BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011215
(491 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39
PE=2 SV=2
Length = 564
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/466 (45%), Positives = 283/466 (60%), Gaps = 57/466 (12%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 73 REREADEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 128
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 188
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 189 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 248
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 249 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 308
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 309 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLPHPDLPAEE 368
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQVPLFNIL KF+
Sbjct: 369 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 422
Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
G T E + + + R+++T+LP Y+I ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 423 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 481
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
Y+ ++ + YDLIANIVHDGKP G YR+ V W
Sbjct: 482 YLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKW 525
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39
PE=1 SV=2
Length = 565
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/466 (45%), Positives = 283/466 (60%), Gaps = 57/466 (12%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 74 REREVDEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 129
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 130 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 190 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 249
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 250 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 309
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 310 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEE 369
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQVPLFNIL KF+
Sbjct: 370 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 423
Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
G T E + + + R+++T+LP Y+I ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 424 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 482
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
Y+ ++ + YDLIANIVHDGKP G YR+ V W
Sbjct: 483 YLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKW 526
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39
PE=2 SV=1
Length = 565
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/466 (45%), Positives = 282/466 (60%), Gaps = 57/466 (12%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+S S
Sbjct: 74 REREVDEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISPS 129
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 130 HVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 190 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 249
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 250 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 309
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 310 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEE 369
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQVPLFNIL KF+
Sbjct: 370 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 423
Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
G T E + + + R+++T+LP Y+I ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 424 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 482
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
Y+ +E + YDLIANIVHDGKP G YR+ V W
Sbjct: 483 YLSEEVQAVHEN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKW 526
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1
Length = 502
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 173/426 (40%), Positives = 245/426 (57%), Gaps = 54/426 (12%)
Query: 107 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYIN 166
YLDT+NR++LDFDFEK CSVSL+NL+VYACLVCG+Y+QGRG SHAY H+L HHV++N
Sbjct: 60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVN 119
Query: 167 LRTEKVYCLPDGYEINDPSLEDIRHV---------------------------------G 193
T K Y LP+ Y++ +L+DI +V G
Sbjct: 120 CSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVG 179
Query: 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQ 253
+NNIK D+ NV I L V P RN+FL+ +N+ +C LV R L RK+W+ + FK
Sbjct: 180 MNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSH 237
Query: 254 VSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----KNTSIIYECFQ 309
VSP E +Q V S K++ I Q +PVEF+SW LNTLH+ L K K TSI++ FQ
Sbjct: 238 VSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQ 297
Query: 310 GELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369
G + + + + Q+ EKG D + +T+ +PFL L LDLPP P+F+D
Sbjct: 298 GFVRIESQKIR-------QHAEKGEQVVFTGDRVI-QTNVVPFLYLTLDLPPKPIFQDEF 349
Query: 370 EKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEK 429
E NIIPQV L IL K++G E+ R R+ + P Y I H++RF KNN+F E+
Sbjct: 350 EGNIIPQVELKEILNKYNGVHTQELAG---MRRRFHLMTAPPYFIFHIKRFMKNNYFTER 406
Query: 430 NPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD----GKPEGGFYRVFVQR 485
N T+V FP+ + ++ +I + N K+ +KY+L+ANI+H+ + E +R+ ++
Sbjct: 407 NQTIVTFPLDDFDMSPFIDDSFIQSNPKISTKYNLVANIIHESVTHAEEEFHNFRIQIRN 466
Query: 486 KSEELW 491
S W
Sbjct: 467 PSTNKW 472
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1
Length = 448
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 184/401 (45%), Gaps = 83/401 (20%)
Query: 107 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYIN 166
YL+TV R+ LDFD EK C ++LS LNVY CLVCG YYQGR +KS A+ HS++ HHV++N
Sbjct: 31 YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLN 90
Query: 167 LRTEKVYCLPDGYEI--------------------NDPSLEDI--------------RHV 192
L + K Y LP +I LED +
Sbjct: 91 LTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCFDLSNRTYLNGFI 150
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKG 252
G N D+ + + + + P+R+ FL+ N+ + + R +KIW + FK
Sbjct: 151 GFTNAATYDYAHSVLLLISHMVPVRDHFLL--NHFDNQGEFIKRLSICVKKIWSPKLFKH 208
Query: 253 QVSPHEFLQAVMKASKKRFRIGVQSNPVE---FMSWLLNTLHSDLRNTKKNTSIIYECFQ 309
+S +F+ S + R G+ NP++ F+ WL N + S + K SI+ +
Sbjct: 209 HLSVDDFV------SYLKVREGLNLNPIDPRLFLLWLFNKICSSSNDLK---SILNHSCK 259
Query: 310 GELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369
G++++ K +N + S+ +T + PF +L LDLP F+D
Sbjct: 260 GKVKIAKV----------ENKPEASES------VTGKVIVKPFWVLTLDLPEFSPFEDGN 303
Query: 370 EKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEK 429
+ +PQ+ + +L KF + + +TRLP+++I H RF +N+
Sbjct: 304 SVDDLPQINITKLLTKFTKSRSSS------TSTVFELTRLPQFLIFHFNRFDRNS----- 352
Query: 430 NPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVH 470
+ PVKN ++ + E E L KY L AN+VH
Sbjct: 353 -----DHPVKN---RNQTLVEFSSELEILHVKYRLKANVVH 385
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 175/493 (35%), Gaps = 131/493 (26%)
Query: 104 DCPYLDTVNRQVLDFDFEKF---------CSVSLSNLNVYACLVCGKYYQGRGQKSHAYT 154
+CP+L + + D KF CSV SN + + CL C + GR HA
Sbjct: 2 ECPHLSS--SVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKK 59
Query: 155 H----------------SLEAGHHVYINLRTEKVYCL-PDGYEINDPSLEDIRHV----- 192
H +A H V ++ + YC D + +ND L ++ V
Sbjct: 60 HYEDAQIPLLNHKRSEKQEKAQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQ 119
Query: 193 ----------------------------------------GLNNIKETDFVNVTIQSLMR 212
GL N+ T F+N +QSL
Sbjct: 120 NLENSAFTADRHRKRKLLENSSLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSN 179
Query: 213 V------------TPLRNFFLIPENYRHCKS------PLVHRFGDLTRKIWHARNFKGQV 254
+ LRN H +S LV F +W +
Sbjct: 180 IEQFCCYFKELPAVELRNGKTAGRRTYHTRSQGDSNVSLVEEFRKTLCALWQGS--QTAF 237
Query: 255 SPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR---NTKKNTSIIYE----- 306
SP V K FR Q + EFM +LL+ LH +L+ N ++I+ E
Sbjct: 238 SPESLFYVVWKI-MPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLS 296
Query: 307 -----CFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-PFLMLGLDLP 360
C G VV I G QN G TE+ + PFL L LD+P
Sbjct: 297 ASNKCCINGASTVVTAI----FGGILQNEVNCLICG-------TESRKFDPFLDLSLDIP 345
Query: 361 PPPLFKDVMEKNIIPQVPLFNILKKF-DGETV--TEVVRPHVARMR------YRVTRLPK 411
K + P L + L+ F D E + TE+ H + + + + +LPK
Sbjct: 346 SQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPK 405
Query: 412 YMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD 471
+ LH++RF + K T V FP++ L++K Y L P+ + YDL A +VH
Sbjct: 406 ALCLHLKRFHWTAYLRNKVDTYVQFPLRGLDMKCY--LLEPENSGPDSCLYDLAAVVVHH 463
Query: 472 GKPEG-GFYRVFV 483
G G G Y +
Sbjct: 464 GSGVGSGHYTAYA 476
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 165/464 (35%), Gaps = 120/464 (25%)
Query: 124 CSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAG----------------HHVYINL 167
CSV SN + + CL C + GR HA H +A H V ++
Sbjct: 29 CSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDC 88
Query: 168 RTEKVYCL-PDGYEINDPSLEDIRHV---------------------------------- 192
+ YC D + +ND L ++ V
Sbjct: 89 SSYSTYCYRCDDFVVNDTKLGLVQKVREHLQNLENSAFTADRHKKRKLLENSTLNSKLLK 148
Query: 193 -----------GLNNIKETDFVNVTIQSLMRV------------TPLRNFFLIPENYRHC 229
GL N+ T F+N +QSL + LRN H
Sbjct: 149 VNGSTTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKTAGRRTYHT 208
Query: 230 KS------PLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFM 283
+S LV F +W + SP V K FR Q + EFM
Sbjct: 209 RSQGDNNVSLVEEFRKTLCALWQGS--QTAFSPESLFYVVWKI-MPNFRGYQQQDAHEFM 265
Query: 284 SWLLNTLHSDLR---NTKKNTSIIYE----------CFQGELEVVKEIPKNTISGNDQNT 330
+LL+ LH +L+ N ++I+ E C G VV I G QN
Sbjct: 266 RYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAI----FGGILQNE 321
Query: 331 EKGSDGGDDHDNITTETSRM-PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKF-DG 388
G TE+ + PFL L LD+P K + P L + L+ F D
Sbjct: 322 VNCLICG-------TESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSFTDL 374
Query: 389 ETV--TEVVRPHVARMR------YRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKN 440
E + TE+ H + + + + +LPK + LH++RF + K T V FP++
Sbjct: 375 EELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRG 434
Query: 441 LELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEG-GFYRVFV 483
L++K Y L P+ + YDL A +VH G G G Y +
Sbjct: 435 LDMKCY--LLEPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYA 476
>sp|Q9SUX7|FB245_ARATH Putative F-box protein At4g22420 OS=Arabidopsis thaliana
GN=At4g22420 PE=4 SV=1
Length = 184
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 21 KVVEQSSPSPPRLGFENPLLPLANTYDD-----DDEEEEYGGRGDSGAKVGQNGR--TGE 73
+V+E+S PP LGF N LLPLAN YDD +E ++ R + AK NG GE
Sbjct: 41 RVIERSDSPPPPLGFNNHLLPLANAYDDDDEEEGNELKKSQARRNGVAKGEGNGNKVNGE 100
Query: 74 DDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNL 131
+E DE++DD G+G+ SR VEVRRDCPYLDTVNRQV+ D V L+ +
Sbjct: 101 AQEEVDDEEDDDDDASKGRGKHSRHVEVRRDCPYLDTVNRQVIIIDQFLMLRVPLATM 158
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 44/324 (13%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR------HCKSPLVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L + R ++ L+ F L + +W
Sbjct: 19 TGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLNNNSRMRTALMSEFAKLIQLLW 78
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ VSP EF + + + RF Q + EF+ +LL+ LH ++ N ++
Sbjct: 79 TSSP-NDSVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHGEV-----NRVLVR 131
Query: 306 ECFQGELEVVKEIPKNTISGN------DQNTEKGSD--GGDDHDNITTE------TSRMP 351
+ + + +P + S ++ + SD G ++T T+ P
Sbjct: 132 P--RANADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDP 189
Query: 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMR----YRVT 407
F L L +P K E ++ + LF DG+ R AR R + +
Sbjct: 190 FWDLSLPIPK----KGYGEVTLMDCLRLFTKEDVLDGDEKPTCCRCK-ARTRCTKKFSIQ 244
Query: 408 RLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIAN 467
+ PK ++LH++RF++ K T VNFP+K+L+L+++ + N + Y+L A
Sbjct: 245 KFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLREF---ASQSCNHAV---YNLYAV 298
Query: 468 IVHDGKPEGGFYRVFVQRKSEELW 491
H G GG Y + + W
Sbjct: 299 SNHSGTTMGGHYTAYCKSPISSEW 322
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 40/322 (12%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR------HCKSPLVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R + + LV F L + IW
Sbjct: 267 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 326
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-------RNTK 298
+ + VSP EF + + + RF Q + EF+ +LL+ LH+++ ++
Sbjct: 327 TS-SPNDVVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 384
Query: 299 KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLD 358
+N + + +G K + + D + D T PF L L
Sbjct: 385 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLP 444
Query: 359 LPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TVTEVVRPHVARMRYRVTRL 409
+ K P+V L + ++ F E T ++ + R
Sbjct: 445 I----------AKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRF 494
Query: 410 PKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIV 469
PK ++LH++RF+++ K T VNFP+++L+L+++ EN + Y+L A
Sbjct: 495 PKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-----SENTN-HAVYNLYAVSN 548
Query: 470 HDGKPEGGFYRVFVQRKSEELW 491
H G GG Y + + W
Sbjct: 549 HSGTTMGGHYTAYCRSPGTGEW 570
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 132/338 (39%), Gaps = 72/338 (21%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSP---LVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R H S L+ F L + IW
Sbjct: 275 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEFAKLIQTIW 334
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ + VSP EF + + + RF Q + EF+ +LL+ LH+++
Sbjct: 335 TS-SPNDVVSPSEFKTQIQRYAP-RFMGYNQQDAQEFLRFLLDGLHNEVNRVAARP---- 388
Query: 306 ECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLG--------- 356
+ E + +P + EKG + + E SR+ L +G
Sbjct: 389 ---KASPETLDHLP---------DEEKGRQMWRKY--LEREDSRIGDLFVGQLKSSLTCT 434
Query: 357 --------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TVTE 393
L LP + K P+V L + ++ F E T
Sbjct: 435 DCGYCSTVFDPFWDLSLP--------IAKRGYPEVTLMDCMRLFTKEDILDGDEKPTCCR 486
Query: 394 VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK 453
++ V R PK ++LH++RF+++ K T VNFP+++L+L+++
Sbjct: 487 CRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-----S 541
Query: 454 ENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
EN + Y+L A H G GG Y + + W
Sbjct: 542 ENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEW 578
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 132/340 (38%), Gaps = 76/340 (22%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSP---LVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R H S L+ F L + IW
Sbjct: 280 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEFAKLIQTIW 339
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ + VSP EF + + + RF Q + EF+ +LL+ LH+
Sbjct: 340 TS-SPNDVVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHN------------- 384
Query: 306 ECFQGELEVVKEIPKNTISGNDQ--NTEKGSDGGDDHDNITTETSRMPFLMLG------- 356
E+ V PK + D + EKG + + E SR+ L +G
Sbjct: 385 -----EVNRVAARPKPSPESLDHLPDEEKGRQMWRKY--LEREDSRIGDLFVGQLKSSLT 437
Query: 357 ----------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TV 391
L LP + K P+V L + ++ F E T
Sbjct: 438 CTDCGYCSTVFDPFWDLSLP--------IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTC 489
Query: 392 TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPT 451
++ V R PK ++LH++RF+++ K T VNFP+++L+L+++
Sbjct: 490 CRCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA---- 545
Query: 452 PKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
EN + Y+L A H G GG Y + + W
Sbjct: 546 -SENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEW 583
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 131/328 (39%), Gaps = 52/328 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR------HCKSPLVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R + L+ F L + IW
Sbjct: 268 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSSRAHTALMEEFAKLIQTIW 327
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT----KKNT 301
+ + VSP EF + + + RF Q + EF+ +LL+ LH+++ K NT
Sbjct: 328 TS-SPNDVVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHNEVNRVIARPKSNT 385
Query: 302 SII---------YECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPF 352
+ + ++ LE + G +++ +D G T PF
Sbjct: 386 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG------YCSTVFDPF 439
Query: 353 LMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TVTEVVRPHVARMR 403
L L + K P+V L + ++ F E T +
Sbjct: 440 WDLSLPI----------TKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKK 489
Query: 404 YRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYD 463
+ + R PK ++LH++RF+++ K VNFP+++L+L+++ EN + Y+
Sbjct: 490 FSIQRFPKILVLHLKRFSESRIRTSKLTAFVNFPLRDLDLREFA-----SENTN-HAVYN 543
Query: 464 LIANIVHDGKPEGGFYRVFVQRKSEELW 491
L A H G GG Y + + W
Sbjct: 544 LYAVSNHSGTTMGGHYTAYCRSPVTGEW 571
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 131/331 (39%), Gaps = 72/331 (21%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPENYRHCKSPLVHRFGDLTRKIWHA 247
GL N+ T ++N +Q L V+PL +FL I + C S + F L +W
Sbjct: 45 TGLRNLGNTCYMNAILQCLCSVSPLVEYFLSGKYITALKKDC-SEVTTAFAYLMTDMWLG 103
Query: 248 RNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR-------NTKKN 300
+ VSP FL AV + F Q + EF+ ++LN LH L+ N K+
Sbjct: 104 DS--DCVSPEIFLSAV-GSLYPAFLKKTQQDAQEFLIYVLNELHEALKKHCRRRVNEKRT 160
Query: 301 ------------TSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348
TSII F+G+L T + T K
Sbjct: 161 GQSCCRKVPAQETSIITRLFEGQLSY-----SITCLKCESCTHKNE-------------- 201
Query: 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHV--------A 400
F +L L +P E ++ + F F +T+T + + A
Sbjct: 202 --VFTILSLPIPSD------YECSLQDCLQCF-----FQQDTLTWSNQIYCSFCEIKQEA 248
Query: 401 RMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRS 460
+R ++++PK ++ H +RF K T +++P+ NL+L YI P +++
Sbjct: 249 AVRTTISKVPKIIVFHFKRFDIQGTVKRKLRTDIHYPLTNLDLTPYI-CPVFRKHP---- 303
Query: 461 KYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
Y+L A + H G +GG Y F + + W
Sbjct: 304 MYNLCAVVNHFGDLDGGHYTAFCKNSVTQAW 334
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 67/262 (25%)
Query: 97 RLVEVRRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQ 148
++ R CP+LD+V + +K C V NL +ACL C G Q
Sbjct: 31 KMSAFRNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNL--WACLENRCSYVGCGESQ 88
Query: 149 KSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH---------- 191
H+ HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 89 VDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQ 148
Query: 192 ------------------------------------VGLNNIKETDFVNVTIQSLMRVTP 215
GL NI T ++N +Q+L P
Sbjct: 149 DFKIPSNTTLKTPLVAVFDDLDIEADEEDELRARGLTGLKNIGNTCYMNAALQALSNCPP 208
Query: 216 LRNFFLIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273
L FFL R K P + + + L ++WH ++ G V P Q + K FR
Sbjct: 209 LTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRG 266
Query: 274 GVQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 267 YSQQDAQEFLRCLMDLLHEELK 288
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 604 KVQNFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQ----IVTYDL 659
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + + LW
Sbjct: 660 LSVICHHGTASSGHYIAYCRNNLNNLW 686
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 97/261 (37%), Gaps = 67/261 (25%)
Query: 98 LVEVRRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQK 149
+ R CP+LD+V + +K C V NL +ACL C G Q
Sbjct: 1 MTTFRNHCPHLDSVGEITKEDLIQKSLGACQDCKVRGPNL--WACLENRCSYVGCGESQV 58
Query: 150 SHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH----------- 191
H+ HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 59 DHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTPPSLPHVRQPQQTQENSVQD 118
Query: 192 -----------------------------------VGLNNIKETDFVNVTIQSLMRVTPL 216
GL NI T ++N +Q+L PL
Sbjct: 119 FKIPSNPALKTPMVAVSEDLDIEVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPL 178
Query: 217 RNFFLIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIG 274
FFL R K P + + + L ++WH ++ G V P Q + K FR
Sbjct: 179 TQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPANLFQGI-KTVNPTFRGY 236
Query: 275 VQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 237 SQQDAQEFLRCLMDLLHEELK 257
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 571 KVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQ----IVTYDL 626
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + + LW
Sbjct: 627 LSVICHHGTASSGHYIAYCRNNLNNLW 653
>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca
fascicularis GN=USP50 PE=2 SV=1
Length = 373
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 131/326 (40%), Gaps = 60/326 (18%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPENYRHCKSPLVHRFGDLTRKIWHA 247
GL N+ T ++N +Q L ++PL +FL I C S + F L +W
Sbjct: 44 TGLRNLGNTCYMNAILQCLCSISPLVEYFLSGKYITALQNDC-SEVATAFAYLMTDMWLG 102
Query: 248 RNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYEC 307
+ VSP E ++ + F Q + EF+ ++LN LH L+
Sbjct: 103 DS--DCVSP-EIFRSALGNLYPAFTKKTQQDAQEFLIYVLNELHEALKK----------- 148
Query: 308 FQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS--------RMPFLMLGLDL 359
P+ ++ EKGS ITTETS ++ + ++ L
Sbjct: 149 --------YHYPRR------RSHEKGSAQRCCRKWITTETSVITQLFEGQLNYSIVCLKC 194
Query: 360 PPPPLFKDVMEKNIIP-----QVPLFNILKKF-DGETVTEVVRPHVA--------RMRYR 405
+V +P + L + L+ F +T+T + H + +R
Sbjct: 195 EKCTYKNEVFTVLSLPIPSEYECSLQDCLQCFFQQDTLTWNNQIHCSFCETKQETAVRAG 254
Query: 406 VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLI 465
+++ PK +I H++RF K T +++P+ NL+L YI P ++ KY+L
Sbjct: 255 ISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLDLTPYI-CPIFRK----YPKYNLC 309
Query: 466 ANIVHDGKPEGGFYRVFVQRKSEELW 491
A + H G +GG Y F + + W
Sbjct: 310 AVVNHFGDLDGGHYTAFCKNSFTQAW 335
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 63/255 (24%)
Query: 102 RRDCPYLDTV---NRQVLDFDFEKFCS-VSLSNLNVYACLV--CGKYYQGRGQKSHAYTH 155
R CP+LD+V ++ L + C + N++ACL C G Q H+ H
Sbjct: 5 RNHCPHLDSVGEITKEDLIQKSQGTCQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIH 64
Query: 156 SLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH----------------- 191
S E H++ +NL T +V+C E+ PSL +R
Sbjct: 65 SQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIPSN 124
Query: 192 -----------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLI 222
GL NI T ++N +Q+L PL FFL
Sbjct: 125 TTLKTPLVAVFDDLDIEVDEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLD 184
Query: 223 PENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPV 280
R K P + + + L ++WH ++ G V P Q + K FR Q +
Sbjct: 185 CGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTNLFQGI-KTVNPTFRGYSQQDAQ 242
Query: 281 EFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 243 EFLRCLMDLLHEELK 257
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 572 KVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQ----IVTYDL 627
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + + LW
Sbjct: 628 LSVICHHGTASSGHYIAYCRNNLNNLW 654
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 67/257 (26%)
Query: 102 RRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQKSHAY 153
R CP+LD+V + +K C V NL +ACL C G Q H+
Sbjct: 5 RSHCPHLDSVGEITKEDLIQKSHGSCQDCKVRGPNL--WACLENRCSYVGCGESQVDHST 62
Query: 154 THSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRHV-------------- 192
HS E H++ +NL T +V+C E+ PSL ++ +
Sbjct: 63 IHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVKPLHQIQENGVQDFKIP 122
Query: 193 --------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFF 220
GL NI T ++N +Q+L PL FF
Sbjct: 123 SNTTLKTPLVAVFDDLDIEVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPLTQFF 182
Query: 221 LIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSN 278
L R K P + + + L ++WH ++ G V P Q + K FR Q +
Sbjct: 183 LDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRGYSQQD 240
Query: 279 PVEFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 241 AQEFLRCLMDLLHEELK 257
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 574 KVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPVQ----IVTYDL 629
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + + LW
Sbjct: 630 LSVICHHGTASSGHYIAYCRNNLNNLW 656
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 126/337 (37%), Gaps = 65/337 (19%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT------TETSRMPFLMLG 356
I+ +P G E+ DD N+ E S++ L +G
Sbjct: 327 IL---------ASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVG 377
Query: 357 -----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTE 393
L LP P + ++ LF ++ + E
Sbjct: 378 QLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPV 437
Query: 394 VVRPHVARMRYR------VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYI 447
R R + R V R P+ ++LH+ RF+ + ++K+ V+FP++ L L D+
Sbjct: 438 CDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDF- 493
Query: 448 PLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQ 484
++ Y L A H G G Y +
Sbjct: 494 -----ASDKAGSPVYQLYALCNHSGSVHYGHYTALCR 525
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 95/254 (37%), Gaps = 64/254 (25%)
Query: 104 DCPYLDTVNR----QVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSL 157
DCP+L+ V +++ + + N++ACL G Y G G+ H+ HS
Sbjct: 8 DCPHLECVGEITKEELIQKSHGQCQDCKVGGPNLWACLENGCSYVGCGESHADHSTVHSQ 67
Query: 158 EAGHHVYINLRTEKVYC------------------LPDGYEINDP--------------- 184
E H++ +NL T +V+C LP+ + P
Sbjct: 68 ETRHNLTVNLTTLRVWCYACTKEVFLERKLGPHKQLPNAAKAVSPVQTPCQDLNTPGSPT 127
Query: 185 --------SLEDIRH-------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP 223
+ +D+ GL NI T ++N +Q+L PL FFL
Sbjct: 128 SLRVPSAGTCDDLDMETEEEDELRTRGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLEC 187
Query: 224 ENYRHC--KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVE 281
K L + L +WH +N V P Q + KA FR Q + E
Sbjct: 188 GGLVKTDKKPALCKSYQKLITDLWH-KNRNAYVVPTNLFQGI-KAVNPMFRGYSQQDSQE 245
Query: 282 FMSWLLNTLHSDLR 295
F+ L++ LH +L+
Sbjct: 246 FLRCLMDQLHEELK 259
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V LP+ + +H++RF F K T V+FP++ LE++ ++ K++ L + YDL
Sbjct: 559 KVQSLPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLEMQPFL----AKDSSALTTTYDL 614
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + + + +LW
Sbjct: 615 LSVICHHGTASSGHYIAYCRNELNQLW 641
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 95/249 (38%), Gaps = 61/249 (24%)
Query: 104 DCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLVCGKYYQGRGQK--SHAYTH 155
DCP+L++V + +K C V NL +ACL G Y G G+ H+ H
Sbjct: 7 DCPHLESVGEVTKEELIKKSHGSCQDCRVRGPNL--WACLENGCSYVGCGESHVDHSTLH 64
Query: 156 SLEAGHHVYINLRTEKVYCL---------------PDGYEINDPSLEDIRH--------- 191
S + H + +NL T +V+C P ++ D ++ +
Sbjct: 65 SQDTKHCLTVNLTTLRVWCYTCSKEVFLDRKLSTQPTSAKLQDSHTQESKMSSSLTLKIP 124
Query: 192 -----------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH 228
GL NI T ++N +Q+L PL ++FL
Sbjct: 125 AAVVSENLDIELEEEDELKTRGLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLAR 184
Query: 229 C--KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWL 286
K L + L IWH +N G V P Q + K+ FR Q + EF+ L
Sbjct: 185 TDKKPALCKSYQKLMSDIWH-KNRPGFVIPTNLFQGI-KSVNPTFRGYSQQDAQEFLRCL 242
Query: 287 LNTLHSDLR 295
++ LH +L+
Sbjct: 243 MDVLHEELK 251
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 554 KVQKFPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLDLQPFLAKDSPSQ----IVTYDL 609
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + + LW
Sbjct: 610 LSVICHHGTASSGHYIAYCRNNLNNLW 636
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1
SV=1
Length = 1118
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 150/389 (38%), Gaps = 115/389 (29%)
Query: 168 RTEKVYCLPDGYEINDPSLEDIRHV------------GLNNIKETDFVNVTIQSLMRVTP 215
R K C P EI+ S IR++ GL N+ T ++N +Q L
Sbjct: 742 RENKPTCYPKA-EISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPH 800
Query: 216 LRNFFLIPENYRHC-------------KSPLVHRFGDLTRKIWHARNFKGQ---VSPHEF 259
L ++F R+C K + FG + + +W GQ +SP +F
Sbjct: 801 LADYF-----NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALW-----TGQYRYISPKDF 850
Query: 260 LQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL------------------------- 294
+ K + + F Q + E + +L++ LH DL
Sbjct: 851 KITIGKINDQ-FAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEH 909
Query: 295 ---RNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351
++ + N SII FQG+ K+T+ + SR
Sbjct: 910 AWQKHKQLNESIIVALFQGQF-------KSTVQCL----------------TCHKKSRTF 946
Query: 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE-TVTEVVRPHVARMRYR----- 405
+ L LP K ++ + L+ F E +T+ R + + R R
Sbjct: 947 EAFMYLSLPLASTSKCTLQ----------DCLRLFSKEEKLTDNNRFYCSHCRARRDSLK 996
Query: 406 ---VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKY 462
+ +LP +++H++RF+ + + +K T V+FP++NL+L Y+ PK N K KY
Sbjct: 997 KIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYV--IGPKNNLK---KY 1051
Query: 463 DLIANIVHDGKPEGGFYRVFVQRKSEELW 491
+L + H G +GG Y + + + + W
Sbjct: 1052 NLFSVSNHYGGLDGGHYTAYCKNAARQRW 1080
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 398 HVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEK 457
+A + + LP+ +I+H++RF+ F EK TLV FP+++L+ +++ P + N +
Sbjct: 809 QLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPE 868
Query: 458 LRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
L KYDLIA H G G Y F K W
Sbjct: 869 L-YKYDLIAVSNHYGGMRDGHYTTFACNKDSGQW 901
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPE-NYRH---CKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L V L +FL + E N+R+ K + + DL ++
Sbjct: 309 CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQ 368
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
W + + PH F V + + F Q + E +S+LL+ LH DL KK +
Sbjct: 369 AWSGHH--RSIVPHVFKNKVGHFASQ-FLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYV 425
Query: 304 IYECFQG--ELEVVKEIPKNTISGND-------QNTEKGSDGGDDHDNITTETSRMPFLM 354
G + EV +E +N ND K + D N++ PF
Sbjct: 426 ELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFD--PFCY 483
Query: 355 LGLDLPPPPLFKDVMEKNIIPQVP 378
L +P P K V+E IP P
Sbjct: 484 LS--VPLPISHKRVLEVFFIPMDP 505
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46
PE=2 SV=1
Length = 366
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 131/334 (39%), Gaps = 52/334 (15%)
Query: 176 PDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVH 235
P+ + IN+ + GL N T + N +Q+L P R L + + K L+
Sbjct: 25 PEQFPINE------HYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLT 78
Query: 236 RFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 295
DL I + G + P +F+ + K + F +Q + EF+++LLNT+ L+
Sbjct: 79 CLADLFHSIATQKKKVGVIPPKKFISRLRKEND-LFDNYMQQDAHEFLNYLLNTIADILQ 137
Query: 296 NTKK-----------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344
KK N + E + EL V EI + T++ + + D D
Sbjct: 138 EEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDED--- 194
Query: 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRY 404
FL L +D+ + +K+ ET A+ R
Sbjct: 195 -------FLDLSVDVEQNTSITHCLRD--FSNTETLCSEQKYYCETCCS---KQEAQKRM 242
Query: 405 RVTRLPKYMILHMRRFTKNNFFVE------KNPTLVNFPVKNLELKDYIPLPTPKENEKL 458
RV +LP + LH++RF ++E K V FP LEL+ + T + L
Sbjct: 243 RVKKLPMILALHLKRFK----YMEQLHRYTKLSYRVVFP---LELRLF---NTSSDAVNL 292
Query: 459 RSKYDLIANIVHDGK-PEGGFYRVFVQRKSEELW 491
YDL+A +VH G P G Y V KS W
Sbjct: 293 DRMYDLVAVVVHCGSGPNRGHYITIV--KSHGFW 324
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46
PE=1 SV=1
Length = 366
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 131/334 (39%), Gaps = 52/334 (15%)
Query: 176 PDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVH 235
P+ + IN+ + GL N T + N +Q+L P R L + + K L+
Sbjct: 25 PEQFPINE------HYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLT 78
Query: 236 RFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 295
DL I + G + P +F+ + K + F +Q + EF+++LLNT+ L+
Sbjct: 79 CLADLFHSIATQKKKVGVIPPKKFISRLRKEND-LFDNYMQQDAHEFLNYLLNTIADILQ 137
Query: 296 NTKK-----------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344
KK N + E + EL V EI + T++ + + D D
Sbjct: 138 EEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDED--- 194
Query: 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRY 404
FL L +D+ + +K+ ET A+ R
Sbjct: 195 -------FLDLSVDVEQNTSITHCLRD--FSNTETLCSEQKYYCETCCS---KQEAQKRM 242
Query: 405 RVTRLPKYMILHMRRFTKNNFFVE------KNPTLVNFPVKNLELKDYIPLPTPKENEKL 458
RV +LP + LH++RF ++E K V FP LEL+ + T + L
Sbjct: 243 RVKKLPMILALHLKRFK----YMEQLHRYTKLSYRVVFP---LELRLF---NTSSDAVNL 292
Query: 459 RSKYDLIANIVHDGK-PEGGFYRVFVQRKSEELW 491
YDL+A +VH G P G Y V KS W
Sbjct: 293 DRMYDLVAVVVHCGSGPNRGHYITIV--KSHGFW 324
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46
PE=1 SV=1
Length = 366
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 131/334 (39%), Gaps = 52/334 (15%)
Query: 176 PDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVH 235
P+ + IN+ + GL N T + N +Q+L P R L + + K L+
Sbjct: 25 PEQFPINE------HYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLT 78
Query: 236 RFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 295
DL I + G + P +F+ + K + F +Q + EF+++LLNT+ L+
Sbjct: 79 CLADLFHSIATQKKKVGVIPPKKFISRLRKEND-LFDNYMQQDAHEFLNYLLNTIADILQ 137
Query: 296 NTKK-----------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344
KK N + E + EL V EI + T++ + + D D
Sbjct: 138 EEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDED--- 194
Query: 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRY 404
FL L +D+ + +K+ ET A+ R
Sbjct: 195 -------FLDLSVDVEQNTSITHCLRD--FSNTETLCSEQKYYCETCCS---KQEAQKRM 242
Query: 405 RVTRLPKYMILHMRRFTKNNFFVE------KNPTLVNFPVKNLELKDYIPLPTPKENEKL 458
RV +LP + LH++RF ++E K V FP LEL+ + T + L
Sbjct: 243 RVKKLPMILALHLKRFK----YMEQLHRYTKLSYRVVFP---LELRLF---NTSSDAVNL 292
Query: 459 RSKYDLIANIVHDGK-PEGGFYRVFVQRKSEELW 491
YDL+A +VH G P G Y V KS W
Sbjct: 293 DRMYDLVAVVVHCGSGPNRGHYITIV--KSHGFW 324
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1
SV=2
Length = 1080
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 149/389 (38%), Gaps = 115/389 (29%)
Query: 168 RTEKVYCLPDGYEINDPSLEDIRHV------------GLNNIKETDFVNVTIQSLMRVTP 215
R K C P EI+ S IR++ GL N+ T ++N +Q L
Sbjct: 704 RENKPPCYPKA-EISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPH 762
Query: 216 LRNFFLIPENYRHC-------------KSPLVHRFGDLTRKIWHARNFKGQ---VSPHEF 259
L ++F R+C K + FG + + +W GQ +SP +F
Sbjct: 763 LADYF-----NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALW-----TGQYRYISPKDF 812
Query: 260 LQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL------------------------- 294
+ K + + F Q + E + +L++ LH DL
Sbjct: 813 KVTIGKINDQ-FAGSSQQDSQELLLFLMDGLHEDLNKADNRKRHKEENNEHLDDLQAAEH 871
Query: 295 ---RNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351
++ + N SII FQG+ K+T+ SR
Sbjct: 872 AWQKHKQLNESIIVALFQGQF-------KSTVQCL----------------TCRRRSRTF 908
Query: 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE-TVTEVVRPHVARMRYR----- 405
+ L LP K ++ + L+ F E +T+ R + + R R
Sbjct: 909 EAFMYLSLPLASTSKCTLQ----------DCLRLFSKEEKLTDNNRFYCSHCRARRDSLK 958
Query: 406 ---VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKY 462
+ +LP +++H++RF+ + + +K T V+FP++NL+L Y+ PK + K KY
Sbjct: 959 KIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYV--IGPKNSLK---KY 1013
Query: 463 DLIANIVHDGKPEGGFYRVFVQRKSEELW 491
+L + H G +GG Y + + + + W
Sbjct: 1014 NLFSVSNHYGGLDGGHYTAYCKNAARQRW 1042
>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana
GN=UBP25 PE=2 SV=1
Length = 661
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 32/301 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHR------FGDLTRKIW 245
+GL N+ T ++N +Q L PL NF L ++ HC + + F + ++I
Sbjct: 24 LGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSHCDTYVDGERKRDCPFCIVEKRIA 83
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ + + + +K + F++G Q + EF+ ++++ H+ KK
Sbjct: 84 RSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHNTSLRLKKLRYNGN 143
Query: 306 ECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLM-LGLDLPPPPL 364
E F G VVKEI G Q+ K G E+++ +M + L++
Sbjct: 144 EPFNGN-SVVKEI----FGGALQSQVKCLSCG-------AESNKADEIMDISLEILQSSS 191
Query: 365 FKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNN 424
K+ ++K Q + + K+ E+ ++V AR + + + P +++ ++RF
Sbjct: 192 VKESLQKFF--QSEILDGNNKYRCESCEKLV---TARKQMSILQAPNILVIQLKRF--GG 244
Query: 425 FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFV 483
F K ++F + L L +++ K ++ + +Y L IVH G PE G Y +V
Sbjct: 245 IFGGKIDKAISFG-EILVLSNFM----SKASKDPQPEYKLFGIIVHSGFSPESGHYYAYV 299
Query: 484 Q 484
+
Sbjct: 300 K 300
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 132/339 (38%), Gaps = 70/339 (20%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTE-KGSDGGDDHDNIT------TETSRMPFLML 355
I+ +P G + E + SD DD N+ E S++ L +
Sbjct: 327 IL---------ASGPVPSPPRRGGALHEEPELSD--DDRANLMWKRYLEREDSKIVDLFV 375
Query: 356 G-----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT 392
G L LP P + ++ LF ++ + E
Sbjct: 376 GQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAP 435
Query: 393 EVVRPHVARMRYRVTR------LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDY 446
R R + R T+ P+ ++LH+ RF+ + ++K+ V+FP++ L L D+
Sbjct: 436 VCDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDF 492
Query: 447 IPLPTPKENEKLRSK-YDLIANIVHDGKPEGGFYRVFVQ 484
++K+ S Y L A H G G Y +
Sbjct: 493 -------ASDKVGSPVYQLYALCNHSGSVHYGHYTALCR 524
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36
PE=1 SV=3
Length = 1121
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 53/313 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHA-RNF 250
GL+N+ T F+N TIQ L PL N+ L E+ R C + I A N
Sbjct: 122 AGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSFCMLCVMQNHIVQAFANS 181
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLH-------SDLRNTKKNTSI 303
+ P F++ + K + + FR G Q + EF+ + ++ + + L + T++
Sbjct: 182 GNAIKPVSFIRDLKKIA-RHFRFGNQEDAHEFLRYTIDAMQKACLNGCAKLDRQTQATTL 240
Query: 304 IYECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPP 362
+++ F G L VK ++S D +D P+L + L++
Sbjct: 241 VHQIFGGYLRSRVKCSVCKSVS-------------DTYD---------PYLDVALEI--- 275
Query: 363 PLFKDVMEKNIIPQVPLF---NILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRR 419
NI+ + LF ++L + + + A R+ + R + L ++R
Sbjct: 276 -----RQAANIVRALELFVKADVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKR 330
Query: 420 FTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGF 478
F NF K V +P + L ++ Y+ +N Y L A +VH G G
Sbjct: 331 FA--NFSGGKITKDVGYP-EFLNIRPYM-----SQNNGDPVMYGLYAVLVHSGYSCHAGH 382
Query: 479 YRVFVQRKSEELW 491
Y +V + S W
Sbjct: 383 YYCYV-KASNGQW 394
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQGELEVV--KEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G +VV KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDVVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIPQVP 378
L P PL KD VME ++P P
Sbjct: 479 L---PLPLKKDRVMEVFLVPADP 498
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 409 LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSK-YDLIAN 467
LPK +++H++RF+ N ++ +K T+V FP++ L + +++ N R YDLIA
Sbjct: 817 LPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC------NLSARPYVYDLIAV 870
Query: 468 IVHDGKPEGGFYRVFVQRKSEELW 491
H G G Y + + K W
Sbjct: 871 SNHYGAMGVGHYTAYAKNKLNGKW 894
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 125/340 (36%), Gaps = 72/340 (21%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT------TETSRMPFLMLG 356
I+ +P G E+ DD N+ E S++ L +G
Sbjct: 327 ILAN---------GPVPSPPRRGGAL-LEEPELSDDDRANLMWKRYLEREDSKIVDLFVG 376
Query: 357 -----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKK---FDGET 390
L LP P K + FN+ K + E
Sbjct: 377 QLKSCLKCQACGYRSTTFEVFCDLSLPIP---KKGFAGGKVSLRDCFNLFTKEEELESEN 433
Query: 391 VTEVVRPHVARMRYRVTR------LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELK 444
R R + R T+ P+ ++LH+ RF+ + ++K+ V+FP++ L L
Sbjct: 434 APVCDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLG 490
Query: 445 DYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQ 484
D+ ++ Y L A H G G Y +
Sbjct: 491 DF------ASDKAGSPVYQLYALCNHSGSVHYGHYTALCR 524
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 127/340 (37%), Gaps = 72/340 (21%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT------TETSRMPFLMLG 356
I+ P+ + G + SD DD N+ E S++ L +G
Sbjct: 327 ILAS------SPAPHPPR--LGGALLEEPELSD--DDRANLMWKRYLEREDSKIVDLFVG 376
Query: 357 -----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKK---FDGET 390
L LP P K + FN+ K + E
Sbjct: 377 QLKSCLKCQACGYRSTTFEVFCDLSLPIP---KKGFAGGKVSLRDCFNLFTKEEELESEN 433
Query: 391 VTEVVRPHVARMRYRVTR------LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELK 444
R R + R T+ P+ ++LH+ RF+ + ++K+ V+FP++ L L
Sbjct: 434 APVCDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLG 490
Query: 445 DYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQ 484
D+ ++ Y L A H G G Y +
Sbjct: 491 DF------ASDKAGSPVYQLYALCNHSGSVHYGHYTALCR 524
>sp|O60139|UBP4_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp4 PE=1 SV=2
Length = 593
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 152/361 (42%), Gaps = 46/361 (12%)
Query: 153 YTHSLEAGHHVYINLRTEKVYCLPDGYEINDP-------SLEDIRHVGLNNIKETDFVNV 205
Y + + +Y LR+ K+ P E+ +P S E+ + +GL N+ T ++N
Sbjct: 183 YFEDVSLAYKLYSMLRSLKLD--PHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNC 240
Query: 206 TIQSLMRVTPLRNFFL----IPENYRHCKSPL------VHRFGDLTRKIWHARNFKGQVS 255
+Q L L L + +N + K+PL F L + + + +S
Sbjct: 241 VLQCLFACKDLTIPMLQGRGLLQNI-NTKNPLGTGGKITSAFFSLLQSVLLNHG-QRSIS 298
Query: 256 PHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVV 315
P FL+ ++++ + F I Q + EF+++ L+ LH DL N+ + S I + +L
Sbjct: 299 PRNFLE-IVQSLNRDFSIDGQCDAQEFLNFFLDKLHEDL-NSNASRSPIAPLTEDQLSAR 356
Query: 316 KEIPKNTISGNDQNTEKGSDGGDDHDNIT--------------TETSRMPFLMLGL---D 358
+E+P + S + N S+ +N T T+ PF L + D
Sbjct: 357 EELPLSHFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDD 416
Query: 359 LPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMR 418
+ ++ + K P+ +L+ DG A+ +++LP+Y+I+ ++
Sbjct: 417 VSHVVSLQECLLKFSAPE-----LLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQ 471
Query: 419 RFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGF 478
RF + +K T + ++ + K +P + S Y+L A I H G+ E G
Sbjct: 472 RFKISVMGRKKIDTPLGLSLQ-IPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENGH 530
Query: 479 Y 479
Y
Sbjct: 531 Y 531
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 54/243 (22%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S +S N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSKSTCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQA 67
Query: 159 AGHHVYINLRTEKVYCL---------------PDG------------------------- 178
H++ +NL T +V+C P G
Sbjct: 68 KKHNLTVNLTTFRVWCYACEKEVFLEPRLAAHPPGPAPKFSEQDSPPPSHPLKAVPIAVA 127
Query: 179 ----YEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSP- 232
E D L+ G+ N+ + ++N +Q+L PL FFL R K P
Sbjct: 128 DEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH R V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLVSEVWH-RKRPSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHE 245
Query: 293 DLR 295
+L+
Sbjct: 246 ELK 248
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L+L+ ++ KE + YDL
Sbjct: 572 KVLRLPEILCIHLKRFRHEVMYSFKISSHVSFPLEGLDLRPFL----AKECTSQITTYDL 627
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491
++ I H G G Y + Q W
Sbjct: 628 LSVICHHGTAGSGHYIAYCQNVINGQW 654
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIPQVP 378
L P PL KD VME ++P P
Sbjct: 479 L---PLPLKKDRVMEVFLVPADP 498
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 400 ARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLR 459
A ++ + LPK +++H++RF+ N ++ +K T+V FP++ L + +++ N R
Sbjct: 808 ATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC------NLSAR 861
Query: 460 SK-YDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
YDLIA H G G Y + + K W
Sbjct: 862 PYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKW 894
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIPQVP 378
L P PL KD VME ++P P
Sbjct: 479 L---PLPLKKDRVMEIFLVPADP 498
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 400 ARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLR 459
A ++ + LPK +++H++RF+ N ++ +K T+V FPV+ L + +++ P+ +
Sbjct: 808 ATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARP----- 862
Query: 460 SKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
YDLIA H G G Y + + K W
Sbjct: 863 YVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKW 894
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana
GN=UBP24 PE=1 SV=1
Length = 551
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 143/347 (41%), Gaps = 52/347 (14%)
Query: 184 PSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFF--LIPENYRHCKSPLVHRFGDLT 241
P ++D GL N F+N T+Q+L+ +P + ++ SP + F +
Sbjct: 189 PPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPTLAAFSEFI 248
Query: 242 RK--IWHARNFKGQVSPHE----FLQAVMKASKKRFRIGV---------QSNPVEFMSWL 286
+ + + + + V+ E F A+ + + F V Q + EF+S++
Sbjct: 249 SELDVPSSSSIRNNVTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFI 308
Query: 287 LNTLHSDL--------RNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD--- 335
++ +H +L + T +S+I E PKN + + S+
Sbjct: 309 MDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQSFVPSELSE 368
Query: 336 --GGDDHDNITTETSRM-----PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDG 388
GG + + ++ P+L+L LD+ P + + I + LF+ + +G
Sbjct: 369 IFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGV------QGIEDALHLFSAQEDLEG 422
Query: 389 --ETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVK-NLELKD 445
+VT A ++ +L K MILH+ RF+ + K V FP++ NL
Sbjct: 423 YRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRSH 482
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491
+ L NE LR Y+L+A I H G P G Y +RK+ + W
Sbjct: 483 LVSL----SNESLR--YELVATITHHGWDPSKGHYTTDARRKNGQ-W 522
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 377 VPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTL 433
+ LF ++ + E + + +A + + LP+ +I+H++RF+ + EK TL
Sbjct: 744 IKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTL 803
Query: 434 VNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
V FP+++L+ +++ P + + L KYDLIA H G G Y F K W
Sbjct: 804 VQFPIRDLDFSEFVIKPKNESSPDLY-KYDLIAVSNHYGGMRDGHYTTFACNKDSGQW 860
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPE-NYRH---CKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L V L +FL + E N+R+ K L + DL ++
Sbjct: 257 CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQ 316
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
W + + P+ F V + + F Q + E +S+LL+ LH DL KK +
Sbjct: 317 TWSG--YHRSIVPNVFKNKVGHFASQ-FLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYV 373
Query: 304 IYECFQG----ELEVVKEIPKNTISGND-------QNTEKGSDGGDDHDNITTETSRMPF 352
E G +LEV +E +N ND K + D N++ PF
Sbjct: 374 --ELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFD--PF 429
Query: 353 LMLGLDLPPPPLFKDVMEKNIIPQVP 378
L +P P + V+E +P P
Sbjct: 430 CYLS--VPLPVCSRRVLEVFFVPMDP 453
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a
PE=2 SV=1
Length = 371
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 134/342 (39%), Gaps = 91/342 (26%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLI-------PENYRHCKSPLVHRFGDLTRK 243
+ GL N T + N +Q+L P R L EN C + L H + RK
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQPRRKENLLTCLADLFHSIANQKRK 97
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK---- 299
+ G + P +F+ + K ++ F +Q + EF+++LLNT+ L+ +K
Sbjct: 98 V-------GVIPPKKFITRLRKENE-LFDNYMQQDAHEFLNYLLNTIADLLQEERKQDKQ 149
Query: 300 -------------------NTSIIYECFQGEL-EVVKEIPKNTISGNDQNTEKGSDGGDD 339
+T+ ++E FQG L + + TIS D++
Sbjct: 150 NGKLANGTLDSQNNNSTPPSTTWVHEIFQGTLTNETRCLTCETISSKDED---------- 199
Query: 340 HDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKF-DGETVT------ 392
FL L +D +E+N + + L+ F + ET+
Sbjct: 200 ------------FLDLSVD----------VEQN----TSITHCLRGFSNTETLCSEYKYY 233
Query: 393 --EVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLP 450
E A R RV +LP + LH++RF K +++ L V LEL+ +
Sbjct: 234 CEECRSKQEAHKRMRVKKLPMILALHLKRF-KYMEQLQRYTKLSYRVVFPLELRLFNTSG 292
Query: 451 TPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQRKSEELW 491
E+L YDL+A +VH G P G Y V KS + W
Sbjct: 293 DATNPERL---YDLVAVVVHCGSGPNRGHYIAIV--KSHDFW 329
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42
PE=3 SV=1
Length = 1333
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 51/312 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 111 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNP 170
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 171 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 230
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 231 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 268
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + L ++RF
Sbjct: 269 SVNKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRF 320
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 321 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--IYVLYAVLVHTGFNCHAGHY 372
Query: 480 RVFVQRKSEELW 491
++ + S LW
Sbjct: 373 FCYI-KASNGLW 383
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42
PE=2 SV=1
Length = 1324
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 51/312 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 110 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNP 169
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 170 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 229
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 230 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 267
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + + ++RF
Sbjct: 268 SVTKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRF 319
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 320 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--IYVLYAVLVHTGFNCHAGHY 371
Query: 480 RVFVQRKSEELW 491
++ + S LW
Sbjct: 372 FCYI-KASNGLW 382
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12
PE=2 SV=1
Length = 372
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 130/331 (39%), Gaps = 68/331 (20%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLI-------PENYRHCKSPLVHRFGDLTRK 243
+ GL N T + N +Q+L P R L EN C + L H + RK
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQPRRKENLLTCLADLFHSIANQKRK 97
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+ G + P +F+ + K ++ F +Q + EF+++LLNT+ L+ +K
Sbjct: 98 V-------GVIPPKKFITRLRKENE-LFDNYMQQDAHEFLNYLLNTIADLLQEERKQDKT 149
Query: 304 IYECFQGELEV-------------VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM 350
G L+ V EI + T++ + + D D
Sbjct: 150 NGRLANGSLDSQNHNSNAPPPSTWVHEIFQGTLTNETRCLTCETISSKDED--------- 200
Query: 351 PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKF-DGETVT--------EVVRPHVAR 401
FL L +D +E+N + + L+ F + ET+ E A
Sbjct: 201 -FLDLSVD----------VEQN----TSITHCLRGFSNTETLCSEYKYYCEECRSKQEAH 245
Query: 402 MRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSK 461
R RV +LP + LH++RF K +++ L V LEL+ + E+L
Sbjct: 246 KRMRVKKLPMILALHLKRF-KYMEQLQRYTKLSYRVVFPLELRLFNTSGDATNPERL--- 301
Query: 462 YDLIANIVHDGK-PEGGFYRVFVQRKSEELW 491
YDL+A +VH G P G Y V KS + W
Sbjct: 302 YDLVAVVVHCGSGPNRGHYIAIV--KSHDFW 330
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus
GN=Usp42 PE=3 SV=1
Length = 1325
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 51/312 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 110 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNP 169
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 170 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 229
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 230 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 267
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + + ++RF
Sbjct: 268 SVTKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRF 319
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 320 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--IYVLYAVLVHTGFNCHAGHY 371
Query: 480 RVFVQRKSEELW 491
++ + S LW
Sbjct: 372 FCYI-KASNGLW 382
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42
PE=1 SV=3
Length = 1324
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 51/312 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 111 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNP 170
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 171 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 230
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 231 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 268
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + L ++RF
Sbjct: 269 SVNKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRF 320
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 321 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--VYVLYAVLVHTGFNCHAGHY 372
Query: 480 RVFVQRKSEELW 491
++ + S LW
Sbjct: 373 FCYI-KASNGLW 383
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36
PE=2 SV=1
Length = 1098
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 126/313 (40%), Gaps = 53/313 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHA-RNF 250
GL+N+ T F+N TIQ L PL N+ L E+ R C + + A N
Sbjct: 122 AGLHNLGNTCFLNSTIQCLTYTPPLANYLLSKEHARSCHQGGFCMLCLMQNHMVQAFANS 181
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL-------HSDLRNTKKNTSI 303
+ P F++ + K + + FR G Q + EF+ + ++ + ++ L + T++
Sbjct: 182 GNAIKPVSFIRDLKKIA-RHFRFGNQEDAHEFLRYTIDAMQKACLNGYAKLDRQTQATTL 240
Query: 304 IYECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPP 362
+++ F G L VK ++S D +D P+L + L++
Sbjct: 241 VHQIFGGYLRSRVKCSVCKSVS-------------DTYD---------PYLDIALEI--- 275
Query: 363 PLFKDVMEKNIIPQVPLF---NILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRR 419
NI+ + LF ++L + + + A R+ + R + L ++R
Sbjct: 276 -----RQAANIVRALELFVKSDVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKR 330
Query: 420 FTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGF 478
F NF K V +P + L ++ Y+ ++ Y L A +VH G G
Sbjct: 331 FA--NFSGGKITKDVGYP-EFLNIRPYM-----SQSSGDPVMYGLYAVLVHSGYSCHAGH 382
Query: 479 YRVFVQRKSEELW 491
Y +V + S W
Sbjct: 383 YYCYV-KASNGQW 394
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSPLVHR------FGDLTRK 243
GL N+ T F+N T+Q L P+ +FL ++YR + K+PL R FG+L RK
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPIVEYFL--QDYRSDINAKNPLGMRGELAIAFGELLRK 359
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W + + V+P F + + + + F Q + E +++LL+ LH DL K+ I
Sbjct: 360 LWSSG--QNTVAPRAFKTKLARFAPQ-FSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYI 416
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 23/144 (15%)
Query: 362 PPLFKDVMEKNIIPQ-VPLFNILKKFDGETVTEVVRP------------HVARMRYRVTR 408
P + K+V+ K + + + LF+ L+ F E E + P A + + +
Sbjct: 717 PKVHKNVLAKKTMQEGISLFSCLEAFLAE---EPLGPDDMWYCPGCKEHRQANKKLDLWK 773
Query: 409 LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSK-YDLIAN 467
LP ++ H++RFT + +F K TLVNF + +L+L Y+ +NE +S Y+L A
Sbjct: 774 LPDILVFHLKRFTYSRYFKNKIDTLVNFHIHDLDLSKYV------KNEDGQSYLYELYAI 827
Query: 468 IVHDGKPEGGFYRVFVQRKSEELW 491
H G GG Y + + E W
Sbjct: 828 SNHYGGLGGGHYTAYAKLMDETKW 851
>sp|Q70EL3|UBP50_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 50 OS=Homo sapiens
GN=USP50 PE=2 SV=1
Length = 339
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 122/333 (36%), Gaps = 65/333 (19%)
Query: 182 NDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCK--------SPL 233
N P + + GL N+ T VN Q L + PL +FL + + S +
Sbjct: 36 NQPHFQGV--TGLWNLGNTCCVNAISQCLCSILPLVEYFLTGKYITALQKFLLPSDCSEV 93
Query: 234 VHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSD 293
F L +W + VSP F A+ F +Q + EF+ +LN LH
Sbjct: 94 ATAFAYLMTDMWLGDS--DCVSPEIFWSALGNLYPA-FTKKMQQDAQEFLICVLNELHEA 150
Query: 294 LRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS----- 348
L+ + ++ EKGS ITTETS
Sbjct: 151 LKKYHYS-------------------------RRRSYEKGSTQRCCRKWITTETSIITQL 185
Query: 349 ---RMPFLMLGLDLPPPPLFKDVMEKNIIP-----QVPLFNILKKF---DGETVTEVVRP 397
++ + ++ L +V +P + L + L+ F D T +
Sbjct: 186 FEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDALTWNNEIHC 245
Query: 398 HVAR------MRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPT 451
+R +++ PK +I H++RF K T +++P+ NL+L YI
Sbjct: 246 SFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLDLTPYICSIF 305
Query: 452 PKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQ 484
K KY+L A + H G +GG Y F +
Sbjct: 306 RK-----YPKYNLCAVVNHFGDLDGGHYTAFCK 333
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Fragment) OS=Canis
familiaris GN=USP11 PE=2 SV=1
Length = 445
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 409 LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANI 468
LP+ +I+H++RF+ F EK TLV FP+++L+ +++ P + +L KYDLIA
Sbjct: 302 LPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNESAPELY-KYDLIAVS 360
Query: 469 VHDGKPEGGFYRVFVQRK 486
H G G Y F K
Sbjct: 361 NHYGGLRDGHYTTFACNK 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,116,331
Number of Sequences: 539616
Number of extensions: 9688678
Number of successful extensions: 52670
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 47120
Number of HSP's gapped (non-prelim): 3942
length of query: 491
length of database: 191,569,459
effective HSP length: 122
effective length of query: 369
effective length of database: 125,736,307
effective search space: 46396697283
effective search space used: 46396697283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)