DlaA~l~GslGlap-Sanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS 412 (491)
.+..+.+-.++.+||=||++. ++++...-.-|+-. ..-+++|-+. .+.....- -+| +| +++|-
T Consensus 92 av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~---~~~~~~~~--------RRG-lA---G~vlv 156 (331)
T PRK14481 92 AVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAV---EDSLYTQG--------RRG-VA---GTVFV 156 (331)
T ss_pred hccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccC---CCCccCCC--------CCc-hh---HHHHH
Confidence 455677778889999999985 67777777666543 3345566532 22222211 134 44 33332
Q ss_pred HH--HHHHhhcccCcchhHHHHHHHHHHHHHHHHH------------cCCCch-------hhhhhccC-CCCCCccccCH
Q 011214 413 WT--RGLEHRAKLDKNERLLHFVQKLEAACIEAVE------------TGKMTK-------DLAILVHG-PKVSREFYLNT 470 (491)
Q Consensus 413 ~a--mmL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~------------~G~~T~-------DLg~~~~G-~~~~~~~~~sT 470 (491)
.- -+....|. + |.+..+.-+++...+-. .|.-+. .+|.-+|| ++..|....+.
T Consensus 157 ~KiaGAaA~~G~-s----L~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~~~~a 231 (331)
T PRK14481 157 HKIAGAAAEAGA-S----LDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREKLKPA 231 (331)
T ss_pred HHHHHHHHhCCC-C----HHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCCCCCH
Confidence 11 11112221 1 44444444444443321 111121 24555788 46677778889
Q ss_pred HHHHHHHHHHHHhhh
Q 011214 471 EEFIDAVATNLGAKL 485 (491)
Q Consensus 471 ~ef~daV~~~l~~~~ 485 (491)
.++++.++++|...+
T Consensus 232 ~~l~~~m~~~ll~~~ 246 (331)
T PRK14481 232 DEIAEELLEKILEDL 246 (331)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999886643
No 55
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=34.09 E-value=2.1e+02 Score=26.63 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=47.5
Q ss_pred EEEEcC----CccHHHHHHHHHHHHhcCCCceeEEE-Eecchhhhhh--cCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 88 IVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRDA--TDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 88 I~vi~G----DgIGpeI~~~~~~~l~~~~~~i~~~~-~dlG~~~~~~--tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
|++|-| ++-...+.+++.+.+...+.+++... .++....... ...+--++..+.++++|+++++ +|.+
T Consensus 2 il~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~---sP~Y-- 76 (171)
T TIGR03567 2 VLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVA---TPVY-- 76 (171)
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEE---CCcc--
Confidence 445544 46777787877776655555544332 2232221111 1112225566777889999974 5764
Q ss_pred hhhhccccCCCCccHHHHhhcCce
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
|.|.-..|++-+|..
T Consensus 77 ---------~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 77 ---------KASYSGVLKALLDLL 91 (171)
T ss_pred ---------cCCCCHHHHHHHHhC
Confidence 345567888888854
No 56
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=29.05 E-value=43 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=18.2
Q ss_pred ecccEEEEcCC--ccHHHHHHHHH
Q 011214 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (491)
Q Consensus 84 ~~~~I~vi~GD--gIGpeI~~~~~ 105 (491)
|.++|++--|| ||||||+-.++
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 56789999999 99999966554
No 57
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=28.81 E-value=2.1e+02 Score=25.42 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=50.4
Q ss_pred cEEEEcC----CccHHHHHHHHHHHHhcCCCceeEEEEecch---hhhhh------cCCCCcHHHHHHHHhcCeEEEccc
Q 011214 87 PIVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKYYDLGI---LNRDA------TDDKVTVESAEATLKYNVAIKCAT 153 (491)
Q Consensus 87 ~I~vi~G----DgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~---~~~~~------tg~~lp~etl~aik~~da~LkGav 153 (491)
+|++|-| +|.+..+.+++++.+...++ +.+.+++.. ...+. .-..-.++..+.++++|+++++.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~--e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s- 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGA--EVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS- 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTE--EEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE-
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCC--EEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee-
Confidence 4555555 38899999999988866654 445555543 11111 11223466788889999999864
Q ss_pred cCCCccchhhhccccCCCCccHHHHhhcCce
Q 011214 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
|.+ |.++...+.+-||..
T Consensus 79 --P~y-----------~~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 79 --PVY-----------NGSVSGQLKNFLDRL 96 (152)
T ss_dssp --EEB-----------TTBE-HHHHHHHHTH
T ss_pred --cEE-----------cCcCChhhhHHHHHh
Confidence 543 234556777777754
No 58
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=27.54 E-value=3.2e+02 Score=29.06 Aligned_cols=131 Identities=20% Similarity=0.273 Sum_probs=71.4
Q ss_pred HHhCCCCeeeeccCCccchhh-hhhhhhcCCccccc-ccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHH
Q 011214 335 AIKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLMT-SVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (491)
Q Consensus 335 LVk~P~~FVIvt~NlfGDILS-DlaA~l~GslGlap-Sanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS 412 (491)
.+.++.+-.++.+||=||++. ++++...-.-|+-. ..-+++|-+. .+.....- -+| +| +++|-
T Consensus 93 av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~---~~~~~~~~--------RRG-lA---Gtv~v 157 (329)
T TIGR02363 93 AVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAV---EDSLYTAG--------RRG-VA---GTVFV 157 (329)
T ss_pred hccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccC---CCCccCCC--------Ccc-hh---HHHHH
Confidence 456777888899999999985 67767666556532 3335566532 12211111 134 44 33332
Q ss_pred HH--HHHHhhcccCcchhHHHHHHHHHHHHHHHHH----------cCC--Cch-------hhhhhccC-CCCCCccccCH
Q 011214 413 WT--RGLEHRAKLDKNERLLHFVQKLEAACIEAVE----------TGK--MTK-------DLAILVHG-PKVSREFYLNT 470 (491)
Q Consensus 413 ~a--mmL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~----------~G~--~T~-------DLg~~~~G-~~~~~~~~~sT 470 (491)
.- -+....|. + |.+..+.-+++...+-. -|. .+. .+|.-+|| ++..|.+..+.
T Consensus 158 ~KiaGAaAe~G~-s----L~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~~~~a 232 (329)
T TIGR02363 158 HKIAGAAAEKGA-S----LDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREKMKSS 232 (329)
T ss_pred HHHHHHHHhCCC-C----HHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCCCCCH
Confidence 11 11122221 1 44555555555444321 011 121 24555788 46777788888
Q ss_pred HHHHHHHHHHHHhhh
Q 011214 471 EEFIDAVATNLGAKL 485 (491)
Q Consensus 471 ~ef~daV~~~l~~~~ 485 (491)
.|+++.+++.|-..+
T Consensus 233 ~~l~~~l~~~l~~~~ 247 (329)
T TIGR02363 233 DEIADELLDKLLDDL 247 (329)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998886533
No 59
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=27.34 E-value=3.5e+02 Score=25.08 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=48.1
Q ss_pred cEEEEcC----CccHHHHHHHHHHHHh-cCCCceeEEEEecchh--hhh-h-cCCCCc---HHHHHHHHhcCeEEEcccc
Q 011214 87 PIVEMDG----DEMTRIIWQMIKDKLI-FPYLDLDIKYYDLGIL--NRD-A-TDDKVT---VESAEATLKYNVAIKCATI 154 (491)
Q Consensus 87 ~I~vi~G----DgIGpeI~~~~~~~l~-~~~~~i~~~~~dlG~~--~~~-~-tg~~lp---~etl~aik~~da~LkGav~ 154 (491)
+|++|-| ++....+.+.+.+.+. ..+++++ .+|+..- .+. . .....| .+..+.++++|++++ +
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~--~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi---~ 75 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPR--TIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVV---G 75 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEE--EEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEE---E
Confidence 3556655 3667777777776654 3355444 3444211 111 0 111245 356778889999997 5
Q ss_pred CCCccchhhhccccCCCCccHHHHhhcCce
Q 011214 155 TPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 155 tP~~~~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
||.+ |.|+-..|.+-||..
T Consensus 76 tP~Y-----------~~s~~~~LKn~lD~~ 94 (174)
T TIGR03566 76 SPVY-----------RGSYTGLFKHLFDLV 94 (174)
T ss_pred CCcC-----------cCcCcHHHHHHHHhc
Confidence 6765 345668899999953
No 60
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.46 E-value=1e+02 Score=32.42 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhc
Q 011214 271 ESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (491)
Q Consensus 271 r~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp 313 (491)
.||+|+|+ ||.+|.++-. +-..-..+.+|+. ++|+
T Consensus 64 ayA~eLAk-rG~nvvLIsR------t~~KL~~v~kEI~-~~~~ 98 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLISR------TQEKLEAVAKEIE-EKYK 98 (312)
T ss_pred HHHHHHHH-cCCEEEEEeC------CHHHHHHHHHHHH-HHhC
Confidence 47999998 7888988763 5556688889997 4785
No 61
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=26.21 E-value=57 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=24.2
Q ss_pred cEEEEcCC--ccHHHHHHHHHHHHhcCCCceeEEEEecch
Q 011214 87 PIVEMDGD--EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI 124 (491)
Q Consensus 87 ~I~vi~GD--gIGpeI~~~~~~~l~~~~~~i~~~~~dlG~ 124 (491)
+|+||+|. |||..+++.+++.+-. +++-+-+|.
T Consensus 1 ~I~VIDGQGGGiG~~iv~~lr~~~~~-----~~eI~AlGT 35 (131)
T PF12953_consen 1 RIAVIDGQGGGIGKQIVEKLRKELPE-----EVEIIALGT 35 (131)
T ss_pred CEEEEeCCCChhHHHHHHHHHHhCCC-----CcEEEEEeh
Confidence 58999998 8999999988875422 345555664
No 62
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=23.93 E-value=1.2e+02 Score=33.96 Aligned_cols=115 Identities=19% Similarity=0.285 Sum_probs=67.2
Q ss_pred CCcccccc-eeEcCCCceeeEecCCCCCCCceec-cccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEe-CC
Q 011214 214 GDQYRATD-TVIKGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLST-KN 290 (491)
Q Consensus 214 Eg~Y~g~e-~~~~~~~~~~l~~~~~~g~~~~~~~-~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~-Ka 290 (491)
+|+|.+.- ..+.+.....+.|...+|.. ..+. .-.....++.++++.+.+....|...-.+-|+..+- +.+.| |+
T Consensus 181 gDFf~~Eks~~l~~a~~v~ie~~~kdG~~-~vlk~~~~l~~geiiD~~~mskkaL~~F~~~q~~dak~~gV-lfSlH~KA 258 (744)
T COG2838 181 GDFFHNEKSMTLDQATDVRIEFTAKDGKK-KVLKPPVALQDGEIIDATFMSKKALCAFYEEQMQDAKATGV-LFSLHLKA 258 (744)
T ss_pred CcccccceeeeeccCccEEEEEEecCCcE-EEecCccccccccchHHHHhhHHHHHHHHHHHHHhhhhcCe-EEeehhhh
Confidence 45554432 23345555667776666632 1110 000112456666778888777666666666655553 34444 99
Q ss_pred ccccccch----HHHHH-HHHHHHhhhccccccCCeEEeeEeHHHH
Q 011214 291 TILKKYDG----RFKDI-FQQVYEERWRQKFEEHSIWYEHRLIDDM 331 (491)
Q Consensus 291 NIlk~tdg----lfr~i-~~eVa~~eYp~~f~~~~I~~e~~lVDa~ 331 (491)
+.||.+|- -+-++ +.++. .+|.++|++.||..+.-+.|-.
T Consensus 259 TMMKVSdPiiFGhaVk~fyk~~f-~k~~~~f~~lGvn~nNGl~~l~ 303 (744)
T COG2838 259 TMMKVSDPIIFGHAVKVFYKDVF-AKHGDLFDALGVNVNNGLSDLY 303 (744)
T ss_pred hhhhccCceehhHHHHHHHHHHH-HHHHHHHHHhCCCccccHHHHH
Confidence 99998884 23333 45566 4788888899998877766543
No 63
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=23.73 E-value=65 Score=34.09 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=17.7
Q ss_pred ecccEEEEcCC--ccHHHHHHHHH
Q 011214 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (491)
Q Consensus 84 ~~~~I~vi~GD--gIGpeI~~~~~ 105 (491)
|+.+|++--|| ||||||+-.++
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 34689999999 99999976554
No 64
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=23.51 E-value=4.2e+02 Score=28.48 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=71.3
Q ss_pred HHhCCCCeeeeccCCccchhh-hhhhhhcCCcccc-cccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHH
Q 011214 335 AIKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (491)
Q Consensus 335 LVk~P~~FVIvt~NlfGDILS-DlaA~l~GslGla-pSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS 412 (491)
.+.++.+-.++.+||=||+|. ++++.+.-.-|+- -..-+++|.+. .+.+++.-+ +| +| +++|-
T Consensus 92 av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~---~~~~~~~gR--------RG-lA---Gtvlv 156 (356)
T PRK11468 92 QVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAV---KDSLYTAGR--------RG-VA---NTVLI 156 (356)
T ss_pred hhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccC---CCCcCCCCC--------cc-hh---HHHHH
Confidence 456777888889999999985 6666665555543 23345666542 333333222 45 55 33332
Q ss_pred HH--HHHHhhcccCcchhHHHHHHHHHHHHHHHH------H------cCCCchh-------hhhhccC-CCCCCccccCH
Q 011214 413 WT--RGLEHRAKLDKNERLLHFVQKLEAACIEAV------E------TGKMTKD-------LAILVHG-PKVSREFYLNT 470 (491)
Q Consensus 413 ~a--mmL~hlg~ld~~~~l~~~A~~Ie~AV~~~l------~------~G~~T~D-------Lg~~~~G-~~~~~~~~~sT 470 (491)
.- -+..-.|. + |.+..+.-++++..+- . .|.-+.+ +|.-+|| ++..|....+.
T Consensus 157 ~KiaGAaAe~G~-s----L~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~~~~a 231 (356)
T PRK11468 157 EKLVGAAAERGY-S----LDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSL 231 (356)
T ss_pred HHHHHHHHhCCC-C----HHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCCCCCH
Confidence 11 11112221 1 4455554455554421 1 1111212 4555788 47778888899
Q ss_pred HHHHHHHHHHHHh
Q 011214 471 EEFIDAVATNLGA 483 (491)
Q Consensus 471 ~ef~daV~~~l~~ 483 (491)
.|+++.+++.|-.
T Consensus 232 ~elv~~l~~~ll~ 244 (356)
T PRK11468 232 DQTVDEMFDTLLE 244 (356)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988854
No 65
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.22 E-value=77 Score=33.66 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=17.1
Q ss_pred cccEEEEcCC--ccHHHHHHHHH
Q 011214 85 QNPIVEMDGD--EMTRIIWQMIK 105 (491)
Q Consensus 85 ~~~I~vi~GD--gIGpeI~~~~~ 105 (491)
..+|++-.|| ||||||+-.++
T Consensus 3 ~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 3 MRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 4689999999 99999966543
No 66
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.17 E-value=78 Score=33.72 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=17.9
Q ss_pred ecccEEEEcCC--ccHHHHHHHHH
Q 011214 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (491)
Q Consensus 84 ~~~~I~vi~GD--gIGpeI~~~~~ 105 (491)
|+.+|++--|| ||||||+-.++
T Consensus 8 ~~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 8 PRPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHH
Confidence 34689999999 99999976554
No 67
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=21.16 E-value=1e+02 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 011214 263 DESIRAFAESSMSLAFSKKWPLYLST 288 (491)
Q Consensus 263 r~~ieRiar~AFe~A~~r~~kVt~v~ 288 (491)
.+.+++.+++|+++|...+.+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 45677999999999999887776655
No 68
>PRK01355 azoreductase; Reviewed
Probab=20.53 E-value=4.1e+02 Score=25.31 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=46.3
Q ss_pred cEEEEcC------CccHHHHHHHHHHHHhcCCCceeEEEEecchhhh----------hhcC-CCCcHHHHHHHHhcCeEE
Q 011214 87 PIVEMDG------DEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNR----------DATD-DKVTVESAEATLKYNVAI 149 (491)
Q Consensus 87 ~I~vi~G------DgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~----------~~tg-~~lp~etl~aik~~da~L 149 (491)
+|++|-| .+.+..+.++.++.+.+.+...+++.+|+..... .... ..-.++..+.++++|+++
T Consensus 3 kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV 82 (199)
T PRK01355 3 KVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVV 82 (199)
T ss_pred eEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEE
Confidence 4555544 4666777777777665533233344444432211 1010 112245678888999999
Q ss_pred EccccCCCccchhhhccccCCCCccHHHHhhcCce
Q 011214 150 KCATITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 150 kGav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
++ +|.+ |.++-..|..-+|-.
T Consensus 83 ~~---sP~y-----------~~~ipa~LK~~iDrv 103 (199)
T PRK01355 83 IS---CPMT-----------NFNVPATLKNYLDHI 103 (199)
T ss_pred EE---cCcc-----------ccCChHHHHHHHHHH
Confidence 84 4654 334456777777753
Done!