Query 011215
Match_columns 491
No_of_seqs 311 out of 1836
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 03:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 100.0 1.5E-67 5E-72 595.1 33.1 321 102-449 193-624 (854)
2 3mhs_A Ubiquitin carboxyl-term 100.0 2.6E-67 9E-72 560.7 26.3 329 123-491 50-444 (476)
3 2y6e_A Ubiquitin carboxyl-term 100.0 6.7E-55 2.3E-59 449.8 25.7 273 190-491 7-329 (367)
4 2gfo_A Ubiquitin carboxyl-term 100.0 8.5E-54 2.9E-58 446.6 25.1 261 190-491 61-366 (396)
5 3nhe_A Ubiquitin carboxyl-term 100.0 5.8E-53 2E-57 430.1 24.4 263 190-491 8-313 (348)
6 3i3t_A Ubiquitin carboxyl-term 100.0 1.6E-52 5.6E-57 427.9 22.0 263 190-491 2-321 (355)
7 1nb8_A Ubiquitin carboxyl-term 100.0 2.3E-50 7.9E-55 414.4 25.0 255 190-491 5-270 (353)
8 2ayn_A Ubiquitin carboxyl-term 100.0 5.5E-51 1.9E-55 425.1 17.9 262 190-491 13-357 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 5.9E-50 2E-54 419.5 21.1 257 191-491 24-377 (415)
10 2f1z_A Ubiquitin carboxyl-term 100.0 1.6E-47 5.4E-52 412.8 23.6 257 188-491 172-439 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.9 1.1E-25 3.8E-30 226.8 11.2 95 192-292 10-113 (374)
12 3c5k_A HD6, histone deacetylas 99.9 1E-23 3.6E-28 178.8 7.9 91 102-192 4-95 (109)
13 2uzg_A Ubiquitin carboxyl-term 99.8 5.9E-22 2E-26 164.9 3.9 87 102-188 3-96 (97)
14 2g45_A Ubiquitin carboxyl-term 99.8 2E-20 6.8E-25 163.0 6.7 92 102-194 12-119 (129)
15 2ida_A Hypothetical protein; z 99.6 1.1E-16 3.8E-21 133.0 5.6 80 103-185 3-89 (102)
16 2i50_A Ubiquitin carboxyl-term 99.5 2.5E-15 8.5E-20 130.6 4.6 85 102-186 4-111 (126)
17 3mp2_A Non-structural protein 96.5 0.028 9.5E-07 52.3 12.0 61 198-287 20-80 (211)
18 2fe8_A PP1AB, ORF1AB, replicas 95.3 0.19 6.6E-06 49.6 12.9 71 193-287 101-174 (315)
19 2xzl_A ATP-dependent helicase 81.4 0.86 2.9E-05 51.0 3.8 51 129-179 21-79 (802)
20 2wjy_A Regulator of nonsense t 70.9 2.1 7.2E-05 47.8 3.2 58 122-179 7-74 (800)
21 3ihp_A Ubiquitin carboxyl-term 64.8 4.2 0.00014 45.7 4.0 37 128-168 57-93 (854)
22 1qmy_A Protease, leader protea 60.2 4.1 0.00014 35.1 2.2 22 191-212 13-34 (167)
23 3by4_A OTU1, ubiquitin thioest 38.6 6.5 0.00022 36.4 0.0 29 133-164 180-208 (212)
24 3c5t_B Exendin-4, exenatide; l 29.4 21 0.0007 22.6 1.2 13 278-290 10-22 (31)
25 2lvu_A Zinc finger and BTB dom 35.3 12 0.00039 20.8 0.0 14 133-146 2-15 (26)
26 6rxn_A Rubredoxin; electron tr 28.0 21 0.00071 24.7 1.1 13 132-144 3-15 (46)
27 1wg2_A Zinc finger (AN1-like) 25.4 35 0.0012 25.3 2.0 13 133-146 29-41 (64)
28 2lvt_A Zinc finger and BTB dom 30.9 15 0.00052 20.8 0.0 14 133-146 2-15 (29)
29 2lvr_A Zinc finger and BTB dom 29.8 16 0.00056 20.6 0.0 14 133-146 3-16 (30)
30 1fv5_A First zinc finger of U- 23.3 29 0.00098 22.2 1.1 18 128-145 3-20 (36)
31 1wfh_A Zinc finger (AN1-like) 23.2 42 0.0014 24.8 2.1 13 133-146 29-41 (64)
32 4ayb_P DNA-directed RNA polyme 23.0 18 0.00062 25.0 0.1 13 132-144 2-14 (48)
33 1yk4_A Rubredoxin, RD; electro 21.9 34 0.0012 24.1 1.4 14 133-146 2-15 (52)
34 1t5q_A Gastric inhibitory poly 21.6 45 0.0016 20.8 1.7 14 276-289 16-29 (30)
35 2v3b_B Rubredoxin 2, rubredoxi 20.8 37 0.0013 24.2 1.4 15 132-146 2-16 (55)
36 1lko_A Rubrerythrin all-iron(I 20.3 33 0.0011 30.9 1.3 15 132-146 154-168 (191)
37 2c1m_B Nucleoporin 50 kDa; pro 20.2 44 0.0015 23.1 1.6 11 16-26 1-11 (46)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-67 Score=595.11 Aligned_cols=321 Identities=18% Similarity=0.266 Sum_probs=271.4
Q ss_pred CCCCcchhcccccccC---CCCCccccccCCCCceEEecccCcccccC------CCCChhcccccccCCcEEEEecC---
Q 011215 102 RRDCPYLDTVNRQVLD---FDFEKFCSVSLSNLNVYACLVCGKYYQGR------GQKSHAYTHSLEAGHHVYINLRT--- 169 (491)
Q Consensus 102 ~~~c~~l~ti~r~~l~---fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr------~~~sha~~H~~~~~H~v~v~l~t--- 169 (491)
+..|+|+.+|.+.... ......|+.|++..|+|+||+||+++||| |+++||+.|+.+++|+|+|+|+|
T Consensus 193 ~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~ 272 (854)
T 3ihp_A 193 RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP 272 (854)
T ss_dssp CCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred CCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCC
Confidence 4789999988542211 12235899999999999999999998886 45999999999999999999999
Q ss_pred --cceeecCCceeccCCchhhhh------------------------------------------------hcCCcCCCC
Q 011215 170 --EKVYCLPDGYEINDPSLEDIR------------------------------------------------HVGLNNIKE 199 (491)
Q Consensus 170 --~~vyc~~c~~~v~d~~L~di~------------------------------------------------~~GL~NlGN 199 (491)
++||||+|+++|.|+.|++++ ++||.|+||
T Consensus 273 ~~~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~GL~NlGN 352 (854)
T 3ihp_A 273 DGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGN 352 (854)
T ss_dssp TBCCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------CCCSTTCCCBCCCSS
T ss_pred CCCeEEEccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccccccCCCccceEecCC
Confidence 999999999999999877632 129999999
Q ss_pred cchhHHHHHHHhCCHHHHHHHcCCC------CCCCCCChHHHHHHHHHHHHHcCC------------------CCCCCCC
Q 011215 200 TDFVNVTIQSLMRVTPLRNFFLIPE------NYRHCKSPLVHRFGDLTRKIWHAR------------------NFKGQVS 255 (491)
Q Consensus 200 TCYmNsVLQ~L~~ip~fr~~~l~~~------~~~~~~~~l~~~l~~L~~~l~s~~------------------~fk~~vs 255 (491)
|||||||||+|+|+|+||++|+... .......++.++|++|++.||+++ .++..|+
T Consensus 353 TCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~is 432 (854)
T 3ihp_A 353 SCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIA 432 (854)
T ss_dssp CHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBC
T ss_pred ceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccC
Confidence 9999999999999999999998421 122345689999999999999865 3466899
Q ss_pred HHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCC
Q 011215 256 PHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD 335 (491)
Q Consensus 256 P~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~ 335 (491)
|.+|+++++.. ++.|.+++||||+|||.+||+.|+++++. .++|.++|+|++.++++|..|+
T Consensus 433 P~~f~~~l~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~~----~s~i~~lF~G~l~s~i~C~~C~------------- 494 (854)
T 3ihp_A 433 PRMFKALIGKG-HPEFSTNRQQDAQEFFLHLINMVERNCRS----SENPNEVFRFLVEEKIKCLATE------------- 494 (854)
T ss_dssp CHHHHHHHTTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCTT----SCCGGGGTCEEEEEEEEETTTT-------------
T ss_pred hHHHHHHHhhh-ccccccccccCHHHHHHHHHHHHHHHhcc----cCCchhhcCceEEEEEEecCCC-------------
Confidence 99999999988 79999999999999999999999998854 4679999999999999999997
Q ss_pred CCCCCCCCceeEEeecceeeeecCCCCCCcccc------------------cccccCCCCCHHHHHhhccccccee----
Q 011215 336 GGDDHDNITTETSRMPFLMLGLDLPPPPLFKDV------------------MEKNIIPQVPLFNILKKFDGETVTE---- 393 (491)
Q Consensus 336 v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~------------------~~~~~~p~vsL~~~L~~f~~~~~~e---- 393 (491)
.++++.++|+.|+|+||..+..... ...++.++++|++||+.|++.+..+
T Consensus 495 --------~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C 566 (854)
T 3ihp_A 495 --------KVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWS 566 (854)
T ss_dssp --------EEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEE
T ss_pred --------CEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeeeeec
Confidence 8899999999999999975433210 1123567799999999999877544
Q ss_pred --eccccceEEEEEeccCCceeEEEEeeEeec-CceeecCCeeEeccCccccccCCCCC
Q 011215 394 --VVRPHVARMRYRVTRLPKYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPL 449 (491)
Q Consensus 394 --c~~~~~a~k~~~i~~lP~~LiihLkRF~~~-~~~~~K~~~~V~FP~~~LDL~~y~~~ 449 (491)
|+.++.++|+++|.+||+||+||||||.++ +|...|+++.|.||.. |||++|+..
T Consensus 567 ~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~-LDl~~y~~~ 624 (854)
T 3ihp_A 567 TALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEE-LDISQLRGT 624 (854)
T ss_dssp TTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSE-EECGGGBCC
T ss_pred cccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCc-EehHHhccC
Confidence 666778999999999999999999999984 5788999999999975 999999763
No 2
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2.6e-67 Score=560.69 Aligned_cols=329 Identities=22% Similarity=0.345 Sum_probs=272.5
Q ss_pred cccccCCC--CceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCCchhhhh----------
Q 011215 123 FCSVSLSN--LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIR---------- 190 (491)
Q Consensus 123 ~Cs~~ls~--~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~~L~di~---------- 190 (491)
.|+.|... .|+|+||+|| ++|||.++||+.|+.+++|+|+|++.++.||||+|+++|+|+.|....
T Consensus 50 ~C~~c~~~~~~~~~~cl~cg--~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~~~~~~~~~~~ 127 (476)
T 3mhs_A 50 KCGTCHEINSGATFMCLQCG--FCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVC 127 (476)
T ss_dssp BCTTTCCBCSSSEEEESSSS--CEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHHHHTGGGGGGHHHHH
T ss_pred CcccccCCCCCCceEeCCCC--CCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHHHHHHHhhhccchhh
Confidence 48888655 7999999999 555556999999999999999999999999999999999999874311
Q ss_pred -------------hcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCC-----CCCCCChHHHHHHHHHHHHHcCCCCC-
Q 011215 191 -------------HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNFK- 251 (491)
Q Consensus 191 -------------~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~fk- 251 (491)
++||.|+|||||||||||+|+|+|+||++|+...+ ......++.++|..+++++|+...++
T Consensus 128 ~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 207 (476)
T 3mhs_A 128 TKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ 207 (476)
T ss_dssp HHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--
T ss_pred hcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccc
Confidence 24999999999999999999999999999995321 12335679999999999999865432
Q ss_pred ------CCCCHHHHHHH---HHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCC------------CCCCCcccCcee
Q 011215 252 ------GQVSPHEFLQA---VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK------------KNTSIIYECFQG 310 (491)
Q Consensus 252 ------~~vsP~~ll~~---i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~------------~~~sii~~~F~G 310 (491)
..+.|..++.. +++. ++.|.+++||||+|||.+||+.||+++.... ...++|.++|+|
T Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G 286 (476)
T 3mhs_A 208 ASSSSTSTNRQTGFIYLLTCAWKI-NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEG 286 (476)
T ss_dssp ------CCCSCHHHHHHHHHHHHH-CGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCE
T ss_pred cccccccccCcchHHHHHHHHHHh-ccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecce
Confidence 24566665554 4566 7999999999999999999999999875321 235789999999
Q ss_pred EEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCce-eEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccc
Q 011215 311 ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITT-ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE 389 (491)
Q Consensus 311 ~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~-s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~ 389 (491)
++.++++|..|+ .+ .++.++|+.|+|+||.. .+|++||+.|+..
T Consensus 287 ~l~~~~~C~~C~---------------------~~s~~~~e~f~~LsL~i~~~--------------~sl~~~L~~~~~~ 331 (476)
T 3mhs_A 287 SLESSIVCPGCQ---------------------NNSKTTIDPFLDLSLDIKDK--------------KKLYECLDSFHKK 331 (476)
T ss_dssp EEEEEEECTTTC---------------------CCCEEEEEEESCEEECCTTC--------------CBHHHHHHHHHCC
T ss_pred EEEEEEEECCCC---------------------CeeCCcccchhhhccchhhh--------------hHHHHHHHHhcCh
Confidence 999999999997 44 45699999999999853 5899999999865
Q ss_pred cc--------eeeccccceEEEEEeccCCceeEEEEeeEeec-CceeecCCeeEeccCccccccCCCCCCCCCC----CC
Q 011215 390 TV--------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPKE----NE 456 (491)
Q Consensus 390 ~~--------~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~-~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~----~~ 456 (491)
+. ..|+..+.++|+++|.+||+||+|||+||.++ ++...|+.+.|.||.. |||++|+....... ..
T Consensus 332 E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~~ 410 (476)
T 3mhs_A 332 EQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTY-LNMKNYCSTKEKDKHSENGK 410 (476)
T ss_dssp EECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSE-EECGGGBSCCBCCC--CCCB
T ss_pred hhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCe-eechhhcCcccccccccccC
Confidence 53 33566778899999999999999999999975 5678999999999985 99999997543211 12
Q ss_pred CCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 457 KLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 457 ~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
....+|+|+|||+|.|++++|||++|+|.. +++|
T Consensus 411 ~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W 444 (476)
T 3mhs_A 411 VPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQW 444 (476)
T ss_dssp CCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCE
T ss_pred CCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcE
Confidence 234679999999999999999999999975 6888
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.7e-55 Score=449.76 Aligned_cols=273 Identities=27% Similarity=0.451 Sum_probs=226.0
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCC--------CCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN--------YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~--------~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~ 261 (491)
.++||.|+|||||||||||+|+|+|+||++|+.... ......+++++|+.|++.||+++ ...|+|..|+.
T Consensus 7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~~~~ 84 (367)
T 2y6e_A 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPRMFKT 84 (367)
T ss_dssp TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCHHHHH
T ss_pred CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHHHHHH
Confidence 357999999999999999999999999999985321 11224579999999999999987 36899999999
Q ss_pred HHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCC----------------------------CCCCcccCceeEEE
Q 011215 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK----------------------------NTSIIYECFQGELE 313 (491)
Q Consensus 262 ~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~----------------------------~~sii~~~F~G~l~ 313 (491)
+++.. .+.|.++.||||+|||.+||+.||++++...+ ..++|.++|+|++.
T Consensus 85 ~l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 85 QVGRF-APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHH-CGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHh-hhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99998 79999999999999999999999999864321 24688999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCccccc-----ccccCCCCCHHHHHhhccc
Q 011215 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM-----EKNIIPQVPLFNILKKFDG 388 (491)
Q Consensus 314 ~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~-----~~~~~p~vsL~~~L~~f~~ 388 (491)
++++|..|+ ..+.+.++|+.|+|+||......... .....+.++|++||+.|+.
T Consensus 164 s~~~C~~C~---------------------~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~ 222 (367)
T 2y6e_A 164 STLVCPECA---------------------KVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTT 222 (367)
T ss_dssp EEEECTTTC---------------------CEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTS
T ss_pred eeEEeCCCC---------------------CEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcc
Confidence 999999997 78999999999999999753211000 0012346899999999987
Q ss_pred ccc---------eeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCC
Q 011215 389 ETV---------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLR 459 (491)
Q Consensus 389 ~~~---------~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~ 459 (491)
.+. ..|+..+.|+|+.+|.+||+||+||||||.++.+...|+.+.|.||.+.|||++|+..+. ...
T Consensus 223 ~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-----~~~ 297 (367)
T 2y6e_A 223 METLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS-----ARP 297 (367)
T ss_dssp CEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS-----SCC
T ss_pred cccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC-----CCC
Confidence 543 346667788999999999999999999999998888999999999975699999997432 123
Q ss_pred CceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 460 SKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 460 ~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
.+|+|+|||+|.|++++|||+||+|+..+++|
T Consensus 298 ~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W 329 (367)
T 2y6e_A 298 YVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKW 329 (367)
T ss_dssp CEEEEEEEEEEECSSSSCEEEEEEECTTTCCE
T ss_pred ceEEEEEEeecCCCCCCCeeeEEEEcCCCCeE
Confidence 67999999999999999999999999877899
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=8.5e-54 Score=446.62 Aligned_cols=261 Identities=25% Similarity=0.438 Sum_probs=225.5
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCC--------CCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN--------YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~--------~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~ 261 (491)
.++||.|+|||||||||||+|+|+|+||+||+.... ......+++.+|+.|++.||++. ...|+|..|++
T Consensus 61 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~~f~~ 138 (396)
T 2gfo_A 61 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDFKI 138 (396)
T ss_dssp TCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHHHH
T ss_pred CcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC--CceECHHHHHH
Confidence 357999999999999999999999999999985321 11234679999999999999987 36799999999
Q ss_pred HHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCC----------------------------CCCCCcccCceeEEE
Q 011215 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELE 313 (491)
Q Consensus 262 ~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~----------------------------~~~sii~~~F~G~l~ 313 (491)
+++.. ++.|.++.||||+|||.+||+.||+++.+.. ...++|.++|+|++.
T Consensus 139 ~l~~~-~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 139 TIGKI-NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHH-CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHh-chhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99988 7999999999999999999999999986431 135789999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc--
Q 011215 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV-- 391 (491)
Q Consensus 314 ~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~-- 391 (491)
++++|..|+ ..+.+.++|+.|+|+||..+ ..+|++||+.|...+.
T Consensus 218 s~i~C~~C~---------------------~~s~~~e~f~~LsL~ip~~~------------~~sL~~~L~~f~~~E~l~ 264 (396)
T 2gfo_A 218 STVQCLTCH---------------------KKSRTFEAFMYLSLPLASTS------------KCTLQDCLRLFSKEEKLT 264 (396)
T ss_dssp EEEEETTTC---------------------CEEEEEEEESSEEECCSCSS------------EEEHHHHHHHHTSCEEEC
T ss_pred EEEEeCCCC---------------------ceecccccceeeeecccccc------------cCCHHHHHHHhCCccccc
Confidence 999999997 78999999999999999642 3689999999987653
Q ss_pred -------eeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEE
Q 011215 392 -------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464 (491)
Q Consensus 392 -------~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L 464 (491)
..|+..+.|+|+++|.+||+||+||||||.++.....|+.+.|.||.+.|||++|+..+.. ...+|+|
T Consensus 265 ~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-----~~~~Y~L 339 (396)
T 2gfo_A 265 DNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-----NLKKYNL 339 (396)
T ss_dssp STTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-----SCCCBEE
T ss_pred CCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC-----CCceEEE
Confidence 3356667889999999999999999999999877778999999999756999999975321 1356999
Q ss_pred EEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 465 IANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 465 ~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
+|||+|.|++++|||+||||+..+++|
T Consensus 340 ~avv~H~G~~~~GHY~a~v~~~~~~~W 366 (396)
T 2gfo_A 340 FSVSNHYGGLDGGHYTAYCKNAARQRW 366 (396)
T ss_dssp EEEEEEESCTTTCEEEEEEEETTTTEE
T ss_pred EEEEEecCCCCCCceEEEEcCCCCCCE
Confidence 999999999999999999999877889
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=5.8e-53 Score=430.12 Aligned_cols=263 Identities=27% Similarity=0.482 Sum_probs=225.9
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC------CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY------RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAV 263 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~------~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i 263 (491)
.++||.|+|||||||||||+|+|+|+||++++..... .....+++++|+.|++.||.... ...++|..|++++
T Consensus 8 g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~p~~~~~~l 86 (348)
T 3nhe_A 8 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSP-NDVVSPSEFKTQI 86 (348)
T ss_dssp SCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCT-TCEECCHHHHHHH
T ss_pred CCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCC-CCccCHHHHHHHH
Confidence 4679999999999999999999999999999853211 12345899999999999996432 5789999999999
Q ss_pred HhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCC----------------------------CCCCCcccCceeEEEEE
Q 011215 264 MKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELEVV 315 (491)
Q Consensus 264 ~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~----------------------------~~~sii~~~F~G~l~~~ 315 (491)
+.. .+.|.+++||||+|||.+||+.|++++++.. ...++|.++|+|++.++
T Consensus 87 ~~~-~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~ 165 (348)
T 3nhe_A 87 QRY-APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSS 165 (348)
T ss_dssp HHH-SGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEE
T ss_pred HHh-hhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEE
Confidence 998 7899999999999999999999999986422 12466899999999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccc----
Q 011215 316 KEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV---- 391 (491)
Q Consensus 316 ~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~---- 391 (491)
++|..|+ ..+.+.++|+.|+|+||... .+.++|++||+.|+.++.
T Consensus 166 ~~C~~C~---------------------~~s~~~e~f~~LsL~i~~~~----------~~~~sl~~~L~~~~~~e~l~~~ 214 (348)
T 3nhe_A 166 LTCTDCG---------------------YCSTVFDPFWDLSLPIAKRG----------YPEVTLMDCMRLFTKEDVLDGD 214 (348)
T ss_dssp EEETTTC---------------------CEEEEEEEESSEEECCCSSC----------SSCEEHHHHHHHHHSCEEECGG
T ss_pred EEcCCCC---------------------CEeeeeccceEEeeeCCCcc----------cCCCCHHHHHHHhcCceEecCC
Confidence 9999997 78999999999999998632 245799999999987653
Q ss_pred -----eeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEE
Q 011215 392 -----TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIA 466 (491)
Q Consensus 392 -----~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~a 466 (491)
..|+..+.+.|+++|.+||+||+|||+||.++.+...|+.+.|.||...|||++|+.... ...+|+|+|
T Consensus 215 ~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~------~~~~Y~L~a 288 (348)
T 3nhe_A 215 EKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT------NHAVYNLYA 288 (348)
T ss_dssp GCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC------CCCEEEEEE
T ss_pred CceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC------CCCcEEEEE
Confidence 335667788999999999999999999999888889999999999975699999987432 236799999
Q ss_pred EEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 467 NIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 467 vI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
||+|.|++.+|||++|+|++.+++|
T Consensus 289 vv~H~G~~~~GHY~~~~~~~~~~~W 313 (348)
T 3nhe_A 289 VSNHSGTTMGGHYTAYCRSPGTGEW 313 (348)
T ss_dssp EEEEEECSSCEEEEEEEECTTTCCE
T ss_pred EEEccCCCCCcccEEEEccCCCCcE
Confidence 9999999999999999999878899
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.6e-52 Score=427.89 Aligned_cols=263 Identities=25% Similarity=0.395 Sum_probs=219.6
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCC-----CCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~ 264 (491)
.++||.|+|||||||||||+|+|+|+||++|+.... ......++..+|+.|++.||++.. ...|+|..|+.+++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAVFQ 80 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHH
Confidence 467999999999999999999999999999985221 112345899999999999999864 35799999999999
Q ss_pred hhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCC-------------------------------------------CC
Q 011215 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK-------------------------------------------NT 301 (491)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~-------------------------------------------~~ 301 (491)
.. .+.|.+++||||+|||.+||+.||++++...+ ..
T Consensus 81 ~~-~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 81 KY-VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp HH-CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred Hh-ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence 88 79999999999999999999999999864321 23
Q ss_pred CCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHH
Q 011215 302 SIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFN 381 (491)
Q Consensus 302 sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~ 381 (491)
++|.++|+|++.+.++|..|+ ..+.+.++|+.|+|+||.... ..+.++|++
T Consensus 160 s~i~~~F~g~~~~~~~C~~C~---------------------~~s~~~e~f~~lsl~i~~~~~--------~~~~~sl~~ 210 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQACG---------------------YRSTTFEVFCDLSLPIPKKGF--------AGGKVSLRD 210 (355)
T ss_dssp SHHHHHHCEEEEEEEEETTTC---------------------CEEEEEEEESSEEECCCC---------------CBHHH
T ss_pred CcccccccEEEEeeEEeCCCC---------------------CCceeeccceeecccCCcccc--------ccCccCHHH
Confidence 568999999999999999997 788999999999999997421 124579999
Q ss_pred HHhhcccccc---------eeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCC
Q 011215 382 ILKKFDGETV---------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTP 452 (491)
Q Consensus 382 ~L~~f~~~~~---------~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~ 452 (491)
||+.|++.+. ..|+..+.++|+..|.+||+||+|||+||.++.+...|+.+.|.||...|||++|+....
T Consensus 211 ~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~- 289 (355)
T 3i3t_A 211 CFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA- 289 (355)
T ss_dssp HHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC----
T ss_pred HHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-
Confidence 9999987653 446777889999999999999999999999988889999999999976699999986421
Q ss_pred CCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 453 KENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 453 ~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
...+|+|+|||+|.|++++|||++|+|. .++|
T Consensus 290 -----~~~~Y~L~avv~H~G~~~~GHY~~~~~~--~~~W 321 (355)
T 3i3t_A 290 -----GSPVYQLYALCNHSGSVHYGHYTALCRC--QTGW 321 (355)
T ss_dssp ------CCEEEEEEEEEEEEETTEEEEEEEEEE--TTEE
T ss_pred -----CCcceEEEEEEEecCCCCCCeEEEEEEc--CCeE
Confidence 2357999999999999999999999999 4668
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.3e-50 Score=414.38 Aligned_cols=255 Identities=19% Similarity=0.267 Sum_probs=212.1
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcc
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~ 268 (491)
.++||.|+|||||||||||+|+|+|+||++|+..... .....++.++|+.||..||.+. ..++|..|+..++ .
T Consensus 5 g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~---~ 78 (353)
T 1nb8_A 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---W 78 (353)
T ss_dssp SCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT---C
T ss_pred CCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC---C
Confidence 4679999999999999999999999999999753221 2234579999999999999875 4799999998874 4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEE
Q 011215 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (491)
Q Consensus 269 ~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~ 348 (491)
+.|.++.||||+|||.+||+.|++++++.. ..++|.++|+|++.+.++|..|+ ..+.+
T Consensus 79 ~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~-~~s~i~~~F~g~~~~~i~C~~C~---------------------~~s~~ 136 (353)
T 1nb8_A 79 ETLDSFMQHDVQELCRVLLDNVENKMKGTC-VEGTIPKLFRGKMVSYIQCKEVD---------------------YRSDR 136 (353)
T ss_dssp CBTTTTTTSCHHHHHHHHHHHHHHHTTTST-TTTHHHHHHCEEEEEEEEESSSC---------------------CEEEE
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhcCCC-ccchhhhhceeEEEEEEEeccCC---------------------Ceece
Confidence 679999999999999999999999886543 45789999999999999999997 78889
Q ss_pred eecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccce------eec--cccceEEEEEeccCCceeEEEEeeE
Q 011215 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT------EVV--RPHVARMRYRVTRLPKYMILHMRRF 420 (491)
Q Consensus 349 ~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~------ec~--~~~~a~k~~~i~~lP~~LiihLkRF 420 (491)
.++|+.|+|+||.. .+|.++|..|...+.. .|. ..+.|.|+.+|.+||+||+|||+||
T Consensus 137 ~e~f~~LsL~i~~~--------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF 202 (353)
T 1nb8_A 137 REDYYDIQLSIKGK--------------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRF 202 (353)
T ss_dssp EEEESCEEECCTTC--------------SBHHHHHHHHTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCC
T ss_pred eeeeEEEEEEECCC--------------cchHHHHHHhhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecE
Confidence 99999999999863 4789999988765432 232 2456789999999999999999999
Q ss_pred eecC--ceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 421 TKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 421 ~~~~--~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
.++. +...|+.+.|.||. .|||++|+..... .....|+|+|||+|.|++++|||+||+|+..+++|
T Consensus 203 ~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~----~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W 270 (353)
T 1nb8_A 203 MYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDP----KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKW 270 (353)
T ss_dssp C--------CCCCCCCBCCS-EEECGGGBSSCCT----TSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCC
T ss_pred EEecccCceEecCcEEECCC-eeehhhhhcccCC----CCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCE
Confidence 9764 46789999999998 4999999974321 12467999999999999999999999998778899
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=5.5e-51 Score=425.13 Aligned_cols=262 Identities=22% Similarity=0.283 Sum_probs=217.0
Q ss_pred hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC--CC----CCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 011215 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY--RH----CKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAV 263 (491)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~--~~----~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i 263 (491)
..+||.|+|||||||||||+|+|+|+||++|+..... .. ...+++++|+.||+.||.+. ..|+|..|+.++
T Consensus 13 ~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~~~l 89 (404)
T 2ayn_A 13 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQFL 89 (404)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHHHH
T ss_pred CCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHHHHH
Confidence 4579999999999999999999999999999964322 11 13479999999999999875 689999999999
Q ss_pred HhhcccccC------CCCCCCHHHHHHHHHHHHHHhhhcCC------------------CCCCCcccCceeEEEEEEEcc
Q 011215 264 MKASKKRFR------IGVQSNPVEFMSWLLNTLHSDLRNTK------------------KNTSIIYECFQGELEVVKEIP 319 (491)
Q Consensus 264 ~~~s~~~F~------~~~QqDA~EFL~~LLn~L~~~l~~~~------------------~~~sii~~~F~G~l~~~~~C~ 319 (491)
+.. .+.|. ++.||||+|||.+||+.||+++.... ...++|.++|+|++.++++|.
T Consensus 90 ~~~-~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~ 168 (404)
T 2ayn_A 90 HMA-FPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCT 168 (404)
T ss_dssp HHH-CGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEES
T ss_pred HHh-CchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEec
Confidence 988 78897 58999999999999999999986432 234789999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCce--eEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc----cee
Q 011215 320 KNTISGNDQNTEKGSDGGDDHDNITT--ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET----VTE 393 (491)
Q Consensus 320 ~C~~~~~~~~~~~~~~v~~~~~~~~~--s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~----~~e 393 (491)
.|+ .. +.+.++|+.|+|+||... .+|.+||+.|+.++ |..
T Consensus 169 ~C~---------------------~~s~s~~~e~f~~Lsl~i~~~~-------------~~l~~~L~~~~~e~l~~~c~~ 214 (404)
T 2ayn_A 169 ESE---------------------EEEVTKGKENQLQLSCFINQEV-------------KYLFTGLKLRLQEEITKQSPT 214 (404)
T ss_dssp SSC---------------------CCCCBCCEEEESSEEEECSSSC-------------CBHHHHHHHTTEECCCCEETT
T ss_pred CCC---------------------CccCceeeccCceEEeecCCCc-------------ccHHHHHHHhcccceeecchh
Confidence 997 44 578999999999998632 37999999887643 334
Q ss_pred eccccceEEEEEeccCCceeEEEEeeEeecCc--eeecCCeeEeccCccccccCCCCCCCC-------------------
Q 011215 394 VVRPHVARMRYRVTRLPKYMILHMRRFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPTP------------------- 452 (491)
Q Consensus 394 c~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~--~~~K~~~~V~FP~~~LDL~~y~~~~~~------------------- 452 (491)
|+....+.|+.+|.+||+||+|||+||.++.+ ...|+.+.|.||.. |||.+|+.....
T Consensus 215 c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (404)
T 2ayn_A 215 LQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLM-LDMYELCTPELQEKMVSFRSKFKDLEDKKVN 293 (404)
T ss_dssp TTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSE-EECGGGBCHHHHHHTTTTTGGGTCTTC----
T ss_pred hCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCce-eEHhHhcChhhhhhcchhhhHHhhhhcccch
Confidence 66667789999999999999999999998754 56899999999985 999999863100
Q ss_pred -------------------------CCCCCCCCceEEEEEEEEec-cCCCCcEEEEEEeCCCCCC
Q 011215 453 -------------------------KENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 453 -------------------------~~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~~~~~~W 491 (491)
.........|+|+|||+|.| ++++|||++|||+. +++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W 357 (404)
T 2ayn_A 294 QQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEW 357 (404)
T ss_dssp ------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEE
T ss_pred hhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeE
Confidence 00112347899999999999 69999999999984 6788
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=5.9e-50 Score=419.52 Aligned_cols=257 Identities=20% Similarity=0.269 Sum_probs=213.8
Q ss_pred hcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCC----------CChHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 011215 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC----------KSPLVHRFGDLTRKIWHARNFKGQVSPHEFL 260 (491)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~----------~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll 260 (491)
.+||.|+|||||||||||+|+++|+||++|+........ ..+++++|+.||..||.+. +..|+|..|+
T Consensus 24 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~p~~~~ 101 (415)
T 1vjv_A 24 PVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPVVLL 101 (415)
T ss_dssp CCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCHHHH
T ss_pred CCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccCHHHHH
Confidence 569999999999999999999999999999964322211 2379999999999999875 4689999999
Q ss_pred HHHHhhcccccC-------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCC
Q 011215 261 QAVMKASKKRFR-------IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKG 333 (491)
Q Consensus 261 ~~i~~~s~~~F~-------~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~ 333 (491)
++++.. .+.|. ++.||||+|||.+||+.|++++.. ++|.++|+ ++.++++|..|+
T Consensus 102 ~~l~~~-~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-----~~i~~~F~-~~~~~~~C~~C~----------- 163 (415)
T 1vjv_A 102 NTLRKC-YPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-----KFSEDFRI-QFKTTIKDTAND----------- 163 (415)
T ss_dssp HHHHHH-CGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----HHHTTTCE-EEEEEEEETTEE-----------
T ss_pred HHHHHh-CchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----chHHHHHH-hheEEEEECCCC-----------
Confidence 999998 68998 899999999999999999998854 57999999 999999999997
Q ss_pred CCCCCCCCCCcee--EEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccccc----ceeeccccceEEEEEec
Q 011215 334 SDGGDDHDNITTE--TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET----VTEVVRPHVARMRYRVT 407 (491)
Q Consensus 334 ~~v~~~~~~~~~s--~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~----~~ec~~~~~a~k~~~i~ 407 (491)
..+ .+.++|+.|+|+||... .+|.+||+.|..++ |..|+....+.|+.+|.
T Consensus 164 ----------~~s~s~~~e~f~~Lsl~i~~~~-------------~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i~ 220 (415)
T 1vjv_A 164 ----------NDITVKENESDSKLQCHISGTT-------------NFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKIS 220 (415)
T ss_dssp ----------EEEEEECCCEESCEEECCCTTC-------------CBHHHHHHHHHEEC---------CCCCEEEEEEEE
T ss_pred ----------CCccccccccceeeeecccccc-------------chHHHHHHHHhhhhhhhcccccCCcccEEEEEEcc
Confidence 444 68999999999998632 37999998887643 44577777889999999
Q ss_pred cCCceeEEEEeeEeecCc--eeecCCeeEeccCccccccCCCCCCC----------------------------------
Q 011215 408 RLPKYMILHMRRFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPT---------------------------------- 451 (491)
Q Consensus 408 ~lP~~LiihLkRF~~~~~--~~~K~~~~V~FP~~~LDL~~y~~~~~---------------------------------- 451 (491)
+||+||+|||+||.++.+ ...|+.+.|.||.. |||++|+....
T Consensus 221 ~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~ 299 (415)
T 1vjv_A 221 RLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQ-LDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSS 299 (415)
T ss_dssp ECBSEEEEEECCEEEETTTTEEEECCCCCBCCSE-EECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcE-eEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccc
Confidence 999999999999998754 67999999999985 99999986320
Q ss_pred ------------------------------------CCCCCCCCCceEEEEEEEEec-cCCCCcEEEEEEe-CCCCCC
Q 011215 452 ------------------------------------PKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQR-KSEELW 491 (491)
Q Consensus 452 ------------------------------------~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~~~vr~-~~~~~W 491 (491)
..........|+|+|||+|.| ++++|||+||+|+ ..+++|
T Consensus 300 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W 377 (415)
T 1vjv_A 300 SENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKW 377 (415)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCE
T ss_pred cccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcE
Confidence 000112347899999999999 7999999999998 557889
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=412.83 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=214.4
Q ss_pred hhhhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhh
Q 011215 188 DIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKA 266 (491)
Q Consensus 188 di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~ 266 (491)
...++||.|+|||||||||||+|+|+|+||++++..... .....++.++|+.||..||.+. ..++|..|+..++
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~-- 246 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG-- 246 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHTC--
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhcC--
Confidence 345679999999999999999999999999998753211 2234579999999999999875 4799999988763
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 011215 267 SKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTE 346 (491)
Q Consensus 267 s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s 346 (491)
.+.|..+.||||+|||.+||+.|++++++.. ..++|.++|+|++.+.++|..|+ ..+
T Consensus 247 -~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~-~~s~i~~lF~G~~~s~i~C~~C~---------------------~~s 303 (522)
T 2f1z_A 247 -WETLDSFMQHDVQELCRVLLDNVENKMKGTC-VEGTIPKLFRGKMVSYIQCKEVD---------------------YRS 303 (522)
T ss_dssp -CCTTTSSTTSCHHHHHHHHHHHHHHHHTTST-TTTHHHHHHCEEEEEEECCSSSC---------------------CCC
T ss_pred -CccCCCcccccHHHHHHHHHHHHHhhccCCc-cccchhhheeEEEEEEEEcCCCC---------------------cee
Confidence 4679999999999999999999999987543 45789999999999999999987 678
Q ss_pred EEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccce------eec--cccceEEEEEeccCCceeEEEEe
Q 011215 347 TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT------EVV--RPHVARMRYRVTRLPKYMILHMR 418 (491)
Q Consensus 347 ~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~------ec~--~~~~a~k~~~i~~lP~~LiihLk 418 (491)
.+.++|+.|+|+||.. .+|.+||..|...+.. .|. ..+.|.|+.+|.+||+||+|||+
T Consensus 304 ~~~e~f~~LsL~i~~~--------------~~l~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~Lk 369 (522)
T 2f1z_A 304 DRREDYYDIQLSIKGK--------------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLM 369 (522)
T ss_dssp CEEEEESCEEECCTTC--------------CBHHHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEEC
T ss_pred eeeeeeEEEEEEeCCc--------------ccchHHHHHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEEEE
Confidence 8999999999999863 4789999988765432 232 34678999999999999999999
Q ss_pred eEeecC--ceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215 419 RFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (491)
Q Consensus 419 RF~~~~--~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W 491 (491)
||.++. +...|+.+.|.||.. |||++|+..... .....|+|+|||+|.|++++|||+||+|+..+++|
T Consensus 370 RF~~~~~~~~~~Ki~~~v~fp~~-Ldl~~~~~~~~~----~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W 439 (522)
T 2f1z_A 370 RFMYDPQTDQNIKINDRFEFPEQ-LPLDEFLQKTDP----KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKW 439 (522)
T ss_dssp CEEECSSSSCEEECCCCCBCCSE-EECGGGBSSCCT----TSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCC
T ss_pred eEEEcccCCcceEcCcEEeCCCe-ecchhhhccccC----CCCcEEEEEEEEEecccCCCceEEEEEecCCCCCE
Confidence 999875 467899999999984 999999974321 12467999999999999999999999998778899
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=226.82 Aligned_cols=95 Identities=11% Similarity=0.171 Sum_probs=74.8
Q ss_pred cCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCCCC-C--ChHHHHH-HHHHHHHHcCCCCCCCCCHHHHHHHHHhhc
Q 011215 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC-K--SPLVHRF-GDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (491)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~-~--~~l~~~l-~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s 267 (491)
.||.|+||||||||.||+|+.+|++++.++........ . ..++..| ..|+..|-. .++.|..|+..+++.
T Consensus 10 ~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR~~- 83 (374)
T 2vhf_A 10 KGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLRKI- 83 (374)
T ss_dssp CEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHHHH-
T ss_pred ccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHHH-
Confidence 49999999999999999999999999999853211111 1 1477777 777777754 579999999999998
Q ss_pred ccccCC-----CCCCCHHHHHHHHHHHHHH
Q 011215 268 KKRFRI-----GVQSNPVEFMSWLLNTLHS 292 (491)
Q Consensus 268 ~~~F~~-----~~QqDA~EFL~~LLn~L~~ 292 (491)
.|+|.. +.||||.|||+.||+.|..
T Consensus 84 ~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~ 113 (374)
T 2vhf_A 84 LEKVEAASGFTSEEKDPEEFLNILFHHILR 113 (374)
T ss_dssp HHHHC--------CCCHHHHHHHHHTTTTC
T ss_pred hHHHhcccCCCccccCHHHHHHHHHHHHhh
Confidence 577754 8899999999999998875
No 12
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.89 E-value=1e-23 Score=178.76 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=85.6
Q ss_pred CCCCcchhcccccc-cCCCCCccccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCcee
Q 011215 102 RRDCPYLDTVNRQV-LDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYE 180 (491)
Q Consensus 102 ~~~c~~l~ti~r~~-l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~ 180 (491)
+..||||++|++.. .++++++.|++|++..|+|+||+||+++|||+.++||+.|+.+++|+|+|+++|+.||||+|+++
T Consensus 4 ~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~ 83 (109)
T 3c5k_A 4 LPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAY 83 (109)
T ss_dssp BSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEE
T ss_pred CCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCE
Confidence 56899999999755 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhc
Q 011215 181 INDPSLEDIRHV 192 (491)
Q Consensus 181 v~d~~L~di~~~ 192 (491)
|.+++|.+++.+
T Consensus 84 V~~~~L~d~~~~ 95 (109)
T 3c5k_A 84 VHHQALLDVKNI 95 (109)
T ss_dssp BCCGGGHHHHHH
T ss_pred EecccccChHHH
Confidence 999999999864
No 13
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.84 E-value=5.9e-22 Score=164.92 Aligned_cols=87 Identities=32% Similarity=0.470 Sum_probs=79.1
Q ss_pred CCCCcchhcccccc---cCCCCCccccccC-CCCceEEecc--cCcccccCCCCChhcccccccCCcEEEEecCcceeec
Q 011215 102 RRDCPYLDTVNRQV---LDFDFEKFCSVSL-SNLNVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCL 175 (491)
Q Consensus 102 ~~~c~~l~ti~r~~---l~fd~~k~Cs~~l-s~~nl~~CL~--CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~ 175 (491)
+..||||++|.+.. +.+++...|++|+ +..|+|+||+ ||+++|||+.++||+.|+.+++|+|+|+++|+.||||
T Consensus 3 ~~~C~Hl~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy 82 (97)
T 2uzg_A 3 RNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCY 82 (97)
T ss_dssp CCSCHHHHHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEET
T ss_pred CCCCcCcchhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEEC
Confidence 56899999998643 3467788999999 8899999999 9999999999999999999999999999999999999
Q ss_pred CCceec-cCCchhh
Q 011215 176 PDGYEI-NDPSLED 188 (491)
Q Consensus 176 ~c~~~v-~d~~L~d 188 (491)
+|+++| .|+.|..
T Consensus 83 ~cdd~V~~d~~L~~ 96 (97)
T 2uzg_A 83 ACSKEVFLDRKLGT 96 (97)
T ss_dssp TTTEEECCCSCCCC
T ss_pred CCCcEeecCccccc
Confidence 999999 6988864
No 14
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.81 E-value=2e-20 Score=163.05 Aligned_cols=92 Identities=24% Similarity=0.232 Sum_probs=80.2
Q ss_pred CCCCcchhccccc----ccCCCCCccccccCCCCceEEecccCcccccCCC------CChhcccccccCCcEEEEecC--
Q 011215 102 RRDCPYLDTVNRQ----VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQ------KSHAYTHSLEAGHHVYINLRT-- 169 (491)
Q Consensus 102 ~~~c~~l~ti~r~----~l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~------~sha~~H~~~~~H~v~v~l~t-- 169 (491)
+..|||+++|.+. .++++.. .|+.|++..|||+||+||.++|||.. ++||+.|+.+++|+|+|+|+|
T Consensus 12 ~~~C~h~~~l~q~~~~~~~~~~~~-~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~ 90 (129)
T 2g45_A 12 RQVSKHAFSLKQLDNPARIPPCGW-KCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTIT 90 (129)
T ss_dssp CEECTTTTTCCCCSSCCCCCCCBC-CCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCB
T ss_pred CCCCCCcCcccccccccccCCCCC-cCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCC
Confidence 4579999999763 4566654 59999999999999999999998864 999999999999999999999
Q ss_pred ---cceeecCCceeccCCchhhhhhc-CC
Q 011215 170 ---EKVYCLPDGYEINDPSLEDIRHV-GL 194 (491)
Q Consensus 170 ---~~vyc~~c~~~v~d~~L~di~~~-GL 194 (491)
+.||||+|+++|.|+.|+.++.. |+
T Consensus 91 ~~~~~vwcY~cd~~V~dp~L~~hl~~fgi 119 (129)
T 2g45_A 91 PDGADVYSYDEDDMVLDPSLAEHLSHFGI 119 (129)
T ss_dssp TTBCCEEETTTTEEEECTTHHHHHHTTTC
T ss_pred CCCCeEEECCCCCEeECccHHHHHHHHCC
Confidence 79999999999999999988643 53
No 15
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.64 E-value=1.1e-16 Score=133.00 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=68.1
Q ss_pred CCCcchhcccccccCCCCCccccccCCCC----ceEEecccCcccccCC-CCChhcccccccCCcEEEEec--Ccceeec
Q 011215 103 RDCPYLDTVNRQVLDFDFEKFCSVSLSNL----NVYACLVCGKYYQGRG-QKSHAYTHSLEAGHHVYINLR--TEKVYCL 175 (491)
Q Consensus 103 ~~c~~l~ti~r~~l~fd~~k~Cs~~ls~~----nl~~CL~CG~~~~Gr~-~~sha~~H~~~~~H~v~v~l~--t~~vyc~ 175 (491)
..||||..+...... ...|+.|+... |||+||+||.++|||+ +++||..|+.+++|+|.+.+. ++.||||
T Consensus 3 ~~C~Hl~~~~~~~p~---~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY 79 (102)
T 2ida_A 3 MGCRHVAGIRTVTPS---ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCY 79 (102)
T ss_dssp CCCGGGGGCCCCCCS---SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEET
T ss_pred CcCcCccccccCCCC---CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEc
Confidence 469999988753322 56798887765 9999999999999997 899999999999999888775 5789999
Q ss_pred CCceeccCCc
Q 011215 176 PDGYEINDPS 185 (491)
Q Consensus 176 ~c~~~v~d~~ 185 (491)
.|+.+|.+|.
T Consensus 80 ~cd~~V~~p~ 89 (102)
T 2ida_A 80 VDEVMFDLSD 89 (102)
T ss_dssp TTTEEEECTT
T ss_pred CCCcEEECcc
Confidence 9999998753
No 16
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-15 Score=130.64 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=67.5
Q ss_pred CCCCcchhccc-----ccccCCCCCccccccCC--------------CCceEEecccCcccccCC-CCChhcccccc---
Q 011215 102 RRDCPYLDTVN-----RQVLDFDFEKFCSVSLS--------------NLNVYACLVCGKYYQGRG-QKSHAYTHSLE--- 158 (491)
Q Consensus 102 ~~~c~~l~ti~-----r~~l~fd~~k~Cs~~ls--------------~~nl~~CL~CG~~~~Gr~-~~sha~~H~~~--- 158 (491)
...|||+..+- +..+.-.....|+.|.. ..|+|+||+||.++|||. +++||..|+.+
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~ 83 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRS 83 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCS
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCC
Confidence 45799998542 11121122345777754 699999999999999997 78999999998
Q ss_pred cCCcEEEEecCcceeecCCceeccCCch
Q 011215 159 AGHHVYINLRTEKVYCLPDGYEINDPSL 186 (491)
Q Consensus 159 ~~H~v~v~l~t~~vyc~~c~~~v~d~~L 186 (491)
++|+|+|+++|..||||.|+++|.++..
T Consensus 84 t~H~l~~~l~t~~vwCY~cd~~V~~~~~ 111 (126)
T 2i50_A 84 EPHCLVLSLDNWSVWCYVCDNEVQYCSS 111 (126)
T ss_dssp SCCCEEEETTTCCEEETTTTEEECCCTT
T ss_pred CCCcEEEECCCCeEEeCCCCcEEEcCcc
Confidence 8999999999999999999999998653
No 17
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.46 E-value=0.028 Score=52.33 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCCCCCC
Q 011215 198 KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQS 277 (491)
Q Consensus 198 GNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~~~Qq 277 (491)
-|+||+||++-+|=++.+. +..+..++..+ .|..|...+-.. ..+..++-.
T Consensus 20 dNNCwVNaa~l~LQ~~~~~--------------------~~~aw~~f~~G-------d~~~fV~~~Ya~--~~~~~G~~g 70 (211)
T 3mp2_A 20 DNNCWINACCYQLQAFDFF--------------------NNEAWEKFKKG-------DVMDFVNLCYAA--TTLARGHSG 70 (211)
T ss_dssp TTCHHHHHHHHHHTTCTTC--------------------CCHHHHHHTTT-------CCHHHHHHHHHH--HTCCTTSCC
T ss_pred CCCcHHHHHHHHHHhcChh--------------------HHHHHHHHhCC-------ChHHHHHHHHHH--cCCCCCCCc
Confidence 4899999999887654432 22334444333 466677666544 346678899
Q ss_pred CHHHHHHHHH
Q 011215 278 NPVEFMSWLL 287 (491)
Q Consensus 278 DA~EFL~~LL 287 (491)
||.++|..|+
T Consensus 71 Da~~~L~~Ll 80 (211)
T 3mp2_A 71 DAEYLLELML 80 (211)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999988
No 18
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.29 E-value=0.19 Score=49.56 Aligned_cols=71 Identities=17% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCcCCC---CcchhHHHHHHHhCCHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhccc
Q 011215 193 GLNNIK---ETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269 (491)
Q Consensus 193 GL~NlG---NTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~ 269 (491)
|++=|. |+||+||++-+|=++.+ .+ ..+ .+.++..++..+ .|..|...+-.. .
T Consensus 101 G~~vLkq~dNNCwVNaa~l~LQ~~~~---------~F---~~~---~l~~aw~~f~~G-------d~~~FVa~~Ya~--~ 156 (315)
T 2fe8_A 101 GLTSIKWADNNCYLSSVLLALQQLEV---------KF---NAP---ALQEAYYRARAG-------DAANFCALILAY--S 156 (315)
T ss_dssp TEECCCCCTTTHHHHHHHHHHHTSCC---------CB---SSH---HHHHHHHHHHHT-------CCHHHHHHHHHH--T
T ss_pred CEEEEeecCCccHHHHHHHHHHhcCC---------cc---CCH---HHHHHHHHHhCC-------ChHHHHHHHHHh--c
Confidence 555544 89999999887755322 00 112 233444444444 366777766554 2
Q ss_pred ccCCCCCCCHHHHHHHHH
Q 011215 270 RFRIGVQSNPVEFMSWLL 287 (491)
Q Consensus 270 ~F~~~~QqDA~EFL~~LL 287 (491)
....++-.||.++|..||
T Consensus 157 ~~~~G~~gDa~~~L~~Ll 174 (315)
T 2fe8_A 157 NKTVGELGDVRETMTHLL 174 (315)
T ss_dssp TCCTTSCCCHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHH
Confidence 355788999999998884
No 19
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=81.43 E-value=0.86 Score=50.98 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=37.4
Q ss_pred CCCceEEecccCcccc-cCC--CCChhcccccccCCcE-EEE----ecCcceeecCCce
Q 011215 129 SNLNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHHV-YIN----LRTEKVYCLPDGY 179 (491)
Q Consensus 129 s~~nl~~CL~CG~~~~-Gr~--~~sha~~H~~~~~H~v-~v~----l~t~~vyc~~c~~ 179 (491)
...-|.-|++|+|.|| |+| ..||...|-..+.|.- -+. ++...+-||.|+.
T Consensus 21 ~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 21 SAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp CTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred CCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCC
Confidence 3478999999999999 555 4789999998887743 332 2234678888854
No 20
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=70.95 E-value=2.1 Score=47.80 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=39.4
Q ss_pred ccccccC--CCCceEEecccCcccc-cCC--CCChhcccccccCCcE-EEEec----CcceeecCCce
Q 011215 122 KFCSVSL--SNLNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHHV-YINLR----TEKVYCLPDGY 179 (491)
Q Consensus 122 k~Cs~~l--s~~nl~~CL~CG~~~~-Gr~--~~sha~~H~~~~~H~v-~v~l~----t~~vyc~~c~~ 179 (491)
+.|+-|. ...-|--|+.|+|.|| |+| ..||...|-..+.|.- -+.-. ...+=||.|+.
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC 74 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCC
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCC
Confidence 3444443 3368999999999999 554 4789999988887743 22222 24667888864
No 21
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=64.83 E-value=4.2 Score=45.69 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCCCceEEecccCcccccCCCCChhcccccccCCcEEEEec
Q 011215 128 LSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLR 168 (491)
Q Consensus 128 ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~ 168 (491)
.+..-||+||.|-.-||- .|+..|+..++|++|+|+.
T Consensus 57 ~~~~gl~vcl~~f~~~~~----~~~~~~~~~~~~~~~l~i~ 93 (854)
T 3ihp_A 57 ESEGGLYICMNTFLGFGK----QYVERHFNKTGQRVYLHLR 93 (854)
T ss_dssp TSTTCEEEETTTCCEECT----TTHHHHHHHHCCCEEEEEE
T ss_pred CCCCCeEEcccccccccH----HHHHHHHhccCCceEEEEE
Confidence 466799999999765553 5999999999999999865
No 22
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=60.22 E-value=4.1 Score=35.12 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.8
Q ss_pred hcCCcCCCCcchhHHHHHHHhC
Q 011215 191 HVGLNNIKETDFVNVTIQSLMR 212 (491)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ 212 (491)
+.|+.|--++|++|++||..-.
T Consensus 13 fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHH
Confidence 4489999999999999998643
No 23
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=38.61 E-value=6.5 Score=36.42 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=0.0
Q ss_pred eEEecccCcccccCCCCChhcccccccCCcEE
Q 011215 133 VYACLVCGKYYQGRGQKSHAYTHSLEAGHHVY 164 (491)
Q Consensus 133 l~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~ 164 (491)
...|++||+.+.|. .-|..|+.++||.=|
T Consensus 180 ~l~C~~C~~~~~g~---~~a~~ha~~tgH~~f 208 (212)
T 3by4_A 180 QIKCNTCQMTFVGE---REVARHAESTGHVDF 208 (212)
T ss_dssp --------------------------------
T ss_pred EEEcccCCCcccCH---HHHHHHHHHhCCCCC
Confidence 34699999888875 468999999999654
No 24
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=29.39 E-value=21 Score=22.56 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHH
Q 011215 278 NPVEFMSWLLNTL 290 (491)
Q Consensus 278 DA~EFL~~LLn~L 290 (491)
=|.||+.||++.-
T Consensus 10 aakdFv~WL~ngk 22 (31)
T 3c5t_B 10 AVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCC
Confidence 4789999999753
No 25
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.34 E-value=12 Score=20.78 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=10.6
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.|.|-.||+.|...
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 47899999887654
No 26
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.98 E-value=21 Score=24.67 Aligned_cols=13 Identities=46% Similarity=1.045 Sum_probs=11.0
Q ss_pred ceEEecccCcccc
Q 011215 132 NVYACLVCGKYYQ 144 (491)
Q Consensus 132 nl~~CL~CG~~~~ 144 (491)
..|.|.+||.++.
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 4699999998776
No 27
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.42 E-value=35 Score=25.31 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=11.6
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.+-| .||..||+.
T Consensus 29 ~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 29 GFKC-KCGSTFCGS 41 (64)
T ss_dssp CEEC-TTSCEECSS
T ss_pred CeEe-ecCCEeccc
Confidence 5899 899999986
No 28
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.87 E-value=15 Score=20.75 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=10.6
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.|.|-.||+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA 15 (29)
Confidence 37789999887654
No 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.78 E-value=16 Score=20.63 Aligned_cols=14 Identities=21% Similarity=0.809 Sum_probs=10.9
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.|.|-.||+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 57899999887654
No 30
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.32 E-value=29 Score=22.21 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=14.2
Q ss_pred CCCCceEEecccCccccc
Q 011215 128 LSNLNVYACLVCGKYYQG 145 (491)
Q Consensus 128 ls~~nl~~CL~CG~~~~G 145 (491)
+.....|.|-+|||.|--
T Consensus 3 ~~gekp~~C~~CgK~F~~ 20 (36)
T 1fv5_A 3 LLKPARFMCLPCGIAFSS 20 (36)
T ss_dssp SSSCCCCEETTTTEECSC
T ss_pred CCCccCeECCCCCCccCC
Confidence 455778999999988853
No 31
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.19 E-value=42 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=11.4
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.+-| .||..||+.
T Consensus 29 ~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 29 GFMC-RCGTTFCGS 41 (64)
T ss_dssp CEEC-SSSCEECTT
T ss_pred CEEe-ecCCEeccc
Confidence 4899 799999986
No 32
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.04 E-value=18 Score=25.04 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=7.9
Q ss_pred ceEEecccCcccc
Q 011215 132 NVYACLVCGKYYQ 144 (491)
Q Consensus 132 nl~~CL~CG~~~~ 144 (491)
.+|.||-||+-|.
T Consensus 2 ~iY~C~rCg~~fs 14 (48)
T 4ayb_P 2 AVYRCGKCWKTFT 14 (48)
T ss_dssp ---CCCCTTTTCC
T ss_pred cEEEeeccCCCcc
Confidence 3688999996653
No 33
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.91 E-value=34 Score=24.14 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=11.6
Q ss_pred eEEecccCcccccC
Q 011215 133 VYACLVCGKYYQGR 146 (491)
Q Consensus 133 l~~CL~CG~~~~Gr 146 (491)
.|.|.+||.++.+.
T Consensus 2 ~~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 2 KLSCKICGYIYDED 15 (52)
T ss_dssp EEEESSSSCEEETT
T ss_pred cEEeCCCCeEECCC
Confidence 69999999888764
No 34
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=21.64 E-value=45 Score=20.82 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHH
Q 011215 276 QSNPVEFMSWLLNT 289 (491)
Q Consensus 276 QqDA~EFL~~LLn~ 289 (491)
|.=|.+|+.||++.
T Consensus 16 ~~~ak~fv~wLl~~ 29 (30)
T 1t5q_A 16 KIHQQDFVNWLLAQ 29 (30)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 33578899999873
No 35
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.85 E-value=37 Score=24.24 Aligned_cols=15 Identities=33% Similarity=0.902 Sum_probs=12.1
Q ss_pred ceEEecccCcccccC
Q 011215 132 NVYACLVCGKYYQGR 146 (491)
Q Consensus 132 nl~~CL~CG~~~~Gr 146 (491)
..|.|.+||.++.+.
T Consensus 2 ~~y~C~~CGyvYd~~ 16 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEA 16 (55)
T ss_dssp CEEEETTTCCEEETT
T ss_pred CcEEeCCCCeEECCC
Confidence 369999999888764
No 36
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.28 E-value=33 Score=30.94 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=12.7
Q ss_pred ceEEecccCcccccC
Q 011215 132 NVYACLVCGKYYQGR 146 (491)
Q Consensus 132 nl~~CL~CG~~~~Gr 146 (491)
-.|.|.+||.++-|.
T Consensus 154 ~~~~C~~CG~~~~g~ 168 (191)
T 1lko_A 154 TKWRCRNCGYVHEGT 168 (191)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred ceEEECCCCCEeeCC
Confidence 489999999888764
No 37
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=20.25 E-value=44 Score=23.06 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=8.8
Q ss_pred cccccccccCC
Q 011215 16 HVKSVKVVEQS 26 (491)
Q Consensus 16 ~~~~~~~~~~~ 26 (491)
|+||.|...+.
T Consensus 1 MaKR~A~~qlt 11 (46)
T 2c1m_B 1 MAKRVAEKELT 11 (46)
T ss_dssp CCCCCCSSCCC
T ss_pred CCccchhhhhc
Confidence 78888887777
Done!