Query 011215
Match_columns 491
No_of_seqs 311 out of 1836
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 22:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 100.0 3.7E-91 8.1E-96 737.7 35.1 375 106-491 1-413 (440)
2 KOG2026 Spindle pole body prot 100.0 3.7E-83 8.1E-88 628.5 24.4 371 99-491 7-412 (442)
3 KOG0944 Ubiquitin-specific pro 100.0 9.6E-62 2.1E-66 504.5 24.0 296 121-450 179-550 (763)
4 COG5207 UBP14 Isopeptidase T [ 100.0 1E-52 2.2E-57 424.2 19.6 312 102-449 152-539 (749)
5 cd02660 Peptidase_C19D A subfa 100.0 5E-50 1.1E-54 408.9 27.9 274 193-491 2-301 (328)
6 cd02658 Peptidase_C19B A subfa 100.0 9.5E-50 2.1E-54 404.2 26.7 258 193-491 1-284 (311)
7 cd02663 Peptidase_C19G A subfa 100.0 7.2E-50 1.6E-54 403.5 24.2 237 193-491 1-265 (300)
8 cd02668 Peptidase_C19L A subfa 100.0 1.6E-49 3.4E-54 405.3 25.9 250 193-491 1-276 (324)
9 cd02657 Peptidase_C19A A subfa 100.0 3.7E-49 8E-54 398.7 25.4 254 193-491 1-271 (305)
10 cd02667 Peptidase_C19K A subfa 100.0 1.2E-48 2.5E-53 390.8 21.9 220 193-487 1-227 (279)
11 cd02671 Peptidase_C19O A subfa 100.0 6.3E-47 1.4E-51 386.4 24.8 252 190-484 23-295 (332)
12 cd02664 Peptidase_C19H A subfa 100.0 4.3E-46 9.3E-51 380.4 24.0 241 193-487 1-269 (327)
13 KOG1865 Ubiquitin carboxyl-ter 100.0 7.4E-47 1.6E-51 390.1 17.1 252 193-491 110-381 (545)
14 cd02661 Peptidase_C19E A subfa 100.0 2.3E-45 5E-50 369.4 24.1 253 192-491 2-277 (304)
15 cd02659 peptidase_C19C A subfa 100.0 3.1E-45 6.8E-50 374.5 24.6 261 191-491 2-281 (334)
16 COG5560 UBP12 Ubiquitin C-term 100.0 1.6E-45 3.5E-50 380.5 10.5 270 193-491 267-793 (823)
17 KOG1867 Ubiquitin-specific pro 100.0 2.9E-42 6.3E-47 364.4 19.5 329 131-491 54-455 (492)
18 COG5533 UBP5 Ubiquitin C-termi 100.0 2.6E-42 5.7E-47 331.5 16.1 265 184-491 64-384 (415)
19 cd02662 Peptidase_C19F A subfa 100.0 1.3E-41 2.9E-46 332.7 19.9 182 193-486 1-187 (240)
20 KOG1873 Ubiquitin-specific pro 100.0 7E-42 1.5E-46 359.3 8.9 160 130-294 90-324 (877)
21 PF00443 UCH: Ubiquitin carbox 100.0 5.5E-39 1.2E-43 314.0 19.9 220 191-491 1-240 (269)
22 cd02674 Peptidase_C19R A subfa 100.0 2.8E-38 6E-43 306.0 16.9 194 193-491 1-203 (230)
23 cd02666 Peptidase_C19J A subfa 100.0 9.6E-39 2.1E-43 326.4 12.1 251 192-491 2-310 (343)
24 KOG1868 Ubiquitin C-terminal h 100.0 3.7E-38 8E-43 339.0 11.6 270 186-491 296-617 (653)
25 cd02665 Peptidase_C19I A subfa 100.0 5.4E-36 1.2E-40 288.8 14.6 183 193-491 1-193 (228)
26 cd02257 Peptidase_C19 Peptidas 100.0 3.5E-33 7.5E-38 268.9 18.9 205 193-491 1-223 (255)
27 cd02673 Peptidase_C19Q A subfa 100.0 2.1E-33 4.5E-38 275.0 16.4 198 194-491 2-215 (245)
28 KOG1866 Ubiquitin carboxyl-ter 100.0 1.8E-33 3.9E-38 295.3 5.0 267 184-491 88-385 (944)
29 COG5077 Ubiquitin carboxyl-ter 100.0 4.4E-33 9.6E-38 292.6 7.2 262 186-491 188-460 (1089)
30 KOG1870 Ubiquitin C-terminal h 100.0 7E-31 1.5E-35 295.7 12.6 271 190-491 245-812 (842)
31 cd02672 Peptidase_C19P A subfa 100.0 1.9E-29 4.1E-34 250.2 10.9 215 187-491 11-247 (268)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 1.6E-29 3.5E-34 291.2 10.8 257 192-491 171-440 (1093)
33 PF13423 UCH_1: Ubiquitin carb 99.9 2E-26 4.4E-31 232.1 21.7 261 193-491 2-287 (295)
34 cd02670 Peptidase_C19N A subfa 99.9 9.9E-26 2.1E-30 219.3 13.6 174 193-487 1-193 (241)
35 KOG4598 Putative ubiquitin-spe 99.9 6.1E-27 1.3E-31 244.1 1.0 250 182-491 78-399 (1203)
36 KOG1864 Ubiquitin-specific pro 99.9 3.7E-25 7.9E-30 238.0 11.4 256 191-486 232-536 (587)
37 KOG1871 Ubiquitin-specific pro 99.9 2E-22 4.3E-27 200.5 8.6 266 189-491 26-386 (420)
38 KOG1872 Ubiquitin-specific pro 99.9 2.2E-22 4.9E-27 205.0 4.2 264 192-491 106-433 (473)
39 PF02148 zf-UBP: Zn-finger in 99.7 3.8E-17 8.3E-22 126.4 3.7 62 124-185 1-63 (63)
40 smart00290 ZnF_UBP Ubiquitin C 99.1 5.6E-11 1.2E-15 87.5 3.6 48 124-171 2-49 (50)
41 KOG1275 PAB-dependent poly(A) 98.8 1.1E-08 2.4E-13 111.7 9.9 271 188-485 496-815 (1118)
42 KOG0804 Cytoplasmic Zn-finger 98.8 3.1E-09 6.8E-14 108.3 2.5 62 120-181 227-288 (493)
43 KOG2026 Spindle pole body prot 98.3 6.6E-08 1.4E-12 97.2 -1.4 167 1-176 1-181 (442)
44 PF15499 Peptidase_C98: Ubiqui 97.4 0.00055 1.2E-08 66.2 8.6 217 195-491 6-245 (275)
45 KOG1864 Ubiquitin-specific pro 96.9 0.0015 3.2E-08 71.7 5.9 101 194-295 34-153 (587)
46 PF08715 Viral_protease: Papai 96.6 0.03 6.5E-07 57.0 12.3 76 193-292 101-179 (320)
47 PF09416 UPF1_Zn_bind: RNA hel 86.8 0.54 1.2E-05 42.5 2.7 51 129-179 10-68 (152)
48 PF05408 Peptidase_C28: Foot-a 86.1 0.41 9E-06 44.4 1.7 32 190-221 32-65 (193)
49 KOG1887 Ubiquitin carboxyl-ter 85.5 0.25 5.5E-06 55.2 -0.0 76 403-491 675-752 (806)
50 KOG3556 Familial cylindromatos 61.2 19 0.0004 38.9 6.0 35 404-438 516-550 (724)
51 cd00729 rubredoxin_SM Rubredox 57.3 5.8 0.00013 26.5 1.1 14 133-146 2-15 (34)
52 cd00350 rubredoxin_like Rubred 48.4 9.2 0.0002 25.2 0.9 14 133-146 1-14 (33)
53 KOG1802 RNA helicase nonsense 45.0 15 0.00033 40.9 2.5 50 131-180 72-129 (935)
54 PF08790 zf-LYAR: LYAR-type C2 39.0 18 0.00039 23.2 1.1 19 134-152 1-19 (28)
55 KOG0944 Ubiquitin-specific pro 37.7 15 0.00033 40.7 1.1 37 129-169 36-72 (763)
56 KOG0943 Predicted ubiquitin-pr 36.0 29 0.00063 41.2 2.9 11 281-291 2113-2123(3015)
57 KOG3362 Predicted BBOX Zn-fing 35.2 12 0.00026 33.4 -0.1 26 120-146 117-142 (156)
58 PF03117 Herpes_UL49_1: UL49 f 32.3 43 0.00094 32.8 3.1 56 123-180 93-161 (245)
59 COG1592 Rubrerythrin [Energy p 28.0 29 0.00063 32.1 1.1 13 133-145 134-146 (166)
60 PF11931 DUF3449: Domain of un 26.2 11 0.00023 35.8 -2.1 27 133-162 101-128 (196)
61 PF09026 CENP-B_dimeris: Centr 24.7 25 0.00053 29.3 0.0 8 107-114 52-59 (101)
62 KOG1867 Ubiquitin-specific pro 23.7 30 0.00065 37.6 0.4 72 121-216 31-102 (492)
63 PF08792 A2L_zn_ribbon: A2L zi 21.3 1.1E+02 0.0025 20.2 2.7 8 134-141 22-29 (33)
64 PF14690 zf-ISL3: zinc-finger 21.0 59 0.0013 22.7 1.4 43 135-177 4-47 (47)
65 PF03048 Herpes_UL92: UL92 fam 20.7 74 0.0016 30.1 2.3 47 130-176 17-69 (192)
66 KOG0957 PHD finger protein [Ge 20.4 1.9E+02 0.0041 31.3 5.4 57 123-184 121-183 (707)
67 PF00096 zf-C2H2: Zinc finger, 20.3 54 0.0012 19.0 0.9 12 134-145 1-12 (23)
68 PRK14890 putative Zn-ribbon RN 20.1 42 0.00092 25.4 0.5 20 124-145 39-58 (59)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-91 Score=737.75 Aligned_cols=375 Identities=62% Similarity=1.041 Sum_probs=333.4
Q ss_pred cchhcccccccCCCCCccccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCCc
Q 011215 106 PYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS 185 (491)
Q Consensus 106 ~~l~ti~r~~l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~~ 185 (491)
|||+||||++|||||||+|++|+++.|+|+||+||+||||||+++||+.|+.+++||||||++|++||||||+++|.|++
T Consensus 1 ~yl~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d~~ 80 (440)
T cd02669 1 PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIIDSS 80 (440)
T ss_pred CchhhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhc---------------------------------CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCC---CC
Q 011215 186 LEDIRHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HC 229 (491)
Q Consensus 186 L~di~~~---------------------------------GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~---~~ 229 (491)
|++|++. ||+|+|||||||||||+|+|+|+||++|+...+.. ..
T Consensus 81 l~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~ 160 (440)
T cd02669 81 LDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDR 160 (440)
T ss_pred HHHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCC
Confidence 9988742 99999999999999999999999999999644332 24
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcC-CCCCCCcccCc
Q 011215 230 KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECF 308 (491)
Q Consensus 230 ~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~-~~~~sii~~~F 308 (491)
..+++++|+.|++++|+++.++.+|+|++|+++++..+++.|.++.||||+|||.|||+.||+++++. +...++|+++|
T Consensus 161 ~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F 240 (440)
T cd02669 161 KSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCF 240 (440)
T ss_pred CcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceecc
Confidence 56899999999999999988889999999999999886788999999999999999999999999753 34678999999
Q ss_pred eeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccc
Q 011215 309 QGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDG 388 (491)
Q Consensus 309 ~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~ 388 (491)
+|+++++++|..|.... ..+...|..|+...+++.+||++|+|+||..+++++....+.+|+++|++||++|++
T Consensus 241 ~G~l~~~~~c~~~~~~~------~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~~ 314 (440)
T cd02669 241 QGKVQIETQKIKPHAEE------EGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYDG 314 (440)
T ss_pred CceEEEEEEeecccccc------cccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcCC
Confidence 99999999999886311 011112445565788899999999999999999999888889999999999999998
Q ss_pred ccceeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEE
Q 011215 389 ETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANI 468 (491)
Q Consensus 389 ~~~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI 468 (491)
+++.. ...++|+++|.+||+||+||||||+++.+..+||++.|+||++.|||++|+..+.. ......+|+|+|||
T Consensus 315 ~~c~~---~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~--~~~~~~~Y~L~avI 389 (440)
T cd02669 315 KTETE---LKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKP--SLNLSTKYNLVANI 389 (440)
T ss_pred cccee---cccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccc--ccCCCceEEEEEEE
Confidence 77544 45678999999999999999999999888889999999999866899999974322 22235789999999
Q ss_pred EEeccC-CCCcEEEEEEeCCCCCC
Q 011215 469 VHDGKP-EGGFYRVFVQRKSEELW 491 (491)
Q Consensus 469 ~H~G~~-~~GHY~~~vr~~~~~~W 491 (491)
+|.|++ ++|||+||+|+..+|+|
T Consensus 390 ~H~G~~~~sGHY~a~v~~~~~~~W 413 (440)
T cd02669 390 VHEGTPQEDGTWRVQLRHKSTNKW 413 (440)
T ss_pred EEeccCCCCeeEEEEEEcCCCCeE
Confidence 999998 99999999999778999
No 2
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=3.7e-83 Score=628.54 Aligned_cols=371 Identities=64% Similarity=1.068 Sum_probs=341.1
Q ss_pred cccCCCCcchhcccccccCCCCCccccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecC-cceeecCC
Q 011215 99 VEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRT-EKVYCLPD 177 (491)
Q Consensus 99 ~~~~~~c~~l~ti~r~~l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t-~~vyc~~c 177 (491)
......|+||+||+|++||||+||.|++++|+.|+||||+||+||||||++|||+.|++++|||+|+|+.| ++.|++|.
T Consensus 7 ~~~~~~~~yldtv~r~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe 86 (442)
T KOG2026|consen 7 KKQEPNYAYLETVVRRVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPE 86 (442)
T ss_pred cccCcchHhhhhhhhhhccccCCCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecch
Confidence 44557789999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ceeccCCchhhhhhc----------------------------------CCcCCCCcchhHHHHHHHhCCHHHHHHHcCC
Q 011215 178 GYEINDPSLEDIRHV----------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFFLIP 223 (491)
Q Consensus 178 ~~~v~d~~L~di~~~----------------------------------GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~ 223 (491)
++++.|+++.+|+++ ||+|+.++.|.|+|||+|+|++|+|+||+..
T Consensus 87 ~~ei~d~s~~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~ 166 (442)
T KOG2026|consen 87 NYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE 166 (442)
T ss_pred hccccCchhhhhhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc
Confidence 999999999999863 9999999999999999999999999999987
Q ss_pred CCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCC
Q 011215 224 ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303 (491)
Q Consensus 224 ~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~si 303 (491)
+++....+.++++|+.|+|+||++++|+++||||+|+|++...|+++|..++|.||.|||+||||.||.+++++++.+||
T Consensus 167 ~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SI 246 (442)
T KOG2026|consen 167 ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSI 246 (442)
T ss_pred ccccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhH
Confidence 77788889999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHH
Q 011215 304 IYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNIL 383 (491)
Q Consensus 304 i~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L 383 (491)
|+..|+|++++..+-..-. +. .........||++|+||||+.|+|+|+++++|||||.|.++|
T Consensus 247 i~~~fqG~~ri~k~~~~~~-------~~----------~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL 309 (442)
T KOG2026|consen 247 IHKSFQGEVRIVKEKQGEA-------SE----------NENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLL 309 (442)
T ss_pred hhHhhcceEEeeeeccccc-------cc----------cccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHH
Confidence 9999999999977643310 00 226788899999999999999999999999999999999999
Q ss_pred hhcccccceeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceE
Q 011215 384 KKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYD 463 (491)
Q Consensus 384 ~~f~~~~~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~ 463 (491)
.||+|.+..+..+...+ +|+++.++|+|||||++||.+|+|+.+||+|.|+||...+|+.++...... ..... ..|.
T Consensus 310 ~Kf~g~t~~e~~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~-~~~~~-~~~~ 386 (442)
T KOG2026|consen 310 KKFDGETVTEVVTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKA-VNHKV-TQYS 386 (442)
T ss_pred HHhcCceeeeecchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhccc-ccCcc-cccc
Confidence 99999999998888777 999999999999999999999999999999999999656888777653322 22233 7799
Q ss_pred EEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 464 LIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 464 L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
|+|+++|. .+.|||+++++++++++|
T Consensus 387 ~~~N~i~~--~e~~~~riqi~~~~s~kW 412 (442)
T KOG2026|consen 387 LVANAIHE--DEDGNFRIQIYDNSSEKW 412 (442)
T ss_pred chhhhhcC--cccCceEEEEEeCCCcce
Confidence 99999998 789999999999999999
No 3
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-62 Score=504.50 Aligned_cols=296 Identities=24% Similarity=0.371 Sum_probs=262.7
Q ss_pred CccccccCCCCceEEecccCcccccC------CCCChhcccccccCCcEEEEecC-----cceeecCCceeccCCchhhh
Q 011215 121 EKFCSVSLSNLNVYACLVCGKYYQGR------GQKSHAYTHSLEAGHHVYINLRT-----EKVYCLPDGYEINDPSLEDI 189 (491)
Q Consensus 121 ~k~Cs~~ls~~nl~~CL~CG~~~~Gr------~~~sha~~H~~~~~H~v~v~l~t-----~~vyc~~c~~~v~d~~L~di 189 (491)
...|+.|.-+.|||+||+||.++||| |+|+||..||.+++|||+|+|+| ++||||+|+++|.||.|+.+
T Consensus 179 gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v~dPnl~~h 258 (763)
T KOG0944|consen 179 GWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEVRDPNLESH 258 (763)
T ss_pred cceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccccCccHHHH
Confidence 46899998889999999999999999 57999999999999999999998 79999999999999998776
Q ss_pred hh-----------------------------------------------cCCcCCCCcchhHHHHHHHhCCHHHHHHHcC
Q 011215 190 RH-----------------------------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLI 222 (491)
Q Consensus 190 ~~-----------------------------------------------~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~ 222 (491)
.. +||+|+||+||||||||+|+++|.|..+++.
T Consensus 259 l~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~ 338 (763)
T KOG0944|consen 259 LSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLE 338 (763)
T ss_pred HHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhcc
Confidence 52 2999999999999999999999999998885
Q ss_pred CCCC-----CCCCChHHHHHHHHHHHHHcCCCCC--------CCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHH
Q 011215 223 PENY-----RHCKSPLVHRFGDLTRKIWHARNFK--------GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNT 289 (491)
Q Consensus 223 ~~~~-----~~~~~~l~~~l~~L~~~l~s~~~fk--------~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~ 289 (491)
..++ ..+..++.++|.+|+++|.+++..+ .+|+|.+|+..|++. ++.|+..+||||+|||.+||+.
T Consensus 339 ~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igkn-HpeFst~~QQDA~EFllfLl~k 417 (763)
T KOG0944|consen 339 QERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKN-HPEFSTNRQQDAQEFLLFLLEK 417 (763)
T ss_pred ccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCC-CccccchhhhhHHHHHHHHHHH
Confidence 4332 2345689999999999999987644 489999999999999 9999999999999999999999
Q ss_pred HHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCccccc
Q 011215 290 LHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369 (491)
Q Consensus 290 L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~ 369 (491)
|.+....+ ...++++|.+.++.+++|..|. .++++.++.+.+.|+||...
T Consensus 418 i~~n~rs~---~~nptd~frF~ve~Rv~C~~c~---------------------kVrYs~~~~~~i~lpv~~~~------ 467 (763)
T KOG0944|consen 418 IRENSRSS---LPNPTDLFRFEVEDRVSCLGCR---------------------KVRYSYESEYLIQLPVPMTN------ 467 (763)
T ss_pred Hhhccccc---CCCHHHHHHhhhhhhhhhhccc---------------------cccccchhheeeEeeccccc------
Confidence 99855433 1468999999999999999987 88999999999999998521
Q ss_pred ccccCCCCCHHHHHhhccccc-----ceeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCcccccc
Q 011215 370 EKNIIPQVPLFNILKKFDGET-----VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELK 444 (491)
Q Consensus 370 ~~~~~p~vsL~~~L~~f~~~~-----~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~ 444 (491)
.+..++++..||+.|+... +..|+.++.|+|+.+|++||+|||||++||++++|+++|+...|..|+. ||++
T Consensus 468 --~v~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~-ldls 544 (763)
T KOG0944|consen 468 --EVREKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEE-LDLS 544 (763)
T ss_pred --cccccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchh-hchh
Confidence 2566799999999999883 3458889999999999999999999999999999999999999999975 9999
Q ss_pred CCCCCC
Q 011215 445 DYIPLP 450 (491)
Q Consensus 445 ~y~~~~ 450 (491)
.|.+..
T Consensus 545 ~~rs~g 550 (763)
T KOG0944|consen 545 SYRSKG 550 (763)
T ss_pred hhhhcC
Confidence 998654
No 4
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-52 Score=424.20 Aligned_cols=312 Identities=21% Similarity=0.265 Sum_probs=252.6
Q ss_pred CCCCcchhccccc---ccCCCCCccccccCCCCceEEecccCcccccC-----CCCChhcccccccCCcEEEEecC----
Q 011215 102 RRDCPYLDTVNRQ---VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGR-----GQKSHAYTHSLEAGHHVYINLRT---- 169 (491)
Q Consensus 102 ~~~c~~l~ti~r~---~l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr-----~~~sha~~H~~~~~H~v~v~l~t---- 169 (491)
...|+|.-..... +-..+. -.||.|....|||+||+||.++||| +++|||+.||.+++||++|+|++
T Consensus 152 ~~tC~H~~n~~~~s~~~~ni~~-~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~ 230 (749)
T COG5207 152 EVTCVHGCNEGPSSIEMGNIGG-LKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKE 230 (749)
T ss_pred cccccccCCCCCCcccccccCC-ceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEccccccc
Confidence 3679887654321 122333 4577776679999999999999999 46999999999999999999986
Q ss_pred -cceeecCCceeccC-C--chh---------------------hhh--------------------------hcCCcCCC
Q 011215 170 -EKVYCLPDGYEIND-P--SLE---------------------DIR--------------------------HVGLNNIK 198 (491)
Q Consensus 170 -~~vyc~~c~~~v~d-~--~L~---------------------di~--------------------------~~GL~NlG 198 (491)
.++|||.|+.++.. + .+. +.. ++||.|+|
T Consensus 231 ~~diyCY~CD~e~R~~~n~n~~s~~~~fGinIa~~~~~Eksl~~lq~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNlG 310 (749)
T COG5207 231 DCDIYCYLCDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINLG 310 (749)
T ss_pred cccEEEEecCcccccCCcccccceeeeeccchhhccchHHHHHHHHHhhhcCcchhccccCchhhcccCCCCccceEecC
Confidence 79999999999642 2 111 110 23999999
Q ss_pred CcchhHHHHHHHhCCHHHHHHHcCCCCC-----CCCCChHHHHHHHHHHHHHcCC--CCCCCCCHHHHHHHHHhhccccc
Q 011215 199 ETDFVNVTIQSLMRVTPLRNFFLIPENY-----RHCKSPLVHRFGDLTRKIWHAR--NFKGQVSPHEFLQAVMKASKKRF 271 (491)
Q Consensus 199 NTCYmNsVLQ~L~~ip~fr~~~l~~~~~-----~~~~~~l~~~l~~L~~~l~s~~--~fk~~vsP~~ll~~i~~~s~~~F 271 (491)
|+||+|||||.|+....+...|....++ ..+..+|.|++.+|+.+|.... .+...|+|..|+..|+.. +++|
T Consensus 311 NsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~-h~eF 389 (749)
T COG5207 311 NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQD-HPEF 389 (749)
T ss_pred CeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCC-chhh
Confidence 9999999999999998887666544443 2345689999999999998743 467899999999999999 9999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeec
Q 011215 272 RIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351 (491)
Q Consensus 272 ~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~ 351 (491)
...+||||+|||.+||+.|++..... ..+.|.++|.++++.+++|..|. .+++++++
T Consensus 390 g~~~QQDA~EFLlfLL~kirk~~~S~--~~~~It~lf~Fe~e~rlsC~~C~---------------------~v~ySye~ 446 (749)
T COG5207 390 GKFAQQDAHEFLLFLLEKIRKGERSY--LIPPITSLFEFEVERRLSCSGCM---------------------DVSYSYES 446 (749)
T ss_pred hhhhhhhHHHHHHHHHHHHhhccchh--cCCCcchhhhhhhcceecccccc---------------------cccccccc
Confidence 99999999999999999999865433 34678999999999999999997 78899999
Q ss_pred ceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc-----eeeccccceEEEEEeccCCceeEEEEeeEeecCce
Q 011215 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV-----TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFF 426 (491)
Q Consensus 352 f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~-----~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~ 426 (491)
..++.+++.. +...+++..+++.|+.... ..|+.+..|.++..|++||+|||||..||+..+|.
T Consensus 447 ~~~i~i~le~-----------n~E~~di~~~v~a~f~pdtiE~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~ 515 (749)
T COG5207 447 MLMICIFLEG-----------NDEPQDIRKSVEAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYK 515 (749)
T ss_pred eEEEEeeccc-----------CcchhhHHHHHHheECccceeeehhhhcCcccccccchhhccCceeEEecceeecccee
Confidence 9888887753 2345689999999887653 34788888999999999999999999999999999
Q ss_pred eecCCeeEeccCc-cccccCCCCC
Q 011215 427 VEKNPTLVNFPVK-NLELKDYIPL 449 (491)
Q Consensus 427 ~~K~~~~V~FP~~-~LDL~~y~~~ 449 (491)
.+|+..++..... -++++.|++.
T Consensus 516 v~kls~pi~~~~D~m~~~~s~msk 539 (749)
T COG5207 516 VEKLSDPIEMRSDDMIKLGSFMSK 539 (749)
T ss_pred ehhccCceEEccccccchhhHhhc
Confidence 9998887776532 2788888765
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-50 Score=408.88 Aligned_cols=274 Identities=24% Similarity=0.391 Sum_probs=226.0
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-----CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhc
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-----RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-----~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s 267 (491)
||.|+|||||||||||+|+|+|+||++++...+. .....++.++|++|+..+|.... ...++|..|+.+++..
T Consensus 2 Gl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~~~~~- 79 (328)
T cd02660 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGD-RSPYGPINLLYLSWKH- 79 (328)
T ss_pred CccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHhh-
Confidence 9999999999999999999999999999864322 12345899999999999964432 4689999999999988
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhhcCC-------CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCC
Q 011215 268 KKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDH 340 (491)
Q Consensus 268 ~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~-------~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~ 340 (491)
.+.|.++.||||+|||.+||+.|++++.... ...++|.++|+|.+.++++|..|+
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~------------------ 141 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCG------------------ 141 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCC------------------
Confidence 6889999999999999999999999886542 235789999999999999999997
Q ss_pred CCCceeEEeecceeeeecCCCCCCccccc-ccccCCCCCHHHHHhhccccc--------ceeeccccceEEEEEeccCCc
Q 011215 341 DNITTETSRMPFLMLGLDLPPPPLFKDVM-EKNIIPQVPLFNILKKFDGET--------VTEVVRPHVARMRYRVTRLPK 411 (491)
Q Consensus 341 ~~~~~s~~~e~f~~LsLdlp~~~~~kd~~-~~~~~p~vsL~~~L~~f~~~~--------~~ec~~~~~a~k~~~i~~lP~ 411 (491)
..+.+.++|+.|+|+||......... .....++.+|++||++|...+ |..|+....+.|+.+|.+||+
T Consensus 142 ---~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 218 (328)
T cd02660 142 ---GVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPP 218 (328)
T ss_pred ---CccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCc
Confidence 66777999999999999764322111 112345689999999988654 556777778899999999999
Q ss_pred eeEEEEeeEeecC-ceeecCCeeEeccCccccccCCCCCCCC----CCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeC
Q 011215 412 YMILHMRRFTKNN-FFVEKNPTLVNFPVKNLELKDYIPLPTP----KENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRK 486 (491)
Q Consensus 412 ~LiihLkRF~~~~-~~~~K~~~~V~FP~~~LDL~~y~~~~~~----~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~ 486 (491)
||+|||+||.++. +...|+.+.|.||.. |||++|+..... ........+|+|+|||+|.|+.++|||++|+|..
T Consensus 219 ~Lii~lkRf~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~ 297 (328)
T cd02660 219 VLCFQLKRFEHSLNKTSRKIDTYVQFPLE-LNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG 297 (328)
T ss_pred eeEEEEEeEEecCCCCCcCCCcEEeCCCE-echhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC
Confidence 9999999999886 677899999999985 999999984210 1123345789999999999999999999999996
Q ss_pred CCCCC
Q 011215 487 SEELW 491 (491)
Q Consensus 487 ~~~~W 491 (491)
+++|
T Consensus 298 -~~~W 301 (328)
T cd02660 298 -DGQW 301 (328)
T ss_pred -CCcE
Confidence 4888
No 6
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.5e-50 Score=404.19 Aligned_cols=258 Identities=21% Similarity=0.297 Sum_probs=218.2
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCC-----CCCCCChHHHHHHHHHHHHHcCCC------------CCCCCC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARN------------FKGQVS 255 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~------------fk~~vs 255 (491)
||.|+|||||||||||+|+|+|+||++|+...+ ...+..++.++|++|+..||+++. ++.+|+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 999999999999999999999999999985221 112345799999999999998643 346799
Q ss_pred HHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCC
Q 011215 256 PHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD 335 (491)
Q Consensus 256 P~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~ 335 (491)
|..|+.+++.. .+.|..+.||||+|||.+||+.|++++... ....+.++|+|.+..+++|..|+
T Consensus 81 p~~~~~~l~~~-~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--~~~~~~~~f~~~~~~~i~C~~C~------------- 144 (311)
T cd02658 81 PSMFKALIGKG-HPEFSTMRQQDALEFLLHLIDKLDRESFKN--LGLNPNDLFKFMIEDRLECLSCK------------- 144 (311)
T ss_pred cHHHHHHHhcc-ChhhcccccccHHHHHHHHHHHHHHhhccc--ccCCchhheEEEeeEEEEcCCCC-------------
Confidence 99999999987 799999999999999999999999987532 23568899999999999999997
Q ss_pred CCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc-----ceeeccccceEEEEEeccCC
Q 011215 336 GGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET-----VTEVVRPHVARMRYRVTRLP 410 (491)
Q Consensus 336 v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~-----~~ec~~~~~a~k~~~i~~lP 410 (491)
.++.+.++|.+|+|+||.......+....+.+.++|++||+.|...+ |..|+..+.++|+.+|.+||
T Consensus 145 --------~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP 216 (311)
T cd02658 145 --------KVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFP 216 (311)
T ss_pred --------CEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCC
Confidence 77888999999999999876544444445567889999999988765 33477778899999999999
Q ss_pred ceeEEEEeeEee-cCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEecc-CCCCcEEEEEEeC--
Q 011215 411 KYMILHMRRFTK-NNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQRK-- 486 (491)
Q Consensus 411 ~~LiihLkRF~~-~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~-~~~GHY~~~vr~~-- 486 (491)
+||+|||+||.+ .+|...|+.+.|.||.. | ...+|+|+|||+|.|+ +++|||++|+|..
T Consensus 217 ~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~-l----------------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~ 279 (311)
T cd02658 217 DYLVINMKRFQLLENWVPKKLDVPIDVPEE-L----------------GPGKYELIAFISHKGTSVHSGHYVAHIKKEID 279 (311)
T ss_pred ceEEEEeEEEEecCCCceEeeccccccCCc-C----------------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCC
Confidence 999999999998 46788999999999964 4 1246999999999995 8999999999996
Q ss_pred CCCCC
Q 011215 487 SEELW 491 (491)
Q Consensus 487 ~~~~W 491 (491)
.+++|
T Consensus 280 ~~~~W 284 (311)
T cd02658 280 GEGKW 284 (311)
T ss_pred CCCCE
Confidence 34889
No 7
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-50 Score=403.51 Aligned_cols=237 Identities=26% Similarity=0.407 Sum_probs=205.6
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~ 272 (491)
||.|+|||||||||||+|+| .+++++|+.||++||.+......|+|..|+++++.. .+.|.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~-~~~f~ 61 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRE-NELFD 61 (300)
T ss_pred CccCCCcceehhHHHHHhhh------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhh-cCCCC
Confidence 99999999999999999998 568899999999999876555689999999999987 78999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcC----------------CCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCC
Q 011215 273 IGVQSNPVEFMSWLLNTLHSDLRNT----------------KKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDG 336 (491)
Q Consensus 273 ~~~QqDA~EFL~~LLn~L~~~l~~~----------------~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v 336 (491)
.++||||+|||.+||+.||++++.. ....++|.++|+|++.++++|..|+
T Consensus 62 ~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~-------------- 127 (300)
T cd02663 62 NYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCE-------------- 127 (300)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCC--------------
Confidence 9999999999999999999998632 1245778999999999999999997
Q ss_pred CCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEec
Q 011215 337 GDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVT 407 (491)
Q Consensus 337 ~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~ 407 (491)
..+.+.++|+.|+|+||. ..+|++||+.|...+ |..|+..+.++|+.+|.
T Consensus 128 -------~~s~~~e~f~~Lsl~i~~--------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~ 186 (300)
T cd02663 128 -------TVSSRDETFLDLSIDVEQ--------------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIK 186 (300)
T ss_pred -------CCccccceeEEeccCCCC--------------cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEec
Confidence 677889999999999986 368999999998655 33466777889999999
Q ss_pred cCCceeEEEEeeEeecCc--eeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEecc-CCCCcEEEEEE
Q 011215 408 RLPKYMILHMRRFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQ 484 (491)
Q Consensus 408 ~lP~~LiihLkRF~~~~~--~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~-~~~GHY~~~vr 484 (491)
++|+||+|||+||.++.. ...|+.+.|.||+. |+|.++.... ......|+|+|||+|.|+ +++|||++|+|
T Consensus 187 ~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~-L~~~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k 260 (300)
T cd02663 187 KLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLE-LRLFNTTDDA-----ENPDRLYELVAVVVHIGGGPNHGHYVSIVK 260 (300)
T ss_pred cCCceeEEEEEeEEeecccCCceecCceEecCcE-Eecccccccc-----CCCCeEEEEEEEEEEecCCCCCCceEEEEE
Confidence 999999999999998753 47899999999985 9998875321 122367999999999995 89999999999
Q ss_pred eCCCCCC
Q 011215 485 RKSEELW 491 (491)
Q Consensus 485 ~~~~~~W 491 (491)
+ +++|
T Consensus 261 ~--~~~W 265 (300)
T cd02663 261 S--HGGW 265 (300)
T ss_pred C--CCcE
Confidence 9 7889
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-49 Score=405.27 Aligned_cols=250 Identities=21% Similarity=0.319 Sum_probs=212.2
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCC------------CCChHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH------------CKSPLVHRFGDLTRKIWHARNFKGQVSPHEFL 260 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~------------~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll 260 (491)
||.|+|||||||||||+|+|+|+||++++....... ...+++++|+.||..||.+. ...|+|..|+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHH
Confidence 999999999999999999999999999985321110 13579999999999999886 4689999999
Q ss_pred HHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcC--CCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCC
Q 011215 261 QAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT--KKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGD 338 (491)
Q Consensus 261 ~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~--~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~ 338 (491)
.++. |..++||||+|||.+||+.|+.++... ....++|.++|.|++..+++|..|+
T Consensus 79 ~~l~------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~---------------- 136 (324)
T cd02668 79 KALG------LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCG---------------- 136 (324)
T ss_pred HHhC------CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCC----------------
Confidence 9873 567899999999999999999998743 2245789999999999999999997
Q ss_pred CCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccC
Q 011215 339 DHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRL 409 (491)
Q Consensus 339 ~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~l 409 (491)
..+.+.++|+.|+|+||. ..+|+++|+.|...+ |..|+.+..+.|+.+|.+|
T Consensus 137 -----~~s~~~e~f~~l~l~i~~--------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~l 197 (324)
T cd02668 137 -----RESSLPSKFYELELQLKG--------------HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTL 197 (324)
T ss_pred -----CccccccccEEEEEEecc--------------cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCC
Confidence 567788999999999985 258999999887643 3456677788999999999
Q ss_pred CceeEEEEeeEeecC--ceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEecc-CCCCcEEEEEEeC
Q 011215 410 PKYMILHMRRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQRK 486 (491)
Q Consensus 410 P~~LiihLkRF~~~~--~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~-~~~GHY~~~vr~~ 486 (491)
|+||+|||+||.++. +...|+.+.|.||.. |||++|+.... ....+|+|+|||+|.|+ +++|||++|+|+.
T Consensus 198 P~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~-Ldl~~~~~~~~-----~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~ 271 (324)
T cd02668 198 PPTLNFQLLRFVFDRKTGAKKKLNASISFPEI-LDMGEYLAESD-----EGSYVYELSGVLIHQGVSAYSGHYIAHIKDE 271 (324)
T ss_pred CCeEEEEEEcceeecccCcceeCCcEEECCCe-Eechhhccccc-----CCCcEEEEEEEEEEcCCCCCCEeeEEEEECC
Confidence 999999999999763 568999999999975 99999986321 22467999999999995 8999999999997
Q ss_pred CCCCC
Q 011215 487 SEELW 491 (491)
Q Consensus 487 ~~~~W 491 (491)
.+++|
T Consensus 272 ~~~~W 276 (324)
T cd02668 272 QTGEW 276 (324)
T ss_pred CCCcE
Confidence 67899
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-49 Score=398.66 Aligned_cols=254 Identities=28% Similarity=0.329 Sum_probs=214.7
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC----CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcc
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY----RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~----~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~ 268 (491)
||.|+|||||||||||+|+|+|+||++++..... .....+++++|++|+..|+.+. ..++|.+|+..++.. .
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~i~p~~~~~~l~~~-~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ---EPVPPIEFLQLLRMA-F 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC---CcCCcHHHHHHHHHH-C
Confidence 9999999999999999999999999999864321 1134689999999999999875 479999999999988 6
Q ss_pred cccC------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 011215 269 KRFR------IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDN 342 (491)
Q Consensus 269 ~~F~------~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~ 342 (491)
+.|. .++||||+|||.+||+.|++++++.....++|.++|+|++.+.++|..|+.
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~------------------- 137 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTESPD------------------- 137 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCCCCC-------------------
Confidence 8884 459999999999999999999875444567899999999999999999961
Q ss_pred CceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc----eeeccccceEEEEEeccCCceeEEEEe
Q 011215 343 ITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV----TEVVRPHVARMRYRVTRLPKYMILHMR 418 (491)
Q Consensus 343 ~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~----~ec~~~~~a~k~~~i~~lP~~LiihLk 418 (491)
..+.+.++|++|+|+||... ...+|+++|..+..++. ..|+....+.|+.+|.++|+||+|||+
T Consensus 138 -~~~~~~e~f~~Lsl~i~~~~-----------~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~Lk 205 (305)
T cd02657 138 -EEEVSTESEYKLQCHISITT-----------EVNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFV 205 (305)
T ss_pred -CCccccccceEEEeecCCCc-----------ccccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEE
Confidence 46778999999999998642 12579999988776542 335556667889999999999999999
Q ss_pred eEeecCc--eeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEec-cCCCCcEEEEEEeCCCCCC
Q 011215 419 RFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 419 RF~~~~~--~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~~~~~~W 491 (491)
||.++.. ...|+.+.|.||.. |||.+|+.. ..+|+|+|||+|.| ++++|||++|+|.+.+++|
T Consensus 206 RF~~~~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~---------~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W 271 (305)
T cd02657 206 RFFWKRDIQKKAKILRKVKFPFE-LDLYELCTP---------SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKW 271 (305)
T ss_pred CCccccccCceeecCcEEECCce-EecccccCC---------CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeE
Confidence 9997653 57799999999985 999999862 25699999999999 5899999999999765899
No 10
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-48 Score=390.80 Aligned_cols=220 Identities=25% Similarity=0.405 Sum_probs=190.4
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~ 272 (491)
||.|+|||||||||||+|+|+|+||++|+. +|.+|+..++.. ++.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~-~~~f~ 47 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRK-APQFK 47 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHh-hHhhc
Confidence 999999999999999999999999999983 889999999887 78999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecc
Q 011215 273 IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPF 352 (491)
Q Consensus 273 ~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f 352 (491)
.++||||+|||.+||+.|+ ++|.++|+|++..+++|..|+ ..+.+.++|
T Consensus 48 ~~~QqDA~Efl~~lld~l~----------~~i~~~F~G~~~~~i~C~~C~---------------------~~s~~~E~f 96 (279)
T cd02667 48 GYQQQDSHELLRYLLDGLR----------TFIDSIFGGELTSTIMCESCG---------------------TVSLVYEPF 96 (279)
T ss_pred CCchhhHHHHHHHHHHHHH----------HhhhhhcceEEEEEEEcCCCC---------------------CEeCccccc
Confidence 9999999999999999999 368899999999999999997 778889999
Q ss_pred eeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc------eeeccccceEEEEEeccCCceeEEEEeeEeecCc-
Q 011215 353 LMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNF- 425 (491)
Q Consensus 353 ~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~------~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~- 425 (491)
+.|+|++|.. ....++|++||+.|...+. ..|..+..|+|+.+|.++|+||+|||+||.++..
T Consensus 97 ~~L~Lp~~~~----------~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~a~k~~~i~~~P~~Lii~LkRF~~~~~~ 166 (279)
T cd02667 97 LDLSLPRSDE----------IKSECSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSA 166 (279)
T ss_pred eEEecCCCcc----------cCCCCCHHHHHHhhcCeeEecCCCcccCCccCceeeEeEhhhCCCeEEEEEeccccCccc
Confidence 9999987642 2346899999999987654 3466666689999999999999999999998753
Q ss_pred eeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCC
Q 011215 426 FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKS 487 (491)
Q Consensus 426 ~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~ 487 (491)
...|+.+.|.||.. |||++|+.............+|+|+|||+|.|+.++|||++|+|...
T Consensus 167 ~~~Ki~~~v~fP~~-Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~ 227 (279)
T cd02667 167 NLRKVSRHVSFPEI-LDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRP 227 (279)
T ss_pred CceecCceEeCCCc-cchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCc
Confidence 67899999999985 99999997532112223346799999999999999999999999854
No 11
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.3e-47 Score=386.41 Aligned_cols=252 Identities=19% Similarity=0.255 Sum_probs=201.2
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhccc
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~ 269 (491)
.++||.|+|||||||||||+|+|+|+||+.++....... .....+.+..+++++|+.. ...++|..|+++++.. ++
T Consensus 23 ~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~-~~~~~q~~~~~l~~~~~~~--~~~~~P~~~~~~l~~~-~~ 98 (332)
T cd02671 23 PFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS-SVEQLQSSFLLNPEKYNDE--LANQAPRRLLNALREV-NP 98 (332)
T ss_pred CCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC-cHHHHHHHHHHHHHHHhhc--ccccCHHHHHHHHHHh-cc
Confidence 356999999999999999999999999999874321111 1112233445566777654 2457899999999988 79
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEe
Q 011215 270 RFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSR 349 (491)
Q Consensus 270 ~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~ 349 (491)
.|..+.||||+|||.+||+.|+. +|.++|+|++..+++|..|+ ..+.+.
T Consensus 99 ~f~~~~QQDA~EFl~~LLd~L~~----------~i~~~F~g~~~~~~~C~~C~---------------------~~s~~~ 147 (332)
T cd02671 99 MYEGYLQHDAQEVLQCILGNIQE----------LVEKDFQGQLVLRTRCLECE---------------------TFTERR 147 (332)
T ss_pred ccCCccccCHHHHHHHHHHHHHH----------HHHhhhceEEEEEEEeCCCC---------------------Ceecee
Confidence 99999999999999999999995 57899999999999999997 788899
Q ss_pred ecceeeeecCCCCCCcccccccc-----cCCCCCHHHHHhhcccccc---------eeeccccceEEEEEeccCCceeEE
Q 011215 350 MPFLMLGLDLPPPPLFKDVMEKN-----IIPQVPLFNILKKFDGETV---------TEVVRPHVARMRYRVTRLPKYMIL 415 (491)
Q Consensus 350 e~f~~LsLdlp~~~~~kd~~~~~-----~~p~vsL~~~L~~f~~~~~---------~ec~~~~~a~k~~~i~~lP~~Lii 415 (491)
++|+.|+|+||.....+...... ..+..+|.+||+.|...+. ..|+..+.|+|+..|.++|+||+|
T Consensus 148 E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i 227 (332)
T cd02671 148 EDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITI 227 (332)
T ss_pred cccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEE
Confidence 99999999999764322111111 1234699999999886553 346677889999999999999999
Q ss_pred EEeeEeecC------ceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEec-cCCCCcEEEEEE
Q 011215 416 HMRRFTKNN------FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQ 484 (491)
Q Consensus 416 hLkRF~~~~------~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr 484 (491)
||+||.++. ....|+.+.|.||+. |||.+|...+ ....|+|+|||+|.| ++++|||++|||
T Consensus 228 ~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~-L~~~~~~~~~-------~~~~Y~L~~VI~H~G~~~~~GHY~a~vr 295 (332)
T cd02671 228 HLKCFAANGSEFDCYGGLSKVNTPLLTPLK-LSLEEWSTKP-------KNDVYRLFAVVMHSGATISSGHYTAYVR 295 (332)
T ss_pred EeeeeccccccccccCCceecCccccCccc-cccccccCCC-------CCCeEEEEEEEEEcCCCCCCCeEEEEEE
Confidence 999999763 246899999999986 9999876522 236799999999999 589999999998
No 12
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.3e-46 Score=380.41 Aligned_cols=241 Identities=24% Similarity=0.358 Sum_probs=196.3
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHhhcccc
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHE-FLQAVMKASKKR 270 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~-ll~~i~~~s~~~ 270 (491)
||.|+||||||||+||+|+++|+||++++..... ......+..+|..|+..|.... ...++|.. |+...+ .+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~~~~~~~~l~~~~---~~~ 75 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQ--RRAEAPPDYFLEASR---PPW 75 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcC--CcccCCHHHHHHHhc---ccc
Confidence 9999999999999999999999999999964321 1234567888988888776543 24566665 776653 467
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEee
Q 011215 271 FRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM 350 (491)
Q Consensus 271 F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e 350 (491)
|..+.||||+|||.+||+.|+ ++|.++|.|++..+++|..|+ ..+.+.+
T Consensus 76 f~~~~QqDa~EFl~~lLd~l~----------~~i~~~F~G~~~~~i~C~~C~---------------------~~s~~~e 124 (327)
T cd02664 76 FTPGSQQDCSEYLRYLLDRLH----------TLIEKMFGGKLSTTIRCLNCN---------------------STSARTE 124 (327)
T ss_pred cCCCCcCCHHHHHHHHHHHHH----------HHHHhhCcEEeEeEEEcCCCC---------------------CEecccc
Confidence 999999999999999999999 368999999999999999997 7788999
Q ss_pred cceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccCCceeEEEEeeEe
Q 011215 351 PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFT 421 (491)
Q Consensus 351 ~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~ 421 (491)
+|..|+|+|| +|.++|+.|...+ |..|+..+.+.|+.+|.++|+||+|||+||.
T Consensus 125 ~f~~l~L~i~-----------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~ 187 (327)
T cd02664 125 RFRDLDLSFP-----------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFS 187 (327)
T ss_pred cceeeecCCC-----------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeE
Confidence 9999999987 5788998887533 3456677789999999999999999999999
Q ss_pred ecC--ceeecCCeeEeccCccccccCCCCCCCC--------------CCCCCCCCceEEEEEEEEecc-CCCCcEEEEEE
Q 011215 422 KNN--FFVEKNPTLVNFPVKNLELKDYIPLPTP--------------KENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQ 484 (491)
Q Consensus 422 ~~~--~~~~K~~~~V~FP~~~LDL~~y~~~~~~--------------~~~~~~~~~Y~L~avI~H~G~-~~~GHY~~~vr 484 (491)
++. +...|+.+.|.||.. |||..|+..... ........+|+|+|||+|.|+ +++|||+||+|
T Consensus 188 ~~~~~~~~~Ki~~~v~fp~~-ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r 266 (327)
T cd02664 188 YDQKTHVREKIMDNVSINEV-LSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYAR 266 (327)
T ss_pred EccccCcceecCceEecCCE-EecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEe
Confidence 764 457899999999985 999998742110 011123468999999999995 89999999999
Q ss_pred eCC
Q 011215 485 RKS 487 (491)
Q Consensus 485 ~~~ 487 (491)
...
T Consensus 267 ~~~ 269 (327)
T cd02664 267 DQT 269 (327)
T ss_pred cCC
Confidence 864
No 13
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-47 Score=390.09 Aligned_cols=252 Identities=25% Similarity=0.410 Sum_probs=218.9
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCC---CCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhccc
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH---CKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~---~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~ 269 (491)
||.|+|||||+|||||||.++|||.+|||...+... ...|+.|+|...+....... ...|+|..|+..+... ..
T Consensus 110 GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~--g~pisP~~i~s~L~~I-~~ 186 (545)
T KOG1865|consen 110 GLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNP--GHPISPSQILSNLRNI-SA 186 (545)
T ss_pred ceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCC--CCccChHHHHHhhhhh-cc
Confidence 999999999999999999999999999997554433 34689999999887776655 2489999999999998 68
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhh-cCC------CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 011215 270 RFRIGVQSNPVEFMSWLLNTLHSDLR-NTK------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDN 342 (491)
Q Consensus 270 ~F~~~~QqDA~EFL~~LLn~L~~~l~-~~~------~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~ 342 (491)
.|..++|.||||||+++++.|+...- +.+ ...++|+.+|+|.|++.++|..|+
T Consensus 187 ~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~-------------------- 246 (545)
T KOG1865|consen 187 HFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCK-------------------- 246 (545)
T ss_pred cccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCC--------------------
Confidence 99999999999999999999999863 211 256789999999999999999997
Q ss_pred CceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccCCcee
Q 011215 343 ITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYM 413 (491)
Q Consensus 343 ~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~lP~~L 413 (491)
.++.++|+.++|+|+|-. ..+|.++|+.|+..+ |..|+.+..|.|++.|.++|+||
T Consensus 247 -~vS~tyE~~~dltvei~d--------------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVL 311 (545)
T KOG1865|consen 247 -GVSDTYEPYLDLTLEIQD--------------ASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVL 311 (545)
T ss_pred -CcccccccccceEEEecc--------------chhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceE
Confidence 899999999999999873 258999999887654 34578888999999999999999
Q ss_pred EEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEec-cCCCCcEEEEEEeCCCCCC
Q 011215 414 ILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 414 iihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~~~~~~W 491 (491)
+||||||+. +...||...|.||+. |||.||++.+. ....+|.|+|||||.| +..+|||+||||.. .|.|
T Consensus 312 Ti~LKRF~~--~~~gKI~K~I~fPE~-LDl~PyMS~~~-----e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~W 381 (545)
T KOG1865|consen 312 TLHLKRFSN--GTGGKISKPVSFPET-LDLQPYMSQPN-----EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQW 381 (545)
T ss_pred EEeeehhcc--CcccccccccCCccc-ccccccccCCC-----CCCceEEEEEEEEeccccccCCceEEEEEcC-CCce
Confidence 999999985 677899999999985 99999999432 2246799999999999 78999999999997 7899
No 14
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-45 Score=369.37 Aligned_cols=253 Identities=25% Similarity=0.410 Sum_probs=212.4
Q ss_pred cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC---CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcc
Q 011215 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY---RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (491)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~---~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~ 268 (491)
+||.|+|||||||||||+|+|+|+||++++...+. .....++.++|..++..++..+ +..++|..|+.++... .
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~p~~~~~~l~~~-~ 78 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASS--GPGSAPRIFSSNLKQI-S 78 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCC--CCccChHHHHHHHHHH-H
Confidence 59999999999999999999999999999853222 1223578999999998887655 3679999999999887 7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhhcCC----------CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCC
Q 011215 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGD 338 (491)
Q Consensus 269 ~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~----------~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~ 338 (491)
+.|..+.||||+|||.+||+.|+.++.... ...++|.++|+|++...++|..|+
T Consensus 79 ~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~---------------- 142 (304)
T cd02661 79 KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCK---------------- 142 (304)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCC----------------
Confidence 889999999999999999999998864321 235789999999999999999997
Q ss_pred CCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccC
Q 011215 339 DHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRL 409 (491)
Q Consensus 339 ~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~l 409 (491)
..+.+.++|+.|+|++|.. .+|.++|+.|+..+ |..|+....+.++.+|.++
T Consensus 143 -----~~s~~~e~~~~l~l~i~~~--------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~ 203 (304)
T cd02661 143 -----HVSNTYDPFLDLSLDIKGA--------------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRA 203 (304)
T ss_pred -----CCcCccccceeeeeecCCC--------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecC
Confidence 5677789999999999863 47899998887643 3446666678889999999
Q ss_pred CceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccC-CCCcEEEEEEeCCC
Q 011215 410 PKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKSE 488 (491)
Q Consensus 410 P~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~-~~GHY~~~vr~~~~ 488 (491)
|++|+|||+||.++ ...|+.+.|.||.. |||.+|+..+ .....+|+|+|||+|.|+. ++|||++|+|++ +
T Consensus 204 P~iL~i~l~Rf~~~--~~~Ki~~~v~f~~~-L~l~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~ 274 (304)
T cd02661 204 PNVLTIHLKRFSNF--RGGKINKQISFPET-LDLSPYMSQP-----NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSS-N 274 (304)
T ss_pred CcEEEEEEeccccC--CccccCCeEecCCe-echhhccccC-----CCCCceeeEEEEEEECCCCCCCcCCEEEEECC-C
Confidence 99999999999977 56899999999985 9999998742 1234679999999999975 999999999985 6
Q ss_pred CCC
Q 011215 489 ELW 491 (491)
Q Consensus 489 ~~W 491 (491)
++|
T Consensus 275 ~~W 277 (304)
T cd02661 275 GKW 277 (304)
T ss_pred CCE
Confidence 888
No 15
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-45 Score=374.46 Aligned_cols=261 Identities=18% Similarity=0.234 Sum_probs=211.7
Q ss_pred hcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCC--CCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcc
Q 011215 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP--ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (491)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~--~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~ 268 (491)
++||.|+|||||||||||+|+++|+||++++.. ........++.+.|+.||..|+.... ..+.|..+. .+.....
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~--~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSES--PVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCc--cccCcchhh-eeccCCC
Confidence 679999999999999999999999999999963 11122356799999999999997653 345555444 2222224
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEE
Q 011215 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (491)
Q Consensus 269 ~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~ 348 (491)
..|..+.||||+|||.+||+.|+.++.... ..++|.++|.|.+...++|..|+ ..+..
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~-~~~~i~~lF~g~~~~~~~C~~C~---------------------~~s~~ 136 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGTG-QEGLIKNLFGGKLVNYIICKECP---------------------HESER 136 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccCc-ccchhhhhCceEEEeEEEecCCC---------------------ceecc
Confidence 568899999999999999999999886433 34689999999999999999996 67888
Q ss_pred eecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccCCceeEEEEee
Q 011215 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRR 419 (491)
Q Consensus 349 ~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~lP~~LiihLkR 419 (491)
.++|+.|+|++|+. .+|+++|+.|...+ |..|+....+.++.+|.++|+||+|||+|
T Consensus 137 ~e~f~~l~l~i~~~--------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~R 202 (334)
T cd02659 137 EEYFLDLQVAVKGK--------------KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKR 202 (334)
T ss_pred cccceEEEEEcCCC--------------CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeee
Confidence 99999999999852 47899999887654 33456666788999999999999999999
Q ss_pred Eeec--CceeecCCeeEeccCccccccCCCCCCCCC------CCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 420 FTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPK------ENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 420 F~~~--~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~------~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
|.++ ++...|+.+.|.||.. |||.+|+...... .......+|+|+|||+|.|+.++|||++|+|+..+++|
T Consensus 203 f~~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W 281 (334)
T cd02659 203 FEFDFETMMRIKINDRFEFPLE-LDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKW 281 (334)
T ss_pred eEEccccCcceeCCceEeCCce-ecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCce
Confidence 9975 3467899999999985 9999998754211 12233567999999999999999999999999767899
No 16
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=380.51 Aligned_cols=270 Identities=27% Similarity=0.443 Sum_probs=230.6
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCC--------CCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~--------~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~ 264 (491)
||.|+||||||||.||||.|++.||+||+... ++....+.++.+++.|+.+++.++. ..++|..|+..|+
T Consensus 267 GL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~--haf~Ps~fK~tIG 344 (823)
T COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNL--HAFTPSGFKKTIG 344 (823)
T ss_pred ceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccc--cccChHHHHHHHh
Confidence 99999999999999999999999999999521 2223346789999999999998885 7899999999999
Q ss_pred hhcccccCCCCCCCHHHHHHHHHHHHHHhhhcC-------C------------------------CCCCCcccCceeEEE
Q 011215 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-------K------------------------KNTSIIYECFQGELE 313 (491)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~-------~------------------------~~~sii~~~F~G~l~ 313 (491)
.. +..|+++.|||.+||+.+||+.||+++++. + ++.|+|.++|+|..+
T Consensus 345 ~f-n~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK 423 (823)
T COG5560 345 SF-NEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK 423 (823)
T ss_pred hh-HHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 99 799999999999999999999999999831 1 278999999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcc---------------------------
Q 011215 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFK--------------------------- 366 (491)
Q Consensus 314 ~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~k--------------------------- 366 (491)
+++.|+.|+ .++++++||++|+||||.....+
T Consensus 424 STL~Cp~C~---------------------~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~ 482 (823)
T COG5560 424 STLTCPGCG---------------------SVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRG 482 (823)
T ss_pred ceeeccCcC---------------------ceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHH
Confidence 999999997 89999999999999998643200
Q ss_pred -----------cc-------------------------------------------------------------------
Q 011215 367 -----------DV------------------------------------------------------------------- 368 (491)
Q Consensus 367 -----------d~------------------------------------------------------------------- 368 (491)
.+
T Consensus 483 lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~p 562 (823)
T COG5560 483 LKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDP 562 (823)
T ss_pred HHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCc
Confidence 00
Q ss_pred ---------------c-------------c-----------------------------------c--------c-----
Q 011215 369 ---------------M-------------E-----------------------------------K--------N----- 372 (491)
Q Consensus 369 ---------------~-------------~-----------------------------------~--------~----- 372 (491)
+ + + +
T Consensus 563 flqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~v 642 (823)
T COG5560 563 FLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAV 642 (823)
T ss_pred ceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcce
Confidence 0 0 0 0
Q ss_pred --------------------------c--CCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccCCceeEE
Q 011215 373 --------------------------I--IPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMIL 415 (491)
Q Consensus 373 --------------------------~--~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~lP~~Lii 415 (491)
. .+.+||++||..|.+++ |..|+..+.|+||+.|+++|.||||
T Consensus 643 vi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLii 722 (823)
T COG5560 643 VISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILII 722 (823)
T ss_pred EEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheee
Confidence 0 15689999999998766 4457778889999999999999999
Q ss_pred EEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 416 HMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 416 hLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
|||||+....++.|+.+.|.||+..|||+.+...-. .+ ...|+|+||=.|+|.+.+|||+||+|+.++++|
T Consensus 723 hLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~----~p-~liydlyavDNHygglsgGHYtAyarn~~n~~w 793 (823)
T COG5560 723 HLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD----DP-RLIYDLYAVDNHYGGLSGGHYTAYARNFANNGW 793 (823)
T ss_pred ehhhhhhcccchhhhhhhhccccccccccceEEeec----Cc-ceEEEeeeccccccccCCcceeeeeecccCCce
Confidence 999999888889999999999999999998876321 12 256999999999999999999999999998898
No 17
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-42 Score=364.36 Aligned_cols=329 Identities=26% Similarity=0.403 Sum_probs=270.3
Q ss_pred CceEE-ecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCCchhhhhh------------------
Q 011215 131 LNVYA-CLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRH------------------ 191 (491)
Q Consensus 131 ~nl~~-CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~~L~di~~------------------ 191 (491)
.-+++ |+.|+ ++|+..++|-..|+...+|-+.+.+.++-.||++|.+.|++..+.++..
T Consensus 54 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (492)
T KOG1867|consen 54 IRLAVPCLICD--SLGCLSNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLT 131 (492)
T ss_pred hhhcccceech--hcccccccccccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhh
Confidence 34455 78888 6777788999999999999999999999999999999998754322211
Q ss_pred ------------------------------cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC---CCC-CChHHHHH
Q 011215 192 ------------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY---RHC-KSPLVHRF 237 (491)
Q Consensus 192 ------------------------------~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~---~~~-~~~l~~~l 237 (491)
.||+|+|+||+||+|||+|.|.+..++.++...+. ... ..++.+.+
T Consensus 132 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~ 211 (492)
T KOG1867|consen 132 HLAEATVCQQTLLKENPKDRLVLSTTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDL 211 (492)
T ss_pred hhhhhhccchhcccCCcccccccceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhh
Confidence 19999999999999999999999999998854332 122 45899999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcC----------CCCCCCcccC
Q 011215 238 GDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT----------KKNTSIIYEC 307 (491)
Q Consensus 238 ~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~----------~~~~sii~~~ 307 (491)
..+++.+|++.+ ...++|..++..+|+. .+.|.+++||||+||+..+++.+|.+.+.. +...+++..+
T Consensus 212 ~~~~~~~~s~~~-~~~~sp~~~l~~~~k~-~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~ 289 (492)
T KOG1867|consen 212 DRLFQALYSGHN-RTPYSPFELLNLVWKH-SPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTI 289 (492)
T ss_pred hhhhhHhhcCCC-CCCcChHHHHHHHHHh-CcccccccccchHHHHHHhcccccccccccccccccccCCccccccccee
Confidence 999999999985 5799999999999999 699999999999999999999999987211 1247899999
Q ss_pred ceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcc
Q 011215 308 FQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387 (491)
Q Consensus 308 F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~ 387 (491)
|.|.|...++|..|+ ..+..+++|++|+|+||+.-..... ..+..++.+|+..|+
T Consensus 290 F~G~L~~~v~c~~c~---------------------~~S~~~dpf~disL~i~~~~~~~~~----~~~~~~~~~cl~~~~ 344 (492)
T KOG1867|consen 290 FSGTLQSDVTCQTCG---------------------SKSTTYDPFMDISLDIPDQFTSSSV----RSPELTLLDCLDRFT 344 (492)
T ss_pred ecceeccceeehhhc---------------------ceeeeccCccceeeecchhccCccc----ccchhhhhhhhhhhh
Confidence 999999999999997 5669999999999999975321111 112456888888776
Q ss_pred cc---------cceeeccccceEEEEEeccCCceeEEEEeeEeecCceee-cCCeeEeccCccccccCCCCCCCCCCCCC
Q 011215 388 GE---------TVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVE-KNPTLVNFPVKNLELKDYIPLPTPKENEK 457 (491)
Q Consensus 388 ~~---------~~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~-K~~~~V~FP~~~LDL~~y~~~~~~~~~~~ 457 (491)
.. ++..|+..+.++|+..|.++|.+|.+|++||.+...... |+...|.||.. |+|.+|+..+..+..+.
T Consensus 345 ~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~-l~m~p~~~~~~~~~~~~ 423 (492)
T KOG1867|consen 345 RSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVL-LNMKPYCSSEKLKSQDN 423 (492)
T ss_pred hhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchh-hcCCccccccccccCCC
Confidence 43 345677788899999999999999999999998765433 99999999986 99999998644444444
Q ss_pred CCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 458 LRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 458 ~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
....|+|.|||+|.|+.++|||+||+|+. +.|
T Consensus 424 ~~~~Y~L~AVV~H~G~~~SGHY~aY~r~~--~~~ 455 (492)
T KOG1867|consen 424 PDHLYELRAVVVHHGTVGSGHYVAYRRQS--GGW 455 (492)
T ss_pred CCceEEEEEEEEeccCCCCCceEEEEEeC--CCc
Confidence 45789999999999999999999999995 555
No 18
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-42 Score=331.53 Aligned_cols=265 Identities=23% Similarity=0.309 Sum_probs=203.7
Q ss_pred CchhhhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcC-----CCCC---CCCCC-hHHHHHHHHHHHHHcCCCCCCCC
Q 011215 184 PSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLI-----PENY---RHCKS-PLVHRFGDLTRKIWHARNFKGQV 254 (491)
Q Consensus 184 ~~L~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~-----~~~~---~~~~~-~l~~~l~~L~~~l~s~~~fk~~v 254 (491)
..++-...+||.|+|||||||++||||+.+..+...|+. .-++ ....+ -+...|..|...+..... ..|
T Consensus 64 ~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~--~si 141 (415)
T COG5533 64 KRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGP--KSI 141 (415)
T ss_pred hhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCC--ccc
Confidence 344455567999999999999999999999999874442 1122 22233 345666666665554443 359
Q ss_pred CHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCC----------------------------------C
Q 011215 255 SPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK----------------------------------N 300 (491)
Q Consensus 255 sP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~----------------------------------~ 300 (491)
+|..|+..++.. ++.|++.-|||++||+.+||+.||+++++.+. +
T Consensus 142 s~~nF~~i~~~~-n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn 220 (415)
T COG5533 142 SPRNFIDILSGR-NKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSN 220 (415)
T ss_pred chHHHHHHHccc-cccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccc
Confidence 999999999988 89999999999999999999999999974320 4
Q ss_pred CCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHH
Q 011215 301 TSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLF 380 (491)
Q Consensus 301 ~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~ 380 (491)
.|+|.+.|.|+..++++|..|+ .+++++.+|..|.+|+|... ++.|.
T Consensus 221 ~S~v~~~f~gq~~srlqC~~C~---------------------~TStT~a~fs~l~vp~~~v~------------~~~l~ 267 (415)
T COG5533 221 KSLVAKTFFGQDKSRLQCEACN---------------------YTSTTIAMFSTLLVPPYEVV------------QLGLQ 267 (415)
T ss_pred hHHHHHHHhhhhhhhhhhhhcC---------------------CceeEEeccceeeeccchhe------------eecHH
Confidence 5788999999999999999997 88999999999999988642 56799
Q ss_pred HHHhhccccc---------ceeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeE----eccCccccccCCC
Q 011215 381 NILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLV----NFPVKNLELKDYI 447 (491)
Q Consensus 381 ~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V----~FP~~~LDL~~y~ 447 (491)
+|+.+|..++ |..|+.++.++|++.|.+||+||||||+||......+.|++++- +||.+ ....+..
T Consensus 268 eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e-~~v~~~f 346 (415)
T COG5533 268 ECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVE-VNVTLLF 346 (415)
T ss_pred HHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCce-ecccccc
Confidence 9999998654 55688888999999999999999999999985444455555543 22221 1111111
Q ss_pred CCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 448 PLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 448 ~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
. ....-...+|+|+|||+|.|+.++|||+++|+. ++.|
T Consensus 347 ~----~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~--~~~W 384 (415)
T COG5533 347 N----NGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGTW 384 (415)
T ss_pred c----CCCCCCccceeEEEEEeecceecCceeEEeeee--cCce
Confidence 1 112233467999999999999999999999998 5788
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-41 Score=332.67 Aligned_cols=182 Identities=25% Similarity=0.335 Sum_probs=157.7
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~ 272 (491)
||+|+||||||||+||+|+|+|+||++++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999988311
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCce-eEEeec
Q 011215 273 IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITT-ETSRMP 351 (491)
Q Consensus 273 ~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~-s~~~e~ 351 (491)
.||||+|||.+||+.|+. .+.++|.|++...++|..|+ .. +.+.++
T Consensus 33 --~QqDa~EFl~~ll~~l~~----------~i~~~F~g~~~~~i~C~~C~---------------------~~s~~~~e~ 79 (240)
T cd02662 33 --EQQDAHELFQVLLETLEQ----------LLKFPFDGLLASRIVCLQCG---------------------ESSKVRYES 79 (240)
T ss_pred --hhcCHHHHHHHHHHHHHH----------hccCccccEEEEEEEeCCCC---------------------CccCcceee
Confidence 899999999999999993 47889999999999999997 33 346899
Q ss_pred ceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccccee---eccccceEEEEEeccCCceeEEEEeeEeecC-cee
Q 011215 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTE---VVRPHVARMRYRVTRLPKYMILHMRRFTKNN-FFV 427 (491)
Q Consensus 352 f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~e---c~~~~~a~k~~~i~~lP~~LiihLkRF~~~~-~~~ 427 (491)
|+.|+|+||..+. .+..+|++||+.|..++..+ |..+ +.+|.++|+||+|||+||.++. +..
T Consensus 80 f~~LsL~ip~~~~---------~~~~sl~~~L~~~~~~E~l~~~~C~~C-----~~~i~~lP~vLii~LkRF~~~~~~~~ 145 (240)
T cd02662 80 FTMLSLPVPNQSS---------GSGTTLEHCLDDFLSTEIIDDYKCDRC-----QTVIVRLPQILCIHLSRSVFDGRGTS 145 (240)
T ss_pred eeeeEecccccCC---------CCCCCHHHHHHHhcCcccccCcCCCCC-----eEEeecCCcEEEEEEEEEEEcCCCce
Confidence 9999999997432 23579999999999876543 4333 7789999999999999999887 788
Q ss_pred ecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeC
Q 011215 428 EKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRK 486 (491)
Q Consensus 428 ~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~ 486 (491)
.|+++.|.||.. | ....|+|+|||+|.|+.++|||++|+|.+
T Consensus 146 ~K~~~~v~fp~~-l----------------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~ 187 (240)
T cd02662 146 TKNSCKVSFPER-L----------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKP 187 (240)
T ss_pred eeeccEEECCCc-c----------------CCceEEEEEEEEEeccCCCceEEEEEeCC
Confidence 999999999975 5 13569999999999999999999999997
No 20
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-42 Score=359.34 Aligned_cols=160 Identities=25% Similarity=0.392 Sum_probs=126.9
Q ss_pred CCceEEecccCcccccC-CCCChhcccccc---cCCcEEEEecCcceeecCCceec-c-CC--chhhh-hh---------
Q 011215 130 NLNVYACLVCGKYYQGR-GQKSHAYTHSLE---AGHHVYINLRTEKVYCLPDGYEI-N-DP--SLEDI-RH--------- 191 (491)
Q Consensus 130 ~~nl~~CL~CG~~~~Gr-~~~sha~~H~~~---~~H~v~v~l~t~~vyc~~c~~~v-~-d~--~L~di-~~--------- 191 (491)
..-+|+||.||.++||| +...||+.|++. +.|+|+||+.|..+|||+|+..+ . +. .+..+ -+
T Consensus 90 ~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~~~~~kn~l~e~vd~l~k~a~~~~ 169 (877)
T KOG1873|consen 90 DNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKLVPFDKKNLLGEKVDLLIKVASKTS 169 (877)
T ss_pred ccceeeecccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchhccccchhHHHHHHHHHHHHHhccc
Confidence 45799999999999999 889999999985 47999999999999999999833 2 11 11111 00
Q ss_pred ------------------------------------cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCC--------
Q 011215 192 ------------------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR-------- 227 (491)
Q Consensus 192 ------------------------------------~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~-------- 227 (491)
-||.|||||||+|||||.|+.+|.||+.|+... ..
T Consensus 170 ~~~spn~~~~s~~~ek~e~~ski~~ggie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~-~Sgt~v~I~~ 248 (877)
T KOG1873|consen 170 LTRSPNTLKISSEEEKLEKGSKIKKGGIEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEK-ESGTSVKIRP 248 (877)
T ss_pred cccCCCcccchhhHHhhhhcccccccCccccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhc-cCCceeEecC
Confidence 199999999999999999999999999998422 11
Q ss_pred -------------CCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhh
Q 011215 228 -------------HCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL 294 (491)
Q Consensus 228 -------------~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l 294 (491)
....++..+|..|. .|.. .+++.|+|..|+..+... .|+|.++.||||||+|++||+.|..+.
T Consensus 249 ~~~s~l~~L~~el~~~g~lt~al~~~~-e~~e--~~ksv~~Pr~lF~~~C~k-~pqF~g~~QhDsHELLR~LLD~l~~EE 324 (877)
T KOG1873|consen 249 PLDSSLSPLFSELSSPGPLTYALANLL-EMSE--TTKSVITPRTLFGQFCSK-APQFRGYDQHDSHELLRCLLDSLRSEE 324 (877)
T ss_pred ccccchhhHHHhccCCcchhHHHHhhh-hhhh--ccCCccCHHHHHHHHHHh-CCcccccccccHHHHHHHHHHhhhHHH
Confidence 12234555555532 3322 246899999999999999 899999999999999999999998764
No 21
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.5e-39 Score=313.98 Aligned_cols=220 Identities=27% Similarity=0.521 Sum_probs=178.4
Q ss_pred hcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCC--------CCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 011215 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP--------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQA 262 (491)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~--------~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~ 262 (491)
++||.|+||||||||+||+|+++|+||++++.. ........++.++|..|+..||.+......++|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 369999999999999999999999999999953 111223457999999999999998444678999999999
Q ss_pred HHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCC----------CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCC
Q 011215 263 VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEK 332 (491)
Q Consensus 263 i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~----------~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~ 332 (491)
++.. .+.|..+.||||+|||..||+.|+.+..... ...+++.++|.+.+...+.|..|+
T Consensus 81 l~~~-~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~---------- 149 (269)
T PF00443_consen 81 LSSI-NPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCK---------- 149 (269)
T ss_dssp HHHH-CGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTT----------
T ss_pred cccc-ccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccc----------
Confidence 9998 5779999999999999999999999976532 346788999999999999999986
Q ss_pred CCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccceeeccccceEEEEEeccCCce
Q 011215 333 GSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKY 412 (491)
Q Consensus 333 ~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~ec~~~~~a~k~~~i~~lP~~ 412 (491)
.. +.+|.++|+|
T Consensus 150 -----------~~---------------------------------------------------------~~~~~~~P~~ 161 (269)
T PF00443_consen 150 -----------NS---------------------------------------------------------QSSISSLPPI 161 (269)
T ss_dssp -----------CE---------------------------------------------------------EEEEEEBBSE
T ss_pred -----------cc---------------------------------------------------------ccccccccce
Confidence 22 5678999999
Q ss_pred eEEEEeeEeec--CceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCC
Q 011215 413 MILHMRRFTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEEL 490 (491)
Q Consensus 413 LiihLkRF~~~--~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~ 490 (491)
|+|+|+||.++ .....|+...|.||.+.|||++++..+..... ...+|+|+|||+|.|+.++|||+||+|+..+++
T Consensus 162 L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~--~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~ 239 (269)
T PF00443_consen 162 LIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQ--SNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGK 239 (269)
T ss_dssp EEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHT--SSSEEEEEEEEEEESSTTSEEEEEEEEETTTTE
T ss_pred eeeccccceeccccccccccccccccCchhhhhhhhhcccccccc--ccceeeehhhhccccccccceEEEeeccccCCe
Confidence 99999999654 44689999999999535999999875432111 246799999999999999999999999986667
Q ss_pred C
Q 011215 491 W 491 (491)
Q Consensus 491 W 491 (491)
|
T Consensus 240 W 240 (269)
T PF00443_consen 240 W 240 (269)
T ss_dssp E
T ss_pred E
Confidence 8
No 22
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-38 Score=306.00 Aligned_cols=194 Identities=32% Similarity=0.501 Sum_probs=168.2
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~ 272 (491)
||.|+|||||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecc
Q 011215 273 IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPF 352 (491)
Q Consensus 273 ~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f 352 (491)
.||||+||+.+||+.|+ ++|.++|+|++..+++|..|+ ..+.+.++|
T Consensus 21 --~QqDa~Ef~~~ll~~l~----------~~i~~~F~~~~~~~~~C~~C~---------------------~~~~~~e~~ 67 (230)
T cd02674 21 --DQQDAQEFLLFLLDGLH----------SIIVDLFQGQLKSRLTCLTCG---------------------KTSTTFEPF 67 (230)
T ss_pred --hhhhHHHHHHHHHHHHh----------hhHHheeCCEEeCcEEcCCCc---------------------CCcceecce
Confidence 79999999999999999 368999999999999999997 667788999
Q ss_pred eeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccCCceeEEEEeeEeec
Q 011215 353 LMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKN 423 (491)
Q Consensus 353 ~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~ 423 (491)
+.|+|++|..... .+..+|.++|+.|...+ |..|+..+.+.++.+|.++|++|+|||+||.++
T Consensus 68 ~~l~l~ip~~~~~--------~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~ 139 (230)
T cd02674 68 TYLSLPIPSGSGD--------APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS 139 (230)
T ss_pred eEEEEecccccCC--------CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC
Confidence 9999999974321 35689999999887654 344667778889999999999999999999998
Q ss_pred CceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 424 NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 424 ~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
.+...|+.+.|.||...|||++|+... ......+|+|+|||+|.|+.++|||++|+|...+++|
T Consensus 140 ~~~~~K~~~~v~~~~~~l~l~~~~~~~----~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W 203 (230)
T cd02674 140 RGSTRKLTTPVTFPLNDLDLTPYVDTR----SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDW 203 (230)
T ss_pred CCCcccCCceEeccccccccccccCcc----cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCce
Confidence 888999999999997669999986321 1233467999999999998899999999999766889
No 23
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.6e-39 Score=326.38 Aligned_cols=251 Identities=19% Similarity=0.281 Sum_probs=189.6
Q ss_pred cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCC--------------C---------CChHHHHHHHHHHHHHcCC
Q 011215 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH--------------C---------KSPLVHRFGDLTRKIWHAR 248 (491)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~--------------~---------~~~l~~~l~~L~~~l~s~~ 248 (491)
+||.|+||||||||+||+|+++|+||++++....... . ..+++.+|+.||..|+.+.
T Consensus 2 vGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s~ 81 (343)
T cd02666 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHSN 81 (343)
T ss_pred CCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999999999999999999996431100 0 1158999999999999776
Q ss_pred CCCCCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCC------------CCCCcccCceeEEEEEE
Q 011215 249 NFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK------------NTSIIYECFQGELEVVK 316 (491)
Q Consensus 249 ~fk~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~------------~~sii~~~F~G~l~~~~ 316 (491)
+..|+|..++..+.. .||||+||+..||+.|+.+++.... ..++|.++|.|++.+.+
T Consensus 82 --~~~v~P~~~l~~l~~---------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i 150 (343)
T cd02666 82 --TRSVTPSKELAYLAL---------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQL 150 (343)
T ss_pred --CCccCcHHHHHhccc---------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEE
Confidence 478999999986542 8999999999999999999975431 25689999999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccceeecc
Q 011215 317 EIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVR 396 (491)
Q Consensus 317 ~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~ec~~ 396 (491)
+|..|+- ....+.+.++|+.|+|+|+.... +. .......+|.++|+.|+..+.
T Consensus 151 ~c~~~~~------------------~~~~s~~~E~F~~L~l~I~~~~~--~~--~~~~~~~~L~d~L~~~~~~e~----- 203 (343)
T cd02666 151 VPESMGN------------------QPSVRTKTERFLSLLVDVGKKGR--EI--VVLLEPKDLYDALDRYFDYDS----- 203 (343)
T ss_pred EecccCC------------------CCCCccccceeEEEEEecCcccc--cc--cccCCCCCHHHHHHHhcChhh-----
Confidence 9877740 01678899999999999985210 00 000123689999999987774
Q ss_pred ccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCC----------------------
Q 011215 397 PHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKE---------------------- 454 (491)
Q Consensus 397 ~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~---------------------- 454 (491)
|.+||++|.|||+ +.+..+...+...+.+||.. .|..+++.......
T Consensus 204 ---------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (343)
T cd02666 204 ---------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSS-IDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQ 272 (343)
T ss_pred ---------hccCCHHHHHHHh-hcccccchheeeccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 44444445555555566642 44444432210000
Q ss_pred -CCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 455 -NEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 455 -~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
.+....+|+|+|||+|.|+.++|||++|+|+..++.|
T Consensus 273 ~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W 310 (343)
T cd02666 273 FDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVW 310 (343)
T ss_pred hcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeE
Confidence 1123577999999999999999999999999877888
No 24
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-38 Score=339.03 Aligned_cols=270 Identities=26% Similarity=0.412 Sum_probs=219.8
Q ss_pred hhhhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCC-----C--CCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 011215 186 LEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE-----N--YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHE 258 (491)
Q Consensus 186 L~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~-----~--~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ 258 (491)
.+--..+||.|+|||||||++||||+.++.||+.||... + ......++..++..++.++|.... +..+.|..
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHG-QFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCC-ceecCcHH
Confidence 333445699999999999999999999999998888531 1 112245788999999999998754 34699999
Q ss_pred HHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCC----------------------------------CCCCc
Q 011215 259 FLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK----------------------------------NTSII 304 (491)
Q Consensus 259 ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~----------------------------------~~sii 304 (491)
|+..+.+. .+.|+++.|||++||+..+++.||+++..... ..+.|
T Consensus 375 f~~~~~~y-~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i 453 (653)
T KOG1868|consen 375 FIRVLKRY-SPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKI 453 (653)
T ss_pred HHHHHhhc-ccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHH
Confidence 99999998 79999999999999999999999999864210 22347
Q ss_pred ccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHh
Q 011215 305 YECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILK 384 (491)
Q Consensus 305 ~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~ 384 (491)
.++|+|++++.++|..|+ ..++++++|+.|+|+||...... ..++|.+|+.
T Consensus 454 ~~lf~gQ~ks~Lkc~~cg---------------------~~s~t~~~f~~lslpIp~~~~~~--------~~~~L~~C~~ 504 (653)
T KOG1868|consen 454 GDLFVGQLKSYLKCQACG---------------------YTSTTFETFTDLSLPIPKKGFAG--------GKVSLEDCLS 504 (653)
T ss_pred HHHHHHHHHhheehhhcC---------------------CcceeeecceeeEEecccccccc--------cccchHhhhc
Confidence 889999999999999987 78899999999999999743211 1478999999
Q ss_pred hccccc---------ceeeccccceE--EEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCC
Q 011215 385 KFDGET---------VTEVVRPHVAR--MRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK 453 (491)
Q Consensus 385 ~f~~~~---------~~ec~~~~~a~--k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~ 453 (491)
.|++.+ |..|....... |+..|.+||++||+||+||........|+.+-|+||+..+++.++....
T Consensus 505 ~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--- 581 (653)
T KOG1868|consen 505 LFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEK--- 581 (653)
T ss_pred cccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhcccc---
Confidence 998765 34465555553 8999999999999999999987656789999999998778888766532
Q ss_pred CCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 454 ENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 454 ~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
......|+|+|||+|.|++++|||+|||+....++|
T Consensus 582 --~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W 617 (653)
T KOG1868|consen 582 --GNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRW 617 (653)
T ss_pred --CCCccceeeEEEEeccCcccCCceEEEEeecCCCce
Confidence 122345999999999999999999999988777889
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-36 Score=288.76 Aligned_cols=183 Identities=23% Similarity=0.311 Sum_probs=153.8
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~ 272 (491)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCC-------CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCce
Q 011215 273 IGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITT 345 (491)
Q Consensus 273 ~~~QqDA~EFL~~LLn~L~~~l~~~~-------~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~ 345 (491)
.||||+|||..||+.|+..++... +..++|.++|.|++..++.| |+ ..
T Consensus 21 --~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~---------------------~~ 75 (228)
T cd02665 21 --QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EG---------------------KP 75 (228)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CC---------------------Cc
Confidence 699999999999999999986431 24568999999999876655 43 45
Q ss_pred eEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccccee---eccccceEEEEEeccCCceeEEEEeeEee
Q 011215 346 ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTE---VVRPHVARMRYRVTRLPKYMILHMRRFTK 422 (491)
Q Consensus 346 s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~e---c~~~~~a~k~~~i~~lP~~LiihLkRF~~ 422 (491)
+.+.++|+.|+|+|... .+|++||+.|..++..+ |.....+.++.+|.+||+||+|||+||.+
T Consensus 76 s~~~E~F~~L~l~i~~~--------------~~L~e~L~~~~~ee~l~~~~~~~~~~~~~~~~i~~lP~vL~i~LkRF~~ 141 (228)
T cd02665 76 FCNCETFGQYPLQVNGY--------------GNLHECLEAAMFEGEVELLPSDHSVKSGQERWFTELPPVLTFELSRFEF 141 (228)
T ss_pred ccccCccEEEEEEECCC--------------CCHHHHHHHhhhhcccccccccchhhhhhhhhhhhCChhhEEEeEeeEE
Confidence 77899999999998652 48999999987664332 22334466778899999999999999999
Q ss_pred cCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 423 NNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 423 ~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
+.....|+++.|.||.. | ....|+|+|||+|.|++++|||++|+|++.+++|
T Consensus 142 ~~~~~~Ki~~~v~FP~~-l----------------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W 193 (228)
T cd02665 142 NQGRPEKIHDKLEFPQI-I----------------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEW 193 (228)
T ss_pred cCCccEECCEEEEeeCc-c----------------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEE
Confidence 87778999999999975 4 1246999999999999999999999998778888
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-33 Score=268.91 Aligned_cols=205 Identities=33% Similarity=0.555 Sum_probs=168.4
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccC
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~ 272 (491)
||.|+|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCC-------CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCce
Q 011215 273 IGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITT 345 (491)
Q Consensus 273 ~~~QqDA~EFL~~LLn~L~~~l~~~~-------~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~ 345 (491)
.||||+|||..+|+.|+.++.... ...+.+.++|.|.+...++|..|+ ..
T Consensus 21 --~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~---------------------~~ 77 (255)
T cd02257 21 --EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECG---------------------HE 77 (255)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCC---------------------CC
Confidence 799999999999999999887521 245789999999999999999996 45
Q ss_pred eEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccce------eec--cccceEEEEEeccCCceeEEEE
Q 011215 346 ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT------EVV--RPHVARMRYRVTRLPKYMILHM 417 (491)
Q Consensus 346 s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~------ec~--~~~~a~k~~~i~~lP~~LiihL 417 (491)
+.....+..++|++|.... +..+|.++|+.+...+.. .|. ....+.++..|.++|+||+||+
T Consensus 78 ~~~~~~~~~l~l~~~~~~~----------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l 147 (255)
T cd02257 78 SVSTEPELFLSLPLPVKGL----------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHL 147 (255)
T ss_pred ccCcccceeEEeeccCCCC----------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEe
Confidence 6667778888888886421 357999999988875432 343 3556778889999999999999
Q ss_pred eeEeecC-ceeecCCeeEeccCccccccCCCCCC-CCCCCCCCCCceEEEEEEEEeccC-CCCcEEEEEEeCCCCCC
Q 011215 418 RRFTKNN-FFVEKNPTLVNFPVKNLELKDYIPLP-TPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKSEELW 491 (491)
Q Consensus 418 kRF~~~~-~~~~K~~~~V~FP~~~LDL~~y~~~~-~~~~~~~~~~~Y~L~avI~H~G~~-~~GHY~~~vr~~~~~~W 491 (491)
+||..+. +...|+...|.||.. |++..++... ..........+|+|+|||+|.|.. ++|||++|+|+...++|
T Consensus 148 ~R~~~~~~~~~~k~~~~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W 223 (255)
T cd02257 148 KRFSFNEDGTKEKLNTKVSFPLE-LDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKW 223 (255)
T ss_pred eceeeccccccccCCCeEeCCCc-ccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCce
Confidence 9999877 788999999999985 9999887531 011122334679999999999976 99999999999765888
No 27
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-33 Score=275.00 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=153.9
Q ss_pred CcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCC
Q 011215 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273 (491)
Q Consensus 194 L~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~ 273 (491)
|.|.||+||+||.+|+|.++ ++. ++.|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i--------------------------------------------------~~~-~~~F~~ 30 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI--------------------------------------------------GKI-NTEFDN 30 (245)
T ss_pred ceecCCeeeehhHHHHHHHH--------------------------------------------------hhh-hhhcCC
Confidence 68999999999999998652 223 678999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCC---------CCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 011215 274 GVQSNPVEFMSWLLNTLHSDLRNTKK---------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344 (491)
Q Consensus 274 ~~QqDA~EFL~~LLn~L~~~l~~~~~---------~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~ 344 (491)
++||||||||++||+.|++++....+ ....+.++|.|++++.++|..|+ .
T Consensus 31 ~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~---------------------~ 89 (245)
T cd02673 31 DDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCS---------------------F 89 (245)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCC---------------------C
Confidence 99999999999999999987643210 11234578999999999999997 7
Q ss_pred eeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc-----ceeeccccceEEEEEeccCCceeEEEEee
Q 011215 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET-----VTEVVRPHVARMRYRVTRLPKYMILHMRR 419 (491)
Q Consensus 345 ~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~-----~~ec~~~~~a~k~~~i~~lP~~LiihLkR 419 (491)
++.+.++|++|+|++|... ...|++|++.|...+ |..|+.. .+.|+.+|.++|++|+|||||
T Consensus 90 ~s~~~e~~~~L~L~i~~~~------------~~~le~l~~~~~~~~~~e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkR 156 (245)
T cd02673 90 EENVSDVGNFLDVSMIDNK------------LDIDELLISNFKTWSPIEKDCSSCKCE-SAISSERIMTFPECLSINLKR 156 (245)
T ss_pred eeeeccccceeccccccCC------------cchHHHHHHHhhcccccCccCCCCCCc-cceeechhhhCChhhEEeeEe
Confidence 8889999999999998631 235778887776543 4456554 678888999999999999999
Q ss_pred EeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEecc-CCCCcEEEEEEeCC-CCCC
Q 011215 420 FTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQRKS-EELW 491 (491)
Q Consensus 420 F~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~-~~~GHY~~~vr~~~-~~~W 491 (491)
|.+.. +....+..+ .++|.+|... ..+|+|+|||+|.|+ +++|||+||+|... +++|
T Consensus 157 f~~~~----~~~~~~~~~--~~~~~~~~~~---------~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~W 215 (245)
T cd02673 157 YKLRI----ATSDYLKKN--EEIMKKYCGT---------DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSW 215 (245)
T ss_pred eeecc----ccccccccc--ccccccccCC---------CceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeE
Confidence 97533 222223322 3678877641 256999999999995 89999999999976 6889
No 28
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-33 Score=295.27 Aligned_cols=267 Identities=20% Similarity=0.302 Sum_probs=216.6
Q ss_pred CchhhhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-CCC----CChHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 011215 184 PSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHC----KSPLVHRFGDLTRKIWHARNFKGQVSPHE 258 (491)
Q Consensus 184 ~~L~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~----~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ 258 (491)
.+-..+.++||+|-|+|||||+++|-|.++|.+|.-++...+. ..+ ...+.+.++.+|..+..++. ..+.|..
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l--QyyVPeg 165 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL--QYYVPEG 165 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh--hhhcchh
Confidence 3444566789999999999999999999999999877653333 111 12388999999999877663 6899999
Q ss_pred HHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCC
Q 011215 259 FLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGD 338 (491)
Q Consensus 259 ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~ 338 (491)
|.+.+... +......+||||.|||..||+.+++.++... ...++.+.|+|......+|..|.
T Consensus 166 ~Wk~Fr~~-~~pln~reqhDA~eFf~sLld~~De~LKklg-~p~lf~n~f~G~ysdqKIC~~Cp---------------- 227 (944)
T KOG1866|consen 166 FWKQFRLW-GEPLNLREQHDALEFFNSLLDSLDEALKKLG-HPQLFSNTFGGSYSDQKICQGCP---------------- 227 (944)
T ss_pred HHHHhhcc-CCccchHhhhhHHHHHHHHHHHHHHHHHHhC-CcHHHHHHhcCccchhhhhccCC----------------
Confidence 99999888 6778899999999999999999999998654 34578899999999999999997
Q ss_pred CCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---------ceeeccccceEEEEEeccC
Q 011215 339 DHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRL 409 (491)
Q Consensus 339 ~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~---------~~ec~~~~~a~k~~~i~~l 409 (491)
+.....++|..|+|+|.. .+|++.|+.|.+.+ |..|..++...||+.|.+|
T Consensus 228 -----HRY~~eE~F~~l~l~i~~---------------~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~L 287 (944)
T KOG1866|consen 228 -----HRYECEESFTTLNLDIRH---------------QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKL 287 (944)
T ss_pred -----cccCccccceeeeeeccc---------------chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhC
Confidence 666788999999999973 47889998886533 3446666666788999999
Q ss_pred CceeEEEEeeEeec--CceeecCCeeEeccCccccccCCCCCCCCC------------CCCCCCCceEEEEEEEEeccCC
Q 011215 410 PKYMILHMRRFTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPK------------ENEKLRSKYDLIANIVHDGKPE 475 (491)
Q Consensus 410 P~~LiihLkRF~~~--~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~------------~~~~~~~~Y~L~avI~H~G~~~ 475 (491)
|++|+||||||.++ +.-..|-+..+.||-. |||.||+...... .......+|+|+|||+|+|.+.
T Consensus 288 Psvl~IqLkRF~yD~e~~~~iK~n~~frFP~~-ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAs 366 (944)
T KOG1866|consen 288 PSVLAIQLKRFDYDWERECAIKFNDYFRFPRE-LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQAS 366 (944)
T ss_pred Chhheehhhhccchhhhccccccchhcccchh-hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccccc
Confidence 99999999999865 4567899999999964 9999998654321 1123457899999999999999
Q ss_pred CCcEEEEEEeCC---CCCC
Q 011215 476 GGFYRVFVQRKS---EELW 491 (491)
Q Consensus 476 ~GHY~~~vr~~~---~~~W 491 (491)
+|||++|++.+. +++|
T Consensus 367 aGHYySfIk~rr~~~~~kW 385 (944)
T KOG1866|consen 367 AGHYYSFIKQRRGEDGNKW 385 (944)
T ss_pred CcchhhhhhhhccCCCCce
Confidence 999999997653 3566
No 29
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-33 Score=292.58 Aligned_cols=262 Identities=17% Similarity=0.218 Sum_probs=216.4
Q ss_pred hhhhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 011215 186 LEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE-NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (491)
Q Consensus 186 L~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~-~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~ 264 (491)
-....||||+|.|.||||||.||+|+.+..||+-..... ......+.++.+|+++|..|..++ .+|+..+|....+
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~---~PvdTteltrsfg 264 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGE---EPVDTTELTRSFG 264 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccC---CCcchHHhhhhcC
Confidence 345678899999999999999999999999999988532 223345678899999999998876 6899999999988
Q ss_pred hhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 011215 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344 (491)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~ 344 (491)
..+ +....|+|.+||=..|.+.|++.+++.. -..-+..+|-|+|.+.+.|.+.+ .
T Consensus 265 Wds---~dsf~QHDiqEfnrVl~DnLEksmrgt~-VEnaln~ifVgkmksyikCvnvn---------------------y 319 (1089)
T COG5077 265 WDS---DDSFMQHDIQEFNRVLQDNLEKSMRGTV-VENALNGIFVGKMKSYIKCVNVN---------------------Y 319 (1089)
T ss_pred ccc---chHHHHHhHHHHHHHHHHHHHHhhcCCh-hhhHHhHHHHHHhhceeeEEEec---------------------h
Confidence 765 5566799999999999999999776554 33458899999999999998865 5
Q ss_pred eeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc------eeec--cccceEEEEEeccCCceeEEE
Q 011215 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV------TEVV--RPHVARMRYRVTRLPKYMILH 416 (491)
Q Consensus 345 ~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~------~ec~--~~~~a~k~~~i~~lP~~Liih 416 (491)
.+.+.+.||++.|.+... -+|++.++.|...+. .-|. +-+.|.|-..|.+||++|-||
T Consensus 320 EsarvedfwdiqlNvK~~--------------knLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlq 385 (1089)
T COG5077 320 ESARVEDFWDIQLNVKGM--------------KNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQ 385 (1089)
T ss_pred hhhhHHHHHHHHhcccch--------------hhHHHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHH
Confidence 677799999999998764 367888877765443 2232 346778889999999999999
Q ss_pred EeeEeec--CceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 417 MRRFTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 417 LkRF~~~--~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
||||.++ .-...|++...+||+. +||.||++....++. .....|.|+||+||.|....|||+|++|...+|+|
T Consensus 386 LKRFeyDfe~d~mvKINDryEFP~e-iDl~pfld~da~kse-n~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~W 460 (1089)
T COG5077 386 LKRFEYDFERDMMVKINDRYEFPLE-IDLLPFLDRDADKSE-NSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRW 460 (1089)
T ss_pred HHHhccccccCceeeecccccCcch-hccccccCchhhhhc-ccCcEEEEEEEEEeccccCCceEEEEeccccCCCc
Confidence 9999965 3367899999999986 999999997655432 33478999999999999999999999998889999
No 30
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-31 Score=295.69 Aligned_cols=271 Identities=25% Similarity=0.418 Sum_probs=222.0
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCC--------CCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~--------~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~ 261 (491)
...||.|+|||||||+.+|+|.+.+++++||+... +.......+...+..++..+|++.. ..|.|..+..
T Consensus 245 g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~--~~v~~~~~~~ 322 (842)
T KOG1870|consen 245 GETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK--SAVAPTSFRT 322 (842)
T ss_pred cccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc--cccCchhhhh
Confidence 34599999999999999999999999999998521 1123346788999999999999873 5799999999
Q ss_pred HHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCC----------------------------CCCCCcccCceeEEE
Q 011215 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELE 313 (491)
Q Consensus 262 ~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~----------------------------~~~sii~~~F~G~l~ 313 (491)
.+... .++|.++.|||.+||+.+||+.||+++.... +..++|.++|.|.+.
T Consensus 323 ~~~~~-a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~ 401 (842)
T KOG1870|consen 323 SLASF-ASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYK 401 (842)
T ss_pred hhhhc-cccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceec
Confidence 99998 6899999999999999999999999986421 157899999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCc-----------------------cc---
Q 011215 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLF-----------------------KD--- 367 (491)
Q Consensus 314 ~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~-----------------------kd--- 367 (491)
+..+|..|+ .++.++++|.+|+|++|..... ++
T Consensus 402 S~~~c~~C~---------------------~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 460 (842)
T KOG1870|consen 402 STLQCPTCG---------------------KVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRI 460 (842)
T ss_pred ccccCccCC---------------------CceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchH
Confidence 999999997 6778888888888887743210 00
Q ss_pred -----------------------------------------------------c--------------------------
Q 011215 368 -----------------------------------------------------V-------------------------- 368 (491)
Q Consensus 368 -----------------------------------------------------~-------------------------- 368 (491)
.
T Consensus 461 ~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 540 (842)
T KOG1870|consen 461 RDLLEYLSRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGI 540 (842)
T ss_pred HHHHHHHHHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCc
Confidence 0
Q ss_pred -----------------------------------------c-----------------c--------------------
Q 011215 369 -----------------------------------------M-----------------E-------------------- 370 (491)
Q Consensus 369 -----------------------------------------~-----------------~-------------------- 370 (491)
. .
T Consensus 541 ~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~ 620 (842)
T KOG1870|consen 541 RSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNS 620 (842)
T ss_pred ccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhcc
Confidence 0 0
Q ss_pred -----------c---------c-------------------------------------------------cCCCCCHHH
Q 011215 371 -----------K---------N-------------------------------------------------IIPQVPLFN 381 (491)
Q Consensus 371 -----------~---------~-------------------------------------------------~~p~vsL~~ 381 (491)
. + ....++|++
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~ 700 (842)
T KOG1870|consen 621 DQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLES 700 (842)
T ss_pred ccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHH
Confidence 0 0 001356666
Q ss_pred HHhhcccccc---------eeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCC
Q 011215 382 ILKKFDGETV---------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTP 452 (491)
Q Consensus 382 ~L~~f~~~~~---------~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~ 452 (491)
||+.|...+. ..|+..+.|+|++.+.+||+|||||||||.+.++...|+.+.|+||+..|||++|+..+..
T Consensus 701 cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~ 780 (842)
T KOG1870|consen 701 CLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ 780 (842)
T ss_pred HHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc
Confidence 7777765442 2366677899999999999999999999999999889999999999999999999985421
Q ss_pred CCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 453 KENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 453 ~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
..|+|+||++|+|.+.+|||++|.|+..+++|
T Consensus 781 -------~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w 812 (842)
T KOG1870|consen 781 -------VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKW 812 (842)
T ss_pred -------ceeeeeeeecccCCcCCcchhhhhhcCCCCce
Confidence 67999999999999999999999999888999
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.9e-29 Score=250.21 Aligned_cols=215 Identities=19% Similarity=0.184 Sum_probs=163.6
Q ss_pred hhhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhh
Q 011215 187 EDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKA 266 (491)
Q Consensus 187 ~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~ 266 (491)
....++||.|.|.|||+||+||+|.++|+||+++....+......+|.++|+.|| ..+.
T Consensus 11 n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~lf---------------s~~i------ 69 (268)
T cd02672 11 NKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVACPKESCLLCELGYLF---------------STLI------ 69 (268)
T ss_pred ccccccccccCCccchHHHHHHHHHhcHHHHHHHHhhcccCCcCccHHHHHHHHH---------------HHHH------
Confidence 4456889999999999999999999999999973322222334579999999999 1111
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 011215 267 SKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTE 346 (491)
Q Consensus 267 s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s 346 (491)
+-|-.+|++.|..+..... ..|+ .++
T Consensus 70 -------------q~F~~fll~~i~~~~~~~~--------------------~~C~---------------------~~s 95 (268)
T cd02672 70 -------------QNFTRFLLETISQDQLGTP--------------------FSCG---------------------TSR 95 (268)
T ss_pred -------------HHHHHHHHHHHHHHhcccC--------------------CCCC---------------------cee
Confidence 3355678888876542210 4454 788
Q ss_pred EEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc------ceeeccccceEEEEEeccCCc----eeEEE
Q 011215 347 TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET------VTEVVRPHVARMRYRVTRLPK----YMILH 416 (491)
Q Consensus 347 ~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~------~~ec~~~~~a~k~~~i~~lP~----~Liih 416 (491)
.+.++|+.|+|++|... ..+.++|.+||+.|...+ |..|+..+.+.|+.+|.+||+ ||+||
T Consensus 96 ~~~~~~~~LsLpip~~~---------~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~ 166 (268)
T cd02672 96 NSVSLLYTLSLPLGSTK---------TSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVIN 166 (268)
T ss_pred eccccceeeeeecCccc---------cccCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEE
Confidence 89999999999999642 234689999999998653 456888889999999999999 99999
Q ss_pred EeeEeecC-------ceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccC-CCCcEEEEEEeCC-
Q 011215 417 MRRFTKNN-------FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKS- 487 (491)
Q Consensus 417 LkRF~~~~-------~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~-~~GHY~~~vr~~~- 487 (491)
+|||.... ....|+...|.||.. +++..+.... .....+|+|+|||+|.|+. ++|||+||||...
T Consensus 167 lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~~~~~-----~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~ 240 (268)
T cd02672 167 LSVTNGEFDDINVVLPSGKVMQNKVSPKAI-DHDKLVKNRG-----QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNE 240 (268)
T ss_pred EeccChhhcccCcceeEEEecCCeeccccc-ccchhhhccC-----CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCC
Confidence 99998532 245688889999975 6666654322 1224679999999999965 9999999999864
Q ss_pred ---CCCC
Q 011215 488 ---EELW 491 (491)
Q Consensus 488 ---~~~W 491 (491)
.++|
T Consensus 241 ~~~~~~W 247 (268)
T cd02672 241 ESTHGRW 247 (268)
T ss_pred CCCCCcE
Confidence 5788
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-29 Score=291.23 Aligned_cols=257 Identities=20% Similarity=0.278 Sum_probs=214.7
Q ss_pred cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCC---CCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcc
Q 011215 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE---NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (491)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~---~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~ 268 (491)
+||.|+||||||||+||+|+.++.||.-++... ....+...+..+|+.||..|...+ +..|.|.+|...+...+
T Consensus 171 vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~--~k~Vdt~~~~~~~~~~~- 247 (1093)
T KOG1863|consen 171 VGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSK--RKYVDTSELTKSLGWDS- 247 (1093)
T ss_pred ccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcC--CCCcCchhhhhhhhccc-
Confidence 799999999999999999999999999999754 223345568899999999998876 35899999999998873
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEE
Q 011215 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (491)
Q Consensus 269 ~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~ 348 (491)
.....|||++||+..|++.|...+.... ....|.++|.|++...+.|..|. ..+..
T Consensus 248 --~~~~~QqDvqEf~~~l~d~LE~~~~~~~-~~~~l~~lf~g~~~~~i~c~~~~---------------------~~s~r 303 (1093)
T KOG1863|consen 248 --NDSFEQQDVQEFLTKLLDWLEDSMIDAK-VENTLQDLFTGKMKSVIKCIDVD---------------------FESSR 303 (1093)
T ss_pred --ccHHhhhhHHHHHHHHHHHHHhhccchh-hhhhhhhhhcCCcceEEEEEeee---------------------eeccc
Confidence 4567899999999999999999887654 35678999999999999999886 55678
Q ss_pred eecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc--------eeeccccceEEEEEeccCCceeEEEEeeE
Q 011215 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV--------TEVVRPHVARMRYRVTRLPKYMILHMRRF 420 (491)
Q Consensus 349 ~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~--------~ec~~~~~a~k~~~i~~lP~~LiihLkRF 420 (491)
.+.|+++.|.+... -+|.+.|..|...+. .+|...+.|.+...+.+||++|.|||+||
T Consensus 304 ~e~f~d~ql~~~g~--------------~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf 369 (1093)
T KOG1863|consen 304 SESFLDLQLNGKGV--------------KNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRF 369 (1093)
T ss_pred cccccCccccccch--------------hhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCchhhhhhhhe
Confidence 89999999988753 248888888876442 34666777888899999999999999999
Q ss_pred eec--CceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 421 TKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 421 ~~~--~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
.++ .....|++....||.. |+|.+|+..+.....+. .+.|+|.||++|.|...+|||++|++.+..++|
T Consensus 370 ~~~~~~~~~~Ki~d~~~fp~~-i~~d~~~~~~~~~~~~~-~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~w 440 (1093)
T KOG1863|consen 370 EYDFSTGQKIKINDKFEFPLI-IDMDRYLSRFKAEESER-SAVYSLHAVLVHSGDAHSGHYVAYINPKLDGKW 440 (1093)
T ss_pred eeeccCCceeehhhccCCccc-cccchhccccchhhhhc-cceeccchhhcccccccCccceeeecchhhccc
Confidence 986 4578999999999985 99999988511111122 158999999999999999999999998888999
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.95 E-value=2e-26 Score=232.13 Aligned_cols=261 Identities=22% Similarity=0.312 Sum_probs=209.6
Q ss_pred CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-CCCCChHHHHHHHHHHHHH-cCCCCCCCCCHHHHHHHHHhhcccc
Q 011215 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIW-HARNFKGQVSPHEFLQAVMKASKKR 270 (491)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~-s~~~fk~~vsP~~ll~~i~~~s~~~ 270 (491)
||.|-+++||+||+||+|+.+|++|+.++. +. .....+|.|.|+-||+.|- .++ .....+..|+.+++.. ...
T Consensus 2 GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~--h~~c~~e~cL~cELgfLf~ml~~~~~--g~~cq~sNflr~l~~~-~~a 76 (295)
T PF13423_consen 2 GLENHIPNSYCNSLLQVLYFIPPLRNFLLS--HLECPKEFCLLCELGFLFDMLDSKAK--GINCQASNFLRALSWI-PEA 76 (295)
T ss_pred CCcCCCCcchHHHHHHHHHhCHHHHHHHHh--CcCCCccccHHHHHHHHHHHhhhhcC--CCcChHHHHHHHHhcC-HHH
Confidence 999999999999999999999999999995 33 3345799999999999998 554 3567888999999876 344
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhhcCCC------------CCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCC
Q 011215 271 FRIGVQSNPVEFMSWLLNTLHSDLRNTKK------------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGD 338 (491)
Q Consensus 271 F~~~~QqDA~EFL~~LLn~L~~~l~~~~~------------~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~ 338 (491)
...+.|+|.++|+.+||+.|+.++..... ..+.|.++|........+|..|+
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~---------------- 140 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCG---------------- 140 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccC----------------
Confidence 66778999999999999999999875442 35678899999999999998887
Q ss_pred CCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccc------ccceeeccccceEEEEEeccCCce
Q 011215 339 DHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDG------ETVTEVVRPHVARMRYRVTRLPKY 412 (491)
Q Consensus 339 ~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~------~~~~ec~~~~~a~k~~~i~~lP~~ 412 (491)
..+.+.+....+.|..|+.+ +.+++.++|+.+.. ..|..|++......+.+|.+||+|
T Consensus 141 -----~~~~~~~~~~~~~l~yp~~~-----------~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpV 204 (295)
T PF13423_consen 141 -----HESVKESSTLVLDLPYPPSN-----------SNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPV 204 (295)
T ss_pred -----CeEEeecceeeeeccCCCCC-----------ccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcE
Confidence 56677777777777666521 25799999987754 335667777666677789999999
Q ss_pred eEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCC--CCCCCCCceEEEEEEEEec-cCCCCcEEEEEEeCCC-
Q 011215 413 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK--ENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSE- 488 (491)
Q Consensus 413 LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~--~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~~~~- 488 (491)
|.|.++|+....+-..|+...+.+|.. +++..++...... .......+|.|.|+|+|.| +.++|||+++||-..+
T Consensus 205 L~In~~~~~~~~~w~~~~~~~~~ip~~-i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~ 283 (295)
T PF13423_consen 205 LSINLNRYSEEEFWPKKNWLKIWIPPS-INLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSD 283 (295)
T ss_pred EEEEccCCCcccccccccCCceeccee-eeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCC
Confidence 999999988764338899999999986 9998887643321 1344568899999999999 4889999999998632
Q ss_pred -CCC
Q 011215 489 -ELW 491 (491)
Q Consensus 489 -~~W 491 (491)
.+|
T Consensus 284 ~~~W 287 (295)
T PF13423_consen 284 DSQW 287 (295)
T ss_pred CCcE
Confidence 577
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=9.9e-26 Score=219.26 Aligned_cols=174 Identities=18% Similarity=0.296 Sum_probs=130.4
Q ss_pred CCcCCCC-cchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhccccc
Q 011215 193 GLNNIKE-TDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRF 271 (491)
Q Consensus 193 GL~NlGN-TCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F 271 (491)
|..|.+| +|||-|.|=+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeec
Q 011215 272 RIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351 (491)
Q Consensus 272 ~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~ 351 (491)
+||||.||+..|++.|..-+-. ...++|.|--...- ..+...+.
T Consensus 22 ---~q~D~~e~~~~l~~~~~~~~~~------~~~~~~~~g~~~~~---------------------------~~~~~~e~ 65 (241)
T cd02670 22 ---EQQDPEEFFNFITDKLLMPLLE------PKVDIIHGGKKDQD---------------------------DDKLVNER 65 (241)
T ss_pred ---HhcCHHHHHHHHHHHHhhhhhh------HHHHHHhcCccccc---------------------------cccccccc
Confidence 7999999999999998864321 23345544211100 11333455
Q ss_pred ceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccceeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCC
Q 011215 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNP 431 (491)
Q Consensus 352 f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~ 431 (491)
|+ +|+||... ....++|++||+.|+..+. |.++|++|+||||||.++.+...|+.
T Consensus 66 ~l--~l~ip~~~---------~~~~~tLedcLe~~~~~e~--------------i~~lP~vLiIhLKRF~~~~~~~~Kl~ 120 (241)
T cd02670 66 LL--QIPVPDDD---------DGGGITLEQCLEQYFNNSV--------------FAKAPSCLIICLKRYGKTEGKAQKMF 120 (241)
T ss_pred eE--EeecccCC---------CCCcCCHHHHHHHHhchhh--------------hhhCCCeEEEEEEccccCCCcceeCC
Confidence 54 44444321 1125899999999987774 89999999999999998877789999
Q ss_pred eeEeccCccccccCCCCCCCC---------------C--CCCCCCCceEEEEEEEEecc-CCCCcEEEEEEeCC
Q 011215 432 TLVNFPVKNLELKDYIPLPTP---------------K--ENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQRKS 487 (491)
Q Consensus 432 ~~V~FP~~~LDL~~y~~~~~~---------------~--~~~~~~~~Y~L~avI~H~G~-~~~GHY~~~vr~~~ 487 (491)
+.|.||.. |||.+|+..... . .......+|+|+|||+|.|+ +++|||+||||+..
T Consensus 121 ~~I~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~ 193 (241)
T cd02670 121 KKILIPDE-IDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGS 193 (241)
T ss_pred cEECCCCc-CCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCc
Confidence 99999975 999999865320 0 11233468999999999995 89999999999985
No 35
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.1e-27 Score=244.10 Aligned_cols=250 Identities=19% Similarity=0.268 Sum_probs=202.3
Q ss_pred cCCchhhhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 011215 182 NDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (491)
Q Consensus 182 ~d~~L~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~ 261 (491)
+..++.-++||||.|..-|||+|+.+|+|+-.|.||+-++.. + +..+....|-+
T Consensus 78 ~~~~~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts-----------------------~---~~~~et~dlt~ 131 (1203)
T KOG4598|consen 78 IPVDENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS-----------------------E---NDSLETKDLTQ 131 (1203)
T ss_pred eccccCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC-----------------------C---cccccchhhHh
Confidence 345677789999999999999999999999999999887721 1 23455566666
Q ss_pred HHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCC
Q 011215 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHD 341 (491)
Q Consensus 262 ~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~ 341 (491)
.++..|+. .++|+|.+|+-..+++.|+...++.+ ....|.+++.|+++..+.|+.|+
T Consensus 132 sfgw~s~e---a~~qhdiqelcr~mfdalehk~k~t~-~~~li~~ly~g~m~d~v~cl~c~------------------- 188 (1203)
T KOG4598|consen 132 SFGWTSNE---AYDQHDVQELCRLMFDALEHKWKGTE-HEKLIQDLYRGTMEDFVACLKCG------------------- 188 (1203)
T ss_pred hcCCCcch---hhhhhhHHHHHHHHHHHHHhhhcCch-HHHHHHHHhcchHHHHHHHHHcC-------------------
Confidence 66665543 56899999999999999998887665 34579999999999999999997
Q ss_pred CCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc---------eeeccccceEEEEEeccCCce
Q 011215 342 NITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV---------TEVVRPHVARMRYRVTRLPKY 412 (491)
Q Consensus 342 ~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~---------~ec~~~~~a~k~~~i~~lP~~ 412 (491)
..+++.+.|++|.|++.+-. .+..--++++.|..|..++. ..|+++..|.|-.+|+++|-+
T Consensus 189 --~e~~~~d~fld~pl~v~pfg--------~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~ 258 (1203)
T KOG4598|consen 189 --RESVKTDYFLDLPLAVKPFG--------AIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYL 258 (1203)
T ss_pred --ccccccceeecccccccCCc--------chhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeecccee
Confidence 67888999999988886532 11223578999999987663 458888899999999999999
Q ss_pred eEEEEeeEe--ecCceeecCCeeEeccCccccccCCCCCCCCC-----------------------------C-------
Q 011215 413 MILHMRRFT--KNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK-----------------------------E------- 454 (491)
Q Consensus 413 LiihLkRF~--~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~-----------------------------~------- 454 (491)
|.||||||. ++.+.+.|++..|+||.. |||..|+...... .
T Consensus 259 lt~~lkrfdfdy~tmhriklnd~~tfp~~-l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s 337 (1203)
T KOG4598|consen 259 LTIQLKRFDFDYNTMHRIKLNDKMTFPDV-LDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQS 337 (1203)
T ss_pred eEEeeecccccchheeeeeecccccCccc-ccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccC
Confidence 999999977 567789999999999985 9999998542100 0
Q ss_pred -------------------------CCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 455 -------------------------NEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 455 -------------------------~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
.......|+|+||.+|.|++.+|||++|+|+-.+++|
T Consensus 338 ~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w 399 (1203)
T KOG4598|consen 338 PNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRW 399 (1203)
T ss_pred cccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCce
Confidence 0113457999999999999999999999999988899
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-25 Score=238.03 Aligned_cols=256 Identities=27% Similarity=0.396 Sum_probs=197.9
Q ss_pred hcCCcCCCCcchhH--HHHHHHhCCHHHHHHHcCCCCCCCC----CChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 011215 191 HVGLNNIKETDFVN--VTIQSLMRVTPLRNFFLIPENYRHC----KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (491)
Q Consensus 191 ~~GL~NlGNTCYmN--sVLQ~L~~ip~fr~~~l~~~~~~~~----~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~ 264 (491)
+.|..|.+++|+-| +|.|.+....+++...+........ ...+...+..++...-.....-..|+|..|+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~~ 311 (587)
T KOG1864|consen 232 VFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDLI 311 (587)
T ss_pred ccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhhh
Confidence 34999999999999 9999999999988666542221111 12233333333333333222235799999999999
Q ss_pred hhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCC------------C-------------------CCCCcccCceeEEE
Q 011215 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK------------K-------------------NTSIIYECFQGELE 313 (491)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~------------~-------------------~~sii~~~F~G~l~ 313 (491)
+. +..|..+.||||+||+.++++.+.+.+.... + ....++.+|+|.+.
T Consensus 312 ~~-~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~ 390 (587)
T KOG1864|consen 312 KE-NELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILT 390 (587)
T ss_pred hc-CCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeee
Confidence 99 8999999999999999999999998764211 0 23467889999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc---
Q 011215 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET--- 390 (491)
Q Consensus 314 ~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~--- 390 (491)
.++.|..|. ..+...+.|.+++++++.. ...++..||..|..++
T Consensus 391 ~et~Clsc~---------------------t~T~~de~f~D~~~~v~~d------------e~~si~~~l~~~~~~e~l~ 437 (587)
T KOG1864|consen 391 NETRCLSCE---------------------TITSRDEGFLDLSVAVEID------------ENTSITNLLKSFSSTETLS 437 (587)
T ss_pred eeeeecccc---------------------ccccccccccccceecccc------------ccccHHHHHHHhcchhhcc
Confidence 999999997 7889999999999999842 2357888887665433
Q ss_pred ------ceeeccccceEEEEEeccCCceeEEEEeeEeecCc--eeecCCeeEeccCccccccCCCCCCCCCCCCCCCCce
Q 011215 391 ------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKY 462 (491)
Q Consensus 391 ------~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~--~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y 462 (491)
|..|...+.|.+++.|+++|.+|+||||||.+... ...|+...|.||.. |.+.........+ ..+|
T Consensus 438 g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~ple-l~l~~~~~~~~~~-----~~~Y 511 (587)
T KOG1864|consen 438 GENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLE-LRLKDTLKDDNNP-----DRKY 511 (587)
T ss_pred CCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccc-eeeccccccccCc-----ccee
Confidence 45678889999999999999999999999997632 56799999999985 7777665532111 3579
Q ss_pred EEEEEEEEec-cCCCCcEEEEEEeC
Q 011215 463 DLIANIVHDG-KPEGGFYRVFVQRK 486 (491)
Q Consensus 463 ~L~avI~H~G-~~~~GHY~~~vr~~ 486 (491)
+|+|||+|.| +++.|||+||+|..
T Consensus 512 ~L~avVvH~G~~p~~GHYia~~r~~ 536 (587)
T KOG1864|consen 512 DLVAVVVHLGSTPNRGHYVAYVKSL 536 (587)
T ss_pred eEEEEEEeccCCCCCcceEEEEeeC
Confidence 9999999999 89999999999995
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-22 Score=200.55 Aligned_cols=266 Identities=22% Similarity=0.279 Sum_probs=190.2
Q ss_pred hhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCC---CCC-CCCChHHHHHHHHHHHHHcCC----------------
Q 011215 189 IRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE---NYR-HCKSPLVHRFGDLTRKIWHAR---------------- 248 (491)
Q Consensus 189 i~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~---~~~-~~~~~l~~~l~~L~~~l~s~~---------------- 248 (491)
|..-|+.|-||-|||||+||+|+.++||.+.+-... .+. ....+++.++..+++..-+-.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 444599999999999999999999999998775322 111 224577777766665543210
Q ss_pred ----------CCCCCCCHHHHHHHHHhhccccc---CCCCCCCHHHHHHHHHHHHHHhhhcCCC----------------
Q 011215 249 ----------NFKGQVSPHEFLQAVMKASKKRF---RIGVQSNPVEFMSWLLNTLHSDLRNTKK---------------- 299 (491)
Q Consensus 249 ----------~fk~~vsP~~ll~~i~~~s~~~F---~~~~QqDA~EFL~~LLn~L~~~l~~~~~---------------- 299 (491)
.-...|-|..+...++.. ++| ..++|.||.|||.++||.||+++-...+
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~--~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~ 183 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTM--SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLIN 183 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccC--CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccc
Confidence 011234455555555543 444 3489999999999999999998642110
Q ss_pred --------------------------------------CCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCC
Q 011215 300 --------------------------------------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHD 341 (491)
Q Consensus 300 --------------------------------------~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~ 341 (491)
..+.|+++|+|++.+.+.-+.-
T Consensus 184 ~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~n-------------------- 243 (420)
T KOG1871|consen 184 NGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSN-------------------- 243 (420)
T ss_pred ccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecccc--------------------
Confidence 4677899999999998875442
Q ss_pred CCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccccee-----eccccceEEEEEeccCCceeEEE
Q 011215 342 NITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTE-----VVRPHVARMRYRVTRLPKYMILH 416 (491)
Q Consensus 342 ~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~e-----c~~~~~a~k~~~i~~lP~~Liih 416 (491)
+.+.+.+||..|.|++-... -.++.+.|..+...+... -+....+.++..+.+||++|++|
T Consensus 244 --keS~tlqPF~tlqldiq~~~------------i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilh 309 (420)
T KOG1871|consen 244 --KESATLQPFFTLQLDIQSEK------------IHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILH 309 (420)
T ss_pred --ccccccCccceeeeeeeccc------------cCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhh
Confidence 56688999999999986532 136667777776554321 22334567788999999999999
Q ss_pred EeeEeec-CceeecCCeeEeccCccccccCCCCCCCCC-CCCCCCCceEEEEEEEEec-cCCCCcEEEEEEeCCCCCC
Q 011215 417 MRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPK-ENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 417 LkRF~~~-~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~-~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~~~~~~W 491 (491)
++||.+. .....|+-..++||-. |.+..-+-.+--+ ........|+|+|+|.|.| ++..|||+.-+.+..-+.|
T Consensus 310 lkrF~ye~tgg~~k~~K~i~~~~~-l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw 386 (420)
T KOG1871|consen 310 LKRFVYEKTGGARKLGKKIEYPWT-LKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGW 386 (420)
T ss_pred hhHHHHHhccchhhhchhhhccce-eeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCce
Confidence 9999976 5688899999999975 7776544321111 1133345699999999999 7899999999998877778
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-22 Score=204.98 Aligned_cols=264 Identities=21% Similarity=0.241 Sum_probs=181.9
Q ss_pred cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCC------CChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHh
Q 011215 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC------KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMK 265 (491)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~------~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~ 265 (491)
+|+.|+|||||||+.+|+|-.+|+++..+....-.... ...++..++.+|+.+.+. ..|.|.-|++.+.+
T Consensus 106 ~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~~ 181 (473)
T KOG1872|consen 106 VGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTLSS 181 (473)
T ss_pred ccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHHHH
Confidence 49999999999999999999999999887642211111 234566677777777654 58999999999998
Q ss_pred hcccccCC------CCCCCHHHHHHHHHHHHHHhhhcCC---CCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCC
Q 011215 266 ASKKRFRI------GVQSNPVEFMSWLLNTLHSDLRNTK---KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDG 336 (491)
Q Consensus 266 ~s~~~F~~------~~QqDA~EFL~~LLn~L~~~l~~~~---~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v 336 (491)
. .|.|.- +.||||.|.+..++-.++..+.... .....+...|++.+..+..|..-..
T Consensus 182 ~-~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~------------- 247 (473)
T KOG1872|consen 182 Q-YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGED------------- 247 (473)
T ss_pred H-hHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcc-------------
Confidence 8 588865 8899999999999999998876432 2345577788888888887765320
Q ss_pred CCCCCCCceeEEeecceeeeecCCCCCCcc-cccccccCCCCCHHHHHhhcccccceeeccccceEEEEEeccCCceeEE
Q 011215 337 GDDHDNITTETSRMPFLMLGLDLPPPPLFK-DVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMIL 415 (491)
Q Consensus 337 ~~~~~~~~~s~~~e~f~~LsLdlp~~~~~k-d~~~~~~~p~vsL~~~L~~f~~~~~~ec~~~~~a~k~~~i~~lP~~Lii 415 (491)
. ......+.|..|+.-+-....+. .++ ...|.+.+.+-.. .-+..-...|.+.|.+||.||+|
T Consensus 248 -----~-~~~~~~E~~~~L~c~i~~~~~~~k~Gl------~~~~~e~~~K~s~----~lgr~a~y~k~~~isrlP~ylTv 311 (473)
T KOG1872|consen 248 -----E-GGGAGRELVDQLKCIINKTVHDMRFGL------KSGLSEEIQKISS----ILGRPAAYQKVMYISRLPEYLTV 311 (473)
T ss_pred -----c-ccccccccccccceEEeeeechhhhhh------hhhhhhhhhccCc----ccCCChHHHHHhHhhcCcccceE
Confidence 0 11112666766666554322111 000 0112222222111 11122223456789999999999
Q ss_pred EEeeEeecC--ceeecCCeeEeccCccccccCCCCCCCCC----------------------------------------
Q 011215 416 HMRRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPK---------------------------------------- 453 (491)
Q Consensus 416 hLkRF~~~~--~~~~K~~~~V~FP~~~LDL~~y~~~~~~~---------------------------------------- 453 (491)
++.||.+.. .+.-|+-..|+||.. ||.-++++++...
T Consensus 312 q~vrf~~k~k~~~~akil~~V~fP~~-ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~ 390 (473)
T KOG1872|consen 312 QEVRFFSKAKIMVVAKILNAVNFPKD-LDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGM 390 (473)
T ss_pred EEEEEEeccccchHHHHHHhccChhh-hhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccch
Confidence 999998653 356678889999985 9999888764310
Q ss_pred -----CCCCCCCceEEEEEEEEec-cCCCCcEEEEEEeCCCCCC
Q 011215 454 -----ENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 454 -----~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~~~~~~W 491 (491)
.+......|+|+|||.|.| +..+|||++++|.. .++|
T Consensus 391 ~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s-~~~w 433 (473)
T KOG1872|consen 391 YNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVS-EDKW 433 (473)
T ss_pred hccccccccccceeeeeEeeeccccccCCCcceEEEecc-CCce
Confidence 0011145699999999999 89999999999997 5588
No 39
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.66 E-value=3.8e-17 Score=126.35 Aligned_cols=62 Identities=35% Similarity=0.617 Sum_probs=54.1
Q ss_pred ccccCCC-CceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCCc
Q 011215 124 CSVSLSN-LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS 185 (491)
Q Consensus 124 Cs~~ls~-~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~~ 185 (491)
|++|.+. .++|+||+||+++||++.++||+.|+++++|+|+|++.+..||||+|+++|.++.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~~~ 63 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYDPE 63 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEESTT
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeCCC
Confidence 5666655 8999999999999999999999999999999999999999999999999999864
No 40
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.11 E-value=5.6e-11 Score=87.46 Aligned_cols=48 Identities=40% Similarity=0.639 Sum_probs=44.9
Q ss_pred ccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecCcc
Q 011215 124 CSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEK 171 (491)
Q Consensus 124 Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~ 171 (491)
|+.|.+..++|+||+||+++||++..+|++.|+.+++|+|++++.++.
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 788888889999999999999999889999999999999999999875
No 41
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.83 E-value=1.1e-08 Score=111.68 Aligned_cols=271 Identities=15% Similarity=0.124 Sum_probs=157.8
Q ss_pred hhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhc
Q 011215 188 DIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (491)
Q Consensus 188 di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s 267 (491)
.-.|.||.-=+-+-|-|++||.|..+|++|.+++. |.-....||.|.|+-||..|-.+.. ..-....|+.+++...
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~--H~C~~e~CL~CELGFLF~Ml~~S~G--~~Cqa~NFlraf~t~~ 571 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLR--HICTKEFCLLCELGFLFTMLDSSTG--DPCQANNFLRAFRTNP 571 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHc--CccchhHHHHHHHHHHHHHHhhhcC--CccchhHHHHHHhhCh
Confidence 34567998888889999999999999999999995 3344457999999999999877653 3555666766665432
Q ss_pred ccc-----cC------------------------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEc
Q 011215 268 KKR-----FR------------------------IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEI 318 (491)
Q Consensus 268 ~~~-----F~------------------------~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C 318 (491)
-.. +. ...-+|.++|.............-.-....++.++|.-+++....|
T Consensus 572 ~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~C 651 (1118)
T KOG1275|consen 572 EASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRC 651 (1118)
T ss_pred HhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhc
Confidence 100 00 0112233333222222211110000113457888999888888888
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcc--cccceeecc
Q 011215 319 PKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD--GETVTEVVR 396 (491)
Q Consensus 319 ~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~--~~~~~ec~~ 396 (491)
..|+ ..+.+......++|..|+..+. +...++..-+..|.-.|..+- ..-|..|.+
T Consensus 652 g~C~---------------------~~~~~~k~l~~~~lsyp~~~~i-d~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k 709 (1118)
T KOG1275|consen 652 GECG---------------------DEKQKSKSLLRKVLSYPNVLLI-DTLAKSNNFVEILKRSLSLFKNKQAWCETCTK 709 (1118)
T ss_pred cccc---------------------chhhhhhhhhheeecCCCccch-hhcccccchHHHhhhhhhcccccccccccccC
Confidence 8876 3333333556666766654321 211111111111111111111 122445665
Q ss_pred ccceEEEEEeccCCceeEEEEeeEeec--Cceee--cCCeeEeccCccccccCCCCC-------------CCCCCCCCCC
Q 011215 397 PHVARMRYRVTRLPKYMILHMRRFTKN--NFFVE--KNPTLVNFPVKNLELKDYIPL-------------PTPKENEKLR 459 (491)
Q Consensus 397 ~~~a~k~~~i~~lP~~LiihLkRF~~~--~~~~~--K~~~~V~FP~~~LDL~~y~~~-------------~~~~~~~~~~ 459 (491)
......+..+..||.+|.|...-+... +|... |.-..|-+|.. +-|..--.. +.+...++.-
T Consensus 710 ~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~-~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~ 788 (1118)
T KOG1275|consen 710 PEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEW-FHMIISKNKAQLVSTISDLDVSPLPDYDEPSA 788 (1118)
T ss_pred CCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchh-eeEEEecccceeeeeeccccCCCCccccCCce
Confidence 555555667999999999988876643 23222 33445666653 444322110 1111123444
Q ss_pred CceEEEEEEEEecc-CCCCcEEEEEEe
Q 011215 460 SKYDLIANIVHDGK-PEGGFYRVFVQR 485 (491)
Q Consensus 460 ~~Y~L~avI~H~G~-~~~GHY~~~vr~ 485 (491)
.+|+|-|+|+|.|. -+.+|++++|+-
T Consensus 789 ~vYeL~a~V~~I~d~~~e~~lVs~Ikv 815 (1118)
T KOG1275|consen 789 VVYELDAMVHAIGDNENEVNLVSPIKV 815 (1118)
T ss_pred EEEEeeeEEEEeccCCCccceEEEEEc
Confidence 78999999999995 588999999984
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.76 E-value=3.1e-09 Score=108.29 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=57.5
Q ss_pred CCccccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceec
Q 011215 120 FEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI 181 (491)
Q Consensus 120 ~~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v 181 (491)
..+.|..|....|||+||.||.++|||...+||..|+.+++|...+.|+|.+||-|+-+.+|
T Consensus 227 e~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYV 288 (493)
T KOG0804|consen 227 ESSLCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYV 288 (493)
T ss_pred hhhhhhhhcccccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhh
Confidence 46778888888999999999999999999999999999999999999999999999976666
No 43
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=98.33 E-value=6.6e-08 Score=97.18 Aligned_cols=167 Identities=19% Similarity=0.053 Sum_probs=117.9
Q ss_pred Cccccc-cCCCCcccccccccccccCCCCCCCCCCCCCCCCcCCCCCCCCchhhhcCCC--------CCCCCccCCCCCC
Q 011215 1 MTKKRK-NNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGGR--------GDSGAKVGQNGRT 71 (491)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 71 (491)
|+++|. ..+.-.....+++.++.+-++++|..++..+ +.+.|.++++++.+-+.... +++.......++
T Consensus 1 m~~k~~~~~~~~~~yldtv~r~vldfd~ek~c~vslsn-LnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~te- 78 (442)
T KOG2026|consen 1 MKVKKIKKQEPNYAYLETVVRRVLDFDFEKPCSVSLSN-LNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTE- 78 (442)
T ss_pred CccchhcccCcchHhhhhhhhhhccccCCCCCcccccc-cceeeeeeeCchhhCcCccccchhccccccccceeccccc-
Confidence 666666 3333344666788888888888989999887 99999998888777222111 122222333332
Q ss_pred CCCCCCCCC-cchhhhhCCCCCCccccccccCC-CCcchhcccc---cccCCCCCccccccCCCCceEEecccCcccccC
Q 011215 72 GEDDDEDKD-EDEDDLANGYGQGQRSRLVEVRR-DCPYLDTVNR---QVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGR 146 (491)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~c~~l~ti~r---~~l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr 146 (491)
.....+++ ++++++.. +..+....+..++ .||+||++|| .+||++..--|.|.|+|++.+.|..|+++..++
T Consensus 79 -lkfyvlpe~~ei~d~s~--~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~ 155 (442)
T KOG2026|consen 79 -LKFYVLPENYEIDDPSL--GDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSH 155 (442)
T ss_pred -eeEEecchhccccCchh--hhhhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhc
Confidence 22333332 22334443 4455666666666 9999999999 789999999999999999999999999999999
Q ss_pred CCCChhcccccccCCcEEEEecCcceeecC
Q 011215 147 GQKSHAYTHSLEAGHHVYINLRTEKVYCLP 176 (491)
Q Consensus 147 ~~~sha~~H~~~~~H~v~v~l~t~~vyc~~ 176 (491)
-...+++.|..+. +.+..+..|+|++
T Consensus 156 v~PlRnyFl~~~n----~~d~~~~lv~rl~ 181 (442)
T KOG2026|consen 156 VVPLRNYFLLEEN----YFDNLTELVQRLG 181 (442)
T ss_pred cchhhhhhccccc----ccchhHHHHHHHH
Confidence 8888999988764 4556667777765
No 44
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.44 E-value=0.00055 Score=66.24 Aligned_cols=217 Identities=15% Similarity=0.209 Sum_probs=114.7
Q ss_pred cCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHH---HHHcCCCCCCC-------CCHHHHHHHH-
Q 011215 195 NNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTR---KIWHARNFKGQ-------VSPHEFLQAV- 263 (491)
Q Consensus 195 ~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~---~l~s~~~fk~~-------vsP~~ll~~i- 263 (491)
+|.-|.|++-++|-+|.|...+|+-.-.. .....++..+|..-.. ++.+... ++. ..|.+.+..+
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~---~~~e~s~~~~L~~~Y~qa~~ll~~~q-~~~~~~~~~~~~~~~~l~~ae 81 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTEL---CSKEESVFWRLFTKYNQANKLLHTCQ-LDGVKDDDCKKVPSEILAKAE 81 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhh---ccccccHHHHHHHHHHHHHHHHHhhh-hcCCCCcccccCchHHHHHHH
Confidence 68889999999999999999999988631 1123344444432222 1221110 111 1122222111
Q ss_pred ----------Hhhccccc--CCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCC
Q 011215 264 ----------MKASKKRF--RIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTE 331 (491)
Q Consensus 264 ----------~~~s~~~F--~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~ 331 (491)
...-.|.. ..|.+.-|..-|-.||. ....+.++|.-.+.-...|..|+..-.
T Consensus 82 ~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk-----------~d~~~E~lF~~sf~WeFeC~~Cg~~~~----- 145 (275)
T PF15499_consen 82 TCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLK-----------LDPWIEKLFLYSFSWEFECSQCGHKYQ----- 145 (275)
T ss_pred HHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHh-----------cchHHHhHhheeeEEEEEccccCChhh-----
Confidence 11101111 12333333333333321 245678999999999999999984200
Q ss_pred CCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccceeeccccceEEEEEeccCCc
Q 011215 332 KGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPK 411 (491)
Q Consensus 332 ~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~ec~~~~~a~k~~~i~~lP~ 411 (491)
. ....+...|..+ +|.-. + |+.-.-..|..|..+ ..++++.+.++|+
T Consensus 146 ----------~-R~~K~L~TFtnv---~pdwh--------------P----LnA~h~~pCn~C~~k-sQ~rkMvlekv~~ 192 (275)
T PF15499_consen 146 ----------N-RCTKTLVTFTNV---IPDWH--------------P----LNAVHFGPCNSCNSK-SQRRKMVLEKVPP 192 (275)
T ss_pred ----------h-hheeeecccCCC---CCCCC--------------c----ccccccCCCcccCCh-HHhHhhhhhcCch
Confidence 0 122233333322 22210 0 111111234455443 2356788999999
Q ss_pred eeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 412 YMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 412 ~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
++++|+. .+ .|-. ||..|--. -....|.+.+||-..-. -.|++++++++ +|.|
T Consensus 193 vfmLHFV-----eG----------LP~n--dl~~ysF~-------feg~~Y~Vt~VIQY~~~--~~HFvtWi~~~-dGsW 245 (275)
T PF15499_consen 193 VFMLHFV-----EG----------LPHN--DLQHYSFH-------FEGCLYQVTSVIQYQAN--LNHFVTWIRDS-DGSW 245 (275)
T ss_pred hhhhhhh-----cc----------CCcc--CCCcccee-------ecCeeEEEEEEEEEecc--CceeEEEEEcC-CCCe
Confidence 9999954 11 2211 22222210 01245999999998764 58999999998 7888
No 45
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0015 Score=71.69 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=60.7
Q ss_pred CcCCCCcchhHHHHHHHhCCHHHHHHHcCCCC-----CCCC------CChHH---HHHHHH---HHHHHcCCCCCCCCCH
Q 011215 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHC------KSPLV---HRFGDL---TRKIWHARNFKGQVSP 256 (491)
Q Consensus 194 L~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~------~~~l~---~~l~~L---~~~l~s~~~fk~~vsP 256 (491)
|.|.||+||.|++||+|..+|+|+-.+..... .... ..... +.+... +++. +...-.-.++-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 89999999999999999999999976653211 0111 11111 111111 1111 11110112344
Q ss_pred HHHHHHHHhhc--ccccCCCCCCCHHHHHHHHHHHHHHhhh
Q 011215 257 HEFLQAVMKAS--KKRFRIGVQSNPVEFMSWLLNTLHSDLR 295 (491)
Q Consensus 257 ~~ll~~i~~~s--~~~F~~~~QqDA~EFL~~LLn~L~~~l~ 295 (491)
+.+.+...... ...|....|+||++|+.-|+-.+...++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 55555544331 2458889999999999999988887665
No 46
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=96.56 E-value=0.03 Score=56.95 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCcCC---CCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhccc
Q 011215 193 GLNNI---KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269 (491)
Q Consensus 193 GL~Nl---GNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~ 269 (491)
|+.=| -|+||+||++-+|=++.. .+ ..+ .+..+..++..+ .|..|...+-.. .
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~---------~f---~~~---~l~~aw~~f~~G-------~~~~fVa~~Ya~--~ 156 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKI---------KF---KSP---GLDEAWNEFKAG-------DPAPFVAWCYAS--T 156 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST-----------B---SSH---HHHHHHHHHHTT---------HHHHHHHHHH--T
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCC---------cc---CCH---HHHHHHHHHhCC-------ChHHHHHHHHHH--c
Confidence 54444 499999999987755421 00 121 233444444444 467777776554 3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHH
Q 011215 270 RFRIGVQSNPVEFMSWLLNTLHS 292 (491)
Q Consensus 270 ~F~~~~QqDA~EFL~~LLn~L~~ 292 (491)
.+..++..||+++|..||+.++.
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCCCcCHHHHHHHHHHhccc
Confidence 46678999999999999987664
No 47
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=86.78 E-value=0.54 Score=42.54 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=29.9
Q ss_pred CCCceEEecccCcccc-cCC--CCChhcccccccCCc-EEEEecC----cceeecCCce
Q 011215 129 SNLNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHH-VYINLRT----EKVYCLPDGY 179 (491)
Q Consensus 129 s~~nl~~CL~CG~~~~-Gr~--~~sha~~H~~~~~H~-v~v~l~t----~~vyc~~c~~ 179 (491)
...-|--|++|+|.|| |+| ..||...|-..+.|. |-+.-.+ ..+.||.|+.
T Consensus 10 ~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~ 68 (152)
T PF09416_consen 10 DPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGS 68 (152)
T ss_dssp -CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT--
T ss_pred CcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCC
Confidence 4478999999999999 554 488999999888775 3333322 4678998865
No 48
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=86.07 E-value=0.41 Score=44.36 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=19.6
Q ss_pred hhcCCcCCCCcchhHHHHHHHh--CCHHHHHHHc
Q 011215 190 RHVGLNNIKETDFVNVTIQSLM--RVTPLRNFFL 221 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~--~ip~fr~~~l 221 (491)
.++|+.|-+|||++||++|.+- ..|-|-.++.
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred EEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 4559999999999999999874 3444444443
No 49
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=0.25 Score=55.18 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=45.4
Q ss_pred EEEeccCCceeEEEEeeEeecCceeecC--CeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEE
Q 011215 403 RYRVTRLPKYMILHMRRFTKNNFFVEKN--PTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYR 480 (491)
Q Consensus 403 ~~~i~~lP~~LiihLkRF~~~~~~~~K~--~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~ 480 (491)
...|.+.|+|.+|.+. ++++. .+|- .|...+. .++|++..... +.....+|+|+++|.-... .++|.
T Consensus 675 ~h~is~~P~vftIvle-wEk~E--Te~eI~~T~~aL~-teidis~~y~~-----g~ep~t~yrLVSmv~~~e~--~~~~~ 743 (806)
T KOG1887|consen 675 HHILSPCPPVFTIVLE-WEKSE--TEKEISETTKALA-TEIDISRLYRE-----GLEPNTKYRLVSMVGNHEE--GEEYI 743 (806)
T ss_pred hhhcCCCCCeeEeeee-hhccc--chHHHHHHHHHHH-hhhhHHHHhhh-----ccCcCceeEEEEEeeeccc--cceEE
Confidence 4568999999999655 22221 1111 1112222 23666654421 1112477999999976632 68999
Q ss_pred EEEEeCCCCCC
Q 011215 481 VFVQRKSEELW 491 (491)
Q Consensus 481 ~~vr~~~~~~W 491 (491)
|+.+. .+.|
T Consensus 744 C~Aye--~Nrw 752 (806)
T KOG1887|consen 744 CFAYE--PNRW 752 (806)
T ss_pred Eeecc--CCcc
Confidence 99998 4777
No 50
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=61.19 E-value=19 Score=38.86 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=26.6
Q ss_pred EEeccCCceeEEEEeeEeecCceeecCCeeEeccC
Q 011215 404 YRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPV 438 (491)
Q Consensus 404 ~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~ 438 (491)
.+++..|..+||++-||.++..-..|+-..+..|+
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~V 550 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPV 550 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeec
Confidence 45788899999999999977655566666666554
No 51
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=57.28 E-value=5.8 Score=26.49 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=11.8
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
+|.|.+||..+-|.
T Consensus 2 ~~~C~~CG~i~~g~ 15 (34)
T cd00729 2 VWVCPVCGYIHEGE 15 (34)
T ss_pred eEECCCCCCEeECC
Confidence 69999999777665
No 52
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.38 E-value=9.2 Score=25.24 Aligned_cols=14 Identities=50% Similarity=1.184 Sum_probs=11.3
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.|.|.+||..+.+.
T Consensus 1 ~~~C~~CGy~y~~~ 14 (33)
T cd00350 1 KYVCPVCGYIYDGE 14 (33)
T ss_pred CEECCCCCCEECCC
Confidence 49999999777664
No 53
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=45.05 E-value=15 Score=40.88 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=35.1
Q ss_pred CceEEecccCcccc-cCCC--CChhcccccccCCcEE-EEe----cCcceeecCCcee
Q 011215 131 LNVYACLVCGKYYQ-GRGQ--KSHAYTHSLEAGHHVY-INL----RTEKVYCLPDGYE 180 (491)
Q Consensus 131 ~nl~~CL~CG~~~~-Gr~~--~sha~~H~~~~~H~v~-v~l----~t~~vyc~~c~~~ 180 (491)
.++--|.+|||-|| ||++ .+|...|-..+.|... +.- +...+-||.|+..
T Consensus 72 ~~v~kc~~c~Kwfcn~r~gtsgshIv~hlvra~hk~v~lh~ds~lget~lecyncg~~ 129 (935)
T KOG1802|consen 72 ACVIKCNTCGKWFCNSRGGTSGSHIVNHLVRAKHKEVSLHKDSPLGETVLECYNCGSR 129 (935)
T ss_pred hheeeccccCceeecCCCCCchhHHHHHHHHhhhheeEeccCCCCCcceEEeeccCcc
Confidence 47888999999999 4443 6799999888877432 222 2245788888754
No 54
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=39.05 E-value=18 Score=23.18 Aligned_cols=19 Identities=37% Similarity=0.927 Sum_probs=14.0
Q ss_pred EEecccCcccccCCCCChh
Q 011215 134 YACLVCGKYYQGRGQKSHA 152 (491)
Q Consensus 134 ~~CL~CG~~~~Gr~~~sha 152 (491)
+-|+.|++.|.|..-.+|.
T Consensus 1 ~sCiDC~~~F~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDFDGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEEEGGGTTT--
T ss_pred CeeecCCCCcCcCCcCCCC
Confidence 4699999999887666664
No 55
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=37.71 E-value=15 Score=40.73 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=30.9
Q ss_pred CCCceEEecccCcccccCCCCChhcccccccCCcEEEEecC
Q 011215 129 SNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRT 169 (491)
Q Consensus 129 s~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t 169 (491)
+..-||+||.|=.-|++ -|...|+.+++|.+|+.++.
T Consensus 36 ~e~glyicl~~f~afg~----~~v~~~f~~tg~~~yl~i~r 72 (763)
T KOG0944|consen 36 SEGGLYICLNCFLAFGR----EHVEEYFRKTGHSVYLHIAR 72 (763)
T ss_pred CCCCEEeehhhhhhhhh----HHHHHHHhhcCceEEEEecc
Confidence 45789999999655544 49999999999999999975
No 56
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.00 E-value=29 Score=41.18 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 011215 281 EFMSWLLNTLH 291 (491)
Q Consensus 281 EFL~~LLn~L~ 291 (491)
+||.|.+..|.
T Consensus 2113 DaLhY~hSLlR 2123 (3015)
T KOG0943|consen 2113 DALHYAHSLLR 2123 (3015)
T ss_pred hHHHHHHHHHH
Confidence 34444444433
No 57
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=35.23 E-value=12 Score=33.43 Aligned_cols=26 Identities=35% Similarity=0.743 Sum_probs=21.3
Q ss_pred CCccccccCCCCceEEecccCcccccC
Q 011215 120 FEKFCSVSLSNLNVYACLVCGKYYQGR 146 (491)
Q Consensus 120 ~~k~Cs~~ls~~nl~~CL~CG~~~~Gr 146 (491)
.-+.|+||. ....|.|..||.-+|.-
T Consensus 117 ~r~fCaVCG-~~S~ysC~~CG~kyCsv 142 (156)
T KOG3362|consen 117 LRKFCAVCG-YDSKYSCVNCGTKYCSV 142 (156)
T ss_pred cchhhhhcC-CCchhHHHhcCCceeec
Confidence 347899997 58999999999777743
No 58
>PF03117 Herpes_UL49_1: UL49 family; InterPro: IPR004339 UL49 proteins are present in the viral tegument at the surface of the nucleocapsid []. Many of the nonconserved tegument proteins of alpha-herpes viruses play important roles during different steps of the viral replication cycle, such as the shutoff of host cell functions by the vhs protein encoded by UL41 and the transcriptional activation of viral immediate-early genes by the UL48 gene product, VP16. UL49 of Human herpesvirus 1 (HHV-1) has been shown to directly interact with VP16. The UL49 gene products of HHV-1 and Bovine herpesvirus 1 exhibit virus-independent intercellular trafficking of unknown biological function but are dispensable for productive viral replication. Envelope glycoprotein M (gM) and the complex formed by glycoproteins E (gE) and I (gI) are involved in the secondary envelopment of Suid herpesvirus 1 (Pseudorabies virus, PrV) particles in the cytoplasm of infected cells. In the absence of the gE-gI complex and gM, envelopment is blocked and capsids surrounded by tegument proteins accumulate in the cytoplasm. The cytoplasmic domains of gE and gM specifically interact with the C-terminal part of the UL49 gene product of PrV suggesting a role for the protein in secondary envelopment during herpesvirus virion maturation [].; GO: 0016032 viral reproduction, 0019033 viral tegument
Probab=32.34 E-value=43 Score=32.78 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=32.5
Q ss_pred cccccCCC--CceEEecccCcccc---cCCC--C------ChhcccccccCCcEEEEecCcceeecCCcee
Q 011215 123 FCSVSLSN--LNVYACLVCGKYYQ---GRGQ--K------SHAYTHSLEAGHHVYINLRTEKVYCLPDGYE 180 (491)
Q Consensus 123 ~Cs~~ls~--~nl~~CL~CG~~~~---Gr~~--~------sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~ 180 (491)
.|...... .-.-+|+.|| +| |++. + +|.+.--.+..-.+-+...|+.+||.-|+..
T Consensus 93 kc~r~~~~~~~~aVvC~~CG--hCLN~GK~K~~~~~~F~pts~FY~RDqkEK~v~~c~~tgriyCS~CGS~ 161 (245)
T PF03117_consen 93 KCERYKKPRSYRAVVCMECG--HCLNFGKGKLKCGQNFPPTSMFYYRDQKEKQVIYCATTGRIYCSLCGSQ 161 (245)
T ss_pred hhHhhcCCCCeEEEEeccCC--chhhccchhhccccCcCCcceeEeccccceeEEEeccCCCEEEccCCCC
Confidence 34444433 4566799999 44 5431 1 1221111223345667888999999999854
No 59
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=27.98 E-value=29 Score=32.05 Aligned_cols=13 Identities=46% Similarity=1.035 Sum_probs=11.2
Q ss_pred eEEecccCccccc
Q 011215 133 VYACLVCGKYYQG 145 (491)
Q Consensus 133 l~~CL~CG~~~~G 145 (491)
+|+|.+||...-|
T Consensus 134 ~~vC~vCGy~~~g 146 (166)
T COG1592 134 VWVCPVCGYTHEG 146 (166)
T ss_pred EEEcCCCCCcccC
Confidence 9999999976665
No 60
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=26.19 E-value=11 Score=35.81 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=0.0
Q ss_pred eEEecccC-cccccCCCCChhcccccccCCc
Q 011215 133 VYACLVCG-KYYQGRGQKSHAYTHSLEAGHH 162 (491)
Q Consensus 133 l~~CL~CG-~~~~Gr~~~sha~~H~~~~~H~ 162 (491)
-|-|=.|| ..|-|| --.-.||.+..|.
T Consensus 101 ey~CEICGN~~Y~Gr---kaFekHF~E~rH~ 128 (196)
T PF11931_consen 101 EYKCEICGNQSYKGR---KAFEKHFQEWRHA 128 (196)
T ss_dssp -------------------------------
T ss_pred eeeeEeCCCcceecH---HHHHHhcChhHHH
Confidence 46677788 345566 3456899888883
No 61
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=24.67 E-value=25 Score=29.34 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=4.6
Q ss_pred chhccccc
Q 011215 107 YLDTVNRQ 114 (491)
Q Consensus 107 ~l~ti~r~ 114 (491)
|+.++-|.
T Consensus 52 ~~~~v~rY 59 (101)
T PF09026_consen 52 YFTMVKRY 59 (101)
T ss_dssp HHHHHHHH
T ss_pred hcchHhhh
Confidence 66666554
No 62
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.72 E-value=30 Score=37.64 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=46.4
Q ss_pred CccccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCCchhhhhhcCCcCCCCc
Q 011215 121 EKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKET 200 (491)
Q Consensus 121 ~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~~L~di~~~GL~NlGNT 200 (491)
-+.+++......-+.|.+|+-+.++...+ |..|+..+.-..-......|+.+.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
T KOG1867|consen 31 PKRKDARILPLKTINCGTCGVLQIRLAVP------------------------CLICDSLGCLSNSHKLEHSGNKKHNNT 86 (492)
T ss_pred ccccchhhcccccceeEEechhhhhhccc------------------------ceechhccccccccccccccccccccc
Confidence 45677777778888899998554433111 333333221111122234589999999
Q ss_pred chhHHHHHHHhCCHHH
Q 011215 201 DFVNVTIQSLMRVTPL 216 (491)
Q Consensus 201 CYmNsVLQ~L~~ip~f 216 (491)
|+||+.+|.++.++.|
T Consensus 87 ~~~~~g~~~~~~c~~~ 102 (492)
T KOG1867|consen 87 IDVNNGLLYCFACPDF 102 (492)
T ss_pred ceeehhhheeccCCcE
Confidence 9999999999998854
No 63
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=21.27 E-value=1.1e+02 Score=20.22 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=3.6
Q ss_pred EEecccCc
Q 011215 134 YACLVCGK 141 (491)
Q Consensus 134 ~~CL~CG~ 141 (491)
+.|..||.
T Consensus 22 ~~C~~Cg~ 29 (33)
T PF08792_consen 22 EVCIFCGS 29 (33)
T ss_pred EEcccCCc
Confidence 44444443
No 64
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=20.98 E-value=59 Score=22.73 Aligned_cols=43 Identities=28% Similarity=0.491 Sum_probs=27.5
Q ss_pred EecccCcccccC-CCCChhcccccccCCcEEEEecCcceeecCC
Q 011215 135 ACLVCGKYYQGR-GQKSHAYTHSLEAGHHVYINLRTEKVYCLPD 177 (491)
Q Consensus 135 ~CL~CG~~~~Gr-~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c 177 (491)
.|-.||....=+ |...--..|..-.+.+++|.+...++.|-.|
T Consensus 4 ~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~C~~C 47 (47)
T PF14690_consen 4 RCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYRCKNC 47 (47)
T ss_pred cCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEECcCC
Confidence 577888332111 2233344455566789999999888888765
No 65
>PF03048 Herpes_UL92: UL92 family; InterPro: IPR004289 Members of this family are functionally uncharacterised proteins from herpesviruses. The N terminus of these proteins contain 6 conserved cysteines and histidines that might form a zinc binding domain.
Probab=20.74 E-value=74 Score=30.11 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCceEEecccCcccccCCCCChhcccc------cccCCcEEEEecCcceeecC
Q 011215 130 NLNVYACLVCGKYYQGRGQKSHAYTHS------LEAGHHVYINLRTEKVYCLP 176 (491)
Q Consensus 130 ~~nl~~CL~CG~~~~Gr~~~sha~~H~------~~~~H~v~v~l~t~~vyc~~ 176 (491)
-.|||+|..||+|..--|...-...+. .-+|+.+.-++......+.+
T Consensus 17 v~~vfvC~~c~~~HVCD~~~eC~iv~T~Eg~VC~~TG~c~~~~l~~~~~~~~~ 69 (192)
T PF03048_consen 17 VGNVFVCEKCGRYHVCDGGCECVIVNTGEGLVCTITGLCFDRNLQPSEMEPDE 69 (192)
T ss_pred CceEEEeCCCCCEEecCCCCCEEEEeCCCcCEEEecccCcccccCccccCCCC
Confidence 369999999998876555444444332 23566666666555544443
No 66
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=20.38 E-value=1.9e+02 Score=31.34 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=31.5
Q ss_pred cccccCCC-----CceEEecccC-cccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCC
Q 011215 123 FCSVSLSN-----LNVYACLVCG-KYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDP 184 (491)
Q Consensus 123 ~Cs~~ls~-----~nl~~CL~CG-~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~ 184 (491)
.|.|||.. ..+.-|-.|| .+.-||.+-. -.-++..+- -...|..-||-+|-+-|.-|
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~--dn~si~s~~---s~~stepWfCeaC~~Gvs~P 183 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVL--DNVSIPSGS---SDCSTEPWFCEACLYGVSLP 183 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccc--cccccCCCC---ccCCCCchhhhhHhcCCCCC
Confidence 78888753 3456688888 3444554322 111111110 11235778999999988754
No 67
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.26 E-value=54 Score=19.02 Aligned_cols=12 Identities=42% Similarity=1.243 Sum_probs=9.2
Q ss_pred EEecccCccccc
Q 011215 134 YACLVCGKYYQG 145 (491)
Q Consensus 134 ~~CL~CG~~~~G 145 (491)
|.|-.||+.|-.
T Consensus 1 y~C~~C~~~f~~ 12 (23)
T PF00096_consen 1 YKCPICGKSFSS 12 (23)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCccCC
Confidence 678889987753
No 68
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.10 E-value=42 Score=25.44 Aligned_cols=20 Identities=35% Similarity=0.933 Sum_probs=14.9
Q ss_pred ccccCCCCceEEecccCccccc
Q 011215 124 CSVSLSNLNVYACLVCGKYYQG 145 (491)
Q Consensus 124 Cs~~ls~~nl~~CL~CG~~~~G 145 (491)
|..|--..|.|.|-.|| |.|
T Consensus 39 C~~CRk~~~~Y~CP~CG--F~G 58 (59)
T PRK14890 39 CEKCRKQSNPYTCPKCG--FEG 58 (59)
T ss_pred chhHHhcCCceECCCCC--CcC
Confidence 55554556999999999 665
Done!