Query 011214
Match_columns 491
No_of_seqs 171 out of 1534
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 5E-120 2E-124 950.2 34.2 402 79-486 24-426 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 4E-117 1E-121 927.2 34.9 407 80-486 3-411 (413)
3 4aoy_A Isocitrate dehydrogenas 100.0 6E-116 2E-120 913.3 32.5 399 80-483 2-400 (402)
4 2uxq_A Isocitrate dehydrogenas 100.0 1E-115 4E-120 912.9 32.6 398 81-483 2-399 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 3E-113 9E-118 895.1 35.5 395 80-485 2-399 (399)
6 2qfy_A Isocitrate dehydrogenas 100.0 2E-113 7E-118 901.6 32.9 406 79-486 16-424 (427)
7 1x0l_A Homoisocitrate dehydrog 100.0 4E-105 1E-109 814.8 34.9 326 86-482 2-331 (333)
8 3flk_A Tartrate dehydrogenase/ 100.0 9E-105 3E-109 820.5 32.0 341 84-482 4-361 (364)
9 2y3z_A 3-isopropylmalate dehyd 100.0 2E-104 6E-109 816.3 30.7 333 86-485 4-351 (359)
10 3ty4_A Probable homoisocitrate 100.0 2E-103 6E-108 810.4 33.1 332 85-482 10-365 (366)
11 3u1h_A 3-isopropylmalate dehyd 100.0 2E-103 8E-108 813.2 32.7 345 82-484 20-379 (390)
12 1wpw_A 3-isopropylmalate dehyd 100.0 2E-103 8E-108 802.6 32.1 326 86-481 2-335 (336)
13 3udu_A 3-isopropylmalate dehyd 100.0 3E-103 1E-107 807.0 29.1 336 86-483 7-357 (361)
14 1cnz_A IPMDH, IMDH, protein (3 100.0 7E-103 2E-107 806.4 31.8 340 86-483 5-361 (363)
15 3vmk_A 3-isopropylmalate dehyd 100.0 5E-103 2E-107 809.1 30.5 345 85-483 13-373 (375)
16 3blx_A Isocitrate dehydrogenas 100.0 2E-103 9E-108 805.3 26.7 330 81-483 13-348 (349)
17 3dms_A Isocitrate dehydrogenas 100.0 1E-102 4E-107 819.3 31.1 365 80-481 29-426 (427)
18 3blx_B Isocitrate dehydrogenas 100.0 2E-103 8E-108 806.9 25.3 329 81-481 17-354 (354)
19 3r8w_A 3-isopropylmalate dehyd 100.0 4E-103 2E-107 815.1 27.7 346 83-486 40-402 (405)
20 2d1c_A Isocitrate dehydrogenas 100.0 3E-102 1E-106 823.0 34.0 340 79-486 9-360 (496)
21 2e0c_A 409AA long hypothetical 100.0 4E-102 1E-106 811.6 33.2 364 79-482 16-407 (409)
22 1hqs_A Isocitrate dehydrogenas 100.0 3E-102 1E-106 814.8 31.0 369 80-481 12-422 (423)
23 1vlc_A 3-isopropylmalate dehyd 100.0 3E-102 1E-106 801.3 29.5 336 86-483 13-364 (366)
24 2iv0_A Isocitrate dehydrogenas 100.0 6E-102 2E-106 810.6 31.3 363 80-482 20-410 (412)
25 1a05_A IPMDH, IMDH, 3-isopropy 100.0 3E-102 1E-106 801.0 28.1 341 86-484 2-357 (358)
26 1w0d_A 3-isopropylmalate dehyd 100.0 8E-102 3E-106 791.9 29.6 329 86-481 2-337 (337)
27 2d4v_A Isocitrate dehydrogenas 100.0 1E-101 4E-106 810.8 29.3 365 80-481 19-429 (429)
28 1tyo_A Isocitrate dehydrogenas 100.0 4E-101 2E-105 808.0 33.0 364 80-482 28-422 (435)
29 1itw_A Isocitrate dehydrogenas 97.6 0.00094 3.2E-08 71.8 16.2 222 212-448 415-645 (741)
30 2b0t_A NADP isocitrate dehydro 97.6 0.00096 3.3E-08 71.8 16.0 222 212-448 411-641 (738)
31 1yxo_A 4-hydroxythreonine-4-ph 87.3 0.33 1.1E-05 49.5 3.4 139 260-417 174-321 (328)
32 3lxy_A 4-hydroxythreonine-4-ph 87.1 0.34 1.1E-05 49.5 3.4 135 260-418 179-327 (334)
33 2hi1_A 4-hydroxythreonine-4-ph 87.1 0.33 1.1E-05 49.5 3.2 140 260-417 181-327 (330)
34 4aty_A Terephthalate 1,2-CIS-d 86.5 0.35 1.2E-05 49.4 3.1 134 260-417 196-339 (349)
35 3tsn_A 4-hydroxythreonine-4-ph 79.6 0.98 3.3E-05 46.6 3.1 32 383-419 332-363 (367)
36 1itw_A Isocitrate dehydrogenas 71.1 4.8 0.00016 43.9 5.7 120 208-328 173-298 (741)
37 2b0t_A NADP isocitrate dehydro 70.0 4.8 0.00016 43.8 5.4 118 208-326 171-294 (738)
38 2qfy_A Isocitrate dehydrogenas 46.4 3.5 0.00012 43.3 -0.6 16 203-218 156-171 (427)
39 3u7r_A NADPH-dependent FMN red 41.4 71 0.0024 29.3 7.6 84 84-184 1-93 (190)
40 3k1y_A Oxidoreductase; structu 32.8 1.3E+02 0.0046 27.3 8.0 85 86-184 12-111 (191)
41 1yxo_A 4-hydroxythreonine-4-ph 25.5 38 0.0013 34.3 3.0 21 84-104 1-23 (328)
42 2q62_A ARSH; alpha/beta, flavo 25.0 1.4E+02 0.0049 28.3 6.9 83 86-184 35-124 (247)
43 3lxy_A 4-hydroxythreonine-4-ph 24.7 36 0.0012 34.5 2.7 17 86-102 9-27 (334)
44 2hi1_A 4-hydroxythreonine-4-ph 22.2 51 0.0018 33.4 3.2 19 86-104 7-27 (330)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.1e-120 Score=950.24 Aligned_cols=402 Identities=66% Similarity=1.132 Sum_probs=377.1
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 79 ~~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
.+||+|++||++|||||||||||++++++|.+++++|+|+++++|.+++++||+++|++++++|+++||+||||++||++
T Consensus 24 ~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 103 (427)
T 3us8_A 24 MAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDE 103 (427)
T ss_dssp -CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
++++|++++++|+|||++||++||||||+|||.++++|+++++|++|+||+||||||+|+|+|+.+.++++.++||.+++
T Consensus 104 ~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~ 183 (427)
T 3us8_A 104 GRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED 183 (427)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred cccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccc
Confidence 98999999999999999999999999999998668999998888999999999999999999999999999999998877
Q ss_pred CCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhcccccc
Q 011214 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (491)
Q Consensus 239 g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~ 318 (491)
| .+.+.++++|++.+++++++|||+++|||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++
T Consensus 184 G-~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~ 262 (427)
T 3us8_A 184 G-QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKA 262 (427)
T ss_dssp S-CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred c-ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCC
Confidence 6 455566777777788888999999999999999999999999999999999999999999999999995599999999
Q ss_pred CCeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccC
Q 011214 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (491)
Q Consensus 319 ~~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~ia 398 (491)
++|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+||||||||+++||
T Consensus 263 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iA 342 (427)
T 3us8_A 263 EKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQK 342 (427)
T ss_dssp TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHT
T ss_pred CCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcC
Confidence 99999999999999999999999999999999999999999999999999999999987557999999999999999999
Q ss_pred CCCCc-cCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHH
Q 011214 399 GQETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (491)
Q Consensus 399 Gk~~i-ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV 477 (491)
||| + |||+|+||||+|||+|+|++++|+++.++|++|++||.++|++|++|+|||.+. ++ ..+.++|+||+|+|
T Consensus 343 Gk~-i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~~---~~~~~~T~e~~daV 417 (427)
T 3us8_A 343 GEE-TSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-GP---DQPWLSTTGFLDKI 417 (427)
T ss_dssp TCC-CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-CT---TCCCBCHHHHHHHH
T ss_pred CCC-ceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-cc---CCcccCHHHHHHHH
Confidence 999 7 999999999999999999999899999999999999999999999999998321 11 12369999999999
Q ss_pred HHHHHhhhc
Q 011214 478 ATNLGAKLR 486 (491)
Q Consensus 478 ~~~l~~~~~ 486 (491)
+++|+++|.
T Consensus 418 ~~~l~~~l~ 426 (427)
T 3us8_A 418 DENLRKAMA 426 (427)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999998774
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=3.7e-117 Score=927.20 Aligned_cols=407 Identities=66% Similarity=1.140 Sum_probs=373.1
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.||+|++||++|||||||||||++++++|..++++|+|+++++|++++++||+++|++++++|+++||+||||++||+++
T Consensus 3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~ 82 (413)
T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 59999999999999999999999999999988999999999999999999999999999999999999999999999988
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
+++++.++++|+|||++||++||||||+|||+++++|++.++|++||||+||||||+|.++|++++++|+.++.|.+++|
T Consensus 83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 78887777789999999999999999999997789998888888999999999999999999999999998888876656
Q ss_pred CCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccC
Q 011214 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~ 319 (491)
..+.+..+++++..+++++++||+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 242 (413)
T 1lwd_A 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242 (413)
T ss_dssp CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCC
Confidence 43445555555556778889999999999999999999999999999999999999999999999999955999888888
Q ss_pred CeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCC
Q 011214 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (491)
Q Consensus 320 ~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaG 399 (491)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+||||||||++||||
T Consensus 243 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~aG 322 (413)
T 1lwd_A 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKG 322 (413)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhcC
Confidence 89999999999999999999999999999999999999999999999999999999885569999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccC-CCCCCc-cccCHHHHHHHH
Q 011214 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG-PKVSRE-FYLNTEEFIDAV 477 (491)
Q Consensus 400 k~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G-~~~~~~-~~~sT~ef~daV 477 (491)
||++|||+|+||||+|||+|||+.+.|+++.++|++|++||.++|++|++|+|||.+.+| +++++. +.++|+||+|+|
T Consensus 323 k~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~daV 402 (413)
T 1lwd_A 323 RPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTI 402 (413)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHH
T ss_pred CCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcCCcCcccccccCCcccccccCCCCCHHHHHHHH
Confidence 993399999999999999999998888899999999999999999999999999744335 122222 368999999999
Q ss_pred HHHHHhhhc
Q 011214 478 ATNLGAKLR 486 (491)
Q Consensus 478 ~~~l~~~~~ 486 (491)
+++|+++|.
T Consensus 403 ~~~l~~~~~ 411 (413)
T 1lwd_A 403 KSNLDRALG 411 (413)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987765
No 3
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=6.4e-116 Score=913.31 Aligned_cols=399 Identities=52% Similarity=0.912 Sum_probs=348.1
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.||+|++||++|||||||||+|+.++++++.++++|+|+++|+|.+++++||+++|++++++|+++||+||||++||.++
T Consensus 2 ~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~ 81 (402)
T 4aoy_A 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQ 81 (402)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
+++|++++++|+|||++||++||||||+|||.++++|++.++|++||||+||||||+|+|+|+...++++.++.|.+++|
T Consensus 82 ~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g 161 (402)
T 4aoy_A 82 RVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 (402)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTS
T ss_pred ccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCC
Confidence 99999999999999999999999999999986678887777788999999999999999999999889999999988776
Q ss_pred CCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccC
Q 011214 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~ 319 (491)
.+ .+.++.+|++.++++++++|+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++||++|+++
T Consensus 162 ~~-~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~ 240 (402)
T 4aoy_A 162 EV-SRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAK 240 (402)
T ss_dssp CE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cc-cccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCC
Confidence 53 55566777778888999999999999999999999999999999999999999999999999999965999999999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCC
Q 011214 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (491)
Q Consensus 320 ~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaG 399 (491)
+|+++|++||+|+||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .++|||+||||||||++||||
T Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~-~~~fEp~HGSApd~~~~~iaG 319 (402)
T 4aoy_A 241 NLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG-KYEFEAAHGTVTRHYYKHLKG 319 (402)
T ss_dssp TCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTC-CEEEEC---------------
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCC-ceEEeeccCCccccchhhccC
Confidence 9999999999999999999999999999999999999999999999999999999887 379999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHH
Q 011214 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVAT 479 (491)
Q Consensus 400 k~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~ 479 (491)
||++|||+|+||||+|||+|+|++|+|+++.++|++|++||.++|++|++|+|||...+| ...+.++|+||+|+|++
T Consensus 320 k~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~~T~Dlgg~~~~---~~~~~~~T~ef~~av~~ 396 (402)
T 4aoy_A 320 EETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLSEV---PEKKIVNTEDFLKEIRK 396 (402)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTEEEHHHHTTCCC---SCCEEECHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCCCCccccccccc---CCCCCcCHHHHHHHHHH
Confidence 993399999999999999999999989999999999999999999999999999822211 11246799999999999
Q ss_pred HHHh
Q 011214 480 NLGA 483 (491)
Q Consensus 480 ~l~~ 483 (491)
+|++
T Consensus 397 ~l~~ 400 (402)
T 4aoy_A 397 TFEG 400 (402)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9964
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=1.3e-115 Score=912.90 Aligned_cols=398 Identities=46% Similarity=0.818 Sum_probs=365.0
Q ss_pred ceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 81 ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
||+|++||++|||||||||||++++++|++++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+++
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCCC
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~ 240 (491)
+++++++++|+|||++||++||||||+|||+++++|++.++|++|+||+||||||+|+++|+.+.+++..++.|..++|
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g- 160 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNG- 160 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTS-
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCC-
Confidence 8888887789999999999999999999987678887777788999999999999999999999888877777776655
Q ss_pred CCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCC
Q 011214 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (491)
Q Consensus 241 ~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~ 320 (491)
...+..+++|+..+++++++||+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~ 240 (402)
T 2uxq_A 161 KETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAG 240 (402)
T ss_dssp CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred ccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCe
Confidence 33445555555567888889999999999999999999999999999999999999999999999999559998888888
Q ss_pred eEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCC
Q 011214 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (491)
Q Consensus 321 I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk 400 (491)
|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++. +||||+||||||||++|||||
T Consensus 241 I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~-~lfEpvHGSAPdi~~~~~aGk 319 (402)
T 2uxq_A 241 IEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGY-FEYEAAHGTVQRHYYQHLKGE 319 (402)
T ss_dssp CCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSC-EEEECCSCCCHHHHHHHHTTC
T ss_pred EEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCCC-eEEeCCCCChhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999873 699999999999999999999
Q ss_pred CCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHH
Q 011214 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (491)
Q Consensus 401 ~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~ 480 (491)
|++|||+|+||||+|||+|||+.+.|+++.++|++|++||.++|++|++|+|||.+.+|. +.+.++|+||+|+|+++
T Consensus 320 ~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlgg~~~g~---~~~~~~T~e~~daI~~~ 396 (402)
T 2uxq_A 320 RTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEPA---AIKVLDSIEFIDELGKR 396 (402)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSSC---CSEECCHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCcCHHHHHHHHHHH
Confidence 933999999999999999999988889999999999999999999999999998332231 11358999999999999
Q ss_pred HHh
Q 011214 481 LGA 483 (491)
Q Consensus 481 l~~ 483 (491)
|++
T Consensus 397 l~~ 399 (402)
T 2uxq_A 397 LQQ 399 (402)
T ss_dssp HHH
T ss_pred Hhh
Confidence 953
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-113 Score=895.09 Aligned_cols=395 Identities=51% Similarity=0.893 Sum_probs=358.5
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCcc
Q 011214 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (491)
Q Consensus 80 ~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 159 (491)
.||+|++||++|||||||||||++++++|+.++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.++
T Consensus 2 ~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~ 81 (399)
T 1zor_A 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAE 81 (399)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
+++++.++++|+|+|++||++||||||+|||+++++|++.++|++|+||+||||||+|.++|++++++++.++.|.++.
T Consensus 82 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~- 160 (399)
T 1zor_A 82 RVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE- 160 (399)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS-
T ss_pred cCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccc-
Confidence 7777777778999999999999999999999778888887778899999999999999999999999999887776421
Q ss_pred CCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHh---hhcccc
Q 011214 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE---RWRQKF 316 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~---eYp~~f 316 (491)
..+..+.+++..++++++++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||++ +||+
T Consensus 161 --~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~-- 236 (399)
T 1zor_A 161 --NKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEK-- 236 (399)
T ss_dssp --CEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHH--
T ss_pred --cccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCC--
Confidence 123344445556778888999999999999999999999989999999999999999999999999942 7882
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhc
Q 011214 317 EEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (491)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~ 396 (491)
.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++. +||||+|||||||+++|
T Consensus 237 --~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~-~~fEpvHGSAPdi~~~~ 313 (399)
T 1zor_A 237 --AGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGV-YEFEAAHGTVRRHYYRY 313 (399)
T ss_dssp --TTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCC-EEEEESSCCCHHHHHHH
T ss_pred --CcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCCC-eEEeCCCCcccccchhh
Confidence 259999999999999999999999999999999999999999999999999999999884 69999999999999999
Q ss_pred cCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHH
Q 011214 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDA 476 (491)
Q Consensus 397 iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~da 476 (491)
|||||++|||+|+||||+|||+|||+++.|+++.++|++|++||.++|++|++|+|||.+.+|. ..+.++|+||+|+
T Consensus 314 iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~g~---~~~~~~T~e~~da 390 (399)
T 1zor_A 314 LKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPP---IDKYVTLEEFIDE 390 (399)
T ss_dssp TTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSC---CCCCCCHHHHHHH
T ss_pred hcCCCCccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCCCHHHHHHH
Confidence 9999933999999999999999999988888899999999999999999999999998333231 0124799999999
Q ss_pred HHHHHHhhh
Q 011214 477 VATNLGAKL 485 (491)
Q Consensus 477 V~~~l~~~~ 485 (491)
|+++|+++|
T Consensus 391 V~~~l~~~~ 399 (399)
T 1zor_A 391 VKKNLEKLL 399 (399)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhC
Confidence 999997654
No 6
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=2.1e-113 Score=901.64 Aligned_cols=406 Identities=65% Similarity=1.063 Sum_probs=371.1
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 79 ~~ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
.+||+|++||++|||||||||||++++++++.++++|+|+++++|++++++||+++|++++++|+++||+||||++||.+
T Consensus 16 ~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~ 95 (427)
T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427)
T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCC
Confidence 35999999999999999999999999999988899999999999999999999999999999999999999999999988
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCC
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~ 238 (491)
.+++|++|+++|+|+|++||++||||+|+|||+++++|++.++|+.|++|+||+++|+|.++|++++||+++++||.+++
T Consensus 96 ~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~ 175 (427)
T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSD 175 (427)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESC
T ss_pred cccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccc
Confidence 77778888888999999999999999999999778899998888999999999999999999999999999999996654
Q ss_pred --CCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhcccc
Q 011214 239 --GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (491)
Q Consensus 239 --g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f 316 (491)
|+...+..+.+++..+++..+++|+++++||+|+||+||++|++|||+|||+||||.||||||++|+|||+++||++|
T Consensus 176 teG~~~~~~~~~~~~~~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~ 255 (427)
T 2qfy_A 176 PTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255 (427)
T ss_dssp TTTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred cCCccccccccccCCCceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcc
Confidence 543334444444456777768899999999999999999999999999999999999999999999999856999888
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCCeeeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhc
Q 011214 317 EEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (491)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LVk~P~~FVIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~ 396 (491)
++.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++..++|||+||||||||+++
T Consensus 256 ~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~d 335 (427)
T 2qfy_A 256 EQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKY 335 (427)
T ss_dssp HHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred cCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccchh
Confidence 88889999999999999999999999999999999999999999999999999999999875579999999999999999
Q ss_pred cCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHH-cCCCchhhhhhccCCCCCCccccCHHHHHH
Q 011214 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVE-TGKMTKDLAILVHGPKVSREFYLNTEEFID 475 (491)
Q Consensus 397 iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~-~G~~T~DLg~~~~G~~~~~~~~~sT~ef~d 475 (491)
|||||++|||+|+||||+|||+|||++++|+++.++|++||+||.++|+ +|++|+|||.+. | +..+.+.++|+||+|
T Consensus 336 iAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G~~T~Dlgg~~-g-~~~~~~~~~T~e~~d 413 (427)
T 2qfy_A 336 QKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALAC-G-NNERSAYVTTEEFLD 413 (427)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-T-CCSGGGCCCHHHHHH
T ss_pred hcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCCCccccccccC-C-ccccCCCCCHHHHHH
Confidence 9999933999999999999999999998899999999999999999999 999999998221 3 111223589999999
Q ss_pred HHHHHHHhhhc
Q 011214 476 AVATNLGAKLR 486 (491)
Q Consensus 476 aV~~~l~~~~~ 486 (491)
+|+++|+++|.
T Consensus 414 aV~~~l~~~l~ 424 (427)
T 2qfy_A 414 AVEKRLQKEIK 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987765
No 7
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=3.8e-105 Score=814.83 Aligned_cols=326 Identities=20% Similarity=0.217 Sum_probs=305.4
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
++|++||||||||||+++++++|.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||++||.+++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 579999999999999999999998889999999999999999999999999999999999999999999997543
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC-CCeEEEecccCCcccccceeEcCCCceeeEecCCCCCCCce
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~-~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~~~~ 244 (491)
.+|+|+|++||++||||||+||| +++| +.++++ +|+|||||||||+|+|.++. .
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~--~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~------------------- 131 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-Y------------------- 131 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-E-------------------
T ss_pred --cCccChhHHHHHHcCCEEEEEEE--eecc-CCCCCCCCCEEEEecCccceecccccc-C-------------------
Confidence 25899999999999999999998 6888 766654 99999999999999998753 1
Q ss_pred eccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCCeE
Q 011214 245 LDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (491)
Q Consensus 245 ~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~ 322 (491)
.+++ ..++|||+++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||+ ++|| +|+
T Consensus 132 --------~~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva-~eyp------~I~ 196 (333)
T 1x0l_A 132 --------LDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVA-KDFP------LVN 196 (333)
T ss_dssp --------TTEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHH-TTCT------TSE
T ss_pred --------CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHH-HHCC------Cce
Confidence 1344 458899999999999999999999 5789999999999999999999999999 6999 999
Q ss_pred EeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCC
Q 011214 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (491)
Q Consensus 323 ~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~ 401 (491)
++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .||||+|||||| |||||
T Consensus 197 ~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAPd-----iaGk~ 269 (333)
T 1x0l_A 197 VQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAPD-----IAGKG 269 (333)
T ss_dssp EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCGG-----GTTSS
T ss_pred EEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChhh-----hcCCC
Confidence 99999999999999999999 99999999999999999999999999999999987 489999999999 99999
Q ss_pred CccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHHH
Q 011214 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 402 ~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
+|||+|+|||++|||+|+| +.++|++||+||.+++++|++|+||| | .++|+||+|+|+++|
T Consensus 270 -iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~daV~~~l 330 (333)
T 1x0l_A 270 -IANPTAAILSAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLG----G-------DATTEAFTEAVVEAL 330 (333)
T ss_dssp -CCCCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHSCCCGGGT----C-------CCCHHHHHHHHHHHH
T ss_pred -CcCcHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCCccCccC----C-------CCCHHHHHHHHHHHH
Confidence 9999999999999999998 46899999999999999999999998 7 589999999999999
Q ss_pred H
Q 011214 482 G 482 (491)
Q Consensus 482 ~ 482 (491)
+
T Consensus 331 ~ 331 (333)
T 1x0l_A 331 K 331 (333)
T ss_dssp H
T ss_pred h
Confidence 5
No 8
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=8.7e-105 Score=820.51 Aligned_cols=341 Identities=17% Similarity=0.168 Sum_probs=310.4
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhc----CCCceeEEEEecch-hhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 84 VQNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGI-LNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 84 ~~~~I~vi~GDgIGpeI~~~~~~~l~~----~~~~i~~~~~dlG~-~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
|.++|++||||||||||+++++++|.+ .+++|+|+++++|. +++++||+++|++++++|+++||+||||++||++
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 457899999999999999999988854 27999999999999 9999999999999999999999999999999985
Q ss_pred cchhhhccccC--CCCccHHHHhhcCceEEEEeeecccCCCCCCCC------CCCeEEEecccCCcccccceeEcCCCce
Q 011214 159 TRMKEFGLKSM--WRSPNGTIRNILNGTVFREPILCQNIPRIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (491)
Q Consensus 159 ~~~~e~~l~~~--~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~------~~divIvREntEg~Y~g~e~~~~~~~~~ 230 (491)
. + ++ ++|+|++||++||||||+||| +.+|++.+++ ++|+|||||||||+|+|.++....
T Consensus 84 ~--~-----~~~~~~s~~l~LR~~ldlyanvRP~--~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~---- 150 (364)
T 3flk_A 84 V--P-----DHISLWGSLLKFRREFDQYVNIRPV--RLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFE---- 150 (364)
T ss_dssp B--C-----HHHHHHTTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEEST----
T ss_pred C--C-----CCcCcccchHHHHHHhCCeEEEEEE--eccCCcccccccccCCCCCEEEEeeCCCceecCcCceecc----
Confidence 1 1 12 368999999999999999997 6888876654 489999999999999999875420
Q ss_pred eeEecCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHH
Q 011214 231 KMVFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKW-PLYLSTKNTILKKYDGRFKDIFQQVY 308 (491)
Q Consensus 231 ~l~~~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~~-kVt~v~KaNIlk~tdglfr~i~~eVa 308 (491)
| .+.+++. .++|||+++|||+|+||+||++|++ |||+|||+||||.+||||+++|+||+
T Consensus 151 --------~-----------~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva 211 (364)
T 3flk_A 151 --------N-----------TENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMA 211 (364)
T ss_dssp --------T-----------STTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHH
T ss_pred --------C-----------CCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHH
Confidence 0 1235664 5889999999999999999999975 69999999999999999999999999
Q ss_pred HhhhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCc-ceeeeccc
Q 011214 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAH 386 (491)
Q Consensus 309 ~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~-~~~fEp~H 386 (491)
++|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. +.||||+|
T Consensus 212 -~eyp------dv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~H 284 (364)
T 3flk_A 212 -AHYP------HVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVH 284 (364)
T ss_dssp -TTCT------TCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESS
T ss_pred -HHCC------CceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCC
Confidence 6999 99999999999999999999999 999999999999999999999999999999998863 46999999
Q ss_pred cccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCcc
Q 011214 387 GTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREF 466 (491)
Q Consensus 387 GSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~ 466 (491)
||||| ||||| +|||+|+|||++|||+|+|++| +++.++|++||+||.++|++|++|+||| |
T Consensus 285 GSAPd-----iAGk~-iANP~A~IlS~ammL~~lg~~~--~~~~~~A~~Ie~Av~~~l~~G~~T~Dlg----g------- 345 (364)
T 3flk_A 285 GSAPD-----IFGKN-IANPIAMIWSGALMLEFLGQGD--ERYQRAHDDMLNAIERVIADGSVTPDMG----G------- 345 (364)
T ss_dssp CCCTT-----TTTSS-CCCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGT----C-------
T ss_pred CCchh-----hcCCC-ccCcHHHHHHHHHHHHHhCccc--chhHHHHHHHHHHHHHHHHcCCCCcccC----C-------
Confidence 99999 99999 9999999999999999999776 5688999999999999999999999998 8
Q ss_pred ccCHHHHHHHHHHHHH
Q 011214 467 YLNTEEFIDAVATNLG 482 (491)
Q Consensus 467 ~~sT~ef~daV~~~l~ 482 (491)
.++|+||+|+|+++|+
T Consensus 346 ~~~T~e~~~aV~~~l~ 361 (364)
T 3flk_A 346 TLSTQQVGAAISDTLA 361 (364)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 6999999999999996
No 9
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.8e-104 Score=816.32 Aligned_cols=333 Identities=20% Similarity=0.199 Sum_probs=305.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccch
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~ 161 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|++++++||+++|++++++|+++||+||||++||.++++
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 78999999999999999999999999999999999999999999987765
Q ss_pred hhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--CCC------CCCeEEEecccCCcccccceeEcCCCceeeE
Q 011214 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~~~------~~divIvREntEg~Y~g~e~~~~~~~~~~l~ 233 (491)
++ +++ .|++ |++||++||||||+||| +++|+++ +++ ++|+|||||||||+|+|.++..
T Consensus 84 ~~-~~~-~~~~-~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~--------- 149 (359)
T 2y3z_A 84 PR-KIR-PETG-LLSLRKSQDLFANLRPA--KVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGM--------- 149 (359)
T ss_dssp CG-GGC-HHHH-HHHHHHHTTEEEEEEEE--ECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEE---------
T ss_pred Cc-ccc-cchh-HHHHHHHhCCEEEEEEe--eccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcC---------
Confidence 53 332 3566 99999999999999998 6899974 333 4999999999999999987532
Q ss_pred ecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhh
Q 011214 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (491)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eY 312 (491)
+.+++ ..++|||+++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||+ ++|
T Consensus 150 ------------------~~~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 209 (359)
T 2y3z_A 150 ------------------SEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVG-RGY 209 (359)
T ss_dssp ------------------CSSCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTC
T ss_pred ------------------CCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHH-HHC
Confidence 01244 35789999999999999999999988999999999999 9999999999999 799
Q ss_pred ccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccccccc
Q 011214 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (491)
Q Consensus 313 p~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd 391 (491)
| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+||||||
T Consensus 210 p------dI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~--~fEpvHGSAPd 281 (359)
T 2y3z_A 210 P------DVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTP--VFEPVHGSAPD 281 (359)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCC--EEEESSCCCGG
T ss_pred C------cEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCCc--eeecCCCChhh
Confidence 9 99999999999999999999999 999999999999999999999999999999999884 89999999999
Q ss_pred chhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCH
Q 011214 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (491)
Q Consensus 392 ~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT 470 (491)
||||| +|||+|+|||++|||+| +| +.++|++|++||.++|++| +|+||| | +++|
T Consensus 282 -----iAGk~-iANP~A~IlS~ammL~~slg-------~~~~A~~Ie~Av~~~l~~g-~T~Dlg----g-------~~~T 336 (359)
T 2y3z_A 282 -----IAGKG-IANPTAAILSAAMMLEHAFG-------LVELARKVEDAVAKALLET-PPPDLG----G-------SAGT 336 (359)
T ss_dssp -----GTTSS-CSCTHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHS-CCGGGT----C-------CCCH
T ss_pred -----hCCCC-CcCCHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcC-CCCccC----C-------CCCH
Confidence 99999 99999999999999999 99 4689999999999999999 999998 7 5899
Q ss_pred HHHHHHHHHHHHhhh
Q 011214 471 EEFIDAVATNLGAKL 485 (491)
Q Consensus 471 ~ef~daV~~~l~~~~ 485 (491)
+||+|+|+++|++++
T Consensus 337 ~e~~daV~~~l~~~~ 351 (359)
T 2y3z_A 337 EAFTATVLRHLAAAA 351 (359)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999997553
No 10
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=1.7e-103 Score=810.40 Aligned_cols=332 Identities=20% Similarity=0.219 Sum_probs=304.6
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHh-cCeEEEccccCCCcc
Q 011214 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLK-YNVAIKCATITPDET 159 (491)
Q Consensus 85 ~~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~-~da~LkGav~tP~~~ 159 (491)
.++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|++ +|++||||+++|.++
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~ 89 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHK 89 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCC
Confidence 478999999999999999999988653 689999999999999999999999999999999 699999999999876
Q ss_pred chhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCCCCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 160 ~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
.+ +|+|+|++||++||||||+||| +++|++.. .++|+|||||||||+|+|.++.... +
T Consensus 90 ~~-------~~~s~~l~LRk~ldlyaNvRP~--~~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~------------~ 147 (366)
T 3ty4_A 90 VA-------GYSSPIVALRKKMGLYANVRPV--KSLDGAKG-KPVDLVIVRENTECLYVKEERMVQN------------T 147 (366)
T ss_dssp CT-------TCCCHHHHHHHHTTCCEEEEEE--ECCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC------------C
T ss_pred Cc-------ccccchHHHHHHhCCeEEEEEE--eccCCCCC-CCCcEEEEeeCCCCEeecCcceecc------------C
Confidence 32 5889999999999999999997 78998731 2599999999999999999876421 0
Q ss_pred CCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhC-------------CCCEEEEeCCccccccchHHHHHHH
Q 011214 240 TGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-------------KWPLYLSTKNTILKKYDGRFKDIFQ 305 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-------------~~kVt~v~KaNIlk~tdglfr~i~~ 305 (491)
...+++. .++|||+++|||+|+||+||++| ++|||+|||+|||+.+||||+++|+
T Consensus 148 -----------~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ 216 (366)
T 3ty4_A 148 -----------PGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCR 216 (366)
T ss_dssp -----------TTCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHH
T ss_pred -----------CCCceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 1234654 58899999999999999999999 6789999999999999999999999
Q ss_pred HH---HHhhhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCccee
Q 011214 306 QV---YEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLE 381 (491)
Q Consensus 306 eV---a~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~ 381 (491)
|| + ++|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++. .|
T Consensus 217 ev~~~a-~eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~--a~ 287 (366)
T 3ty4_A 217 HAQSLD-PSYA------SINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNF--VM 287 (366)
T ss_dssp HHGGGC-GGGT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSC--EE
T ss_pred HHHHhH-hhCC------CceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCc--eE
Confidence 99 6 7999 99999999999999999999999 99999999999999999999999999999999764 69
Q ss_pred eeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCC
Q 011214 382 AEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGP 460 (491)
Q Consensus 382 fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~ 460 (491)
|||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.++|++| ++|+||| |
T Consensus 288 fEpvHGSAPd-----IaGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~Av~~~l~~G~~~T~Dlg----g- 349 (366)
T 3ty4_A 288 SEPVHGSAPD-----IAGRG-IANPVATFRSVALMLEFMG-------HQDAAADIYTAVDKVLTEGKVLTPDLG----G- 349 (366)
T ss_dssp ECCSSCCCTT-----TTTSS-CCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHCSSCCGGGT----S-
T ss_pred EecCCCChhh-----cCCCC-ccCcHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCccCcccC----C-
Confidence 9999999999 99999 9999999999999999998 5789999999999999999 7999998 8
Q ss_pred CCCCccccCHHHHHHHHHHHHH
Q 011214 461 KVSREFYLNTEEFIDAVATNLG 482 (491)
Q Consensus 461 ~~~~~~~~sT~ef~daV~~~l~ 482 (491)
.++|+||+|+|+++|+
T Consensus 350 ------~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 350 ------KSGTNEITDAVLANIH 365 (366)
T ss_dssp ------CCCHHHHHHHHHHHC-
T ss_pred ------CcCHHHHHHHHHHHhh
Confidence 6999999999999874
No 11
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.3e-103 Score=813.24 Aligned_cols=345 Identities=20% Similarity=0.210 Sum_probs=301.9
Q ss_pred eeecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCC
Q 011214 82 VKVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 157 (491)
Q Consensus 82 i~~~~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~ 157 (491)
-+|+++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.
T Consensus 20 ~~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~ 99 (390)
T 3u1h_A 20 GAMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPK 99 (390)
T ss_dssp ----CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCST
T ss_pred cCccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCC
Confidence 367899999999999999999999988654 8999999999999999999999999999999999999999999998
Q ss_pred ccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--CCC------CCCeEEEecccCCcccccceeEcCCCc
Q 011214 158 ETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGK 229 (491)
Q Consensus 158 ~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~~~------~~divIvREntEg~Y~g~e~~~~~~~~ 229 (491)
++.++. + ..+.|+|++|||+||||||+||| +.+|++. +++ ++|+|||||||||+|+|.++....+
T Consensus 100 ~~~~~~-~--~~~~~~ll~LRk~ldLyANvRP~--k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~-- 172 (390)
T 3u1h_A 100 WDQNPS-E--LRPEKGLLGIRKGLDLFANLRPV--KVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEE-- 172 (390)
T ss_dssp TTSSCC-S--SSSSCCHHHHHHHTTEEEEEEEE--ECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CT--
T ss_pred cCCCCc-c--cCccchHHHHHHHhCCeEEEEEe--eccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCC--
Confidence 754321 1 12347899999999999999997 6888876 433 5999999999999999988754210
Q ss_pred eeeEecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHH
Q 011214 230 LKMVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVY 308 (491)
Q Consensus 230 ~~l~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa 308 (491)
+.+++ ..++|||+++|||+|+||+||++|++|||+|||+||| .+||||+++|+||+
T Consensus 173 ----------------------g~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva 229 (390)
T 3u1h_A 173 ----------------------GEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVA 229 (390)
T ss_dssp ----------------------TCSEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHH
T ss_pred ----------------------CCceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHH
Confidence 12344 4588999999999999999999999999999999999 69999999999999
Q ss_pred HhhhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccc
Q 011214 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHG 387 (491)
Q Consensus 309 ~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HG 387 (491)
++|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||
T Consensus 230 -~eYP------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHG 301 (390)
T 3u1h_A 230 -KEYP------DVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHG 301 (390)
T ss_dssp -TTCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSC
T ss_pred -hHCC------CCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCC
Confidence 6999 99999999999999999999999 99999999999999999999999999999999875 479999999
Q ss_pred ccccchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCcc
Q 011214 388 TVTRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREF 466 (491)
Q Consensus 388 SAPd~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~ 466 (491)
|||| ||||| +|||+|+|||++|||+| +| +.++|++|++||.++|++|++|+||+. +|. .
T Consensus 302 SAPD-----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~AV~~vl~~G~~T~Dl~~--gG~-----~ 361 (390)
T 3u1h_A 302 SAPD-----IAGKG-IANPLATILSAAMMLRYSFG-------LEEEAKAIEKAVEKVLAEGYRTADIAK--PGG-----K 361 (390)
T ss_dssp CCTT-----TTTSS-CSCTHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHTCCBTTTSC--SSC-----C
T ss_pred Chhh-----hcCCC-cCCcHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcChhhcc--CCC-----C
Confidence 9999 99999 99999999999999999 88 578999999999999999999999941 142 2
Q ss_pred ccCHHHHHHHHHHHHHhh
Q 011214 467 YLNTEEFIDAVATNLGAK 484 (491)
Q Consensus 467 ~~sT~ef~daV~~~l~~~ 484 (491)
.++|+||+|+|+++|+..
T Consensus 362 ~~~T~e~~daV~~~l~~~ 379 (390)
T 3u1h_A 362 YVSTTEMTDEVKAAVVDE 379 (390)
T ss_dssp CBCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhcc
Confidence 699999999999999743
No 12
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=2.2e-103 Score=802.63 Aligned_cols=326 Identities=19% Similarity=0.238 Sum_probs=305.6
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccch
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~ 161 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||++||.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 57999999999999999999988655 79999999999999999999999999999999999999999999952
Q ss_pred hhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC-CCeEEEecccCCcccccceeEcCCCceeeEecCCCCC
Q 011214 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~-~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~ 240 (491)
. +|++||++||||||+||| +.+|++.++++ +|+|||||||||+|.|.++...
T Consensus 79 ---------~-~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~--------------- 131 (336)
T 1wpw_A 79 ---------D-VVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVS--------------- 131 (336)
T ss_dssp ---------H-HHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEE---------------
T ss_pred ---------c-hHHHHHHHhCCEEEEEEE--eccCCCCCCCCCCcEEEEecCccCeEcCCccccC---------------
Confidence 2 799999999999999998 78999887775 9999999999999999876431
Q ss_pred CCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccC
Q 011214 241 GPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (491)
Q Consensus 241 ~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~ 319 (491)
++++. .++|||+++|||+|+||+||++|++|||+|||+||||.|||||+++|+|||+ +
T Consensus 132 ------------~~va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~-~-------- 190 (336)
T 1wpw_A 132 ------------DGVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLK-G-------- 190 (336)
T ss_dssp ------------TTEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHT-T--------
T ss_pred ------------CCeEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHH-h--------
Confidence 24554 4789999999999999999999988999999999999999999999999994 3
Q ss_pred CeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccC
Q 011214 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (491)
Q Consensus 320 ~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~ia 398 (491)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .||||+|||||| ||
T Consensus 191 ~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSApd-----ia 263 (336)
T 1wpw_A 191 KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAFD-----IA 263 (336)
T ss_dssp TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCTT-----TT
T ss_pred CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCchh-----hC
Confidence 79999999999999999999999 99999999999999999999999999999999987 489999999999 99
Q ss_pred CCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCccccCHHHHHHHH
Q 011214 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (491)
Q Consensus 399 Gk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~~~sT~ef~daV 477 (491)
||| +|||+|+|||++|||+|+|++|+|+++.++|++||+||.+++++| ++|+||| | .++|+||+|+|
T Consensus 264 Gk~-iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T~Dlg----G-------~~~T~e~~dav 331 (336)
T 1wpw_A 264 GKN-IGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG----G-------NATTDDLINEI 331 (336)
T ss_dssp TSS-CCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGT----C-------CCCHHHHHHHH
T ss_pred CCC-CcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCccCCccC----C-------CCCHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999 6999998 7 58999999999
Q ss_pred HHHH
Q 011214 478 ATNL 481 (491)
Q Consensus 478 ~~~l 481 (491)
+++|
T Consensus 332 ~~~l 335 (336)
T 1wpw_A 332 YNKL 335 (336)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 9876
No 13
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=3.3e-103 Score=807.00 Aligned_cols=336 Identities=22% Similarity=0.196 Sum_probs=302.2
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccch
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~ 161 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++.+
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 78999999999999999999988542 79999999999999999999999999999999999999999999987543
Q ss_pred hhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--C-------CCCCCeEEEecccCCcccccceeEcCCCceee
Q 011214 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--P-------GWKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~-------~~~~divIvREntEg~Y~g~e~~~~~~~~~~l 232 (491)
+. +. ..|.++|++||++||||||+||| |.+|++. + ..++|+|||||||||+|+|.++...
T Consensus 87 ~~-~~-~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~~------- 155 (361)
T 3udu_A 87 PI-DQ-RPERASLLPLRKHFNLFANLRPC--KIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGK------- 155 (361)
T ss_dssp CG-GG-SHHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEECS-------
T ss_pred CC-Cc-CccccchHHHHHHcCCEEEEEEe--eccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCcC-------
Confidence 21 11 11334589999999999999997 6788774 2 2259999999999999999765320
Q ss_pred EecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhh
Q 011214 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (491)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eY 312 (491)
..+...++|||+++|||+|+||+||++|++|||+|||+|||+ +||||+++|+||+ ++|
T Consensus 156 --------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva-~ey 213 (361)
T 3udu_A 156 --------------------ESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVA-KDY 213 (361)
T ss_dssp --------------------SEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGC
T ss_pred --------------------ceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHH-HHC
Confidence 112345889999999999999999999999999999999997 9999999999999 699
Q ss_pred ccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccccccc
Q 011214 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (491)
Q Consensus 313 p~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd 391 (491)
| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 214 p------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPd 286 (361)
T 3udu_A 214 Q------DINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAPD 286 (361)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCGG
T ss_pred C------CCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChhh
Confidence 9 99999999999999999999999 99999999999999999999999999999999876 4699999999999
Q ss_pred chhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCH
Q 011214 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (491)
Q Consensus 392 ~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT 470 (491)
||||| +|||+|+|||++|||+| +| +.++|++|++||.++|++|++|+||| |. +.++|
T Consensus 287 -----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg----G~-----~~~~T 344 (361)
T 3udu_A 287 -----IAHLN-IANPIAQILSAALMLKYSFK-------EEQAAQDIENAISLALAQGKMTKDLN----AK-----SYLNT 344 (361)
T ss_dssp -----GTTSS-CCCCHHHHHHHHHHHHHTSC-------CHHHHHHHHHHHHHHHHTTCCCTTTC----SS-----SCCCH
T ss_pred -----hcCCC-ccCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcCcCCC----CC-----CccCH
Confidence 99999 99999999999999999 87 57899999999999999999999998 63 26999
Q ss_pred HHHHHHHHHHHHh
Q 011214 471 EEFIDAVATNLGA 483 (491)
Q Consensus 471 ~ef~daV~~~l~~ 483 (491)
+||+|+|+++|++
T Consensus 345 ~e~~~aV~~~l~~ 357 (361)
T 3udu_A 345 DEMGDCILEILKE 357 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999964
No 14
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=7.3e-103 Score=806.36 Aligned_cols=340 Identities=19% Similarity=0.163 Sum_probs=305.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccch
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~ 161 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|.++.+
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 78999999999999999999999999999999999999999999987655
Q ss_pred hhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--CCC-------CCCeEEEecccCCcccccceeEcCCCceee
Q 011214 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~~~-------~~divIvREntEg~Y~g~e~~~~~~~~~~l 232 (491)
++ ++. .++++|++||++||||||+||| +.+|++. +++ ++|+|||||||||+|+|.++....
T Consensus 85 ~~-~~~-~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~------ 154 (363)
T 1cnz_A 85 PP-ESQ-PERGALLPLRKHFKLFSNLRPA--KLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREG------ 154 (363)
T ss_dssp CG-GGS-TTHHHHHHHHHHHTCCEEEEEE--ECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEEC------
T ss_pred Cc-ccC-cccchHHHHHHHcCCEEEEEEE--EecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCcccc------
Confidence 43 222 3567899999999999999998 6889874 343 489999999999999998643210
Q ss_pred EecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhh
Q 011214 233 VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (491)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~e 311 (491)
. ++.+++ ..++|||+++|||+|+||+||++|++|||+|||+|||| +||||+++|+||+ ++
T Consensus 155 ----~-------------~~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~e 215 (363)
T 1cnz_A 155 ----S-------------GQYEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-KT 215 (363)
T ss_dssp ----C-------------GGGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred ----C-------------CCCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HH
Confidence 0 012344 45889999999999999999999988999999999999 9999999999999 79
Q ss_pred hccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccc
Q 011214 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (491)
Q Consensus 312 Yp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAP 390 (491)
|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+|||||
T Consensus 216 yp------dI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP 288 (363)
T 1cnz_A 216 YP------DVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAP 288 (363)
T ss_dssp CT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCG
T ss_pred CC------CceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChh
Confidence 99 99999999999999999999999 99999999999999999999999999999999987 479999999999
Q ss_pred cchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhh-hhhccCCCCCCcccc
Q 011214 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL-AILVHGPKVSREFYL 468 (491)
Q Consensus 391 d~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DL-g~~~~G~~~~~~~~~ 468 (491)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.++|++|++|+|| | |. +.+
T Consensus 289 d-----iAGk~-iANP~A~IlS~ammL~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~g----G~-----~~~ 346 (363)
T 1cnz_A 289 D-----IAGKN-IANPIAQILSLALLLRYSLD-------ANDAATAIEQAINRALEEGVRTGDLAR----GA-----AAV 346 (363)
T ss_dssp G-----GTTTT-CSCCHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHTTCCCGGGTT----TT-----TCC
T ss_pred h-----hcCCC-ccCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHhcCCcCcccCC----CC-----CCC
Confidence 9 99999 99999999999999999 88 5789999999999999999999999 5 52 138
Q ss_pred CHHHHHHHHHHHHHh
Q 011214 469 NTEEFIDAVATNLGA 483 (491)
Q Consensus 469 sT~ef~daV~~~l~~ 483 (491)
+|+||+|+|+++|++
T Consensus 347 ~T~e~~daV~~~l~~ 361 (363)
T 1cnz_A 347 STDEMGDIIARYVAE 361 (363)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999964
No 15
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=5.1e-103 Score=809.05 Aligned_cols=345 Identities=20% Similarity=0.188 Sum_probs=305.3
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhc----CCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 85 QNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 85 ~~~I~vi~GDgIGpeI~~~~~~~l~~----~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
+++|++|||||||||||++++++|.+ .+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.++.
T Consensus 13 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~~ 92 (375)
T 3vmk_A 13 SYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWEH 92 (375)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred cceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCccC
Confidence 48999999999999999999988754 37999999999999999999999999999999999999999999998754
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--C-------CCCCCeEEEecccCCcccccceeEcCCCcee
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--P-------GWKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~-------~~~~divIvREntEg~Y~g~e~~~~~~~~~~ 231 (491)
++. ....|++||++|||+||||||+||| +.+|++. + .+++|+|||||||||+|+|.++....+
T Consensus 93 ~~~--~~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~---- 164 (375)
T 3vmk_A 93 LPP--NDQPERGALLPLRGHFELFCNMRPA--KLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGE---- 164 (375)
T ss_dssp SCS--TTSHHHHHHHHHHHHTTCCEEEEEE--ECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECC----
T ss_pred CCc--cccccccchHHHHHHcCCeEEEEEE--eccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccC----
Confidence 321 1123456689999999999999998 6788874 2 246999999999999999987643210
Q ss_pred eEecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHh
Q 011214 232 MVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (491)
Q Consensus 232 l~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~ 310 (491)
.+.+++ ..++|||+++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+||| +
T Consensus 165 -------------------~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva-~ 223 (375)
T 3vmk_A 165 -------------------GENEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVA-K 223 (375)
T ss_dssp -------------------GGGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-T
T ss_pred -------------------CCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHH-H
Confidence 012344 45889999999999999999999999999999999998 7799999999999 6
Q ss_pred hhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccccc
Q 011214 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (491)
Q Consensus 311 eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSA 389 (491)
+|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||
T Consensus 224 eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSA 296 (375)
T 3vmk_A 224 DYP------DVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGSA 296 (375)
T ss_dssp TCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCC
T ss_pred HCC------CceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCCc
Confidence 999 99999999999999999999999 99999999999999999999999999999999886 46999999999
Q ss_pred ccchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCcccc
Q 011214 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYL 468 (491)
Q Consensus 390 Pd~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~ 468 (491)
|| ||||| +|||+|+|||++|||+| +| +.++|++|++||.++|++|++|+||+.+..|. +.+
T Consensus 297 Pd-----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~AV~~~l~~G~~T~Dl~g~~~G~-----~~~ 358 (375)
T 3vmk_A 297 PD-----IAGQG-IANPVAQILSAALLLRHSLK-------LEDAALAIEAAVSKALSDGYLTCELLPASERS-----QAK 358 (375)
T ss_dssp TT-----TTTSS-CSCCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTCCCGGGSCGGGGG-----GCC
T ss_pred hh-----ccCCC-ccCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCCCchhccCCCCC-----Ccc
Confidence 99 99999 99999999999999999 88 57899999999999999999999994111131 269
Q ss_pred CHHHHHHHHHHHHHh
Q 011214 469 NTEEFIDAVATNLGA 483 (491)
Q Consensus 469 sT~ef~daV~~~l~~ 483 (491)
+|+||+|+|+++|+.
T Consensus 359 ~T~e~~~aV~~~l~~ 373 (375)
T 3vmk_A 359 STSQMGDYIAQAIAE 373 (375)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999964
No 16
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=2.5e-103 Score=805.33 Aligned_cols=330 Identities=17% Similarity=0.210 Sum_probs=303.8
Q ss_pred ceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 81 ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
|....++|++||||||||||+++++++|.+.+++|+|+++++|. +||+++|++++++|+++|++||||+++|.. +
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-~ 87 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-Q 87 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH-H
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC-C
Confidence 55556899999999999999999999998889999999999997 799999999999999999999999999942 1
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC-CCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~-~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
++|+|+|++||++||||||+||| +++|++.++++ +|+|||||||||+|+|.++...
T Consensus 88 -------~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~-------------- 144 (349)
T 3blx_A 88 -------TGHGSLNVALRKQLDIYANVALF--KSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESV-------------- 144 (349)
T ss_dssp -------HTCHHHHHHHHHTSCEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECS--------------
T ss_pred -------CCccCchHHHHHHcCCEEEEEEE--eccCCCCCCCCCcCEEEEecCCCCcEeCCceecc--------------
Confidence 25889999999999999999998 68999887775 9999999999999999876431
Q ss_pred CCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHhhhccccc
Q 011214 240 TGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~ 317 (491)
.+++. .++|||+++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||++++||
T Consensus 145 -------------~gva~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp---- 207 (349)
T 3blx_A 145 -------------PGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYP---- 207 (349)
T ss_dssp -------------TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCT----
T ss_pred -------------CCeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCC----
Confidence 23454 58899999999999999999999 578999999999999999999999999966999
Q ss_pred cCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccc-cccccchhh
Q 011214 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH-GTVTRHFRL 395 (491)
Q Consensus 318 ~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~H-GSAPd~~~~ 395 (491)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .||||+| |||||
T Consensus 208 --~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAPd---- 279 (349)
T 3blx_A 208 --DIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGLD---- 279 (349)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC-----
T ss_pred --CeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchhh----
Confidence 99999999999999999999999 99999999999999999999999999999999987 5899999 99999
Q ss_pred ccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCccccCHHHHH
Q 011214 396 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFI 474 (491)
Q Consensus 396 ~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~~~sT~ef~ 474 (491)
||||| +|||+|+||||+|||+|+| +.++|++||+||.++|++| ++|+||| | .++|+||+
T Consensus 280 -iAGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~G~~~T~Dlg----g-------~~~T~e~~ 339 (349)
T 3blx_A 280 -IKGQN-VANPTAMILSSTLMLNHLG-------LNEYATRISKAVHETIAEGKHTTRDIG----G-------SSSTTDFT 339 (349)
T ss_dssp --CCTT-CSCCHHHHHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHSSSSCBGGGT----C-------CBCHHHHH
T ss_pred -hcCCC-CCCcHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCCccCCCcC----C-------CCCHHHHH
Confidence 99999 9999999999999999998 4579999999999999999 6999998 8 58999999
Q ss_pred HHHHHHHHh
Q 011214 475 DAVATNLGA 483 (491)
Q Consensus 475 daV~~~l~~ 483 (491)
|+|+++|++
T Consensus 340 daI~~~l~~ 348 (349)
T 3blx_A 340 NEIINKLST 348 (349)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcc
Confidence 999999953
No 17
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1e-102 Score=819.29 Aligned_cols=365 Identities=21% Similarity=0.211 Sum_probs=309.0
Q ss_pred cceee--cccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeE
Q 011214 80 DRVKV--QNPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVA 148 (491)
Q Consensus 80 ~ki~~--~~~I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~--~lp~etl~aik~~da~ 148 (491)
.|++| .++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+ ++|++++++|+++|++
T Consensus 29 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~ 108 (427)
T 3dms_A 29 FSLNVSDQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVS 108 (427)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEE
T ss_pred CcEeCCCCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEE
Confidence 35555 478999999999999999999887542 379999999999999999999 9999999999999999
Q ss_pred EEccccCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeE
Q 011214 149 IKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVI 224 (491)
Q Consensus 149 LkGav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~ 224 (491)
||||++||.+. +|+|+|++||++||||||+||| +.+|++.++. ++|+|||||||||+|+|.++..
T Consensus 109 l~G~~~tP~~~---------~~~s~~l~LRk~LdLyaNlRPv--~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~ 177 (427)
T 3dms_A 109 IKGPLTTPVGG---------GIRSLNVALRQELDLYVCLRPI--QYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAA 177 (427)
T ss_dssp EECCCCCCC-------------CCHHHHHHHHTTCCEEEEEE--CCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECT
T ss_pred EECCCCCCCCc---------ccCChhHHHHHHhCCeEEEEEe--ecCCCCCCCCCCCCCceEEEEEECCCCEecCccccc
Confidence 99999999754 5889999999999999999997 7888876653 5999999999999999998753
Q ss_pred cCCCceeeE-e-cCCCCCCCceeccccccCCceEEE-EeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHH
Q 011214 225 KGPGKLKMV-F-DPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRF 300 (491)
Q Consensus 225 ~~~~~~~l~-~-~~~~g~~~~~~~~~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglf 300 (491)
..+...+++ | ..+.|... ..+ ..+++.. ++|||+++|||+|+||+||++|+ +|||+|||+||||.|||||
T Consensus 178 ~~~~~~~~~~~~~~~~g~~~-----~~~-~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglf 251 (427)
T 3dms_A 178 ESEQAKKVIKFLQEEMGVKK-----IRF-PQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAF 251 (427)
T ss_dssp TCHHHHHHHHHHHHTSCCCC-----CSC-GGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHH
T ss_pred CCcccccccccccccccccc-----ccc-CCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHH
Confidence 211000000 0 00011000 011 1234444 77999999999999999999995 6899999999999999999
Q ss_pred HHHHHHHHHhhhcc-------------ccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcc
Q 011214 301 KDIFQQVYEERWRQ-------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLG 366 (491)
Q Consensus 301 r~i~~eVa~~eYp~-------------~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslG 366 (491)
+++|+|||+++||+ .++.++|+++|+|||+||||||++|++| ||||+|||||||||++|+++||||
T Consensus 252 r~~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslG 331 (427)
T 3dms_A 252 RDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIG 331 (427)
T ss_dssp HHHHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCcc
Confidence 99999999658995 2456689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHc
Q 011214 367 LMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVET 446 (491)
Q Consensus 367 lapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~ 446 (491)
|+||+|||+++ .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.++|++
T Consensus 332 l~pSanig~~~--a~fEpvHGSAPd-----IAGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~AV~~vl~~ 396 (427)
T 3dms_A 332 IAPGANLSDSV--AMFEATHGTAPK-----YAGKD-YVNPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQ 396 (427)
T ss_dssp TCEEEEECSSC--EEEEECSCCCGG-----GTTSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeCCCc--ceEEeccCChhh-----hcCCC-cCCcHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHc
Confidence 99999999876 589999999999 99999 9999999999999999998 578999999999999999
Q ss_pred CCCchhhhhhccCCCCCCccccCHHHHHHHHHHHH
Q 011214 447 GKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 447 G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
|++|+|||....| ...++|+||+|+|+++|
T Consensus 397 G~~T~Dlgg~~~g-----~~~~~T~e~~daV~~~l 426 (427)
T 3dms_A 397 KRVTYDFARLMEG-----ATQVSCSGFGQVLIENM 426 (427)
T ss_dssp TEECHHHHTTSSS-----CEECCHHHHHHHHHHTT
T ss_pred CCcchhhccccCC-----CCccCHHHHHHHHHHhh
Confidence 9999999822222 13699999999999886
No 18
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=2.3e-103 Score=806.91 Aligned_cols=329 Identities=22% Similarity=0.278 Sum_probs=304.5
Q ss_pred ceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccc
Q 011214 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (491)
Q Consensus 81 ki~~~~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~ 160 (491)
|....++|++||||||||||+++++++|.+.+++|+|+++++|.++ ++||+++|++++++|+++|++||||+++|.+.
T Consensus 17 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~- 94 (354)
T 3blx_B 17 PSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIGK- 94 (354)
T ss_dssp TTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC----
T ss_pred hcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCCc-
Confidence 3334578999999999999999999999888999999999999999 99999999999999999999999999999753
Q ss_pred hhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC-CCeEEEecccCCcccccceeEcCCCceeeEecCCCC
Q 011214 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (491)
Q Consensus 161 ~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~-~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g 239 (491)
+|+|+|++||++||||||+||| +++|++.++++ +|+|||||||||+|+|.++...
T Consensus 95 --------~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~-------------- 150 (354)
T 3blx_B 95 --------GHRSLNLTLRKTFGLFANVRPA--KSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVC-------------- 150 (354)
T ss_dssp ---------CCCHHHHHHHHHTEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECS--------------
T ss_pred --------cccCchHHHHHHcCCEEEEEEe--cccCCCCCCCCCccEEEEecCcCCcccCCccccc--------------
Confidence 5889999999999999999998 68999887775 9999999999999999876431
Q ss_pred CCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHhhhccccc
Q 011214 240 TGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~ 317 (491)
.+++ ..++|||+++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||+ ++||
T Consensus 151 -------------~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva-~eyp---- 212 (354)
T 3blx_B 151 -------------PGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELS-KEYP---- 212 (354)
T ss_dssp -------------TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHG-GGCT----
T ss_pred -------------CCEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHH-HHCC----
Confidence 2345 458899999999999999999999 5789999999999999999999999999 6999
Q ss_pred cCCeEEeeEeHHHHHHHHHhCCCCe---eeeccCCccchhhhhhhhh-cCCcccccccccCCCCcceeeeccccccccch
Q 011214 318 EHSIWYEHRLIDDMVAYAIKSEGGY---VWACKNYDGDVQSDLLAQG-FGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHF 393 (491)
Q Consensus 318 ~~~I~~e~~lVDa~a~~LVk~P~~F---VIvt~NlfGDILSDlaA~l-~GslGlapSanig~d~~~~~fEp~HGSAPd~~ 393 (491)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|++ +|||||+||+|||+++ .||||+||||||
T Consensus 213 --dI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAPd-- 286 (354)
T 3blx_B 213 --DLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAPD-- 286 (354)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCGG--
T ss_pred --CceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChhh--
Confidence 99999999999999999999999 9999999999999999999 9999999999999987 599999999999
Q ss_pred hhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC--CCchhhhhhccCCCCCCccccCHH
Q 011214 394 RLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG--KMTKDLAILVHGPKVSREFYLNTE 471 (491)
Q Consensus 394 ~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G--~~T~DLg~~~~G~~~~~~~~~sT~ 471 (491)
||||| +|||+|+|||++|||+|+| +.++|++||+||.+++++| ++|+||| | .++|+
T Consensus 287 ---iAGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~~~T~Dlg----G-------~~~T~ 344 (354)
T 3blx_B 287 ---IAGQD-KANPTALLLSSVMMLNHMG-------LTNHADQIQNAVLSTIASGPENRTGDLA----G-------TATTS 344 (354)
T ss_dssp ---GTTTT-CCCTHHHHHHHHHHHHHHT-------CHHHHHHHHHTHHHHHTSSTTSSCGGGT----C-------CCCHH
T ss_pred ---hcCCC-ccCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCccCCCcC----C-------CCCHH
Confidence 99999 9999999999999999998 4689999999999999999 7999998 7 58999
Q ss_pred HHHHHHHHHH
Q 011214 472 EFIDAVATNL 481 (491)
Q Consensus 472 ef~daV~~~l 481 (491)
||+|+|+++|
T Consensus 345 e~~dav~~~l 354 (354)
T 3blx_B 345 SFTEAVIKRL 354 (354)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhC
Confidence 9999999864
No 19
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=4.4e-103 Score=815.09 Aligned_cols=346 Identities=18% Similarity=0.188 Sum_probs=303.9
Q ss_pred eecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCc
Q 011214 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 83 ~~~~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 158 (491)
+|.++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 35689999999999999999999887543 79999999999999999999999999999999999999999999987
Q ss_pred cchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--CC------CCCCeEEEecccCCcccccceeEcCCCce
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG------WKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~~------~~~divIvREntEg~Y~g~e~~~~~~~~~ 230 (491)
+.++... .+.++|++||++||||||+||| +.+|++. ++ .++|+|||||||||+|+|.++....++
T Consensus 120 ~~~~~~~---~p~~~ll~LRk~ldLyaNlRP~--k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~-- 192 (405)
T 3r8w_A 120 DNNEKHL---RPEKGLLQIRAALKVFANLRPA--TVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNE-- 192 (405)
T ss_dssp TTSCGGG---SHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECS--
T ss_pred cCCcccc---CcccchHHHHHHhCCeEEEEEe--eccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCC--
Confidence 5432110 1234589999999999999998 6888873 22 259999999999999999987542110
Q ss_pred eeEecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHH
Q 011214 231 KMVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (491)
Q Consensus 231 ~l~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~ 309 (491)
.+.+++ ..++|||+++|||+|+||+||++|++|||+|||+|||+. +|||+++|+||+
T Consensus 193 --------------------~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~-sglf~~~~~eva- 250 (405)
T 3r8w_A 193 --------------------NGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA-SILWRKRVTALA- 250 (405)
T ss_dssp --------------------SSCEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH-HHHHHHHHHHHG-
T ss_pred --------------------CCceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-ccHHHHHHHHHH-
Confidence 012344 458899999999999999999999999999999999994 599999999998
Q ss_pred hhhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccc
Q 011214 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388 (491)
Q Consensus 310 ~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGS 388 (491)
++|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+|||
T Consensus 251 ~eYP------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 323 (405)
T 3r8w_A 251 SEYP------DVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGS 323 (405)
T ss_dssp GGST------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCC
T ss_pred hHCC------CCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCC
Confidence 7999 99999999999999999999999 99999999999999999999999999999999876 4699999999
Q ss_pred cccchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhh--hhhccCCCCCCc
Q 011214 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL--AILVHGPKVSRE 465 (491)
Q Consensus 389 APd~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DL--g~~~~G~~~~~~ 465 (491)
||| ||||| +|||+|+|||++|||+| +|. .++|++||+||.++|++|++|+|| | |.
T Consensus 324 APD-----IAGk~-iANP~A~IlS~amML~~slg~-------~~~A~~Ie~AV~~~l~~G~~T~Dl~~g----G~----- 381 (405)
T 3r8w_A 324 APD-----IAGQD-KANPLATILSAAMLLKYGLGE-------EKAAKRIEDAVLVALNNGFRTGDIYSA----GT----- 381 (405)
T ss_dssp CGG-----GTTTT-CCCCHHHHHHHHHHHHHTTCC-------TTHHHHHHHHHHHHHHTTEECGGGCCT----TS-----
T ss_pred hhh-----hCCCC-CCCcHHHHHHHHHHHHhhCcc-------HHHHHHHHHHHHHHHHcCCcCccccCC----CC-----
Confidence 999 99999 99999999999999999 883 579999999999999999999999 6 62
Q ss_pred cccCHHHHHHHHHHHHHhhhc
Q 011214 466 FYLNTEEFIDAVATNLGAKLR 486 (491)
Q Consensus 466 ~~~sT~ef~daV~~~l~~~~~ 486 (491)
+.++|+||+|+|+++|+++++
T Consensus 382 ~~~~T~e~~~aV~~~l~~~~~ 402 (405)
T 3r8w_A 382 KLVGCKEMGEEVLKSVDSQVP 402 (405)
T ss_dssp EECCHHHHHHHHHHHHC----
T ss_pred cccCHHHHHHHHHHHHHHHhc
Confidence 249999999999999987764
No 20
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-102 Score=822.97 Aligned_cols=340 Identities=22% Similarity=0.254 Sum_probs=315.1
Q ss_pred ccceeec----ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcC-CCCcHHHHHHHHhcCeEEEccc
Q 011214 79 IDRVKVQ----NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCAT 153 (491)
Q Consensus 79 ~~ki~~~----~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg-~~lp~etl~aik~~da~LkGav 153 (491)
-+||.|. ++|++||||||||||+++++++|.+.+++|+|+++++|.+++++|| +++|++++++|+++||+||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 4588887 8999999999999999999999988899999999999999999999 9999999999999999999999
Q ss_pred cCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC---CCCeEEEecccCCcccccceeEcCCCce
Q 011214 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW---KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (491)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~---~~divIvREntEg~Y~g~e~~~~~~~~~ 230 (491)
+||.+. +|+|+|++||++||||||+||| +++|++.+++ .+|+|||||||||+|.|.++...
T Consensus 89 gtP~~~---------~~~s~~l~LRk~LdLyaNlRP~--k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~----- 152 (496)
T 2d1c_A 89 ETPVGY---------GEKSANVTLRKLFETYANVRPV--REFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQT----- 152 (496)
T ss_dssp CCCSSS---------SSCCHHHHHHHHTTCCEEEEEE--ECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEE-----
T ss_pred cCCCcc---------cccChHHHHHHHhCCEEEEEEE--eecCCCCccccCCCccEEEEeeCcCceEeceeEecC-----
Confidence 999743 5899999999999999999997 7889887766 49999999999999999876531
Q ss_pred eeEecCCCCCCCceeccccccCCceEEE-EeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHH
Q 011214 231 KMVFDPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVY 308 (491)
Q Consensus 231 ~l~~~~~~g~~~~~~~~~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~~eVa 308 (491)
.+++.. ++|||+++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||+
T Consensus 153 ----------------------~~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa 210 (496)
T 2d1c_A 153 ----------------------PSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVA 210 (496)
T ss_dssp ----------------------TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ----------------------CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHH
Confidence 245555 6799999999999999999999 5889999999999999999999999998
Q ss_pred HhhhccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccc
Q 011214 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHG 387 (491)
Q Consensus 309 ~~eYp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HG 387 (491)
++|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .||||+||
T Consensus 211 -~eYP------dI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpvHG 281 (496)
T 2d1c_A 211 -QEYP------DIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAVHG 281 (496)
T ss_dssp -TTCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEESSC
T ss_pred -HHCC------CceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCCCC
Confidence 6999 99999999999999999999999 99999999999999999999999999999999987 48999999
Q ss_pred ccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcC-CCchhhhhhccCCCCCCcc
Q 011214 388 TVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREF 466 (491)
Q Consensus 388 SAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G-~~T~DLg~~~~G~~~~~~~ 466 (491)
|||| ||||| +|||+|+|||++|||+|+| +.++|++||+||.++|++| ++|+||| |.. +
T Consensus 282 SAPD-----IAGk~-iANP~A~IlSaamML~hlG-------~~~~A~~Ie~AV~~vl~~G~~~T~DLg----g~~----~ 340 (496)
T 2d1c_A 282 SAPK-----YAGKN-VINPTAVLLSAVMMLRYLE-------EFATADLIENALLYTLEEGRVLTGDVV----GYD----R 340 (496)
T ss_dssp CCTT-----TTTSS-CCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTSSCBHHHH----CTT----T
T ss_pred chhh-----hcCCC-ccCcHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCeeccccC----CCC----C
Confidence 9999 99999 9999999999999999998 4689999999999999999 7999998 620 2
Q ss_pred ccCHHHHHHHHHHHHHhhhc
Q 011214 467 YLNTEEFIDAVATNLGAKLR 486 (491)
Q Consensus 467 ~~sT~ef~daV~~~l~~~~~ 486 (491)
.++|+||+|+|+++|++++.
T Consensus 341 ~~sT~e~~daV~~~L~~~~~ 360 (496)
T 2d1c_A 341 GAKTTEYTEAIIQNLGKTPR 360 (496)
T ss_dssp CBCHHHHHHHHHHTTTCCCS
T ss_pred CcCHHHHHHHHHHHHhhhhh
Confidence 48999999999999976654
No 21
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=3.9e-102 Score=811.58 Aligned_cols=364 Identities=21% Similarity=0.247 Sum_probs=305.9
Q ss_pred ccceeecc--cEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEE
Q 011214 79 IDRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAI 149 (491)
Q Consensus 79 ~~ki~~~~--~I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~L 149 (491)
..|++|++ +|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+|
T Consensus 16 ~~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~L 95 (409)
T 2e0c_A 16 KGKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVL 95 (409)
T ss_dssp SSCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEE
T ss_pred CCeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEE
Confidence 35788864 7999999999999999999887543 38999999999999999999999999999999999999
Q ss_pred EccccCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEc
Q 011214 150 KCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIK 225 (491)
Q Consensus 150 kGav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~ 225 (491)
|||++||.+. +|+|+|++||++||||||+||| +.+|++.++. ++|+|||||||||+|+|.++...
T Consensus 96 kGav~tP~~~---------~~~s~~l~LR~~LdlyanvRPv--~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~ 164 (409)
T 2e0c_A 96 KGPLETPIGK---------GWKSVNVAIRLMLDLYANIRPV--KYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFN 164 (409)
T ss_dssp ECCCC-----------------CHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTT
T ss_pred ECCccCCCcc---------cccChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccC
Confidence 9999999643 5899999999999999999998 5667665443 48999999999999999987532
Q ss_pred CCCceeeE-ecCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHH
Q 011214 226 GPGKLKMV-FDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKD 302 (491)
Q Consensus 226 ~~~~~~l~-~~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~ 302 (491)
.++..++. |.++ +.. ..++ .+++. .++||+++++||+|+||+||++|+ ++||+|||+||||.|||||++
T Consensus 165 ~~~~~~v~~f~~~------~~~-~~~~-~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~ 236 (409)
T 2e0c_A 165 SEEAKKIRDFLRK------ELK-VEIE-DDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFRE 236 (409)
T ss_dssp SHHHHHHHHHHHH------HSC-CCCC-SSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHH
T ss_pred CCcccchhhccch------hcc-ccCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHH
Confidence 11111110 1000 000 0111 24554 477999999999999999999996 679999999999999999999
Q ss_pred HHHHHHHhhhcccc-----------ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccc
Q 011214 303 IFQQVYEERWRQKF-----------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTS 370 (491)
Q Consensus 303 i~~eVa~~eYp~~f-----------~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapS 370 (491)
+|+|||+++||++| +..+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 237 ~~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pS 316 (409)
T 2e0c_A 237 WAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGG 316 (409)
T ss_dssp HHHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEE
T ss_pred HHHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCce
Confidence 99999955999644 23459999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCc
Q 011214 371 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMT 450 (491)
Q Consensus 371 anig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T 450 (491)
+|||++. .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.++|++|++|
T Consensus 317 anig~~~--a~fEp~HGSAPd-----iAGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~T 381 (409)
T 2e0c_A 317 ANIGDEG--GMFEAIHGTAPK-----YAGKN-VANPTGIIKAGELMLRWMG-------WNEAADLIEKAINMAIRDKKVT 381 (409)
T ss_dssp EEEETTE--EEEEESSCCCGG-----GTTTT-CSCTHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEECCCc--eEEecCCCChhh-----hcCCc-ccCcHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcc
Confidence 9999764 599999999999 99999 9999999999999999998 4689999999999999999999
Q ss_pred hhhhhhccCCCCCCccccCHHHHHHHHHHHHH
Q 011214 451 KDLAILVHGPKVSREFYLNTEEFIDAVATNLG 482 (491)
Q Consensus 451 ~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l~ 482 (491)
+|||.+.+| +.++|+||+|+|+++|+
T Consensus 382 ~Dl~g~~g~------~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 382 QDIARFMGV------KALGTKEYADELIKIMD 407 (409)
T ss_dssp HHHHHHHTS------CCCCHHHHHHHHHHHHT
T ss_pred ccccccCCC------CCcCHHHHHHHHHHHHh
Confidence 999743323 26899999999999995
No 22
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=3.2e-102 Score=814.77 Aligned_cols=369 Identities=20% Similarity=0.242 Sum_probs=311.5
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEE
Q 011214 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (491)
Q Consensus 80 ~ki~~~--~~I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~Lk 150 (491)
+|++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+||
T Consensus 12 ~~~~vp~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lk 91 (423)
T 1hqs_A 12 GVLNVPNNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIK 91 (423)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEE
Confidence 577774 55999999999999999999877543 389999999999999999999999999999999999999
Q ss_pred ccccCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcC
Q 011214 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKG 226 (491)
Q Consensus 151 Gav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~ 226 (491)
||++||... +|+|+|++||++||||||+||| +.+||+.+++ ++|+|||||||||+|+|.++. .+
T Consensus 92 Gav~tP~~~---------~~~s~nl~LRk~LdlyanvRPv--~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~-~g 159 (423)
T 1hqs_A 92 GPLTTPVGG---------GIRSLNVALRQELDLFVCLRPV--RYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYA-KG 159 (423)
T ss_dssp CCCCCCSSS---------SSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEEC-TT
T ss_pred CCccCCCCc---------CcCChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCCCCCcEEEEecCCCCeecccccc-cC
Confidence 999999643 6899999999999999999998 6888876665 389999999999999999875 11
Q ss_pred CCceeeEecCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHH
Q 011214 227 PGKLKMVFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIF 304 (491)
Q Consensus 227 ~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~ 304 (491)
.+.....+... + ....++..+++ .+++. .++||+++++||+|+||+||++| +++||+|||+||||.|||+|+++|
T Consensus 160 ~~~~~~v~~~~-~-~~~~~~~~~~~-~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~ 236 (423)
T 1hqs_A 160 SEEVQKLISFL-Q-NELNVNKIRFP-ETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWG 236 (423)
T ss_dssp CHHHHHHHHHH-H-HHSCCCCCSCG-GGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHH
T ss_pred Cccccceeccc-c-ccccccccccC-CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHH
Confidence 11100000000 0 00001111222 34555 48899999999999999999998 578999999999999999999999
Q ss_pred HHHHHhhhccc-c-------------------------ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhh
Q 011214 305 QQVYEERWRQK-F-------------------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDL 357 (491)
Q Consensus 305 ~eVa~~eYp~~-f-------------------------~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDl 357 (491)
+|||+++||+. | ++.+|+++|+|||+|+||||++|++| ||||+|||||||||+
T Consensus 237 ~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~ 316 (423)
T 1hqs_A 237 YELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDA 316 (423)
T ss_dssp HHHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHH
T ss_pred HHHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHH
Confidence 99995599952 1 34459999999999999999999999 999999999999999
Q ss_pred hhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHH
Q 011214 358 LAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLE 437 (491)
Q Consensus 358 aA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie 437 (491)
+|+++|||||+||+|||++....||||+|||||| ||||| +|||+|+|||++|||+||| +.++|++|+
T Consensus 317 aA~l~GslGl~pSanigp~~~~alfEp~HGSAPd-----iAGk~-iANP~A~IlS~amML~hlg-------~~~~A~~Ie 383 (423)
T 1hqs_A 317 LAAQVGGIGIAPGANINYETGHAIFEATHGTAPK-----YAGLD-KVNPSSVILSGVLLLEHLG-------WNEAADLVI 383 (423)
T ss_dssp HHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGG-----GTTTT-CSCCHHHHHHHHHHHHHHT-------CHHHHHHHH
T ss_pred HHhhcCCcccCccceecCCCCceEEecCCCChhh-----hCCCC-CcCcHHHHHHHHHHHHHcC-------CHHHHHHHH
Confidence 9999999999999999952224699999999999 99999 9999999999999999998 578999999
Q ss_pred HHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHHH
Q 011214 438 AACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 438 ~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
+||.++|++|++|+|||.+.+|. ..++|+||+|+|+++|
T Consensus 384 ~Av~~~l~~g~~T~Dl~g~~~g~-----~~~~T~e~~daV~~~l 422 (423)
T 1hqs_A 384 KSMEKTIASKVVTYDFARLMDGA-----TEVKCSEFGEELIKNM 422 (423)
T ss_dssp HHHHHHHHTTEECHHHHTTSSSC-----EECCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcccccccccCCC-----CCcCHHHHHHHHHHhh
Confidence 99999999999999998322221 2589999999999876
No 23
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=2.9e-102 Score=801.28 Aligned_cols=336 Identities=18% Similarity=0.165 Sum_probs=302.0
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccch
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~ 161 (491)
.+|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+.++
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 58999999999999999999988765 89999999999999999999999999999999999999999999976543
Q ss_pred hhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--CCC-------CCCeEEEecccCCcccccceeEcCCCceee
Q 011214 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~~~-------~~divIvREntEg~Y~g~e~~~~~~~~~~l 232 (491)
+ .++++ ..++|++||++||||||+||| +.+|++. +++ ++|+|||||||||+|+|.++...
T Consensus 93 ~-~~~r~-~~~~~l~LRk~ldlyaN~RP~--~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~------- 161 (366)
T 1vlc_A 93 P-PEKRP-EIGGLLALRKMLNLYANIRPI--KVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLD------- 161 (366)
T ss_dssp C-STTSH-HHHTHHHHHHHTTCCEEEEEE--ECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEEC-------
T ss_pred C-cccCc-ccchhHHHHHHhCCEEEEEEc--cccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccC-------
Confidence 3 11111 122499999999999999998 6788876 344 38999999999999999887531
Q ss_pred EecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhh
Q 011214 233 VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (491)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~e 311 (491)
.+++ ..++|||+++|||+|+||+||++|++|||+|||+|||| +||||+++|+||+ ++
T Consensus 162 --------------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva-~e 219 (366)
T 1vlc_A 162 --------------------EEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVA-RE 219 (366)
T ss_dssp --------------------SSCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred --------------------CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHH-HH
Confidence 1233 45889999999999999999999988999999999999 9999999999999 69
Q ss_pred hccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccc
Q 011214 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (491)
Q Consensus 312 Yp~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAP 390 (491)
|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+| +. .||||+|||||
T Consensus 220 yp------dV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~~--alfEpvHGSAP 290 (366)
T 1vlc_A 220 YP------DVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-DK--NLYEPAGGSAP 290 (366)
T ss_dssp CT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-SS--EEEEESSCCCT
T ss_pred CC------CceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-Cc--eeeecCCCchh
Confidence 99 99999999999999999999999 99999999999999999999999999999999 54 69999999999
Q ss_pred cchhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccC
Q 011214 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLN 469 (491)
Q Consensus 391 d~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~s 469 (491)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+|||. +|. +.++
T Consensus 291 d-----IAGk~-iANP~A~IlS~ammL~~slg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg~--~gg-----~~~~ 350 (366)
T 1vlc_A 291 D-----IAGKN-IANPIAQILSLAMMLEHSFG-------MVEEARKIERAVELVIEEGYRTRDIAE--DPE-----KAVS 350 (366)
T ss_dssp T-----TTTTT-CSCCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTCCCGGGCS--SGG-----GCCC
T ss_pred h-----cCCCC-ccCcHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccccccc--CCC-----CCcC
Confidence 9 99999 99999999999999999 98 578999999999999999999999962 121 1389
Q ss_pred HHHHHHHHHHHHHh
Q 011214 470 TEEFIDAVATNLGA 483 (491)
Q Consensus 470 T~ef~daV~~~l~~ 483 (491)
|+||+|+|+++|+.
T Consensus 351 T~e~~daV~~~l~~ 364 (366)
T 1vlc_A 351 TSQMGDLICKKLEE 364 (366)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999964
No 24
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.7e-102 Score=810.55 Aligned_cols=363 Identities=21% Similarity=0.210 Sum_probs=311.8
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccc
Q 011214 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCAT 153 (491)
Q Consensus 80 ~ki~~~--~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav 153 (491)
+|++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+||||+
T Consensus 20 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav 99 (412)
T 2iv0_A 20 GKLIVPDNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPL 99 (412)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCC
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCc
Confidence 588886 45999999999999999999988654 799999999999999999999999999999999999999999
Q ss_pred cCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeEcCCCc
Q 011214 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGK 229 (491)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~~~~~~ 229 (491)
+||.+. +|+|+|++||++||||||+||| +.+|++.++. ++|+|||||||||+|+|.++....++.
T Consensus 100 ~tP~~~---------~~~s~~l~LR~~Ldlyan~RPv--~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~ 168 (412)
T 2iv0_A 100 TTPVGG---------GYRSLNVTIRQVLDLYANVRPV--YYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEA 168 (412)
T ss_dssp CCCSSS---------SSSHHHHHHHHHTTCCEEEEEE--ECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHH
T ss_pred cCCCCc---------cccChhHHHHHHcCCeEEEEEE--EecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccc
Confidence 999643 5899999999999999999998 5677765543 389999999999999999875321111
Q ss_pred eee-EecCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHH
Q 011214 230 LKM-VFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQ 306 (491)
Q Consensus 230 ~~l-~~~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglfr~i~~e 306 (491)
.++ .|.+. +.. .+++ .+++. .++||+++++||+|+||+||++|+ ++||+|||+||||.|||+|+++|+|
T Consensus 169 ~~v~~~~~~------~~~-~~~~-~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~e 240 (412)
T 2iv0_A 169 LKLIRFLKN------EFG-VTIR-EDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYE 240 (412)
T ss_dssp HHHHHHHHH------HHC-CCCC-TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHH
T ss_pred cchhhcccc------ccc-ccCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHH
Confidence 000 00000 000 0111 23444 477999999999999999999996 6799999999999999999999999
Q ss_pred HHHhhhcccc--------------ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCccccccc
Q 011214 307 VYEERWRQKF--------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSV 371 (491)
Q Consensus 307 Va~~eYp~~f--------------~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSa 371 (491)
||+++||++| +..+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+
T Consensus 241 va~~eypd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsa 320 (412)
T 2iv0_A 241 VAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGS 320 (412)
T ss_dssp HHHHHSTTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEE
T ss_pred HHHHhCCCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceE
Confidence 9955999654 23459999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCch
Q 011214 372 LLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTK 451 (491)
Q Consensus 372 nig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~ 451 (491)
|||++. .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.++|++|++|+
T Consensus 321 nig~~~--a~fEp~HGSAPd-----iAGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~ 385 (412)
T 2iv0_A 321 NIGDGI--GVFEPVHGSAPK-----YAGQN-KVNPTAEILTGALMFEYIG-------WKDASEMIKKAVEMTISSGIVTY 385 (412)
T ss_dssp EEETTE--EEEEESSCCCST-----TTTSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHTTEECH
T ss_pred EECCCc--eEEeCCCCChhh-----cCCCc-ccCcHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCccc
Confidence 999654 599999999999 99999 9999999999999999998 46899999999999999999999
Q ss_pred hhhhhccCCCCCCccccCHHHHHHHHHHHHH
Q 011214 452 DLAILVHGPKVSREFYLNTEEFIDAVATNLG 482 (491)
Q Consensus 452 DLg~~~~G~~~~~~~~~sT~ef~daV~~~l~ 482 (491)
|||.+.+| +.++|+||+|+|+++|+
T Consensus 386 Dl~~~~G~------~~~~T~e~~daV~~~l~ 410 (412)
T 2iv0_A 386 DIHRHMGG------TKVGTREFAEAVVENLQ 410 (412)
T ss_dssp HHHHHHCS------EECCHHHHHHHHHHHHH
T ss_pred ccccccCC------CCcCHHHHHHHHHHHHh
Confidence 99743313 25899999999999995
No 25
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=2.9e-102 Score=801.03 Aligned_cols=341 Identities=22% Similarity=0.250 Sum_probs=301.2
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccch
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~----~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~ 161 (491)
++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.++.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 68999999999999999999988654 79999999999999999999999999999999999999999999987644
Q ss_pred hhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCC--CCC------CCCeEEEecccCCcccccceeEcCCCceeeE
Q 011214 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (491)
Q Consensus 162 ~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~--~~~------~~divIvREntEg~Y~g~e~~~~~~~~~~l~ 233 (491)
+. ++.+ +++ |++||++||||||+||| +.+|+++ ++. ++|+|||||||||+|+|.++...
T Consensus 82 ~~-~~~~-e~~-ll~lRk~ldlyanvRP~--~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~-------- 148 (358)
T 1a05_A 82 PP-AKRP-EQG-LLRLRKGLDLYANLRPA--QIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLE-------- 148 (358)
T ss_dssp CG-GGSH-HHH-HHHHHHHHTCCEEEEEE--ECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEE--------
T ss_pred Cc-cccc-hhh-HHHHHHHcCCEEEEEEE--EecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccc--------
Confidence 31 1111 334 89999999999999998 6788874 222 38999999999999999854221
Q ss_pred ecCCCCCCCceeccccccCCceE-EEEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhh
Q 011214 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (491)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eY 312 (491)
.. ++.+++ ..++|||+++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||| ++|
T Consensus 149 -~~--------------~~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 211 (358)
T 1a05_A 149 -VI--------------DGKRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVA-RDY 211 (358)
T ss_dssp -EE--------------TTEEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGC
T ss_pred -cC--------------CCCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHC
Confidence 00 012344 45889999999999999999999988999999999999 8999999999999 799
Q ss_pred ccccccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeecccccccc
Q 011214 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (491)
Q Consensus 313 p~~f~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd 391 (491)
| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+||| ++ .+||||+||||||
T Consensus 212 p------dI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPd 283 (358)
T 1a05_A 212 P------DVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPD 283 (358)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGG
T ss_pred C------CceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhH
Confidence 9 99999999999999999999999 99999999999999999999999999999999 44 4799999999999
Q ss_pred chhhccCCCCCccCchhHHHHHHHHHHh-hcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCH
Q 011214 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (491)
Q Consensus 392 ~~~~~iaGk~~iANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT 470 (491)
||||| +|||+|+|||++|||+| || +.++|++|++||.++|++|++|+||+. .|. +.++|
T Consensus 284 -----iAGk~-iANP~A~IlS~ammL~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~g--~g~-----~~~~T 343 (358)
T 1a05_A 284 -----IAGQD-KANPLATILSVAMMLRHSLN-------AEPWAQRVEAAVQRVLDQGLRTADIAA--PGT-----PVIGT 343 (358)
T ss_dssp -----GTTTT-CSCCHHHHHHHHHHHHHTSS-------CHHHHHHHHHHHHHHHHTTCCCGGGCC--TTS-----CCCCH
T ss_pred -----hcCCC-ccCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCccccc--CCC-----CCcCH
Confidence 99999 99999999999999999 88 578999999999999999999999961 021 13899
Q ss_pred HHHHHHHHHHHHhh
Q 011214 471 EEFIDAVATNLGAK 484 (491)
Q Consensus 471 ~ef~daV~~~l~~~ 484 (491)
+||+|+|+++|+++
T Consensus 344 ~e~~daV~~~l~~~ 357 (358)
T 1a05_A 344 KAMGAAVVNALNLK 357 (358)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999654
No 26
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=7.9e-102 Score=791.90 Aligned_cols=329 Identities=19% Similarity=0.186 Sum_probs=298.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEccccCCCccchhhhc
Q 011214 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (491)
Q Consensus 86 ~~I~vi~GDgIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~ 165 (491)
++|++||||||||||+++++++|.+...+|+|+++++|++++++||+++|++++++|+++|++||||++||+.+. +
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~----~ 77 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS----G 77 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT----T
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC----c
Confidence 589999999999999999999886654469999999999999999999999999999999999999999995321 1
Q ss_pred cccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCCC----CCeEEEecccCCcccccceeEcCCCceeeEecCCCCCC
Q 011214 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK----KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (491)
Q Consensus 166 l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~~----~divIvREntEg~Y~g~e~~~~~~~~~~l~~~~~~g~~ 241 (491)
.+|+|+|++||++||||||+||| +++|++.++++ +|+|||||||||+|+|.++... +++
T Consensus 78 --~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~g~------------ 140 (337)
T 1w0d_A 78 --VLERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VGT------------ 140 (337)
T ss_dssp --HHHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TTS------------
T ss_pred --ccccchHHHHHHHcCCEEEEEEe--ecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-CCC------------
Confidence 13678999999999999999998 68898877664 8999999999999999987642 110
Q ss_pred CceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhhccccccCC
Q 011214 242 PVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (491)
Q Consensus 242 ~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r~~kVt~v~KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~ 320 (491)
..+++. .++|||+++|||+|+||+||++|++|||+|||+||||.|||||+++|+||| ++|| +
T Consensus 141 ----------~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~eyp------~ 203 (337)
T 1w0d_A 141 ----------PNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECYP------D 203 (337)
T ss_dssp ----------TTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTCT------T
T ss_pred ----------CCCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHCC------c
Confidence 124554 588999999999999999999998899999999999999999999999999 6999 9
Q ss_pred eEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCc-ceeeeccccccccchhhccC
Q 011214 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQK 398 (491)
Q Consensus 321 I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~-~~~fEp~HGSAPd~~~~~ia 398 (491)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++. ..||||+|||||| ||
T Consensus 204 i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPd-----iA 278 (337)
T 1w0d_A 204 VEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IA 278 (337)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GT
T ss_pred eEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhh-----hC
Confidence 9999999999999999999999 999999999999999999999999999999999762 5799999999999 99
Q ss_pred CCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHH
Q 011214 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (491)
Q Consensus 399 Gk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~ 478 (491)
||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| | |. .++|+||+|+|+
T Consensus 279 Gk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g------g----g~------~~~T~e~~~av~ 334 (337)
T 1w0d_A 279 GQG-IADPTAAIMSVALLLSHLG-------EHDAAARVDRAVEAHLATR------G----SE------RLATSDVGERIA 334 (337)
T ss_dssp TSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHC------T----TC------CCCHHHHHHHHH
T ss_pred CCC-CcCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcC------C----CC------CcCHHHHHHHHH
Confidence 999 9999999999999999998 5789999999999999998 5 62 479999999999
Q ss_pred HHH
Q 011214 479 TNL 481 (491)
Q Consensus 479 ~~l 481 (491)
++|
T Consensus 335 ~~l 337 (337)
T 1w0d_A 335 AAL 337 (337)
T ss_dssp HTC
T ss_pred hhC
Confidence 864
No 27
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.3e-101 Score=810.81 Aligned_cols=365 Identities=23% Similarity=0.217 Sum_probs=310.4
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeE
Q 011214 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVA 148 (491)
Q Consensus 80 ~ki~~~--~~I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~--~lp~etl~aik~~da~ 148 (491)
+|++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+ ++|++++++|+++||+
T Consensus 19 ~~~~vp~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~ 98 (429)
T 2d4v_A 19 GVLQVPDQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVA 98 (429)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEE
T ss_pred CeEEcCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEE
Confidence 477774 55999999999999999999887543 389999999999999999999 9999999999999999
Q ss_pred EEccccCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCCC----CCCeEEEecccCCcccccceeE
Q 011214 149 IKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVI 224 (491)
Q Consensus 149 LkGav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~~----~~divIvREntEg~Y~g~e~~~ 224 (491)
||||++||... +|+|+|++||++||||||+||| +.+|++.++. ++|+|||||||||+|+|.++..
T Consensus 99 lkGav~tP~~~---------~~~s~~l~LRk~LdLyanvRPv--~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~ 167 (429)
T 2d4v_A 99 IKGPLETPVGG---------GIRSLNVAMRQDLDLYVCLRPV--RYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPA 167 (429)
T ss_dssp EECCCCCCSSS---------SSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECT
T ss_pred EECCccCCCcc---------cccChhHHHHHHcCCEEEEEEE--EecCCCCCCCCCcCCCCEEEEEeCCCCeecCccccc
Confidence 99999999643 5899999999999999999998 5677765543 3899999999999999998753
Q ss_pred cCCCceee-EecC-CCCCCCceeccccccCCceEEE-EeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHH
Q 011214 225 KGPGKLKM-VFDP-EDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRF 300 (491)
Q Consensus 225 ~~~~~~~l-~~~~-~~g~~~~~~~~~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r~-~kVt~v~KaNIlk~tdglf 300 (491)
..++..++ .|.+ +.| ++..+|+ .+++.. .+||++++|||+|+||+||++|+ +|||+|||+||||.|||||
T Consensus 168 ~~~~~~~v~~~~~~~~~-----~~~~~~~-~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf 241 (429)
T 2d4v_A 168 GSPEAEKIIRFLREEMG-----VTKIRFP-DSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGF 241 (429)
T ss_dssp TCHHHHHHHHHHHHTSC-----CCCCSCG-GGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHH
T ss_pred CCcccccceeccccccc-----cccccCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHH
Confidence 21111111 1111 111 1112222 245544 77999999999999999999995 6799999999999999999
Q ss_pred HHHHHHHHHhhhccccc--------------------------cCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccch
Q 011214 301 KDIFQQVYEERWRQKFE--------------------------EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDV 353 (491)
Q Consensus 301 r~i~~eVa~~eYp~~f~--------------------------~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDI 353 (491)
+++|+|||+++||+.|. +.+|+++|+|||+|+||||++|++| ||||+||||||
T Consensus 242 ~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDI 321 (429)
T 2d4v_A 242 RDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDY 321 (429)
T ss_dssp HHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHH
T ss_pred HHHHHHHHHHhCCCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHH
Confidence 99999999559996441 2349999999999999999999999 99999999999
Q ss_pred hhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHH
Q 011214 354 QSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFV 433 (491)
Q Consensus 354 LSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A 433 (491)
|||++|+++|||||+||+|||++. .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|
T Consensus 322 LSD~aA~l~GslGl~pSanig~~~--a~fEpvHGSAPd-----iAGk~-iANP~A~IlS~amML~hlg-------~~~~A 386 (429)
T 2d4v_A 322 VSDALAAEVGGIGMAPGANLSDTH--AIFEATHGTAPD-----IAGQG-KANPSSLILSAVMMLEHLG-------WGEAA 386 (429)
T ss_dssp HHHHHHHHTTCGGGCCCEEECSSC--EEEECSCCCCTT-----TTTTT-CCCCHHHHHHHHHHHHHTT-------CHHHH
T ss_pred HHHHHHHhcCCHhhcCeeEECCCc--eEEecCCCChhH-----hcCCC-CcCcHHHHHHHHHHHHHcC-------CHHHH
Confidence 999999999999999999999765 599999999999 99999 9999999999999999998 46899
Q ss_pred HHHHHHHHHHHHcCCCchhhhhhccCCCCCCccccCHHHHHHHHHHHH
Q 011214 434 QKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (491)
Q Consensus 434 ~~Ie~AV~~~l~~G~~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l 481 (491)
++|++||.++|++|++|+|||.+.+|. +.++|+||+|+|+++|
T Consensus 387 ~~Ie~Av~~~l~~g~~T~Dlg~~~~g~-----~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 387 QAIVAAMNATIAAGEVTGDLAALRGDV-----PALSTTEFTAALIRRF 429 (429)
T ss_dssp HHHHHHHHHHHHTTCEEHHHHTTCTTC-----CEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCccccccccCCCC-----CCcCHHHHHHHHHhhC
Confidence 999999999999999999998333342 2489999999999764
No 28
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=4.4e-101 Score=808.01 Aligned_cols=364 Identities=20% Similarity=0.179 Sum_probs=308.3
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEE
Q 011214 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (491)
Q Consensus 80 ~ki~~~--~~I~vi~GDgIGpeI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~~~tg~~lp~etl~aik~~da~Lk 150 (491)
.+++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+||
T Consensus 28 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~Lk 107 (435)
T 1tyo_A 28 GSLRVPDNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALK 107 (435)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEE
T ss_pred CeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEE
Confidence 355553 56999999999999999999887543 389999999999999999999999999999999999999
Q ss_pred ccccCCCccchhhhccccCCCCccHHHHhhcCceEEEEeeecccCCCCCCC----CCCCeEEEecccCCcccccceeEcC
Q 011214 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKG 226 (491)
Q Consensus 151 Gav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLyanvRPi~~k~~p~~~~~----~~~divIvREntEg~Y~g~e~~~~~ 226 (491)
||++||.+. +|+|+|++||++||||||+|||+ .+ ++.++ +++|+|||||||||+|+|.++.. +
T Consensus 108 Gav~tP~~~---------~~~s~~l~LRk~LdlyanlRPv~--~~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~-~ 174 (435)
T 1tyo_A 108 GPLETPVGT---------GYRSLNVAIRQALDLYANIRPVR--YY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPH-D 174 (435)
T ss_dssp CCCCCCTTS---------CTTHHHHHHHHHHTCCEEEEEEE--CC-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECT-T
T ss_pred CCccCCCcc---------cccChhHHHHHHcCCEEEeEEEE--ec-CCCCCCCCcCCCcEEEEecCCCCeeccccccc-C
Confidence 999999643 58999999999999999999985 44 54333 35999999999999999998742 1
Q ss_pred CCceeeEecCCCCCCCceeccccccCCceEE-EEeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHH
Q 011214 227 PGKLKMVFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIF 304 (491)
Q Consensus 227 ~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-~~kVt~v~KaNIlk~tdglfr~i~ 304 (491)
.+....++.. ..+.....+ ..+++. .++||+++++||+|+||+||++| +++||+|||+||||.|||||+++|
T Consensus 175 ~~~~~~v~~~-----~~~~~~~~~-~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~ 248 (435)
T 1tyo_A 175 SPEAARIRRF-----LAEEFGISI-REDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWA 248 (435)
T ss_dssp SHHHHHHHHH-----HHHHHCCCC-CTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHH
T ss_pred Cccccceecc-----chhhccccC-CCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHH
Confidence 1100000000 000000001 134554 58899999999999999999998 578999999999999999999999
Q ss_pred HHHHHhhhcc-cc-------------ccCCeEEeeEeHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCccccc
Q 011214 305 QQVYEERWRQ-KF-------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMT 369 (491)
Q Consensus 305 ~eVa~~eYp~-~f-------------~~~~I~~e~~lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlap 369 (491)
+|||+++||+ .| ++.+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+|
T Consensus 249 ~eva~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlap 328 (435)
T 1tyo_A 249 YEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAA 328 (435)
T ss_dssp HHHHHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCE
T ss_pred HHHHHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCc
Confidence 9999559996 23 34459999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHHHHHHH-HhhcccCcchhHHHHHHHHHHHHHHHHHcCC
Q 011214 370 SVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGL-EHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (491)
Q Consensus 370 Sanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL-~hlg~ld~~~~l~~~A~~Ie~AV~~~l~~G~ 448 (491)
|+|||+++ .||||+|||||| ||||| +|||+|+|||++||| +||| +.++|++|++||.++|++|+
T Consensus 329 Sanig~~~--a~fEpvHGSAPd-----iAGk~-iANP~A~IlS~amML~~hlg-------~~~~A~~Ie~Av~~~l~~g~ 393 (435)
T 1tyo_A 329 GMNMGDGI--AVAEPVHGTAPK-----YAGKD-LINPSAEILSASLLIGEFMG-------WREVKSIVEYAIRKAVQSKK 393 (435)
T ss_dssp EEEECSSC--EEEEESSCCCGG-----GTTSS-CSCCHHHHHHHHHHHHTTSC-------CHHHHHHHHHHHHHHHHTTC
T ss_pred eeeECCCc--eeeecCCCChHH-----hcCCC-CcCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCC
Confidence 99999877 489999999999 99999 999999999999999 9998 57899999999999999999
Q ss_pred CchhhhhhccCCCCCCccccCHHHHHHHHHHHHH
Q 011214 449 MTKDLAILVHGPKVSREFYLNTEEFIDAVATNLG 482 (491)
Q Consensus 449 ~T~DLg~~~~G~~~~~~~~~sT~ef~daV~~~l~ 482 (491)
+|+|||.+.+|. +.++|+||+|+|+++|+
T Consensus 394 ~T~Dlgg~~~g~-----~~~~T~e~~daV~~~l~ 422 (435)
T 1tyo_A 394 VTQDLARHMPGV-----QPLRTSEYTETLIAYID 422 (435)
T ss_dssp CBHHHHTTSTTC-----CCBCHHHHHHHHHHHHH
T ss_pred cCccccccCCCC-----CCcCHHHHHHHHHHHHh
Confidence 999998333332 35899999999999995
No 29
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=97.65 E-value=0.00094 Score=71.85 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=148.4
Q ss_pred ccCCccccccee--EcCCCceeeEecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCC-EEEEe
Q 011214 212 AFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLST 288 (491)
Q Consensus 212 ntEg~Y~g~e~~--~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~k-Vt~v~ 288 (491)
+.-.+|...|.. +...|+..++ ...|. .+.-++...++++..+-.-+.-|+-.++.|.+.||..+.+ |.-.|
T Consensus 415 qKAEEYGSHdKTFei~~~G~v~vv--d~~G~---vl~eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD 489 (741)
T 1itw_A 415 QKAEEYGSHDKTFQIPADGVVRVT--DESGK---LLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLD 489 (741)
T ss_dssp TTCGGGGCGGGEEECSSSEEEEEE--ETTCC---EEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHhCCCCcceECCCCceEEEE--eCCCC---EEEEccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 345678877744 4555555544 23342 2222333346787666677889999999999999999966 44445
Q ss_pred CCccccccchHHHHHHHHHHHhhhccccccCCeEEeeEe-HHHHHHHH--HhCCCCeeeeccCCccchhhhhhhhh--cC
Q 011214 289 KNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-IDDMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG--FG 363 (491)
Q Consensus 289 KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~l-VDa~a~~L--Vk~P~~FVIvt~NlfGDILSDlaA~l--~G 363 (491)
+.-. -| .++.++|- .|=.+..-.|+.+.-+- ++++-.-| +++-..-+-||.|..=|+|+||.--| --
T Consensus 490 ~~Ra---HD---a~lI~kV~--~yL~~hdt~GLdi~Im~p~~A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGT 561 (741)
T 1itw_A 490 PARA---HD---AQVIAKVE--RYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGT 561 (741)
T ss_dssp TTSH---HH---HHHHHHHH--HHHTTSCCTTCCEEEECHHHHHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSC
T ss_pred CCCc---cH---HHHHHHHH--HHHHhcCCCCCceEeeCHHHHHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhcc
Confidence 4322 12 45556662 45444444577776664 56655444 44544448899999999999999843 33
Q ss_pred CcccccccccCCCCcceeeec-cccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHH
Q 011214 364 SLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIE 442 (491)
Q Consensus 364 slGlapSanig~d~~~~~fEp-~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~ 442 (491)
|-=|..=.=+=..| ++||. +.||||+|..|.+.-.--.=+.+|-+||.+.-|+|+++..+|+.-.-.|+.|.+|..+
T Consensus 562 SAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLRWDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~ 639 (741)
T 1itw_A 562 SAKMLSIVPLMSGG--GLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGK 639 (741)
T ss_dssp SSSSEEEEEBTTSC--EEEESCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccchhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 32222111122233 58999 5689999987644221125688999999999999999998899999999999999999
Q ss_pred HHHcCC
Q 011214 443 AVETGK 448 (491)
Q Consensus 443 ~l~~G~ 448 (491)
.|++++
T Consensus 640 ~L~n~K 645 (741)
T 1itw_A 640 ILDNNK 645 (741)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 998875
No 30
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=97.63 E-value=0.00096 Score=71.77 Aligned_cols=222 Identities=16% Similarity=0.186 Sum_probs=147.9
Q ss_pred ccCCccccccee--EcCCCceeeEecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCC-EEEEe
Q 011214 212 AFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLST 288 (491)
Q Consensus 212 ntEg~Y~g~e~~--~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~k-Vt~v~ 288 (491)
+.-.+|...|.. +...|+..++ ...|. .+.-++...++++..+-.-+.-|+-.++.|.+.||..+.+ |.-.|
T Consensus 411 qKAEEYGSHdKTFei~~~G~v~vv--d~~G~---vl~eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD 485 (738)
T 2b0t_A 411 QKAEEYGSHDKTFRIEADGVVQVV--SSNGD---VLIEHDVEANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLD 485 (738)
T ss_dssp TTCGGGGCGGGEEECCSSEEEEEE--CTTSC---EEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred HHHHHhCCCCcceECCCCceEEEE--eCCCC---EEEeccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 345678877744 4444554444 33342 2222333346787666677889999999999999999966 44445
Q ss_pred CCccccccchHHHHHHHHHHHhhhccccccCCeEEeeEe-HHHHHHHH--HhCCCCeeeeccCCccchhhhhhhhh--cC
Q 011214 289 KNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-IDDMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG--FG 363 (491)
Q Consensus 289 KaNIlk~tdglfr~i~~eVa~~eYp~~f~~~~I~~e~~l-VDa~a~~L--Vk~P~~FVIvt~NlfGDILSDlaA~l--~G 363 (491)
+.-. -| .++.++|- .|=.+..-.|+.+.-+- ++++-.-| +++-..-+-||.|..=|+|+||.--| --
T Consensus 486 ~~Ra---HD---a~lI~kV~--~yL~~hdt~GLdi~Im~p~~A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGT 557 (738)
T 2b0t_A 486 PERA---HD---RNLASLVE--KYLADHDTEGLDIQILSPVEATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGT 557 (738)
T ss_dssp TTCH---HH---HHHHHHHH--HHHTTSCCTTCCEEEECHHHHHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSC
T ss_pred CCCc---cH---HHHHHHHH--HHHHhcCCCCCceEeeCHHHHHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhcc
Confidence 4322 12 45556662 45444444577776664 56655444 44544448899999999999999843 33
Q ss_pred CcccccccccCCCCcceeeec-cccccccchhhccCCCCCccCchhHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHH
Q 011214 364 SLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIE 442 (491)
Q Consensus 364 slGlapSanig~d~~~~~fEp-~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~ 442 (491)
|-=|..=.=+=..| ++||. +.||||+|..|.+.-.--.=+.+|-+||.+.-|+|+++..+|+.-.-.|+.|.+|..+
T Consensus 558 SAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLRWDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~ 635 (738)
T 2b0t_A 558 SAKMLSVVPLMAGG--GLFETGAGGSAPKHVQQVQEENHLRWDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEK 635 (738)
T ss_dssp SSSCEEEEEBTTSC--EEEECCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred chhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccchhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 32222111122233 58999 5689999987644221125688999999999999999988898899999999999999
Q ss_pred HHHcCC
Q 011214 443 AVETGK 448 (491)
Q Consensus 443 ~l~~G~ 448 (491)
.|++++
T Consensus 636 ~L~n~K 641 (738)
T 2b0t_A 636 LLNEEK 641 (738)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 998875
No 31
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=87.31 E-value=0.33 Score=49.45 Aligned_cols=139 Identities=14% Similarity=0.020 Sum_probs=77.8
Q ss_pred eeCHHHHHHHHHHHHHHHHh-CC--CCEEEEeCCccccccchHHH-H---HHHHHHHhhhccccccCCeEE-eeEeHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFS-KK--WPLYLSTKNTILKKYDGRFK-D---IFQQVYEERWRQKFEEHSIWY-EHRLIDDM 331 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~-r~--~kVt~v~KaNIlk~tdglfr-~---i~~eVa~~eYp~~f~~~~I~~-e~~lVDa~ 331 (491)
.+|.+.+.+.++...+--++ -+ ++-..|-==|==.--+|+|= | +..-.- ++.. +.||.+ --.=-|.+
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai-~~~r----~~Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCL-ERLR----GEGLDLIGPLPADTL 248 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHH-HHHH----TTTCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHH-HHHH----HCCCceeCCCCchhh
Confidence 38999999999988875554 34 34344433443222245552 1 111111 1121 126766 45556777
Q ss_pred HHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHH
Q 011214 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (491)
Q Consensus 332 a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~I 410 (491)
-.+-.+ ++| ++|| ||=| .+---+=-+|+--+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 249 F~~~~~--~~~D~vla--MYHD----QGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkG-~A~~~Sl~ 314 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA--MYHD----QGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALD-----LAGSG-RIDSGSLQ 314 (328)
T ss_dssp TSHHHH--TTCSEEEE--SSHH----HHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGG-----GTTTC-CCCCHHHH
T ss_pred cccccc--cCCCEEEE--cccc----cccHhHhhcccCcceEEecCCCEEEecCCCCcccc-----ccCCC-CCChHHHH
Confidence 666555 477 4443 3433 33322333444456665421100112589999999 99999 99999999
Q ss_pred HHHHHHH
Q 011214 411 FAWTRGL 417 (491)
Q Consensus 411 lS~ammL 417 (491)
-|.-++.
T Consensus 315 ~Ai~~A~ 321 (328)
T 1yxo_A 315 VALETAY 321 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8855444
No 32
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=87.14 E-value=0.34 Score=49.49 Aligned_cols=135 Identities=10% Similarity=-0.033 Sum_probs=78.0
Q ss_pred eeCHHHHHHHHHHHHHHHHh-CC--C-CEEEEeCCccccccchHH--------HHHHHHHHHhhhccccccCCeEE-eeE
Q 011214 260 YNVDESIRAFAESSMSLAFS-KK--W-PLYLSTKNTILKKYDGRF--------KDIFQQVYEERWRQKFEEHSIWY-EHR 326 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~-r~--~-kVt~v~KaNIlk~tdglf--------r~i~~eVa~~eYp~~f~~~~I~~-e~~ 326 (491)
.+|.+.+.+.++.+.+--++ -+ + |+-+.- =|==.--.|+| +-..++..+ .||.+ -.+
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~lr~---------~Gi~~~GP~ 248 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTLRQ---------QGINLIGPL 248 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHHHH---------TTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHHHH---------CCCceeCCC
Confidence 37999999999998876665 34 2 565542 11111123444 222333221 16655 455
Q ss_pred eHHHHHHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccC
Q 011214 327 LIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTN 405 (491)
Q Consensus 327 lVDa~a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iAN 405 (491)
--|.+-.+-.+ +.| ++||.+.+ .+---+=-+++--+.|+.-.--..---|-||||-| ||||| +||
T Consensus 249 paDt~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkG-~A~ 314 (334)
T 3lxy_A 249 PADTLFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALE-----LAATG-TAD 314 (334)
T ss_dssp CHHHHTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGG-----GTTTT-CSC
T ss_pred ChHHhcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEecCCCeeeecCCCCcchh-----hccCC-CCC
Confidence 67887666555 688 77776654 21111112334455564411000112589999999 99999 999
Q ss_pred chhHHHHHHHHHH
Q 011214 406 SIASIFAWTRGLE 418 (491)
Q Consensus 406 PiA~IlS~ammL~ 418 (491)
|.+++-|.-++.+
T Consensus 315 ~~S~~~Ai~~A~~ 327 (334)
T 3lxy_A 315 VGSFITALNLAIK 327 (334)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999988655543
No 33
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=87.07 E-value=0.33 Score=49.50 Aligned_cols=140 Identities=12% Similarity=0.014 Sum_probs=78.5
Q ss_pred eeCHHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchHHH-HHHHHHH--HhhhccccccCCeEE-eeEeHHHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFK-DIFQQVY--EERWRQKFEEHSIWY-EHRLIDDMVA 333 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r~--~kVt~v~KaNIlk~tdglfr-~i~~eVa--~~eYp~~f~~~~I~~-e~~lVDa~a~ 333 (491)
.+|.+.+.+.++...++-++-+ ++-..|-==|==.--+|+|= |--+.+. =++.. +.||.+ --.=-|.+-.
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r----~~Gi~~~GP~paDT~F~ 256 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDAR----AKGMDVYGPCPPDTVFL 256 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHHH----TTTCEEEEEECHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHH----HCCCceeCCCCchhhcc
Confidence 4899999999999998333234 34344433443222245552 2111111 01121 127776 4555688766
Q ss_pred HHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcceeeeccccccccchhhccCCCCCccCchhHHHH
Q 011214 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (491)
Q Consensus 334 ~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~~fEp~HGSAPd~~~~~iaGk~~iANPiA~IlS 412 (491)
+-.+ ++| ++|| ||=| .+---+=-+|+--+.|+.-.--..---|-||||-| ||||| +|||.+++-|
T Consensus 257 ~~~~--~~~D~vla--MYHD----QGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkG-~A~~~Sl~~A 322 (330)
T 2hi1_A 257 QAYE--GQYDMVVA--MYHD----QGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTG-KAKSESMAVS 322 (330)
T ss_dssp HHHT--TSCSEEEE--SSHH----HHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTT-----TTTTT-CCCCHHHHHH
T ss_pred cccc--ccCCEEEE--cccc----cccHhHhhcccCcceEEecCCCEEEecCCCCcccc-----ccCCC-CCChHHHHHH
Confidence 6544 578 4444 3433 43333333455566675421101122589999999 99999 9999999988
Q ss_pred HHHHH
Q 011214 413 WTRGL 417 (491)
Q Consensus 413 ~ammL 417 (491)
.-++.
T Consensus 323 i~~A~ 327 (330)
T 2hi1_A 323 IKLAM 327 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 34
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=86.49 E-value=0.35 Score=49.38 Aligned_cols=134 Identities=13% Similarity=-0.023 Sum_probs=67.9
Q ss_pred eeCHHHHHHHHHHHHHHHHhCC--C-CEEEEeCCccccccchHH-HHH---HHHHHHhhhccccccCCeEEe-eEeHHHH
Q 011214 260 YNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDI---FQQVYEERWRQKFEEHSIWYE-HRLIDDM 331 (491)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r~--~-kVt~v~KaNIlk~tdglf-r~i---~~eVa~~eYp~~f~~~~I~~e-~~lVDa~ 331 (491)
.+|.+.+.+.++...+.-++-+ + |+-+ -==|==.--+|+| +|- ..=+- ++.. +.|+.+. -.=-|.+
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV-~GLNPHaGE~G~~G~EE~~iI~Pai-~~l~----~~gi~v~GP~paDt~ 269 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGL-MGINPHAGEGGLFGRDDIDITEPVA-RKLR----DDGMTVIGPQGADLL 269 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEE-ECSSGGGGTTTTTCSHHHHTHHHHH-HHHH----HC-CCEEEEECHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEE-EecCCCCCccccccchHHHHHHHHH-HHHH----HCCCeEeCCCchhhh
Confidence 4788888888877766555544 3 3332 2223222224554 111 11111 1111 1155443 3445655
Q ss_pred HHHHHhCCCCe-eeeccCCccchhhhhhhhhcCCcccccccccCCCCcce-eeeccccccccchhhccCCCCCccCchhH
Q 011214 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (491)
Q Consensus 332 a~~LVk~P~~F-VIvt~NlfGDILSDlaA~l~GslGlapSanig~d~~~~-~fEp~HGSAPd~~~~~iaGk~~iANPiA~ 409 (491)
- .+.+| ++|+ ||=| .+---+=-+++--+.|+.-. -++ ---|.||||-| ||||| +|||.++
T Consensus 270 F-----~~~~~D~vla--MYHD----Qgl~p~K~l~f~~~vnitlG-Lp~iRtS~dHGta~d-----iagkg-~a~~~s~ 331 (349)
T 4aty_A 270 L-----TNPDIDVFVA--MYHD----QGHIPVKLRAGRHSAALSIG-AGVLFSSVGHGSGFD-----IAGTL-LADPAPL 331 (349)
T ss_dssp T-----TCTTCSEEEE--SSHH----HHHHHHHHHHTTSEEEEEES-SSSEEEECCSCCCTT-----STTTT-CCCCHHH
T ss_pred h-----ccCCCCEEEE--cccc----cchHHHHhcccCCcEEEecC-CCeeEeCCCCChhhh-----hccCC-CCChHHH
Confidence 3 23578 6655 4544 22111112233334554311 111 12589999999 99999 9999999
Q ss_pred HHHHHHHH
Q 011214 410 IFAWTRGL 417 (491)
Q Consensus 410 IlS~ammL 417 (491)
+-|.-++.
T Consensus 332 ~~Ai~~a~ 339 (349)
T 4aty_A 332 LGAIRLVT 339 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98755544
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=79.60 E-value=0.98 Score=46.62 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=27.5
Q ss_pred eccccccccchhhccCCCCCccCchhHHHHHHHHHHh
Q 011214 383 EAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEH 419 (491)
Q Consensus 383 Ep~HGSAPd~~~~~iaGk~~iANPiA~IlS~ammL~h 419 (491)
-|-||||-| |||||.+|||.+++-|.-++.+.
T Consensus 332 SvDHGTAfD-----IAGkG~~Ad~~Sl~~Ai~~A~~~ 363 (367)
T 3tsn_A 332 SVDHGTAFD-----KAYKNAKINTKSYFEAAKFAINL 363 (367)
T ss_dssp ECCCCSCTT-----SCSSCCCCCCHHHHHHHHHHHHS
T ss_pred cCCCCcchh-----hcCCCCcCChHHHHHHHHHHHHh
Confidence 489999999 99999899999999886665543
No 36
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=71.12 E-value=4.8 Score=43.86 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=79.3
Q ss_pred EEecccCCccccccee-EcCCCceeeEecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEE
Q 011214 208 IGRHAFGDQYRATDTV-IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL 286 (491)
Q Consensus 208 IvREntEg~Y~g~e~~-~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~ 286 (491)
|--...+|+|.+.--. +...++..+.|...+|....-.+.-....++|.++.+++.+....|.+...+-|++.+--..+
T Consensus 173 Va~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSl 252 (741)
T 1itw_A 173 VAHMDNGDFYGSEKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGVLLSV 252 (741)
T ss_dssp EECCSSSSHHHHCEEEECCSSEEEEEEEEETTSCEEEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eeeccCCCccCcceeEEecCCCeEEEEEEcCCCcEEEecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeeh
Confidence 3344456677544333 366677788888777742211111111246788889999999999999999999887753344
Q ss_pred EeCCccccccchHH----HHH-HHHHHHhhhccccccCCeEEeeEeH
Q 011214 287 STKNTILKKYDGRF----KDI-FQQVYEERWRQKFEEHSIWYEHRLI 328 (491)
Q Consensus 287 v~KaNIlk~tdglf----r~i-~~eVa~~eYp~~f~~~~I~~e~~lV 328 (491)
=-|++-||.+|-.. -++ |.+|+ ++|.+.|++.||..+.=+-
T Consensus 253 HlKATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlg 298 (741)
T 1itw_A 253 HLKATMMKVSDPIMFGQIVSEFYKDAL-TKHAEVLKQIGFDVNNGIG 298 (741)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHH-HHTHHHHHHTTCCGGGCHH
T ss_pred hhhhccccccCcccccchhhhhhHHHH-HHHHHHHHHcCCCcccCHH
Confidence 44999999999653 333 66777 4788888888886654443
No 37
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=69.97 E-value=4.8 Score=43.80 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=77.5
Q ss_pred EEecccCCccccccee-EcCCCceeeEecCCCCCCCceeccccccCCceEEEEeeCHHHHHHHHHHHHHHHHhCCCCEEE
Q 011214 208 IGRHAFGDQYRATDTV-IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL 286 (491)
Q Consensus 208 IvREntEg~Y~g~e~~-~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~r~~kVt~ 286 (491)
|--...+|+|.+.--. +...++..+.|...+|....-.+.-....++|.++.+++.+....|.+...+-|++.+--..+
T Consensus 171 Va~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSl 250 (738)
T 2b0t_A 171 VATMDANDFRHNEKSIILDAADEVQIKHIAADGTETILKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGILFSA 250 (738)
T ss_dssp EECCSSSSHHHHCEEEECSSCEEEEEEEECSSCCEEEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eeeccCCCccCcceeEEecCCCeEEEEEEcCCCcEEEecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeeh
Confidence 3344456677554333 366777888888777742211111111246788889999999999999999999887753344
Q ss_pred EeCCccccccchHH----HHH-HHHHHHhhhccccccCCeEEeeE
Q 011214 287 STKNTILKKYDGRF----KDI-FQQVYEERWRQKFEEHSIWYEHR 326 (491)
Q Consensus 287 v~KaNIlk~tdglf----r~i-~~eVa~~eYp~~f~~~~I~~e~~ 326 (491)
=-|++-||.+|-.. -++ |.+|+ ++|.+.|++.||..+.=
T Consensus 251 HlKATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnG 294 (738)
T 2b0t_A 251 HLKATMMKVSDPIIFGHVVRAYFADVF-AQYGEQLLAAGLNGENG 294 (738)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHH-HHHHHHHHHTTCSSTTH
T ss_pred hhhhccccccCcccccchhhhhhHHHH-HHHHHHHHHcCCCcccC
Confidence 44999999999653 233 56676 37777787778765443
No 38
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=46.40 E-value=3.5 Score=43.29 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=15.1
Q ss_pred CCCeEEEecccCCccc
Q 011214 203 KKPICIGRHAFGDQYR 218 (491)
Q Consensus 203 ~~divIvREntEg~Y~ 218 (491)
.+|+||+||||||+|.
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 4899999999999998
No 39
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=41.41 E-value=71 Score=29.26 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=50.9
Q ss_pred ecccEEEEcCC----ccHHHHHHHHHHHHhcCCCceeEEEEecch-hhhhh-cCCCCcHH---HHHHHHhcCeEEEcccc
Q 011214 84 VQNPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI-LNRDA-TDDKVTVE---SAEATLKYNVAIKCATI 154 (491)
Q Consensus 84 ~~~~I~vi~GD----gIGpeI~~~~~~~l~~~~~~i~~~~~dlG~-~~~~~-tg~~lp~e---tl~aik~~da~LkGav~ 154 (491)
|.++|++|-|- -.++.+.+.+.+.+ ..+ ++++.+|+.. ..++. .....|++ ..+.++++|++++ .
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~-~~~--~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii---~ 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA-EGR--LEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLA---I 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH-TTT--EEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEE---E
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc-cCC--CEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEE---e
Confidence 55788888884 67777877766543 334 4555555542 11111 11124554 3467888999997 4
Q ss_pred CCCccchhhhccccCCCCccHHHHhhcCce
Q 011214 155 TPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 155 tP~~~~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
||.+. .|.-..|.+-||..
T Consensus 75 tPeYn-----------~s~pg~LKn~iDwl 93 (190)
T 3u7r_A 75 TPEYN-----------RSYPGMIKNAIDWA 93 (190)
T ss_dssp CCCBT-----------TBCCHHHHHHHHHH
T ss_pred chhhc-----------ccCCHHHHHHHHHh
Confidence 67654 24557899999964
No 40
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=32.83 E-value=1.3e+02 Score=27.30 Aligned_cols=85 Identities=16% Similarity=0.070 Sum_probs=53.3
Q ss_pred ccEEEEcCC----ccHHHHHHHHHH----HHhcCCCceeEEEEecchhhh---hhc-CCCCcH---HHHHHHHhcCeEEE
Q 011214 86 NPIVEMDGD----EMTRIIWQMIKD----KLIFPYLDLDIKYYDLGILNR---DAT-DDKVTV---ESAEATLKYNVAIK 150 (491)
Q Consensus 86 ~~I~vi~GD----gIGpeI~~~~~~----~l~~~~~~i~~~~~dlG~~~~---~~t-g~~lp~---etl~aik~~da~Lk 150 (491)
.+|++|-|- +.+..+.+++.+ .+.+.+..++.+.+|++.... +.. ....++ +..+.++++|++++
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 467777664 788888887776 554444456677777764332 111 111223 56778889999998
Q ss_pred ccccCCCccchhhhccccCCCCccHHHHhhcCce
Q 011214 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 151 Gav~tP~~~~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
|. |.+ |.++-..|..-+|..
T Consensus 92 ~s---P~Y-----------~~~~~~~lK~~iD~~ 111 (191)
T 3k1y_A 92 AT---PVF-----------KASYTGLFKMFFDIL 111 (191)
T ss_dssp EE---ECB-----------TTBSCHHHHHHHHHS
T ss_pred Ec---Ccc-----------CCcCcHHHHHHHHHh
Confidence 54 554 334557788888754
No 41
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=25.51 E-value=38 Score=34.29 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=16.4
Q ss_pred ecccEEEEcCC--ccHHHHHHHH
Q 011214 84 VQNPIVEMDGD--EMTRIIWQMI 104 (491)
Q Consensus 84 ~~~~I~vi~GD--gIGpeI~~~~ 104 (491)
|+..|++-.|| ||||||+-.+
T Consensus 1 m~~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 1 MSLRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCCCEEEECCSTTSSHHHHHHHH
T ss_pred CCCEEEEcCCCCcchhHHHHHHH
Confidence 44458999999 9999986533
No 42
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=24.96 E-value=1.4e+02 Score=28.33 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=53.0
Q ss_pred ccEEEEcCC----ccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCc---HHHHHHHHhcCeEEEccccCCCc
Q 011214 86 NPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVT---VESAEATLKYNVAIKCATITPDE 158 (491)
Q Consensus 86 ~~I~vi~GD----gIGpeI~~~~~~~l~~~~~~i~~~~~dlG~~~~~~tg~~lp---~etl~aik~~da~LkGav~tP~~ 158 (491)
.+|++|-|- +.+..+.+++.+.+...+++ ++.+++............+ .+..+.++++|+++++ +|.+
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~e--ve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~---sP~Y 109 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAE--VKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV---SPER 109 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCE--EEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE---EECS
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCE--EEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE---eCCC
Confidence 468888775 88889999888877666654 4555554311111111133 3456788899999985 4654
Q ss_pred cchhhhccccCCCCccHHHHhhcCce
Q 011214 159 TRMKEFGLKSMWRSPNGTIRNILNGT 184 (491)
Q Consensus 159 ~~~~e~~l~~~~~Spn~~LR~~LdLy 184 (491)
|.+.-..|.+-||..
T Consensus 110 -----------n~sipa~LKn~iD~l 124 (247)
T 2q62_A 110 -----------HGAMTGIMKAQIDWI 124 (247)
T ss_dssp -----------SSSCCHHHHHHHHTS
T ss_pred -----------CCCccHHHHHHHHHh
Confidence 345557888888865
No 43
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=24.74 E-value=36 Score=34.53 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=14.8
Q ss_pred ccEEEEcCC--ccHHHHHH
Q 011214 86 NPIVEMDGD--EMTRIIWQ 102 (491)
Q Consensus 86 ~~I~vi~GD--gIGpeI~~ 102 (491)
.+|++-.|| ||||||+-
T Consensus 9 ~~iaiT~GDpaGIGpEiil 27 (334)
T 3lxy_A 9 NRLVITPGEPAGVGPDLAI 27 (334)
T ss_dssp SEEEEECCCTTSSHHHHHH
T ss_pred CEEEEeCCCCccchHHHHH
Confidence 578999999 99999854
No 44
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=22.19 E-value=51 Score=33.38 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.6
Q ss_pred ccEEEEcCC--ccHHHHHHHH
Q 011214 86 NPIVEMDGD--EMTRIIWQMI 104 (491)
Q Consensus 86 ~~I~vi~GD--gIGpeI~~~~ 104 (491)
+||++-.|| ||||||+-.+
T Consensus 7 ~~iaIT~GDpaGIGpEii~ka 27 (330)
T 2hi1_A 7 KTVAITMGDPAGIGPEIIVKA 27 (330)
T ss_dssp CCEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEcCCCCcchhHHHHHHH
Confidence 349999999 9999996544
Done!